Citrus Sinensis ID: 020248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHcccccHHHccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
EEEEccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHEEEEEEcccccccccccEEEEEEcccccHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccEEEEEccHHHcEEccEccccccccHHHccHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHcccHHHHEcccccEcccccccEccHHHHHHHcccccHHHHHHHHHHHcccccccccccEcHHHHHccHHHccccccccccccccccHccccccccccccccc
Coil and Loop (DISEMBL)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRElgiihtdlkpenillvstidpskdpirsgltpilerpegsinggstsTMTIVEKKLKRRAKRAVANISIRrasmggielpkpercldgidmRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAtgdmlfapksgqgfcedEDHLALMMELIGKMprkiaiggaqskdyfdrhgdlkriRRLKFWSLDRLLVDKYRFSETDAREFAEFLVplldftpekrptaqqclqhpwlslrnstrdetknksnvekvDVGMSKLEIKVGK
Flexible Loop (DISEMBL)
mvleflgdSLLRLIKYsrykglelnkvREICKYILTGLDYLHRELGIIHTDLKPENILLVstidpskdpirsgltpilerpegsinggststmTIVEKKlkrrakravanisirrasmggielpkperCLDGIDMRCKVVDFGNACRANKQFAeeiqtrqyraPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGgaqskdyfdrhgdlkrirrlkfwsldrlLVDKYRFSETDAREFAEFLVPLLDFTPEKRPtaqqclqhpwlslrnstrdetknksnvekvdvgmskleikvgk
Low Complexity Region (SEG)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEkklkrrakravaNISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Disordered region (IsUnstruct)
**LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI*******************************************AVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE****AQQCLQHPWL********************************
Disordered Region (DISOPRED)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP**********TMTIVEKKLKRR*************SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK*****************YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW*********************************
Disordered Region (DISEMBL)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEK********AVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Disordered Region (DISPRO)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS*******KS*V****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIKVGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q45FA5	426	Serine/threonine-protein	N/A	no	0.838	0.647	0.413	2e-60
P36616	544	Protein kinase dsk1 OS=Sc	yes	no	0.899	0.544	0.353	7e-55
Q5RD27	655	SRSF protein kinase 1 OS=	yes	no	0.553	0.277	0.5	8e-52
Q96SB4	655	SRSF protein kinase 1 OS=	yes	no	0.553	0.277	0.5	8e-52
O70551	648	SRSF protein kinase 1 OS=	yes	no	0.498	0.253	0.524	5e-51
P78362	688	SRSF protein kinase 2 OS=	no	no	0.647	0.309	0.437	1e-50
O54781	681	SRSF protein kinase 2 OS=	no	no	0.498	0.240	0.524	2e-50
Q86A12	656	Probable serine/threonine	yes	no	0.492	0.246	0.552	1e-48
Q9UPE1	567	SRSF protein kinase 3 OS=	no	no	0.498	0.289	0.487	2e-46
B8Y466	566	SRSF protein kinase 3 OS=	no	no	0.498	0.289	0.493	2e-46

>sp|Q45FA5|SRPK_PHYPO Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1

 Score =  232 bits (592), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/305 (41%), Positives = 180/305 (59%), Gaps = 29/305 (9%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG +LL LIK   YKG+ L  V+ + K IL GLDYLH +  IIHTDLKPEN+LL 
Sbjct: 138 MVFEKLGSNLLDLIKLHNYKGIPLPLVKCMTKQILIGLDYLHTKCKIIHTDLKPENVLLD 197

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
             + P            L   +  ++G S+S+       +   A+ A      R+   G 
Sbjct: 198 HLLRPD----------TLNWDDQFLDGASSSS------PISNDAENA------RQTRSGK 235

Query: 121 IELPKPERCLDGIDMR------CKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSF 174
           I+     R  D +  +       K+ D G AC  +K F +++QTRQYR PEVIL   +  
Sbjct: 236 IKWEPSARIADSLSRKIVKVPIVKIADLGTACWTHKHFTDDVQTRQYRCPEVILGQKWDT 295

Query: 175 SVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY 234
           ++DMWS AC  FELATGD+LF PK G  + + +DHLALM+EL+G+MPR     G++S+ Y
Sbjct: 296 TIDMWSLACMVFELATGDLLFCPKKGDKYDKTDDHLALMIELLGRMPRSFITKGSKSEKY 355

Query: 235 FDRHGDLKRIRRL-KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
           F+  G+LK IR+L   W +  +L +KYRF + +A + + FL+P+L + PEKR TA+  L+
Sbjct: 356 FNSKGELKYIRKLGPQWGMSDVLYEKYRFPKEEADKLSAFLLPMLQYEPEKRATARDSLE 415

Query: 294 HPWLS 298
           HP+++
Sbjct: 416 HPYMA 420

Phosphorylates serine/arginine-rich protein PSR.
Physarum polycephalum (taxid: 5791)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P36616|DSK1_SCHPO Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2

 Score =  214 bits (545), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 183/354 (51%), Gaps = 58/354 (16%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG++LL LI+   ++G+ +  V++I   +L  LDYLHRE GIIHTDLKPEN+L+ 
Sbjct: 164 MVFEVLGENLLSLIQSYGHRGVPVGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLIC 223

Query: 61  STID-------PSKDPI------------RSGLT---PILERPEGSINGGSTSTMTIVEK 98
              D       P+                 +G T   PI++R + S++  +    T  + 
Sbjct: 224 IDQDALQHIEAPATTSSPTSNTSSSKTRNNTGYTAKAPIIKRGQ-SVDNSAQERKTFAKN 282

Query: 99  KLKRRA---------------------KRAVANISIRRASMGGIELPKP------ERCLD 131
             K                        + AV+ IS+R +         P         LD
Sbjct: 283 PTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSLILD 342

Query: 132 GID--------MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           G++        +  K+ D GNAC   K F  ++QTRQYR+PEVIL   +  S D WSFAC
Sbjct: 343 GVNGSQEPVPKITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFAC 402

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             FEL TGD LF P++G  + +++DH+A ++EL+   P+++A+ G  S+D F+R G+L+ 
Sbjct: 403 IIFELLTGDYLFDPRNGNSYSKEDDHIAQIIELLVNYPKQMALSGKHSRDLFNRRGELRN 462

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           I +LKFW L  +L  KY FS   A++ ++FL P+L F P KR  A      PWL
Sbjct: 463 IHKLKFWPLKDVLEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWL 516

May play an important role in mitotic control by altering cellular location, degree of phosphorylation and kinase activity. Abundant expression accelerates the exit when cells are in M-phase and also delays the entry into mitosis when cells are in G2. Phosphorylates prp2 in vitro and so may have a role in co-ordinating pre-mRNA splicing with the prgression of the cell division cycle.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5RD27|SRPK1_PONAB SRSF protein kinase 1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query: 117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
           S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct: 473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct: 533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct: 593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query: 297 LS 298
           L+
Sbjct: 653 LN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96SB4|SRPK1_HUMAN SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query: 117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
           S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct: 473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct: 533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct: 593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query: 297 LS 298
           L+
Sbjct: 653 LN 654

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70551|SRPK1_MOUSE SRSF protein kinase 1 OS=Mus musculus GN=Srpk1 PE=1 SV=2

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 122/164 (74%)

Query: 135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATGD L
Sbjct: 484 LQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYL 543

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           F P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W L  
Sbjct: 544 FEPHSGEDYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLLE 603

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           +LV+KY + + +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 604 VLVEKYEWPQEEAAGFTDFLLPMLELMPEKRATAAECLRHPWLN 647

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78362|SRPK2_HUMAN SRSF protein kinase 2 OS=Homo sapiens GN=SRPK2 PE=1 SV=3

 Score =  200 bits (509), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 143/224 (63%), Gaps = 11/224 (4%)

Query: 75  TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID 134
           +P+ E+ E S +   + T++        +AK   A++ +          P   R  D I 
Sbjct: 475 SPLTEQEESSPSHDRSRTVSASSTGDLPKAKTRAADLLVN---------PLDPRNADKI- 524

Query: 135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
            R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS   D+WS AC AFELATGD L
Sbjct: 525 -RVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 583

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           F P SG+ +  DEDH+A ++EL+G +PR  A+ G  S+++F+R G+L+ I +LK WSL  
Sbjct: 584 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 643

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+HPWL+
Sbjct: 644 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 687

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54781|SRPK2_MOUSE SRSF protein kinase 2 OS=Mus musculus GN=Srpk2 PE=1 SV=2

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 121/164 (73%)

Query: 135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           +R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS   D+WS AC AFELATGD L
Sbjct: 517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 576

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           F P SG+ +  DEDH+A ++EL+G +PR  A+ G  S+++F+R G+L+ I +LK WSL  
Sbjct: 577 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 636

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+HPWL+
Sbjct: 637 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLN 680

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q86A12|SKY1_DICDI Probable serine/threonine-protein kinase sky1 OS=Dictyostelium discoideum GN=sky1 PE=3 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 195
           R ++VD GNAC  +K F ++IQTRQYRAPE I++A +   VD+WS AC AFELATGD LF
Sbjct: 486 RAQLVDLGNACWTDKHFTDDIQTRQYRAPEAIVKAKWGTPVDIWSAACMAFELATGDHLF 545

Query: 196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK-FWSLDR 254
            PKSG+GF + +DHLALM+EL+GK PR I  GG +S+ YF   GDL++I  L   W L  
Sbjct: 546 KPKSGKGFEKSDDHLALMIELLGKPPRFIFAGGDESRVYFTHKGDLRKIPDLSDQWPLFS 605

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           +L +KY+FS  +A++F  FL+P+L++ PEKR TA+ CL H WL
Sbjct: 606 VLTEKYKFSIQEAKDFEAFLLPMLNYLPEKRATAKDCLNHTWL 648

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UPE1|SRPK3_HUMAN SRSF protein kinase 3 OS=Homo sapiens GN=SRPK3 PE=2 SV=2

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 115/164 (70%)

Query: 135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           ++ K+ D GNAC  +K F E+IQTRQYRA EV++ A Y    D+WS AC AFELATGD L
Sbjct: 403 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 462

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           F P SG+ +  DEDH+A ++EL+G +P   A+ G  S+++F+R G+L+ I  LK W L  
Sbjct: 463 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 522

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           +L++KY +    A +F+ FL+P++++ PEKR +A  CLQHPWL+
Sbjct: 523 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 566

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B8Y466|SRPK3_PIG SRSF protein kinase 3 OS=Sus scrofa GN=SRPK3 PE=2 SV=1

 Score =  186 bits (471), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 114/164 (69%)

Query: 135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           +R K+ D GNAC  +K F E IQTRQYRA EV++ A Y    D+WS AC AFELATGD L
Sbjct: 402 IRIKIADLGNACWVHKHFTEGIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 461

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           F P SG+ +  DEDH+A ++EL+G +P   A+ G  S+++F+R G+L+ I  LK W L  
Sbjct: 462 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 521

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           +L++KY +    A +F+ FL+P++++ PEKR +A  CLQHPWL+
Sbjct: 522 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 565

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
224084119	442	predicted protein [Populus trichocarpa]	0.984	0.733	0.835	1e-157
225438452	444	PREDICTED: serine/threonine-protein kina	0.990	0.734	0.811	1e-156
255561431	445	srpk, putative [Ricinus communis] gi|223	0.987	0.730	0.801	1e-155
147806137	463	hypothetical protein VITISV_038749 [Viti	0.984	0.699	0.807	1e-154
356531335	445	PREDICTED: serine/threonine-protein kina	0.993	0.734	0.802	1e-153
356531337	460	PREDICTED: serine/threonine-protein kina	0.993	0.710	0.802	1e-153
224114475	442	predicted protein [Populus trichocarpa]	0.984	0.733	0.802	1e-152
356559181	445	PREDICTED: serine/threonine-protein kina	0.993	0.734	0.787	1e-151
449434086	444	PREDICTED: SRSF protein kinase 1-like [C	0.990	0.734	0.784	1e-150
356496553	445	PREDICTED: probable serine/threonine-pro	0.990	0.732	0.769	1e-146

>gi|224084119|ref|XP_002307217.1| predicted protein [Populus trichocarpa] gi|222856666|gb|EEE94213.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/329 (83%), Positives = 302/329 (91%), Gaps = 5/329 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLI+++RYKGLEL+KVREICK I+TGLDYLHRELGIIH+DLKPENILL 
Sbjct: 119 MVLEFLGDSLLRLIRHNRYKGLELDKVREICKCIVTGLDYLHRELGIIHSDLKPENILLF 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDPIRSGLTPILERPEG+ NG  TSTMT++EKKLKRRAKRAVA IS RR SMGG
Sbjct: 179 STIDPAKDPIRSGLTPILERPEGNHNG--TSTMTLIEKKLKRRAKRAVAKISGRRVSMGG 236

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
             + KPER LDGID+RCKVVDFGNAC A+KQFAEEIQTRQYRAPEVILR+GYSFSVDMWS
Sbjct: 237 -AVQKPERSLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILRSGYSFSVDMWS 295

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FACTAFELATGDMLFAPK GQ + EDEDHLALMMEL+GKMPRKIAIGGA SKDYFDRHGD
Sbjct: 296 FACTAFELATGDMLFAPKDGQDYSEDEDHLALMMELLGKMPRKIAIGGALSKDYFDRHGD 355

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW LDRLLV+KY+FSE DAREFAEFL PL DFTPEKRPTAQQCLQHPWL+L+
Sbjct: 356 LKRIRRLKFWPLDRLLVEKYKFSENDAREFAEFLCPLFDFTPEKRPTAQQCLQHPWLNLK 415

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
           +ST++ETK++S V K+ VG+S L  KVGK
Sbjct: 416 SSTQNETKSESKVAKLGVGVSNL--KVGK 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438452|ref|XP_002277212.1| PREDICTED: serine/threonine-protein kinase SRPK2 [Vitis vinifera] gi|296082557|emb|CBI21562.3| unnamed protein product [Vitis vinifera]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/329 (81%), Positives = 300/329 (91%), Gaps = 3/329 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDS+LRLIKY+RYKGLE NKVREICK ILTGLDY+HRELGIIHTDLKPENILL 
Sbjct: 119 MVLEFLGDSILRLIKYNRYKGLEFNKVREICKCILTGLDYMHRELGIIHTDLKPENILLF 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDPIRSGLTPILERPEG+  GG T  +  +EKKLK RA+RAVA IS +RASMGG
Sbjct: 179 STIDPAKDPIRSGLTPILERPEGNPTGGVT--INSIEKKLKARARRAVAKISGKRASMGG 236

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
            E PK ER LDGID+RCK+VDFGNAC A++QF  EIQTRQYRAPEV+L+AGYS SVDMWS
Sbjct: 237 -ETPKAERSLDGIDVRCKIVDFGNACWADRQFTGEIQTRQYRAPEVVLQAGYSTSVDMWS 295

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FACTAFELATGDMLFAPK+GQG+ EDEDHLALMMEL+GK+PRK+AIGGA+SKD FDRHGD
Sbjct: 296 FACTAFELATGDMLFAPKNGQGYSEDEDHLALMMELLGKIPRKVAIGGARSKDLFDRHGD 355

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW LDR+LVD+Y+FSE+DAREFA+FLVPLLDF PEKRPTAQQCLQHPWL+L 
Sbjct: 356 LKRIRRLKFWPLDRILVDRYKFSESDAREFADFLVPLLDFAPEKRPTAQQCLQHPWLNLT 415

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
           N   +ETK+KSN+EK+DVGMSKL+I+VGK
Sbjct: 416 NLAANETKSKSNMEKLDVGMSKLQIEVGK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561431|ref|XP_002521726.1| srpk, putative [Ricinus communis] gi|223539117|gb|EEF40713.1| srpk, putative [Ricinus communis]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 298/328 (90%), Gaps = 3/328 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLI+YSRYKGL  NKVREICK IL GLDYLHRELG+IH+DLKPENILL 
Sbjct: 120 MVLEFLGDSLLRLIRYSRYKGLPFNKVREICKCILIGLDYLHRELGLIHSDLKPENILLF 179

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDPIRSGLTPILERPEGS+NGG+T  M ++E+KLKRRAKRAVA IS RRASMGG
Sbjct: 180 STIDPAKDPIRSGLTPILERPEGSLNGGAT--MNLIERKLKRRAKRAVAKISERRASMGG 237

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
             + K E+CLDG+D+RCK+VDFGNAC A+KQFAEEIQTRQYRAPEV+L++GYSF VDMWS
Sbjct: 238 -AMTKQEKCLDGVDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVVLQSGYSFPVDMWS 296

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FACTAFELATGDM+FAPK GQGF EDEDHLALMMEL+GKMPRKIAIGGA SKD+FDR+GD
Sbjct: 297 FACTAFELATGDMMFAPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGANSKDFFDRYGD 356

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW LDRLLVDKY+FSE DA+EFAEFL PLLDF PEKRPTAQQCLQHPWL+LR
Sbjct: 357 LKRIRRLKFWPLDRLLVDKYKFSENDAKEFAEFLCPLLDFVPEKRPTAQQCLQHPWLNLR 416

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVG 328
           +ST+ +  N+++V K+ VG+S L++ VG
Sbjct: 417 SSTQTQMGNEADVGKLQVGVSNLQLTVG 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806137|emb|CAN70006.1| hypothetical protein VITISV_038749 [Vitis vinifera]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/327 (80%), Positives = 297/327 (90%), Gaps = 3/327 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDS+LRLIKY+RYKGLE NKVREICK ILTGLDY+HRELGIIHTDLKPENILL 
Sbjct: 121 MVLEFLGDSILRLIKYNRYKGLEFNKVREICKCILTGLDYMHRELGIIHTDLKPENILLF 180

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDPIRSGLTPILERPEG+  GG T  +  +EKKLK RA+RAVA IS +RASMGG
Sbjct: 181 STIDPAKDPIRSGLTPILERPEGNPTGGVT--INSIEKKLKARARRAVAKISGKRASMGG 238

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
            E PK ER LDGID+RCK+VDFGNAC A++QF  EIQTRQYRAPEV+L+AGYS SVDMWS
Sbjct: 239 -ETPKAERSLDGIDVRCKIVDFGNACWADRQFTGEIQTRQYRAPEVVLQAGYSTSVDMWS 297

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FACTAFELATGDMLFAPK+GQG+ EDEDHLALMMEL+GK+PRK+AIGGA+SKD FDRHGD
Sbjct: 298 FACTAFELATGDMLFAPKNGQGYSEDEDHLALMMELLGKIPRKVAIGGARSKDLFDRHGD 357

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW LDR+LVD+Y+FSE+DAREFA+FLVPLLDF PEKRPTAQQCLQHPWL+L 
Sbjct: 358 LKRIRRLKFWPLDRILVDRYKFSESDAREFADFLVPLLDFAPEKRPTAQQCLQHPWLNLT 417

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKV 327
           N   +ETK+KSN+EK+DVGMSKL+I+ 
Sbjct: 418 NLAANETKSKSNMEKLDVGMSKLQIEA 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531335|ref|XP_003534233.1| PREDICTED: serine/threonine-protein kinase SRPK1-like isoform 1 [Glycine max]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/329 (80%), Positives = 291/329 (88%), Gaps = 2/329 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLIKY+RYKGL LNKVREICK IL GLDYLHRE GIIH+DLKPEN+LLV
Sbjct: 119 MVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHREHGIIHSDLKPENVLLV 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP KDP+RSGLTPILERPEGSINGG  +++  +EKKLKRRA+RAVA IS R + +GG
Sbjct: 179 STIDPGKDPVRSGLTPILERPEGSINGGGVTSL--IEKKLKRRARRAVAKISGRSSPIGG 236

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           IE PK ER LDGID+RCKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL AGYSFSVDMWS
Sbjct: 237 IEAPKSERNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILHAGYSFSVDMWS 296

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FAC AFELATGDMLF PK GQGF EDEDHLALMMEL+GKMPRK+A  GA+SKD+FDRHGD
Sbjct: 297 FACIAFELATGDMLFTPKDGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGD 356

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           L+RIRRLKFW L +LLV +Y+FSE DA EF+EFL PLLDF PEKRPTAQQCLQHPWL   
Sbjct: 357 LRRIRRLKFWPLSKLLVVRYKFSERDAHEFSEFLSPLLDFAPEKRPTAQQCLQHPWLQGI 416

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
            ST +E +N+S+VEKVDVGMS L+IKVGK
Sbjct: 417 ESTPNEMRNESSVEKVDVGMSNLQIKVGK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531337|ref|XP_003534234.1| PREDICTED: serine/threonine-protein kinase SRPK1-like isoform 2 [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 264/329 (80%), Positives = 291/329 (88%), Gaps = 2/329 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLIKY+RYKGL LNKVREICK IL GLDYLHRE GIIH+DLKPEN+LLV
Sbjct: 134 MVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHREHGIIHSDLKPENVLLV 193

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP KDP+RSGLTPILERPEGSINGG  +++  +EKKLKRRA+RAVA IS R + +GG
Sbjct: 194 STIDPGKDPVRSGLTPILERPEGSINGGGVTSL--IEKKLKRRARRAVAKISGRSSPIGG 251

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           IE PK ER LDGID+RCKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL AGYSFSVDMWS
Sbjct: 252 IEAPKSERNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILHAGYSFSVDMWS 311

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FAC AFELATGDMLF PK GQGF EDEDHLALMMEL+GKMPRK+A  GA+SKD+FDRHGD
Sbjct: 312 FACIAFELATGDMLFTPKDGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGD 371

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           L+RIRRLKFW L +LLV +Y+FSE DA EF+EFL PLLDF PEKRPTAQQCLQHPWL   
Sbjct: 372 LRRIRRLKFWPLSKLLVVRYKFSERDAHEFSEFLSPLLDFAPEKRPTAQQCLQHPWLQGI 431

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
            ST +E +N+S+VEKVDVGMS L+IKVGK
Sbjct: 432 ESTPNEMRNESSVEKVDVGMSNLQIKVGK 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114475|ref|XP_002332363.1| predicted protein [Populus trichocarpa] gi|222874680|gb|EEF11811.1| predicted protein [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/329 (80%), Positives = 296/329 (89%), Gaps = 5/329 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLI+++ YKGL+L KVREICK ILTGLDYLHRELGIIHTDLKPENILL 
Sbjct: 119 MVLEFLGDSLLRLIRHNHYKGLQLEKVREICKCILTGLDYLHRELGIIHTDLKPENILLF 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDPIRSG+ PILERPEG++NGGST  M ++EKKLKRRAKRAVANIS RR SMGG
Sbjct: 179 STIDPAKDPIRSGIKPILERPEGNLNGGST--MNLIEKKLKRRAKRAVANISGRRDSMGG 236

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
             + K ER LDG+D+RCKVVDFGNAC A KQFA+EIQTRQYRAPEVIL++GYSFSVDMWS
Sbjct: 237 A-MQKSERSLDGVDVRCKVVDFGNACWAVKQFAKEIQTRQYRAPEVILQSGYSFSVDMWS 295

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FACTAFELATGDMLFAPK GQG+ EDEDHLALMMEL+GKMPRKIAIGGA SKDYFDRHGD
Sbjct: 296 FACTAFELATGDMLFAPKDGQGYSEDEDHLALMMELLGKMPRKIAIGGALSKDYFDRHGD 355

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW LDRLLV+KY+F ETDA+E AEFL PLLDFTPE RPTAQQCLQHPW +++
Sbjct: 356 LKRIRRLKFWPLDRLLVEKYKFPETDAQEIAEFLCPLLDFTPENRPTAQQCLQHPWFNIK 415

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
           + +++E  ++SNVEK+ VG+S L  KVGK
Sbjct: 416 SCSQNEMTSESNVEKLGVGVSNL--KVGK 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559181|ref|XP_003547879.1| PREDICTED: serine/threonine-protein kinase SRPK1-like [Glycine max]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/329 (78%), Positives = 293/329 (89%), Gaps = 2/329 (0%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLIKY+RYKGL L+KVREICK IL GLDYLHRE GIIH+DLKPEN+LLV
Sbjct: 119 MVLEFLGDSLLRLIKYNRYKGLPLDKVREICKCILIGLDYLHREHGIIHSDLKPENVLLV 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDP+RSGLTPILERPEG+INGG  +++  +EKKLKRRA+RAVA IS R + +GG
Sbjct: 179 STIDPAKDPVRSGLTPILERPEGNINGGGVTSL--IEKKLKRRARRAVAKISGRSSPIGG 236

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           IE PK +R LDGID+RCKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL+AGYSF+VDMWS
Sbjct: 237 IEAPKSDRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFAVDMWS 296

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           FAC AFELATGDMLF PK GQGF EDEDHLALMMEL+GKMPRK+A  GA+SKD+FDRHGD
Sbjct: 297 FACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATSGAKSKDFFDRHGD 356

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           LKRIRRLKFW L +LL+D+Y+FSE DA EF+EFL+PLLDF PEKRPTAQQCLQ PWL   
Sbjct: 357 LKRIRRLKFWPLSKLLIDRYKFSERDACEFSEFLLPLLDFAPEKRPTAQQCLQLPWLQGI 416

Query: 301 NSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
            ST +E +N+S+VEKV VGMS L+IKVGK
Sbjct: 417 ESTPNEMRNESSVEKVGVGMSNLQIKVGK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434086|ref|XP_004134827.1| PREDICTED: SRSF protein kinase 1-like [Cucumis sativus] gi|449491257|ref|XP_004158842.1| PREDICTED: SRSF protein kinase 1-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/330 (78%), Positives = 292/330 (88%), Gaps = 4/330 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLIKY+RY+ LELNKVREICK IL  LDYLHREL IIHTDLKPENILL+
Sbjct: 118 MVLEFLGDSLLRLIKYNRYRVLELNKVREICKCILVALDYLHRELNIIHTDLKPENILLL 177

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDP+RSG  PILERPEG+ NGG+T  M ++EKKLKRRA+RAV+ IS RR SMGG
Sbjct: 178 STIDPTKDPVRSGQAPILERPEGNPNGGTT--MNLIEKKLKRRARRAVSRISERRVSMGG 235

Query: 121 IELPKPE-RCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
              PKPE R LDGID+RCK+VDFGNAC A++QF EEIQTRQYRAPEVIL++GYS+SVDMW
Sbjct: 236 AT-PKPEDRKLDGIDLRCKIVDFGNACWADRQFMEEIQTRQYRAPEVILQSGYSYSVDMW 294

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           SF C AFELATGDM+F PK GQ + EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRHG
Sbjct: 295 SFGCIAFELATGDMMFTPKGGQDYSEDEDHLALMMELLGKMPRKIAIGGARSKDYFDRHG 354

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
           DLKRIRRLKFWSLDRLLV+KY+F+E DA+ FAEFL  +LDF PEKRPTAQQCLQHPWL+ 
Sbjct: 355 DLKRIRRLKFWSLDRLLVEKYKFTEADAQSFAEFLSLVLDFAPEKRPTAQQCLQHPWLNP 414

Query: 300 RNSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
           RN  + E KNK+ VEKV+VGMSKL+I+VGK
Sbjct: 415 RNLPQTEMKNKTEVEKVNVGMSKLQIRVGK 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496553|ref|XP_003517131.1| PREDICTED: probable serine/threonine-protein kinase sky1-like [Glycine max]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/330 (76%), Positives = 288/330 (87%), Gaps = 4/330 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MVLEFLGDSLLRLI+Y+RYKGL LNKVREICK +LTGLDYLH + G+IHTDLKPENILL 
Sbjct: 119 MVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCVLTGLDYLHTDRGMIHTDLKPENILLC 178

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           STIDP+KDP+RSGL+PILERPEG+ NGG TS   ++EK+L+RRA+ AVA IS RRASMGG
Sbjct: 179 STIDPAKDPLRSGLSPILERPEGNTNGGVTS---LIEKRLRRRARTAVAKISGRRASMGG 235

Query: 121 I-ELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           I +  K  R +DGID+RCK+VDFGNAC A+KQFAEEIQTRQYRAPEVIL+AGYSFSVDMW
Sbjct: 236 IGDAAKTGRNIDGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILKAGYSFSVDMW 295

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S AC AFELATGDMLF PK GQGF EDEDHLALMMEL+GKMPRKIA GGAQSKD+FDRHG
Sbjct: 296 SLACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATGGAQSKDFFDRHG 355

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
           DLKRIRRLKF  LD+LL DKY+FS  DA+EF+EFL+PL DF PEKRPTA+QCLQHPWL+ 
Sbjct: 356 DLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLQHPWLNY 415

Query: 300 RNSTRDETKNKSNVEKVDVGMSKLEIKVGK 329
             S  +E +N+S VEKVDVGMS L+I+V K
Sbjct: 416 MESPPNEMRNESAVEKVDVGMSNLKIRVEK 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2053938	440	AT2G17530 [Arabidopsis thalian	0.960	0.718	0.734	2.6e-125
TAIR|locus:2127903	439	AT4G35500 [Arabidopsis thalian	0.963	0.722	0.728	6.3e-124
TAIR|locus:2085151	529	SRPK4 "ser/arg-rich protein ki	0.592	0.368	0.571	2.1e-88
TAIR|locus:2172651	538	AT5G22840 [Arabidopsis thalian	0.750	0.459	0.476	9.2e-86
TAIR|locus:2082107	534	AT3G44850 [Arabidopsis thalian	0.522	0.322	0.610	1.5e-85
UNIPROTKB|B4DS61	639	SRPK1 "SFRS protein kinase 1,	0.553	0.284	0.5	3.3e-63
UNIPROTKB|H3BLV9	671	SRPK1 "SRSF protein kinase 1"	0.553	0.271	0.5	3.3e-63
UNIPROTKB|Q96SB4	655	SRPK1 "SRSF protein kinase 1"	0.553	0.277	0.5	3.3e-63
UNIPROTKB|Q5RD27	655	SRPK1 "SRSF protein kinase 1"	0.553	0.277	0.5	3.3e-63
UNIPROTKB|B7UCT2	655	SRPK1 "SFRS protein kinase 1"	0.498	0.250	0.530	8.8e-63

TAIR|locus:2053938 AT2G17530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 241/328 (73%), Positives = 276/328 (84%)

Query:     1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
             MVLEFLGDSLLRLIKY+RYKG+EL+KVREICK ILTGLDYLHRELG+IH+DLKPENILL 
Sbjct:   119 MVLEFLGDSLLRLIKYNRYKGMELSKVREICKCILTGLDYLHRELGMIHSDLKPENILLC 178

Query:    61 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
             STIDP+KDPIRSGLTPILE+PEG+ NG  TSTM ++E             IS RR S+ G
Sbjct:   179 STIDPAKDPIRSGLTPILEKPEGNQNG--TSTMNLIEKKLKRRAKKAAAKISGRRVSIVG 236

Query:   121 I-ELPKP-ERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
             + E PK  +R LDGIDMRCKVVDFGN C A+ +FAEEIQTRQYRAPEVIL++GYS+SVDM
Sbjct:   237 LSETPKKNKRNLDGIDMRCKVVDFGNGCWADNKFAEEIQTRQYRAPEVILQSGYSYSVDM 296

Query:   179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
             WSFACTAFELATGDMLFAPK G G+ EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRH
Sbjct:   297 WSFACTAFELATGDMLFAPKEGNGYGEDEDHLALMMELLGKMPRKIAIGGARSKDYFDRH 356

Query:   239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             GDLKRIRRLK+W LDRLL+DKY+  E +AREFA+FL P++DF PEKRPTAQQCLQHPWL+
Sbjct:   357 GDLKRIRRLKYWPLDRLLIDKYKLPEAEAREFADFLCPIMDFAPEKRPTAQQCLQHPWLN 416

Query:   299 LRNSTRDETKNKSNVEKVDVGMSKLEIK 326
             LR      T+N  N + ++  MS ++IK
Sbjct:   417 LR------TQN--NEDDIEGQMSNMQIK 436

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2127903 AT4G35500 [Arabidopsis thaliana (taxid:3702)]

 Score = 1218 (433.8 bits), Expect = 6.3e-124, P = 6.3e-124
 Identities = 239/328 (72%), Positives = 272/328 (82%)

Query:     1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
             MVLEFLGDSLLRLI+Y++YKGL+LNKVREIC+ ILTGLDYLHRELG+IH+DLKPENILL 
Sbjct:   120 MVLEFLGDSLLRLIRYNQYKGLKLNKVREICRCILTGLDYLHRELGMIHSDLKPENILLC 179

Query:    61 STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASM-G 119
             STIDP+KDP+RSGLTP+LE+PEG+ NGG+ STM ++E             IS RR SM  
Sbjct:   180 STIDPAKDPVRSGLTPLLEKPEGNANGGA-STMNLIEKKLKRRAKRAVAKISERRVSMVT 238

Query:   120 GIELP-KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
             G E   K E+ LDGIDMRCKVVDFGNAC A+KQFAEEIQTRQYRAPEVIL++GYSFSVDM
Sbjct:   239 GEEASSKTEKSLDGIDMRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILKSGYSFSVDM 298

Query:   179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
             WSF CTAFEL TGDMLFAPK G G+ EDEDHLALMMEL+GKMPRKIAIGGA+SKDYFDRH
Sbjct:   299 WSFGCTAFELVTGDMLFAPKDGNGYGEDEDHLALMMELLGKMPRKIAIGGAKSKDYFDRH 358

Query:   239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             GDLKRIRRLK+W LDRLL+DKY+  E +A+EFAEFL P+L+F PEKRPTAQQCL HPW+ 
Sbjct:   359 GDLKRIRRLKYWPLDRLLIDKYKLPEAEAKEFAEFLTPILEFAPEKRPTAQQCLDHPWM- 417

Query:   299 LRNSTRDETKNKSNVEKVDVGMSKLEIK 326
               N T   T+N  + E VD  M+ L IK
Sbjct:   418 --NVT---TQN--DAENVDDQMNNLHIK 438

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2085151 SRPK4 "ser/arg-rich protein kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 116/203 (57%), Positives = 150/203 (73%)

Query:   134 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 193
             D++CK+VDFGNAC   KQF  +IQTRQYR PEVIL + YS S D+WSFAC  FEL TGD+
Sbjct:   303 DLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDV 362

Query:   194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 253
             LF P SG  +  DEDHLALMMEL+G MPRKIA+GG  S+D+F+RHGDL+ IRRL+FW ++
Sbjct:   363 LFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN 422

Query:   254 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-----SLRNSTRDETK 308
             ++L +KY FSE DA + ++FLV +LDF PEKRPTA QCL HPW+     S++ S +DE  
Sbjct:   423 KVLTEKYEFSEQDANDLSDFLVSILDFVPEKRPTAAQCLLHPWINSGPRSIKPSLKDENS 482

Query:   309 NKSNVEK---VDVGMSKLEIKVG 328
             +K + EK    +     +E+K+G
Sbjct:   483 DKLDTEKNKRENEEQEAVEVKMG 505

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

TAIR|locus:2172651 AT5G22840 [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 9.2e-86, Sum P(2) = 9.2e-86
 Identities = 121/254 (47%), Positives = 158/254 (62%)

Query:    79 ERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIR-RASMGGIELPKPERCLDGIDMRC 137
             ER   +         T+              N+S + R +  G +  + ++ L  +D +C
Sbjct:   252 ERDSSNSEARPNGNATVERLEESSERVKDAENVSQKSRGNRRGSQSTR-QKLLADVDRKC 310

Query:   138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
             K+VDFGNAC   KQF  +IQTRQYR PEV+L + YS S DMWSFAC  FELATGD+LF P
Sbjct:   311 KLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTSADMWSFACICFELATGDVLFDP 370

Query:   198 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 257
              SG+ F  DEDHLALMMEL+G MPRKIA+GG  S+D+F+R G+L+ IRRL+FW L ++L 
Sbjct:   371 HSGENFERDEDHLALMMELLGMMPRKIALGGRHSRDFFNRQGELRHIRRLRFWPLSKVLT 430

Query:   258 DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-----SLRNSTRDETKNKSN 312
             DKY FSE DA    +F+ P+L F PEKRPTA QCL HPWL     SL+ S+  +   +  
Sbjct:   431 DKYDFSEEDAIAMQDFITPILQFVPEKRPTAAQCLTHPWLNPVPKSLKPSSSPQNPKEEE 490

Query:   313 VEKVDVGMSKLEIK 326
              E  D    K +++
Sbjct:   491 EEASDEDKDKEKVE 504

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2082107 AT3G44850 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
 Identities = 105/172 (61%), Positives = 136/172 (79%)

Query:   127 ERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAF 186
             ++ L  I+ +CK+VDFGNAC   KQF  +IQTRQYR PEV+L + YS S DMWSFAC  F
Sbjct:   311 QKLLSDIECKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTSADMWSFACICF 370

Query:   187 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 246
             ELATGD+LF P SG+ +  DEDHLALMMEL+G MPRKIA+GG  S+D+F+R G+L+ IRR
Sbjct:   371 ELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRQGELRHIRR 430

Query:   247 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             L+FW + ++L +KY FSE DA++ ++FLV +L+F PEKRPTA QCL+HPW +
Sbjct:   431 LRFWPISKVLKEKYDFSEQDAKDMSDFLVTILEFVPEKRPTAAQCLKHPWFN 482

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|B4DS61 SRPK1 "SFRS protein kinase 1, isoform CRA_f" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   457 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 516

Query:   177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   517 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 576

Query:   237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   577 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 636

Query:   297 LS 298
             L+
Sbjct:   637 LN 638

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BLV9 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   489 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 548

Query:   177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   549 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 608

Query:   237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   609 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 668

Query:   297 LS 298
             L+
Sbjct:   669 LN 670

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96SB4 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query:   177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query:   237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query:   297 LS 298
             L+
Sbjct:   653 LN 654

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0050684 "regulation of mRNA processing" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=TAS

GO:0035092 "sperm chromatin condensation" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0045087 "innate immune response" evidence=IC

GO:0045071 "negative regulation of viral genome replication" evidence=IDA

GO:0045070 "positive regulation of viral genome replication" evidence=IDA

UNIPROTKB|Q5RD27 SRPK1 "SRSF protein kinase 1" [Pongo abelii (taxid:9601)]

 Score = 503 (182.1 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query:   117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
             S  G  L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   
Sbjct:   473 STAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPA 532

Query:   177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
             D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F 
Sbjct:   533 DIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT 592

Query:   237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPW
Sbjct:   593 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 652

Query:   297 LS 298
             L+
Sbjct:   653 LN 654

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007243 "intracellular protein kinase cascade" evidence=ISS

GO:0050684 "regulation of mRNA processing" evidence=ISS

UNIPROTKB|B7UCT2 SRPK1 "SFRS protein kinase 1" [Sus scrofa (taxid:9823)]

 Score = 499 (180.7 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
 Identities = 87/164 (53%), Positives = 122/164 (74%)

Query:   135 MRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
             ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS AC AFELATGD L
Sbjct:   491 LQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYL 550

Query:   195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
             F P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GDLK I +LK W L  
Sbjct:   551 FEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFE 610

Query:   255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             +LV+KY +S+ +A  F +FL+P+L+  PEKR TA  CL+HPWL+
Sbjct:   611 VLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAADCLRHPWLN 654

GO:0050684 "regulation of mRNA processing" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000420 hypothetical protein (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-25
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	2e-22
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	7e-21
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-20
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-20
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-17
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-17
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-17
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	1e-16
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-16
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	3e-16
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	3e-15
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-14
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-14
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	5e-14
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	1e-13
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-13
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-13
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-13
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	4e-13
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	6e-13
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	9e-13
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-12
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-11
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-11
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-11
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-11
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	4e-11
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-11
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	7e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	7e-11
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	9e-11
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	1e-10
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	1e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-10
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-10
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-10
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-10
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	5e-10
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	9e-10
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-09
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	1e-09
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	3e-09
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	3e-09
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-09
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-09
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-09
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	5e-09
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	6e-09
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-08
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-08
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-08
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	1e-08
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-08
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-08
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-08
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-08
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-08
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-08
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-08
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	6e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-08
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	9e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	9e-08
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-07
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-07
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	3e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-07
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	5e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	9e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	1e-06
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	1e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-06
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	2e-06
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-06
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	4e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	4e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	7e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	7e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	8e-06
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	9e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	9e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	9e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	1e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-05
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	2e-05
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	3e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	4e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	4e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	4e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	5e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	5e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	6e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	7e-05
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	8e-05
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	1e-04
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-04
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	2e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	2e-04
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-04
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	3e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	4e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	4e-04
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	4e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	4e-04
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	5e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	6e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	6e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	6e-04
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	6e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	6e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	7e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	7e-04
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-04
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	7e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	7e-04
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	7e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	8e-04
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	9e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.001
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.001
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	0.001
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.001
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.001
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.001
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	0.001
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.001
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.001
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.001
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.001
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	0.002
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.002
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	0.002
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.002
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.002
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.002
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.002
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.003
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	0.003
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	0.003
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	0.003
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.003
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	0.003
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	0.003
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.003
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.004
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.004
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.004
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	0.004
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.004
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  100 bits (252), Expect = 7e-25
 Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 46/175 (26%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L   D   K+ DFG A + +  ++    + T +Y APEV+L  GY  +VD+WS  
Sbjct: 124 KPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLG 183

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
              +EL TG   F           +D L  + + IGK                       
Sbjct: 184 VILYELLTGKPPF---------PGDDQLLELFKKIGKPK--------------------- 213

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                 F         ++  S     E  + +  LL   PEKR TA++ LQHP+ 
Sbjct: 214 ----PPFPP------PEWDISP----EAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 97.3 bits (242), Expect = 2e-22
 Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 90/276 (32%)

Query: 36  TGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTI 95
             LDY H EL ++HTDLKPENIL+  T D   DP+ +   P                   
Sbjct: 242 VALDYFHTELHLMHTDLKPENILM-ETSDTVVDPVTNRALP------------------- 281

Query: 96  VEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE 155
                                         P+ C      R ++ D G  C         
Sbjct: 282 ------------------------------PDPC------RVRICDLGGCCDERHSRTAI 305

Query: 156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME 215
           + TR YR+PEV+L  G+ +S DMWS  C  +EL TG +L+         ++ +HL LM +
Sbjct: 306 VSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH------DNLEHLHLMEK 359

Query: 216 LIGKMPRKIAI--GGAQSKDYFDRHGDLK------------RIRRLKFWSLDRLLVDKYR 261
            +G++P + A   G  +++  ++  G L+            R R ++    D LL D   
Sbjct: 360 TLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCD--- 416

Query: 262 FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                       +  LL +  +KR  A+Q   HP++
Sbjct: 417 -----------LIYGLLHYDRQKRLNARQMTTHPYV 441

Length = 467

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 90.3 bits (225), Expect = 7e-21
 Identities = 54/181 (29%), Positives = 80/181 (44%), Gaps = 31/181 (17%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSF 181
           KPE  L       K+ DFG A   R+   + + + TR YRAPE++LR+  YS  VD+W+ 
Sbjct: 126 KPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWAL 185

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
            C   EL T   LF   S      + D L  +  ++G  P         +K  +     L
Sbjct: 186 GCIMAELYTLRPLFPGSS------EIDQLYKICSVLGT-P---------TKQDWPEGYKL 229

Query: 242 KRIRRLKF-----WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                 +F      SL +L+ +          E  + +  +L + P+KRPTA Q LQHP+
Sbjct: 230 ASKLGFRFPQFAPTSLHQLIPNASP-------EAIDLIKDMLRWDPKKRPTASQALQHPY 282

Query: 297 L 297
            
Sbjct: 283 F 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNA----CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KPE  L       K+ DFG A     R      + + TR YRAPE+++    Y   VD+W
Sbjct: 127 KPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVW 186

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           +  C   EL  G+ LF   S      D D L L+ + +G +P                H 
Sbjct: 187 AIGCIMAELLDGEPLFPGDS------DIDQLYLIQKCLGPLP--------------PSHQ 226

Query: 240 DL----KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           +L     R   + F    +    + R+    +    +FL   L   P++R T  + LQHP
Sbjct: 227 ELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHP 286

Query: 296 WL 297
           + 
Sbjct: 287 YF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 87.7 bits (218), Expect = 4e-20
 Identities = 46/177 (25%), Positives = 65/177 (36%), Gaps = 45/177 (25%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA--NKQFAEEIQ-TRQYRAPEVILRA-GYSFSVDMWS 180
           KPE  L   +   K+ DFG A +   +         T  Y APEV+L   GY   VD+WS
Sbjct: 125 KPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWS 184

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                +EL TG   F+ +                                     +    
Sbjct: 185 LGVILYELLTGKPPFSGE-------------------------------------NILDQ 207

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           L+ IRR+    L   L        + + E  + +   L+  P KRPTA++ LQHPW 
Sbjct: 208 LQLIRRI----LGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 47/161 (29%), Positives = 63/161 (39%), Gaps = 47/161 (29%)

Query: 138 KVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 195
           K++DFG + + +   A    + T  + APEVI    Y +  D+WS   TA ELA G    
Sbjct: 138 KLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEG---- 193

Query: 196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 255
            P     + E     AL           IA  G               +R  + WS    
Sbjct: 194 KPP----YSELPPMKALFK---------IATNGP------------PGLRNPEKWSD--- 225

Query: 256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                        EF +FL   L   PEKRPTA+Q L+HP+
Sbjct: 226 -------------EFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 80.7 bits (200), Expect = 3e-17
 Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 28/179 (15%)

Query: 138 KVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRA-GYSFSVDMWSFACTAFELAT 190
           K+ DFG A   +    E+        TR YRAPE++L +  Y+ ++D+WS  C   EL T
Sbjct: 143 KICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLT 202

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLK 248
              LF  +         D L L++E++G    +    I   ++++Y        +     
Sbjct: 203 RKPLFPGRDYI------DQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKK---- 252

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET 307
              L +L      F      E  + L  +L F P+KR TA + L HP+L+  +   DE 
Sbjct: 253 --PLSKL------FPGASP-EAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPEDEP 302

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 79.1 bits (196), Expect = 7e-17
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 51/191 (26%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAPE++L +  YS +VD+W
Sbjct: 125 KPQNILINRDGVLKLADFGLA-RAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIW 183

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 228
           S  C   E+ TG  LF   S      + D L  + +++G           K+P       
Sbjct: 184 SVGCIFAEMITGKPLFPGDS------EIDQLFKIFQILGTPTEESWPGVTKLPDY----- 232

Query: 229 AQSKDYFDRHG--DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 286
              K  F +    DL+++       LD   +D               L  +L + P KR 
Sbjct: 233 ---KPTFPKFPPKDLEKV----LPRLDPEGID--------------LLSKMLQYNPAKRI 271

Query: 287 TAQQCLQHPWL 297
           +A++ L+HP+ 
Sbjct: 272 SAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 36/196 (18%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--------CRANKQFAEEIQTRQYRAPEVILRAG-YSFS 175
           KP   L   D R K+ DFG A           N    + + TR YRAPE++L +  Y+  
Sbjct: 134 KPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKG 193

Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
           VDMWS  C   E+  G  LF   S        + L  ++E+IG    +            
Sbjct: 194 VDMWSVGCILGEMLLGKPLFPGTSTL------NQLEKIIEVIGPPSAE------------ 235

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDA-----REFAEFLVPLLDFTPEKRPTAQQ 290
               D++ I+     ++   L  + R    +       +  + L  LL F P KR TA++
Sbjct: 236 ----DIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEE 291

Query: 291 CLQHPWLSLRNSTRDE 306
            L+HP+++  ++  DE
Sbjct: 292 ALEHPYVAQFHNPSDE 307

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 77.2 bits (191), Expect = 2e-16
 Identities = 46/167 (27%), Positives = 60/167 (35%), Gaps = 50/167 (29%)

Query: 136 RCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
             K+ DFG A R       E       T  + APEVI    Y  + D+WS  CT  E+AT
Sbjct: 139 VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT 198

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
           G     P     + E  + +A +            IG +        H            
Sbjct: 199 GK---PP-----WSELGNPMAALY----------KIGSSGEPPEIPEH------------ 228

Query: 251 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                       SE    E  +FL   L   P+KRPTA + LQHP+L
Sbjct: 229 -----------LSE----EAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)

Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFA 196
           K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C   EL TG  LF 
Sbjct: 158 KILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLF- 216

Query: 197 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 256
           P S     +  D L  +M L+G  P +  +    S+   +    L ++ +  F  +    
Sbjct: 217 PGS-----DHIDQLKRIMNLVGT-PDEELLQKISSESARNYIQSLPQMPKKDFKEV---- 266

Query: 257 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
                FS  +     + L  +L   P+KR TA + L HP+L+  +   DE
Sbjct: 267 -----FSGANP-LAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDPEDE 310

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 74.4 bits (183), Expect = 3e-15
 Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 37/183 (20%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA-----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDM 178
           KP+  L       K+ DFG A RA     N  F+ E+ T  YRAP+V+L +  YS S+D+
Sbjct: 127 KPQNLLINKRGELKLADFGLA-RAFGIPVNT-FSNEVVTLWYRAPDVLLGSRTYSTSIDI 184

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---F 235
           WS  C   E+ TG  LF   +      +ED L  +  ++G        G +Q  +Y   F
Sbjct: 185 WSVGCIMAEMITGRPLFPGTN------NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTF 238

Query: 236 DR--HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
            R    DL+++    F   D L +D               L  LL   PE R +A   LQ
Sbjct: 239 PRYPPQDLQQL----FPHADPLGID--------------LLHRLLQLNPELRISAHDALQ 280

Query: 294 HPW 296
           HPW
Sbjct: 281 HPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 71.0 bits (175), Expect = 3e-14
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+  G  L  L+K  +   L  ++ R   + IL+ L+YLH   GI+H DLKPENILL
Sbjct: 74  LVMEYCEGGDLFDLLK--KRGRLSEDEARFYLRQILSALEYLH-SKGIVHRDLKPENILL 130

Query: 60  VST 62
              
Sbjct: 131 DED 133

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 30/179 (16%)

Query: 138 KVVDFGNACRANKQ------FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELAT 190
           K+ DFG A  A+ +        E + TR YRAPE++L   GY+ ++D+WS  C   E+ +
Sbjct: 146 KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLS 205

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIGGAQSKDYFDRHGDLKRIRRL 247
              LF  K      +    L L++ ++G  P +     I   ++++Y         I+ L
Sbjct: 206 NRPLFPGK------DYLHQLNLILGVLGT-PSQEDLNCIISLRARNY---------IKSL 249

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
            F    ++  +K  F   D +   + L  +L F P KR T ++ L HP+L   +   DE
Sbjct: 250 PFKP--KVPWNKL-FPNADPKAL-DLLDKMLTFNPHKRITVEEALAHPYLEQYHDPSDE 304

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 71.5 bits (175), Expect = 5e-14
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 24/179 (13%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGD 192
           D   K++DFG A + + +    + TR YRAPEVIL    Y+ +VD+WS  C   E+ TG 
Sbjct: 154 DCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK 213

Query: 193 MLFAPKSGQGFCEDEDHLALMMEL--IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
            LF         +  DHL  +ME+  +   P K  +   QS+D  +    L R R+  F 
Sbjct: 214 PLF---------KGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFR 264

Query: 251 SLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 308
           SL             +A   A   L  +L    E R TA + L HP+    +   DET+
Sbjct: 265 SL-----------LPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPEDETE 312

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 27/177 (15%)

Query: 125 KPERCLDGIDMRC-KVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KPE  L  I     K+ DFG+      +  + E I TR YRAPE +L  G Y   +D+W+
Sbjct: 127 KPENIL--IKDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWA 184

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
             C  FE+ +   LF      G   +E D +A + +++G    ++       K    RH 
Sbjct: 185 VGCVFFEILSLFPLF-----PG--TNELDQIAKIHDVLGTPDAEV-----LKKFRKSRHM 232

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           +     +     L +LL +        + E  + L  LL + P++R TA+Q L+HP+
Sbjct: 233 NYNFPSKKGTG-LRKLLPNA-------SAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 44/179 (24%), Positives = 59/179 (32%), Gaps = 56/179 (31%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L   D   K+ DFG   +              T +Y APEV+L  GY  +VD WS
Sbjct: 120 KPENILLDADGHIKLTDFG-LAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWS 178

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                +E+ TG   F       + ED      + E I                       
Sbjct: 179 LGVLLYEMLTGKPPF-------YAEDR---KEIYEKI----------------------- 205

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPW 296
                          L D  RF E  + E  + +  LL   P KR     A++   HP+
Sbjct: 206 ---------------LKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPF 249

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 34/183 (18%)

Query: 125 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KPE  L  I+     K+ DFG   R+     + +   + TR YRAPE++L   GYS  VD
Sbjct: 125 KPENLL--INTEGVLKLADFG-LARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVD 181

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   EL +   LF  KS      + D L  +   +G    ++          +  
Sbjct: 182 IWSVGCIFAELLSRRPLFPGKS------EIDQLFKIFRTLGTPDPEVWPKFTSLARNY-- 233

Query: 238 HGDLKRIRRLKFW---SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                            L +L  +    +   A    + L  +L + P KR TA+Q L H
Sbjct: 234 ------KFSFPKKAGMPLPKLFPN----ASPQAL---DLLSQMLHYDPHKRITAEQALAH 280

Query: 295 PWL 297
           P+ 
Sbjct: 281 PYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 41/184 (22%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 178
           KP+  L   D + K+ DFG A    + ++ E+       T  YRAPEV+L++ Y+  VDM
Sbjct: 134 KPQNILVTSDGQVKIADFGLA----RIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDM 189

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-----MPRKIAIGGAQSKD 233
           WS  C   EL     LF   S      + D L  + ++IG       PR +++     + 
Sbjct: 190 WSVGCIFAELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSL----PRS 239

Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
            F  +          F              E       + L  +L F P KR +A + LQ
Sbjct: 240 SFPSYT---PRSFKSF------------VPEICEEG-LDLLKKMLTFNPHKRISAFEALQ 283

Query: 294 HPWL 297
           HP+ 
Sbjct: 284 HPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 68.6 bits (168), Expect = 4e-13
 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 29/192 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-------IQTRQYRAPEVILR-AGYSFSV 176
           KP   L   D   K+ DFG A   ++   E        + TR YRAPE++L    Y+ ++
Sbjct: 132 KPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAI 191

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 234
           D+WS  C   EL     +F    G+ +    D L  +++++G    +    IG  ++++Y
Sbjct: 192 DVWSVGCILAELLGRKPVF---KGKDYV---DQLNQILQVLGTPDEETLSRIGSPKAQNY 245

Query: 235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                 L  I +  F S+       +  +   A    + L  LL F P KR + ++ L+H
Sbjct: 246 IR---SLPNIPKKPFESI-------FPNANPLA---LDLLEKLLAFDPTKRISVEEALEH 292

Query: 295 PWLSLRNSTRDE 306
           P+L++ +   DE
Sbjct: 293 PYLAIWHDPDDE 304

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 32/210 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNA-CRANKQ------FAEEIQTRQYRAPEVILRAG-YSFSV 176
           KP   L   D   ++ DFG A   ++          E + TR YRAPE++L    Y+ ++
Sbjct: 134 KPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAI 193

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 234
           DMWS  C   E+     LF  K+          L L++ ++G    ++   IG  + + Y
Sbjct: 194 DMWSVGCIFAEMLGRRQLFPGKNYVH------QLKLILSVLGSPSEEVLNRIGSDRVRKY 247

Query: 235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                +L R + + +  +       +  +  +A +    L  +L F PE+R T +Q LQH
Sbjct: 248 IQ---NLPRKQPVPWSKI-------FPKASPEALDL---LSQMLQFDPEERITVEQALQH 294

Query: 295 PWLSLRNSTRDETKNKSNVEKVDVGMSKLE 324
           P+L+  +   DE          D     +E
Sbjct: 295 PFLAQYHDPDDEPTCPP---PFDFDFEAIE 321

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 20/175 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNACR----ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L   +   K+ DFG A      +N  + E + TR YR+PE++L A Y  +VDMWS
Sbjct: 127 KPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWS 186

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   EL+ G  LF  +S      + D L  + +++G +P +      Q K ++     
Sbjct: 187 VGCILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAE------QMKLFYSN--- 231

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
             R   L+F +++     + R+    +    + +  LL   P  R   +QCL HP
Sbjct: 232 -PRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHP 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL 216
           TR YR PE++L    Y+ +VD+W   C   E+ T   +   KS      D D L L+ +L
Sbjct: 189 TRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKS------DIDQLHLIFKL 242

Query: 217 IG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA 271
            G       P   ++ G +    F  +    R    +F  L    +D             
Sbjct: 243 CGTPTEETWPGWRSLPGCEGVHSFTNY---PRTLEERFGKLGPEGLD------------- 286

Query: 272 EFLVPLLDFTPEKRPTAQQCLQHPW 296
             L  LL   P KR TA   L+HP+
Sbjct: 287 -LLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 54/179 (30%), Positives = 73/179 (40%), Gaps = 26/179 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP   L   D   K+ DFG A      N++   ++ TR YRAPE++  A  Y   VDMWS
Sbjct: 129 KPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWS 188

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDRHG 239
             C   EL           G     D D L  + E +G  P +    G  S  DY     
Sbjct: 189 VGCIFAELLLRVPFLP---GDS---DIDQLGKIFEALGT-PTEENWPGVTSLPDY----- 236

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                  ++F       + K  F    + +  + L  LL   P KR TA+Q L+HP+ S
Sbjct: 237 -------VEFKPFPPTPL-KQIFP-AASDDALDLLQRLLTLNPNKRITARQALEHPYFS 286

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+  G  L   +  SR   L  ++ ++I   IL GL+YLH   GIIH DLKPENILL
Sbjct: 75  LVMEYCEGGDLFDYL--SRGGPLSEDEAKKIALQILRGLEYLHSN-GIIHRDLKPENILL 131

Query: 60  VST 62
              
Sbjct: 132 DEN 134

Length = 260

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 28/188 (14%)

Query: 125 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSF 181
           KP   L  I+  C  K+ DFG A   + Q    + TR YRAPE++L    Y   VD+WS 
Sbjct: 135 KPSNIL--INENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSA 192

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHL---ALMMELIGKMPRKIAIGGAQSKDYFDRH 238
            C   E+  G  LF  K         DH+   +++ +L+G  P  + I    S++     
Sbjct: 193 GCIFAEMLEGKPLFPGK---------DHVNQFSIITDLLGTPPDDV-INTICSENTLRFV 242

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             L +   + F         K++ ++  A +  E    +L F P+KR +A + L HP+L+
Sbjct: 243 QSLPKREPVPFSE-------KFKNADPSAIDLLE---KMLVFDPQKRISAAEALAHPYLA 292

Query: 299 LRNSTRDE 306
             +   DE
Sbjct: 293 PYHDPTDE 300

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+  G SL  L+K      L  +++  I   IL GL+YLH   GIIH DLKPENILL
Sbjct: 68  LVMEYCEGGSLKDLLK-ENEGKLSEDEILRILLQILEGLEYLHSN-GIIHRDLKPENILL 125

Query: 60  VSTID 64
            S   
Sbjct: 126 DSDNG 130

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 20/141 (14%)

Query: 158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE-DHLALMME 215
           T  YR PE++L A  Y   VDMWS  C   EL  G  +F     QG    E + L  + E
Sbjct: 164 TLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIF-----QG--STELEQLEKIFE 216

Query: 216 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLV 275
           L G  P      G     +F+   +LK  +  K     R L +   F         + L 
Sbjct: 217 LCGS-PTDENWPGVSKLPWFE---NLKPKKPYK-----RRLREF--FKHLIDPSALDLLD 265

Query: 276 PLLDFTPEKRPTAQQCLQHPW 296
            LL   P+KR +A Q LQH +
Sbjct: 266 KLLTLDPKKRISADQALQHEY 286

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 21/178 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNA----CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP   L   +   K+ DFG A       +K   +E+ T+ YRAPE+++ +  Y+ +VD+W
Sbjct: 130 KPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIW 189

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   EL    +LF  +S          L L+ +L+G  P   A+  A       R  
Sbjct: 190 SVGCIFAELLGRRILFQAQS------PIQQLDLITDLLGT-PSLEAMRSACEG---ARAH 239

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            L+   +    SL  L    Y  S     E    L  +L F P+KR +A   L HP+L
Sbjct: 240 ILRGPHKPP--SLPVL----YTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYL 291

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 29/175 (16%)

Query: 138 KVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 195
           K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  C   E+  G +LF
Sbjct: 158 KILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLF 217

Query: 196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR-----RLKFW 250
                       DH       I +  + I   G  S ++  R     R       +   +
Sbjct: 218 PGT---------DH-------IDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGY 261

Query: 251 SLDRLLVDKYRFSETD------AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
           S + L  D     +++      A +  + L  +L   PEKR +    LQHP++++
Sbjct: 262 SFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV 316

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 29/169 (17%)

Query: 138 KVVDFGNA---CRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDM 193
           K+ DFG A           E + TR YRAPE++L  + Y+ ++D+WS  C   EL     
Sbjct: 148 KICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKP 207

Query: 194 LFAPKSGQGFCEDEDH---LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR-IRRLKF 249
           LF  K         D+   L L+ EL+G  P +  +G       F R+   +R IR L +
Sbjct: 208 LFPGK---------DYVHQLKLITELLGS-PSEEDLG-------FIRNEKARRYIRSLPY 250

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
               +     +  +   A +  E    +L F P KR T ++ L HP+L+
Sbjct: 251 TP-RQSFARLFPHANPLAIDLLE---KMLVFDPSKRITVEEALAHPYLA 295

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 62.5 bits (150), Expect = 7e-11
 Identities = 47/201 (23%), Positives = 67/201 (33%), Gaps = 48/201 (23%)

Query: 125 KPERCL-DGIDMRCKVVDFGNACRA---------NKQFAEEIQTRQYRAPEVIL---RAG 171
           KPE  L D      K++DFG A                +  + T  Y APEV+L    A 
Sbjct: 128 KPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAY 187

Query: 172 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS 231
            S S D+WS   T +EL TG   F         E E + +   +                
Sbjct: 188 ASSSSDIWSLGITLYELLTGLPPF---------EGEKNSSATSQT--------------- 223

Query: 232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
                    LK I  L   SL   L       E  ++  ++ L  LL   P+ R ++   
Sbjct: 224 ---------LKIILELPTPSLASPL--SPSNPELISKAASDLLKKLLAKDPKNRLSSSSD 272

Query: 292 LQHPWLSLRNSTRDETKNKSN 312
           L H  L+       +  +   
Sbjct: 273 LSHDLLAHLKLKESDLSDLLK 293

Length = 384

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 21/178 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L       K+ DFG A RA    +K ++ E+ T  YR P+V+L +  YS S+DMW
Sbjct: 130 KPQNLLISERGELKLADFGLA-RAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMW 188

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C  +E+ATG  LF      G  + ED L  +  ++G  P +    G  S   F  + 
Sbjct: 189 GVGCIFYEMATGRPLFP-----GSTDVEDQLHKIFRVLG-TPTEETWPGVSSNPEFKPY- 241

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                    F+    L+    R          E  +  L + P+KR +A + ++HP+ 
Sbjct: 242 ------SFPFYPPRPLINHAPRLD--RIPHGEELALKFLQYEPKKRISAAEAMKHPYF 291

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGD 192
           D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C   E+ TG 
Sbjct: 153 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK 212

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 252
            LF  K      +  D L  ++++ G +P    +   + K        L +  R  F +L
Sbjct: 213 TLFKGK------DYLDQLTQILKVTG-VPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTL 265

Query: 253 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 311
                    F +   +   + L  +L+   +KR TA + L+HP+        +ET+ + 
Sbjct: 266 ---------FPKASPQA-VDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEETEQQP 314

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 147 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 206

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      L
Sbjct: 207 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 257

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 301
            ++ ++ F        + +  +   A    + L  +L    +KR TA Q L H + +  +
Sbjct: 258 TQMPKMNF-------ANVFIGANPLA---VDLLEKMLVLDSDKRITAAQALAHAYFAQYH 307

Query: 302 STRDE 306
              DE
Sbjct: 308 DPDDE 312

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 31/182 (17%)

Query: 125 KPERCLDGIDMRCKVVDFG----NACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP   L   D   K+ DFG     +    + ++ ++ TR YRAPE++  A  Y   VD+W
Sbjct: 126 KPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLW 185

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY----F 235
           +  C   EL  G  LF  ++      D + LA++   +G    +   G     DY    F
Sbjct: 186 AVGCIFAELLNGSPLFPGEN------DIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITF 239

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                 K I       L+ +      F +       + L  LL + P KR +A + L+HP
Sbjct: 240 PES---KPIP------LEEI------FPDASPEAL-DLLKGLLVYDPSKRLSAAEALRHP 283

Query: 296 WL 297
           + 
Sbjct: 284 YF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 32/190 (16%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   +++DFG A +A+ +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 145 KPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 204

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDR---- 237
              EL  G  LF    G  +    D L  +ME++G    ++   I    ++ Y       
Sbjct: 205 IMAELLKGKALF---PGNDYI---DQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHM 258

Query: 238 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DLK+I    F   + L +D               L  +L    +KR +A + L HP+
Sbjct: 259 PQQDLKKI----FRGANPLAID--------------LLEKMLVLDSDKRISASEALAHPY 300

Query: 297 LSLRNSTRDE 306
            S  +   DE
Sbjct: 301 FSQYHDPEDE 310

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 27/178 (15%)

Query: 125 KPERCL-DGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAG-YSFSVDM 178
           KP+  L D      K+ D G   RA     K +  EI T  YRAPEV+L +  YS  VD+
Sbjct: 137 KPQNLLVDKQKGLLKIADLGLG-RAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDI 195

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS  C   E++    LF      G  E +  L +  +L+G    ++  G ++ +D+ +  
Sbjct: 196 WSVGCIFAEMSRKQPLFP-----GDSELQQLLHI-FKLLGTPTEQVWPGVSKLRDWHE-- 247

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                      W    L        +    E  + L  +L + P KR +A+  L HP+
Sbjct: 248 --------FPQWKPQDL---SRAVPDLSP-EGLDLLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 125 KPERCL-DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KPE  L D  + + K+ DFG +             + T  Y APEV+L  G YS   D+W
Sbjct: 119 KPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIW 178

Query: 180 SFACTAFEL 188
           S     +EL
Sbjct: 179 SLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 59.7 bits (144), Expect = 5e-10
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 28/187 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 150 KPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 209

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   EL  G ++F     QG     DH       I +  + I   G  S ++ +R     
Sbjct: 210 CIMGELVKGSVIF-----QG----TDH-------IDQWNKVIEQLGTPSAEFMNRLQPTV 253

Query: 243 R---IRRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R ++   S + L  D    SE++       +  + L  +L   P+KR +  + L
Sbjct: 254 RNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEAL 313

Query: 293 QHPWLSL 299
           +HP++++
Sbjct: 314 RHPYITV 320

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 58.9 bits (142), Expect = 9e-10
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +  + LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINV 316

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFPGT---------DHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256

Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316

Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 29/182 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVI--LRAGYSFSV 176
           KP+  L   D + K+ DFG A  A         + + + TR YRAPE+     + Y+ ++
Sbjct: 130 KPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAI 189

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 234
           D+WS  C   E+ TG  LF  K+          L L+ +L+G    +    +   +++ Y
Sbjct: 190 DIWSIGCIFAEVLTGKPLFPGKNVV------HQLDLITDLLGTPSPETISRVRNEKARRY 243

Query: 235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                 +++ + + F           +F   D       L  LL F P+ RPTA++ L  
Sbjct: 244 L---SSMRKKQPVPFSQ---------KFPNADPLAL-RLLERLLAFDPKDRPTAEEALAD 290

Query: 295 PW 296
           P+
Sbjct: 291 PY 292

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 23/175 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 135 KPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVG 194

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      + D L  + +LIG +P          +D + R   L 
Sbjct: 195 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIG-LP---------PEDDWPRDVTLP 238

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              R  F       V      E +    A+ L+ +L F P KR +A + LQHP+ 
Sbjct: 239 ---RGAFSPRGPRPVQSV-VPEIEESG-AQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 42/170 (24%), Positives = 61/170 (35%), Gaps = 60/170 (35%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL-------VSTIDPSKDPIRSGLTPILERPEGSIN 86
           +L  L+YLH  LGI++ DLKPENILL       +S  D SK   +S + P          
Sbjct: 112 VLLALEYLHL-LGIVYRDLKPENILLHESGHIMLSDFDLSK---QSDVEPPPVSKALR-- 165

Query: 87  GGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC 146
                         K   + +V +I     S                    +     N+ 
Sbjct: 166 --------------KGSRRSSVNSIPSETFS-------------------EEPSFRSNSF 192

Query: 147 RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 196
                    + T +Y APEVI   G+  +VD W+     +E     ML+ 
Sbjct: 193 ---------VGTEEYIAPEVISGDGHGSAVDWWTLGILLYE-----MLYG 228

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            VLE+   G+ LL+ I+   Y  L+    R     IL  L+YLH   GIIH DLKPENIL
Sbjct: 79  FVLEYAPNGE-LLQYIRK--YGSLDEKCTRFYAAEILLALEYLHS-KGIIHRDLKPENIL 134

Query: 59  L 59
           L
Sbjct: 135 L 135

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            LE++ G SL  L+K  ++  L    +R+  + IL GL YLH   GI+H D+K  NIL+
Sbjct: 79  FLEYVSGGSLSSLLK--KFGKLPEPVIRKYTRQILEGLAYLHSN-GIVHRDIKGANILV 134

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 43/173 (24%), Positives = 61/173 (35%), Gaps = 60/173 (34%)

Query: 138 KVVDFGNACRANKQ---FAEEIQ----TRQYRAPEVILRA---GYSFSVDMWSFACTAFE 187
           K+ DFG A +         EE+Q    T  Y APEVI      G+  + D+WS  C   E
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198

Query: 188 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIGGAQSKDYFDRHGDLKRI 244
           +ATG     P S       ++   +M  +       I        + KD+ DR       
Sbjct: 199 MATGK---RPWSEL-----DNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDR------- 243

Query: 245 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                                            L+  P+KRPTA + LQHP++
Sbjct: 244 --------------------------------CLESDPKKRPTASELLQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
            V E++  +L +L+K  + K    + +R I   IL GL ++H+  G  H DLKPEN+L+ 
Sbjct: 75  FVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK-HGFFHRDLKPENLLVS 133

Query: 61  ST 62
             
Sbjct: 134 GP 135

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EF  G SL  L+K S  + L  +++  +CK +L GL+YLH   GIIH D+K  NILL
Sbjct: 74  IVMEFCSGGSLKDLLK-STNQTLTESQIAYVCKELLKGLEYLH-SNGIIHRDIKAANILL 131

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 30/168 (17%)

Query: 138 KVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDM 193
           K+ DFG A       K + + + T  YRAPE++L A  YS ++DMWS  C   EL T   
Sbjct: 146 KICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKP 205

Query: 194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-----GAQSKDYFDRHGDLKRIRRLK 248
           LF  KS      + D L  + +L+G    KI  G     GA+ K  F ++   +  ++  
Sbjct: 206 LFPGKS------EIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKT-FTKYPYNQLRKKFP 258

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             SL     D               L  LL + P KR +A+  L+HP+
Sbjct: 259 ALSLSDNGFD--------------LLNRLLTYDPAKRISAEDALKHPY 292

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 26/110 (23%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ----------YRAPEVILRAGYSF 174
           KPE  L   +   K+VDFG        FA+++++ Q          Y APE+IL  GY F
Sbjct: 120 KPENLLLDSNGYVKLVDFG--------FAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDF 171

Query: 175 SVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI 224
           SVD WS     +EL TG           F ED++    +   I K   K+
Sbjct: 172 SVDYWSLGILLYELLTG--------RPPFGEDDEDPMEIYNDILKGNGKL 213

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E+    L + +   R   L  N ++ I   +L GL Y H    I+H DLKP+NIL+
Sbjct: 75  LVFEYCDMDLKKYLD-KRPGPLSPNLIKSIMYQLLRGLAYCHSH-RILHRDLKPQNILI 131

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 46/180 (25%), Positives = 63/180 (35%), Gaps = 62/180 (34%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFEL 188
             K+ DFG A     Q  +E   R        + APEVI R  Y   VD+WS      E+
Sbjct: 154 SVKLADFGFAA----QLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEM 209

Query: 189 ATGD---MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 245
           A G+   +   P               +  L       I   G               I 
Sbjct: 210 AEGEPPYLREPP---------------LRAL-----FLITTKG---------------IP 234

Query: 246 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD 305
            LK         +  ++S     EF +FL   L   PEKRP+A++ LQHP+L       +
Sbjct: 235 PLK---------NPEKWSP----EFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACPKEE 281

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 47/179 (26%), Positives = 65/179 (36%), Gaps = 50/179 (27%)

Query: 125 KPERCLDGIDMRCKVVDFG-------NACRANKQFAEEIQTRQYRAPEVI-LRAGYSFSV 176
           K    L G D   K+ DFG          R  K     + T  + APEV+    GY F  
Sbjct: 129 KAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKA 188

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WSF  TA ELATG    AP S          + ++M  +   P  +  G         
Sbjct: 189 DIWSFGITAIELATGA---APYS------KYPPMKVLMLTLQNDPPSLETG--------- 230

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                                D  ++S    + F + +   L   P KRPTA++ L+H 
Sbjct: 231 --------------------ADYKKYS----KSFRKMISLCLQKDPSKRPTAEELLKHK 265

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 49/163 (30%)

Query: 138 KVVDFGNACRANKQ-FAEEIQ-TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDML 194
           K+ DFG A +  +  FA+  + +  + APEVI + G Y  + D+WS  CT  E+ATG   
Sbjct: 142 KLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATG--- 198

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
             P   Q            +E +  + +   IG         R  +L  I          
Sbjct: 199 -KPPWSQ------------LEGVAAVFK---IG---------RSKELPPI---------- 223

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                    +  + E  +F++  L   P  RPTA + L+HP++
Sbjct: 224 --------PDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 131 KPQNLLINERGELKLADFGLA-RAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMW 189

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C  FE+A+G  LF P S       ED L L+  L+G  P +    G  S D F  + 
Sbjct: 190 GVGCIFFEMASGRPLF-PGSTV-----EDELHLIFRLLG-TPTEETWPGISSNDEFKNYN 242

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             K       +    L+    R       E  E L   L +  +KR +A++ ++H + 
Sbjct: 243 FPK-------YKPQPLINHAPRLDT----EGIELLTKFLQYESKKRISAEEAMKHAYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 28/166 (16%)

Query: 138 KVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDM 193
           K+ DFG A       K    ++ T  YRAPE++L    Y+ ++DMW+  C   EL     
Sbjct: 148 KIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP 207

Query: 194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 253
           L   KS      + + L L+++L+G     I  G       F     + +   L     +
Sbjct: 208 LLPGKS------EIEQLDLIIQLLGTPNESIWPG-------FSDLPLVGKF-TLPKQPYN 253

Query: 254 RLLVDKYRF---SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
            L   K++F   SE   R     L  LL + P+KR TA++ L+  +
Sbjct: 254 NL---KHKFPWLSEAGLR----LLNFLLMYDPKKRATAEEALESSY 292

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 50/198 (25%), Positives = 76/198 (38%), Gaps = 57/198 (28%)

Query: 134 DMRCKVVDFGNACRANKQF------AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAF 186
           D+  K+ DFG A   +  +      +E + T+ YR+P ++L    Y+ ++DMW+  C   
Sbjct: 151 DLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 210

Query: 187 ELATGDMLFAPKSGQGFCEDEDH-LALMM---------------ELIGKMPRKIAIGGAQ 230
           E+ TG  LFA            H L  M                EL+  +P  +   G +
Sbjct: 211 EMLTGKPLFA----------GAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGE 260

Query: 231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ 290
                         RR     L  LL            E  +FL  +L F P  R TA++
Sbjct: 261 -------------PRR----PLRDLL-------PGVNPEALDFLEQILTFNPMDRLTAEE 296

Query: 291 CLQHPWLSLRNSTRDETK 308
            L HP++S  +   DE  
Sbjct: 297 ALMHPYMSCYSCPFDEPV 314

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 24/178 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 179
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+++L    YS  +DMW
Sbjct: 131 KPQNLLINERGELKLADFGLA-RAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMW 189

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C  +E++TG  LF P S       E+ L  +  ++G  P +    G  S + F  + 
Sbjct: 190 GVGCIFYEMSTGRPLF-PGSTV-----EEQLHFIFRILG-TPTEETWPGILSNEEFKSYN 242

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             K       +  D L     R  ++D    AE L  LL F   KR +A++ ++HP+ 
Sbjct: 243 YPK-------YRADCLHNHAPRL-DSDG---AELLSKLLQFEGRKRISAEEAMKHPYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           VLE++ G SL  L+K  +   +    +  I + IL GLDYLH +  IIH D+KP N+L+
Sbjct: 77  VLEYMDGGSLADLLK--KVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLI 133

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 25/177 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 127 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 185

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G     +  G     DY     
Sbjct: 186 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSLPDY---KP 236

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              +  R  F  +   L       + D R   + L  +L + P KR +A+  L HP+
Sbjct: 237 SFPKWARQDFSKVVPPL-------DEDGR---DLLSQMLHYDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 46/166 (27%), Positives = 61/166 (36%), Gaps = 54/166 (32%)

Query: 137 CKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 193
            K+ DFG A + N   K  A  + T  + APEVI  +G S + D+WS  CT  EL T   
Sbjct: 138 VKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLT--- 194

Query: 194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR--HGDLKRIRRLKFWS 251
                                   G  P            Y+D      L RI +     
Sbjct: 195 ------------------------GNPP------------YYDLNPMAALFRIVQD---- 214

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                 D     E  + E  +FL+      P  RPTA+Q L+HPW+
Sbjct: 215 ------DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 37/184 (20%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L +  YS  VD+W
Sbjct: 126 KPQNLLIDREGALKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIW 184

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS----KDYF 235
           S  C   E+     LF   S      + D L  +   +G  P +    G  S    K  F
Sbjct: 185 SIGCIFAEMVNRRPLFPGDS------EIDQLFRIFRTLG-TPDEDVWPGVTSLPDYKPTF 237

Query: 236 DR--HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
            +    DL ++      +LD   +D               L  +L + P KR +A+  LQ
Sbjct: 238 PKWARQDLSKV----VPNLDEDGLD--------------LLSKMLVYDPAKRISAKAALQ 279

Query: 294 HPWL 297
           HP+ 
Sbjct: 280 HPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 33/180 (18%)

Query: 136 RCKVVDFGNACRAN---KQFAEE---IQTRQYRAPEVILRAG-YSFSVDMWSFACTAFEL 188
             K+ D G A   N   K  A+    + T  YRAPE++L A  Y+ ++D+W+  C   EL
Sbjct: 150 VVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAEL 209

Query: 189 ATGDMLFAPKSGQGFCEDED-------HLALMMELIGKMPRKIAIGGAQSKDYFD----- 236
            T + +F          +             +  +   +      G    KD+ D     
Sbjct: 210 LTLEPIF-------KGREAKIKKSNPFQRDQLERIFEVL------GTPTEKDWPDIKKMP 256

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
            +  L +  + K +  + L     +  + D++ F   L  LL++ P KR TA++ L+HP+
Sbjct: 257 EYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFD-LLRKLLEYDPTKRITAEEALEHPY 315

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 48/164 (29%)

Query: 137 CKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM 193
            K+ DFG + +     A+    I T  + APEVI   GY+   D+WS   TA E+A G  
Sbjct: 138 AKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEG-- 195

Query: 194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 253
              P S       + H    + +I   P         +            +   + WS  
Sbjct: 196 -KPPYS-------DIHPMRAIFMIPNKP-------PPT------------LSDPEKWS-- 226

Query: 254 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                          EF +F+   L   PE+RP+A Q LQHP++
Sbjct: 227 --------------PEFNDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 24/177 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + ++ E+ T  YR P+V+  A  YS S+DMW
Sbjct: 126 KPQNLLINKNGELKLADFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMW 184

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   ELA       P +     + +D L  +  L+G    +   G ++  DY     
Sbjct: 185 SAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEESWPGVSKLPDY----K 235

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                           +V K   +  D       L  LL   P +R +A++ LQHP+
Sbjct: 236 PYPMYPATTSLV---NVVPKLNSTGRD------LLQNLLVCNPVQRISAEEALQHPY 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V E++  +LL L++ S   GL  + VR     +L  + Y H    IIH D+KPENIL
Sbjct: 77  LVFEYVERTLLELLEASPG-GLPPDAVRSYIWQLLQAIAYCHS-HNIIHRDIKPENIL 132

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 46/135 (34%)

Query: 163 APEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR 222
           APEVI ++GY    D+WS   TA ELA G+    P S      D   + ++  +    P 
Sbjct: 166 APEVIKQSGYDEKADIWSLGITAIELAKGE---PPLS------DLHPMRVLFLIPKNNPP 216

Query: 223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTP 282
            +           + +                       FS    + F +F+   L+  P
Sbjct: 217 SL-----------EGNK----------------------FS----KPFKDFVSLCLNKDP 239

Query: 283 EKRPTAQQCLQHPWL 297
           ++RP+A++ L+H ++
Sbjct: 240 KERPSAKELLKHKFI 254

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 41/186 (22%)

Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWS 180
           KPE  L       K+ DFG A       + + + + TR YRAPE+++    Y  +VD+W+
Sbjct: 127 KPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWA 186

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD---- 236
             C   E+ TG+ LF   S      D D L  +++ +G +  +        ++ F     
Sbjct: 187 VGCLVTEMLTGEPLFPGDS------DIDQLYHIIKCLGNLIPR-------HQEIFQKNPL 233

Query: 237 ----RHGDLKRIRRL--KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ 290
               R  ++K I  L  +F  L  L++D                   L   P+ RP++ Q
Sbjct: 234 FAGMRLPEVKEIEPLEKRFPKLSGLVLD--------------LAKQCLRIDPDDRPSSSQ 279

Query: 291 CLQHPW 296
            L H +
Sbjct: 280 LLHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 23/177 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 180
           KPE  L     + K+ DFG A         + + + TR YRAPE+++    Y   VD+W+
Sbjct: 127 KPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWA 186

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PRKIAIGGAQSKDYFDRHG 239
             C   EL TG  L+  KS      D D L L+ + +G + PR   I    +  +F   G
Sbjct: 187 IGCVFAELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQI--FSTNQFF--KG 236

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                  L     +     + +F    +   + FL   L   P +R + ++ L+HP+
Sbjct: 237 -------LSIPEPETREPLESKFPNISSPALS-FLKGCLQMDPTERLSCEELLEHPY 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V EF+   L +LIK  +  GL  + ++     +L GL + H   GI+H DLKPEN+L+ 
Sbjct: 75  LVFEFMDTDLYKLIKDRQR-GLPESLIKSYLYQLLQGLAFCHSH-GILHRDLKPENLLIN 132

Query: 61  ST 62
           + 
Sbjct: 133 TE 134

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E +   L   +      GL    ++++ + +L G+D+LH    I+H DLKP+NIL+ 
Sbjct: 83  LVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHR-IVHRDLKPQNILVT 141

Query: 61  ST 62
           S 
Sbjct: 142 SD 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+E++ G SL  L+K    KG L  ++   I   IL+ L+YLH   GIIH D+KPENIL
Sbjct: 75  LVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH-SKGIIHRDIKPENIL 133

Query: 59  L 59
           L
Sbjct: 134 L 134

Length = 384

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 125 KPERCLDGIDMRCKVVDFG-----------NACRANKQFAEEIQTRQYRAPEVILRAGYS 173
           KP+  L   +   K+ DFG           N     K+    + T  Y APEVIL  G+S
Sbjct: 120 KPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHS 179

Query: 174 FSVDMWSFACTAFELATG 191
            +VD WS  C  +E   G
Sbjct: 180 KTVDWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L        + DF  A     +        T  Y APEV+ R GYS +VD WS  
Sbjct: 127 KPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLG 186

Query: 183 CTAFELATG 191
            TA+E   G
Sbjct: 187 VTAYECLRG 195

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VLE+  G  L   +  S+       + R     I+  L+YLH  LGII+ DLKPENILL
Sbjct: 70  LVLEYAPGGELFSHL--SKEGRFSEERARFYAAEIVLALEYLHS-LGIIYRDLKPENILL 126

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           ++E+  G S L L+K  +   L+   +  I + +L GL+YLH E G IH D+K  NILL 
Sbjct: 77  IMEYCGGGSCLDLLKPGK---LDETYIAFILREVLLGLEYLHEE-GKIHRDIKAANILLS 132

Query: 61  ST 62
             
Sbjct: 133 EE 134

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 10/63 (15%)

Query: 1   MVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V+E+L  GD  SLL  +       L+ +  R     I+  L+YLH   GIIH DLKP+N
Sbjct: 70  LVMEYLPGGDLASLLENVGS-----LDEDVARIYIAEIVLALEYLHS-NGIIHRDLKPDN 123

Query: 57  ILL 59
           IL+
Sbjct: 124 ILI 126

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 20/78 (25%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 174
           KPE  L  +D     K+ DFG        FA+ ++ R        +Y APE+IL  GY  
Sbjct: 128 KPENLL--LDSDGYIKITDFG--------FAKRVKGRTYTLCGTPEYLAPEIILSKGYGK 177

Query: 175 SVDMWSFACTAFELATGD 192
           +VD W+     +E+  G 
Sbjct: 178 AVDWWALGILIYEMLAGY 195

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V+E++   L  +++    + L   +V+   + +L G+ Y+H   GI+H DLKP N+L+ 
Sbjct: 76  LVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMH-ANGIMHRDLKPANLLIS 133

Query: 61  ST 62
           + 
Sbjct: 134 AD 135

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 1   MVLEFL-GDSLLRLIKYS-RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+ +L G SLL ++K S    GL+   +  + K +L GL+YLH   G IH D+K  NIL
Sbjct: 76  LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN-GQIHRDIKAGNIL 134

Query: 59  L 59
           L
Sbjct: 135 L 135

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 25/165 (15%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGD 192
           K+ DFG A RA     + +  E+ T  YRAPEV+L +  YS  VD+WS      E+AT  
Sbjct: 141 KLADFGLA-RAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKK 199

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 252
            LF      G  E  D L  +  ++G     +  G     DY               W  
Sbjct: 200 PLF-----HGDSEI-DQLFRIFRILGTPTEDVWPGVTSLPDY---------KNTFPKWKK 244

Query: 253 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             L        E    +  + L  +L + P KR +A++ L HP+ 
Sbjct: 245 GSLRSAVKNLDE----DGLDLLEKMLIYDPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 23/90 (25%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--------RANKQFAEEIQ---------------TRQY 161
           KPE  L   DM  K+ DFG A          +NK  A  I                T +Y
Sbjct: 129 KPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEY 188

Query: 162 RAPEVILRAGYSFSVDMWSFACTAFELATG 191
            +PE++       S D+W+  C  +++ TG
Sbjct: 189 VSPELLNEKPAGKSSDLWALGCIIYQMLTG 218

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 41/174 (23%), Positives = 61/174 (35%), Gaps = 61/174 (35%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVI-----LRAGYSFSVDMWSFAC 183
             K+VDFG     + Q    +  R        + APEVI       A Y    D+WS   
Sbjct: 151 EVKLVDFG----VSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGI 206

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
           TA ELA G     P      C+     AL      K+PR                     
Sbjct: 207 TAIELADGK---PP-----LCDMHPMRALF-----KIPRNPP----------------PT 237

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           ++  + WS                ++F +F+   L    E+RP  ++ L+HP++
Sbjct: 238 LKSPENWS----------------KKFNDFISECLIKNYEQRPFMEELLEHPFI 275

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 43/176 (24%), Positives = 58/176 (32%), Gaps = 46/176 (26%)

Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KP   L       K+ DFG          Q    + T  Y +PE I    YS++ D+WS 
Sbjct: 127 KPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSL 186

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
             T  E A G   F P     F E       +M+ I                        
Sbjct: 187 GLTLLECALGKFPFLPPGQPSFFE-------LMQAI-----------CDGPPPSLPAE-- 226

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                               FS     EF +F+   L   P+KRP+A + LQHP++
Sbjct: 227 -------------------EFSP----EFRDFISACLQKDPKKRPSAAELLQHPFI 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 26/101 (25%)

Query: 137 CKVVDFGNACR-----------------ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDM 178
           CK+ DFG A R                   ++   ++ T  YRAPE+++ A  Y F+VDM
Sbjct: 158 CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDM 217

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIG 218
           WS  C   EL TG  LF         E+E D L  + EL+G
Sbjct: 218 WSVGCIFAELLTGKPLFPG-------ENEIDQLGRIFELLG 251

Length = 335

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 30/168 (17%)

Query: 141 DFGNAC-----RANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-D 192
           DFG AC      ANK +  A  I T    APE++ R  Y  +VD+WS     FE+AT  D
Sbjct: 225 DFGAACFPVDINANKYYGWAGTIATN---APELLARDPYGPAVDIWSAGIVLFEMATCHD 281

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR----LK 248
            LF      G C+ +  + L++   G  P +  I  AQ+       G  K+  R      
Sbjct: 282 SLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPI-DAQANLDEIYIGLAKKSSRKPGSRP 340

Query: 249 FWS-LDRLLVDKYRFSETDAREFAEFLV-PLLDFTPEKRPTAQQCLQH 294
            W+ L  L +D             E+L+  +L F    RP+A+  L  
Sbjct: 341 LWTNLYELPID------------LEYLICKMLAFDAHHRPSAEALLDF 376

Length = 391

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 24/178 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L       K+ DFG A RA     K ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 130 KPQNLLINEKGELKLADFGLA-RAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMW 188

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C  +E+ATG  +F P S       ++ L L+  L+G  P +    G  S + F  + 
Sbjct: 189 GVGCILYEMATGRPMF-PGSTV-----KEELHLIFRLLG-TPTEETWPGITSNEEFRSYL 241

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +   +       RL        +TD     + L  LL +  + R +A+  L+H + 
Sbjct: 242 FPQYRAQPLINHAPRL--------DTDG---IDLLSSLLLYETKSRISAEAALRHSYF 288

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 7   GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
           G +L  L+++ R   L+ + +R     +L GL YLH   GI+H D+KP NI L  
Sbjct: 83  GGTLEELLEHGRI--LDEHVIRVYTLQLLEGLAYLH-SHGIVHRDIKPANIFLDH 134

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 2   VLEF-LGDSLLRLIKYSRYKGLELNKVREICKY---ILTGLDYLHRELGIIHTDLKPENI 57
           +LE+    SL ++IK  ++     +    +  Y   +L GL YLH + G+IH D+K  NI
Sbjct: 77  ILEYAENGSLRQIIK--KFGPFPES---LVAVYVYQVLQGLAYLHEQ-GVIHRDIKAANI 130

Query: 58  LL 59
           L 
Sbjct: 131 LT 132

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 53/185 (28%), Positives = 74/185 (40%), Gaps = 40/185 (21%)

Query: 125 KPERCLDGIDMR---CKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSV 176
           KP+  L  ID R    K+ DFG A RA     + F  E+ T  YRAPE++L +  YS  V
Sbjct: 129 KPQNLL--IDRRTNALKLADFGLA-RAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPV 185

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WS  C   E+     LF   S      + D L  +  ++G    +   G     DY  
Sbjct: 186 DIWSVGCIFAEMVNQKPLFPGDS------EIDELFKIFRILGTPNEETWPGVTSLPDYKS 239

Query: 237 -----RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
                   DL  +      +L+   VD               L  +L   P KR TA+  
Sbjct: 240 AFPKWPPKDLATV----VPTLEPAGVD--------------LLSKMLRLDPSKRITARAA 281

Query: 292 LQHPW 296
           L+H +
Sbjct: 282 LEHEY 286

Length = 294

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 125 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 184

Query: 182 ACTAFELATGDMLFAPK 198
               FE+ TG + F  K
Sbjct: 185 GVLMFEMLTGSLPFQGK 201

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 137 CKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATG 191
            K+ DFG + R    N        T QY APEVI +   GY    D+WS  CT  E+ATG
Sbjct: 148 VKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E +  +L  LIK  +   L   +V+     +L  LD++HR  GI H D+KPENIL+
Sbjct: 77  LVFELMDMNLYELIKGRKRP-LPEKRVKSYMYQLLKSLDHMHRN-GIFHRDIKPENILI 133

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L       ++ D G A   +  K+      T  Y APEV+    Y FSVD ++  
Sbjct: 122 KPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALG 181

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMME 215
           CT +E+  G   F  +  +   E+     L M 
Sbjct: 182 CTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMA 214

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 1   MVLEFLGDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF+  ++L  L KY    GL+ ++VR+    IL G+++ H    IIH D+KPENIL+
Sbjct: 77  LVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSH-NIIHRDIKPENILV 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 21/179 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L       K+ DFG A RA    +  ++ E+ T  YR P+V+L +  YS  +DMW
Sbjct: 130 KPQNLLISDTGELKLADFGLA-RAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMW 188

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C   E+  G   F      G  + +D L  +  ++G  P +    G  S  +F    
Sbjct: 189 GVGCIFVEMIQGVAAFP-----GMKDIQDQLERIFLVLG-TPNEDTWPGVHSLPHF---- 238

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
              +  R   +S   L     + S  +  E  +    LL   P+ R +AQ  L H + S
Sbjct: 239 ---KPERFTLYSPKNLRQAWNKLSYVNHAE--DLASKLLQCFPKNRLSAQAALSHEYFS 292

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 138 KVVDFGNACR-----ANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 188
           K++DFG A R      +   +  ++    T  + APEVI  +GY    D+WS  CT FE+
Sbjct: 142 KLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201

Query: 189 ATG 191
           ATG
Sbjct: 202 ATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 25/175 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 137 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 196

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      D D L  ++++IG +P          +D+        
Sbjct: 197 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIG-LP--------GEEDWPRDVA--- 238

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 296
            + R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 239 -LPRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV E++   L  L+     K    ++++   K +L GL YLH   GI+H D+K  NIL+
Sbjct: 77  MVFEYMDHDLTGLLDSPEVK-FTESQIKCYMKQLLEGLQYLHSN-GILHRDIKGSNILI 133

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 47/181 (25%), Positives = 65/181 (35%), Gaps = 47/181 (25%)

Query: 138 KVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 196
           K+ DFG +    N        T  Y APE I    YS + D+WS   T  E+A     F 
Sbjct: 145 KLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFP 204

Query: 197 PKSGQGFCEDEDHLAL--MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
           P       E E  L    ++  I  MP        + KD      +         WS   
Sbjct: 205 P-------EGEPPLGPIELLSYIVNMPN------PELKD------EPGNGI---KWS--- 239

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE 314
                         EF +F+   L+  P +RPT    L+HPW+      + + K K N+ 
Sbjct: 240 -------------EEFKDFIKQCLEKDPTRRPTPWDMLEHPWI------KAQMKKKVNMA 280

Query: 315 K 315
           K
Sbjct: 281 K 281

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 48/159 (30%)

Query: 138 KVVDFGNACRANKQFAE-EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA 196
           K+ D G +    K  A+ +I T  Y APEV     YS+  D+WS  C  +E+AT    F 
Sbjct: 143 KIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE 202

Query: 197 PKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 256
            +S             M +L  K+ R            +                     
Sbjct: 203 ARS-------------MQDLRYKVQR----------GKYP-------------------- 219

Query: 257 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                     +++   F+  +L   P+ RP   + L  P
Sbjct: 220 ----PIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASP 254

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 21  GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
           GL    ++++ +  L GLD+LH    I+H DLKPENIL+ S
Sbjct: 104 GLPAETIKDLMRQFLRGLDFLHANC-IVHRDLKPENILVTS 143

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILLVS 61
           +L GL YLH +  IIH D+KP NIL+ S
Sbjct: 109 VLKGLTYLHEKHKIIHRDVKPSNILVNS 136

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 37/172 (21%)

Query: 138 KVVDFGNACRANKQ----FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGD 192
           K+ DFG A   N +    +  ++ T  YR PE++L    Y  ++D+WS  C   EL T  
Sbjct: 156 KLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKK 215

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 252
            +F     Q   E        +ELI +      + G+     +        + +L +++ 
Sbjct: 216 PIF-----QANQE-----LAQLELISR------LCGSPCPAVW------PDVIKLPYFNT 253

Query: 253 -------DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                   R L +++ F  T A    + L  +L   P KR TA++ L  PWL
Sbjct: 254 MKPKKQYRRRLREEFSFIPTPA---LDLLDHMLTLDPSKRCTAEEALNSPWL 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +++EF     L  I     +GL   ++R +C+ +L  L++LH    +IH DLK  NILL
Sbjct: 79  ILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHK-VIHRDLKAGNILL 136

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L      C++ D G A   +  K   +   T  Y APE++    YS+ VD ++  
Sbjct: 122 KPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMG 181

Query: 183 CTAFELATGDMLF 195
           C+ +E+  G   F
Sbjct: 182 CSIYEMVAGRTPF 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       K+ DFG +          + +  Y APEV+   GY F+VD WS  C 
Sbjct: 128 KPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCM 187

Query: 185 AFELATGDMLFAPKSG 200
            +E   G   F P SG
Sbjct: 188 LYEFLCG---FPPFSG 200

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 56/213 (26%), Positives = 82/213 (38%), Gaps = 40/213 (18%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +++EFL  GD +  LIKY  +     +  R      +  ++ +H+ LG IH D+KP+NIL
Sbjct: 78  LIMEFLPGGDLMTMLIKYDTFSE---DVTRFYMAECVLAIEAVHK-LGFIHRDIKPDNIL 133

Query: 59  LVSTIDPSKDPIRS--GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRA 116
               ID       S  GL+    +   S            + ++  R   AV +I++  +
Sbjct: 134 ----IDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMS 189

Query: 117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSV 176
           S   I   K  R L    M    V                 T  Y APE+ L+ GY    
Sbjct: 190 SKDQIATWKKNRRL----MAYSTVG----------------TPDYIAPEIFLQQGYGQEC 229

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDH 209
           D WS     FE   G   + P     FC +  H
Sbjct: 230 DWWSLGAIMFECLIG---WPP-----FCSENSH 254

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKG---LELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           ++ ++    L ++IK+ R      +  + V+ +   IL G+ YLH    ++H DLKP NI
Sbjct: 81  LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNW-VLHRDLKPANI 139

Query: 58  LLVS 61
           L++ 
Sbjct: 140 LVMG 143

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVRE-----ICKYILTGLDYLHRELGIIHTDLKP 54
           +V+E   G S+  L+K  R KG    +++E     I +  L GL YLH    +IH D+K 
Sbjct: 86  LVMELCGGGSVTDLVKGLRKKG---KRLKEEWIAYILRETLRGLAYLHENK-VIHRDIKG 141

Query: 55  ENILL 59
           +NILL
Sbjct: 142 QNILL 146

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EFL G +L  ++ ++R   +   ++  +C  +L  L +LH + G+IH D+K ++ILL
Sbjct: 93  VVMEFLEGGALTDIVTHTR---MNEEQIATVCLAVLKALSFLHAQ-GVIHRDIKSDSILL 148

Query: 60  VS 61
            S
Sbjct: 149 TS 150

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+     A  ++T     +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM ++  K PR ++      + G   KD   R G    
Sbjct: 190 CGRLPFYNQDHEKLFE----LILMEDI--KFPRTLSADAKSLLSGLLIKDPNKRLGGGPD 243

Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKR 285
           D K I R  F++        D+ LV  ++    SETD R F  EF    +  TP ++
Sbjct: 244 DAKEIMRHSFFTGVNWQDVYDKKLVPPFKPQVTSETDTRYFDEEFTAQTITITPPEK 300

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 7/62 (11%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVR--EICKYILTGLDYLHRELGIIHTDLKPENI 57
           +V+E++ G SL  +I       + +N+ +   +C+ +L GL+YLH    +IH D+K +NI
Sbjct: 92  VVMEYMDGGSLTDII---TQNFVRMNEPQIAYVCREVLQGLEYLHS-QNVIHRDIKSDNI 147

Query: 58  LL 59
           LL
Sbjct: 148 LL 149

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 130 LDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTA 185
           LD  D   K+ DFG  C+ N     + +    T  Y APE++    Y+FSVD WSF    
Sbjct: 129 LDR-DGHIKIADFG-MCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLL 186

Query: 186 FELATGDMLFAPKSGQGFCEDEDHLALMMEL-IGKMPRKIAIGGAQSKDYFDRHGDLKRI 244
           +E+  G    +P  G    +DED L   + +     PR I     +SKD  ++  +    
Sbjct: 187 YEMLIGQ---SPFHG----DDEDELFESIRVDTPHYPRWITK---ESKDILEKLFERDPT 236

Query: 245 RRL 247
           RRL
Sbjct: 237 RRL 239

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 46/180 (25%), Positives = 69/180 (38%), Gaps = 53/180 (29%)

Query: 133 IDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACT 184
           +D   K+ DFG + +  K        I T  + APEV++        Y +  D+WS   T
Sbjct: 145 LDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGIT 204

Query: 185 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 244
             E+A               E   H     EL    P ++ +  A+S        +   +
Sbjct: 205 LIEMAQ-------------IEPPHH-----EL---NPMRVLLKIAKS--------EPPTL 235

Query: 245 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR 304
            +   WS+                EF +FL   LD  PE RP+A Q L+HP++S   S R
Sbjct: 236 SQPSKWSM----------------EFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNR 279

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           +V   +G  L  ++K  +   L  + ++ +   IL GL Y+H   GIIH DLKP NI
Sbjct: 97  LVTHLMGADLNNIVKCQK---LSDDHIQFLVYQILRGLKYIH-SAGIIHRDLKPSNI 149

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 130 LDGIDMRCKVVDFGNA-CRANK-QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFE 187
           ++ +D  C + D G A        F     T +  APEV+ R  Y+   D+WS     FE
Sbjct: 190 INDVDQVC-IGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFE 248

Query: 188 -LATGDMLF--APKSGQGFCED-EDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK- 242
            LA    +F   P + + + +    HL  ++  +   P +           F R    + 
Sbjct: 249 MLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEE-----------FPRDPGSRL 297

Query: 243 RIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLV-PLLDFTPEKRPTAQQCLQHP 295
               +++ SL+R    +Y  F   +     EFLV  +L F    RP+A++ L +P
Sbjct: 298 VRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYP 352

Length = 357

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 130 LDGIDMRCKVVDFGNACRANKQF--AEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFA 182
           +D    R ++ DFG A R   +   A E Q     T  + APEV+    Y  S D+WS  
Sbjct: 136 IDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVG 195

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL 216
           C   E+AT       K      +  +HLAL+ ++
Sbjct: 196 CVIIEMATA------KPPWNAEKHSNHLALIFKI 223

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I+  L+YLH   GIIH D+KP+NILL
Sbjct: 109 IVLALEYLH-SKGIIHRDIKPDNILL 133

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 1   MVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V+E++  G+  S LR     +         R     ++  L+YLH  L I++ DLKPEN
Sbjct: 78  LVMEYVPGGELFSHLR-----KSGRFPEPVARFYAAQVVLALEYLHS-LDIVYRDLKPEN 131

Query: 57  ILLVST 62
           +LL S 
Sbjct: 132 LLLDSD 137

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 14/65 (21%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILT----GLDYLHRELGIIHTDLKP 54
           ++L+FL  GD   RL K       E+    E  K+ L      LD+LH  LGII+ DLKP
Sbjct: 75  LILDFLRGGDLFTRLSK-------EVMFTEEDVKFYLAELALALDHLHS-LGIIYRDLKP 126

Query: 55  ENILL 59
           ENILL
Sbjct: 127 ENILL 131

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNK--VREICKYILTGLDYLHRELGIIHTDLKPENI 57
           + +E+  G SL  + K  + +G  + +  + +I + +L GL YLH    IIH D+KP NI
Sbjct: 78  IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH-SRKIIHRDIKPSNI 136

Query: 58  LL 59
           LL
Sbjct: 137 LL 138

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 52/231 (22%), Positives = 78/231 (33%), Gaps = 53/231 (22%)

Query: 84  SINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELP-KPERCLDGIDMRCKVVDF 142
            +  G  +T  I E  L+R     V  +   +     I    KP   L   + + K+ DF
Sbjct: 88  KLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDF 147

Query: 143 GNACRANKQFAE-EIQTRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLF 195
           G +       A+  I  + Y APE I          Y+   D+WS   +  E+A G   +
Sbjct: 148 GVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPY 207

Query: 196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 255
            P       E   ++   +  I                     GD               
Sbjct: 208 PP-------ETYANIFAQLSAI-------------------VDGDPPT------------ 229

Query: 256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-SLRNSTRD 305
           L   Y     DA++F       L+  P +RPT  Q L+HPWL   +N+  D
Sbjct: 230 LPSGY---SDDAQDFVA---KCLNKIPNRRPTYAQLLEHPWLVKYKNADVD 274

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 48/168 (28%)

Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D R K+ DFG   + +K+       + T  + APE+I R  Y   VD+WS      E+  
Sbjct: 152 DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVD 211

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
           G+  +          +E  L  M  +   +P K+               +L ++      
Sbjct: 212 GEPPYF---------NEPPLKAMKMIRDNLPPKLK--------------NLHKVSPSLKG 248

Query: 251 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
            LDRLLV                        P +R TA + L+HP+L+
Sbjct: 249 FLDRLLVRD----------------------PAQRATAAELLKHPFLA 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 51/169 (30%)

Query: 130 LDGIDMRCKVVDFGNA--CRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAF 186
           LD  +   K+ DFG A     +  FA+  + T  Y +PE +    Y    D+WS  C  +
Sbjct: 143 LDA-NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIY 201

Query: 187 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 246
           EL      F  ++          L L          KI  G               + RR
Sbjct: 202 ELCALSPPFTARN---------QLQLA--------SKIKEG---------------KFRR 229

Query: 247 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           +            YR+S     E  E +  +L+  P+KRP+ ++ LQ P
Sbjct: 230 I-----------PYRYSS----ELNEVIKSMLNVDPDKRPSTEELLQLP 263

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 43/164 (26%), Positives = 60/164 (36%), Gaps = 49/164 (29%)

Query: 138 KVVDFGNACRANKQFAEE---IQTRQYRAPEVI---LRAGYSFSVDMWSFACTAFELATG 191
           K+ DFG + +     A+    I T  + APEV     + GY    D+W+   TA ELA  
Sbjct: 141 KLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAEL 200

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
                P         + H    + LI K                          +LK   
Sbjct: 201 Q---PPMF-------DLHPMRALFLISKSNFPPP--------------------KLK--- 227

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                 DK ++S      F +F+   L   P+KRPTA + LQHP
Sbjct: 228 ------DKEKWSP----VFHDFIKKCLTKDPKKRPTATKLLQHP 261

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
            V E LG  L RL+       LE   ++     IL GL Y+H   G++H DLKP NIL+ 
Sbjct: 87  FVTELLGTDLHRLLTSRP---LEKQFIQYFLYQILRGLKYVH-SAGVVHRDLKPSNILIN 142

Query: 61  STID 64
              D
Sbjct: 143 ENCD 146

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 3   LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           LE + G SL +L    +Y       +R   + IL GL+YLH     +H D+K  NIL+
Sbjct: 81  LELVPGGSLAKL--LKKYGSFPEPVIRLYTRQILLGLEYLHDR-NTVHRDIKGANILV 135

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 30  ICKYILTGLDYLHRELGIIHTDLKPENILL 59
           I    L GL+YLH     IH D+K  NILL
Sbjct: 104 ILYQTLKGLEYLHS-NKKIHRDIKAGNILL 132

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 30  ICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +C+  L GL YLH E G IH D+K  NILL
Sbjct: 106 VCRETLKGLAYLH-ETGKIHRDIKGANILL 134

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 53/156 (33%)

Query: 134 DMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+ N     + +    T  Y APE++    Y+ SVD WSF    +E+ 
Sbjct: 132 DGHIKIADFG-MCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEML 190

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 249
            G    +P  G    EDED L                                      F
Sbjct: 191 IGQ---SPFHG----EDEDEL--------------------------------------F 205

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR 285
            S   +L D+  F    ++E  + L  L +  P KR
Sbjct: 206 DS---ILNDRPHFPRWISKEAKDCLSKLFERDPTKR 238

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 9/84 (10%)

Query: 138 KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDML 194
           K+ DFG+A    A ++    I +R YRAPE++L A  Y+  +D+WS  C   E+  G  +
Sbjct: 211 KLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPI 270

Query: 195 FAPKSGQGFCEDEDHLALMMELIG 218
           F   SGQ      D L  +++++G
Sbjct: 271 F---SGQ---SSVDQLVRIIQVLG 288

Length = 440

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 48/169 (28%)

Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D R K+ DFG   + +K+  +    + T  + APEVI R  Y   VD+WS      E+  
Sbjct: 154 DGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID 213

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
           G+  +          +E  L  M  +   +P ++               D  ++  +   
Sbjct: 214 GEPPYF---------NEPPLQAMRRIRDNLPPRVK--------------DSHKVSSVLRG 250

Query: 251 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
            LD +LV          RE            P +R TAQ+ LQHP+L L
Sbjct: 251 FLDLMLV----------RE------------PSQRATAQELLQHPFLKL 277

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 1   MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EF G  S+  LIK ++   L+   +  IC+ IL GL +LH+   +IH D+K +N+LL
Sbjct: 86  LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLL 144

Query: 60  VSTIDPSKDPIRSGLTPILERPEGSIN 86
             T +     +  G++  L+R  G  N
Sbjct: 145 --TENAEVKLVDFGVSAQLDRTVGRRN 169

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G  LL  ++ +R K L L+ +      I  G++YL      IH DL   N L+
Sbjct: 78  IVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLES-KNFIHRDLAARNCLV 136

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+E++  GD +  LI+            R     ++  LD +H+ LG IH D+KP+NIL
Sbjct: 78  LVMEYMPGGDLMNLLIRKDV---FPEETARFYIAELVLALDSVHK-LGFIHRDIKPDNIL 133

Query: 59  L 59
           +
Sbjct: 134 I 134

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 22/176 (12%)

Query: 136 RCKVVDFGNACRAN---KQFAE---EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFEL 188
           R K+ D G A   N   K  A+    + T  YRAPE++L A  Y+ ++D+W+  C   EL
Sbjct: 150 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL 209

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG-AQSKDYFD-----RHGDL- 241
            T + +F        C  ED          ++ R   + G    KD+ D      H  L 
Sbjct: 210 LTSEPIF-------HCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLM 262

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           K  RR  + +   +   +    + D++ F   L  LL   P KR T++Q +Q P+ 
Sbjct: 263 KDFRRNTYTNCSLIKYMEKHKVKPDSKAF-HLLQKLLTMDPIKRITSEQAMQDPYF 317

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +      + +  + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202

Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 32/177 (18%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM E+  + PR ++      + G   KD   R G    
Sbjct: 190 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPE 243

Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKR 285
           D K I   +F++       + + L   ++    SETD R F  EF    +  TP  R
Sbjct: 244 DAKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETDTRYFDEEFTAQSITITPPDR 300

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 32/174 (18%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+   +    ++T     +Y APEV+    Y  +VD W      +E+ 
Sbjct: 132 DGHIKITDFG-LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 190

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM E+  + PR ++      + G   KD   R G    
Sbjct: 191 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLSPEAKSLLSGLLKKDPKQRLGGGPD 244

Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTP 282
           D K I + KF++        ++ LV  ++    SETD R F  EF   ++  TP
Sbjct: 245 DAKEIMQHKFFAGIVWQDVYEKKLVPPFKPQVTSETDTRYFDEEFTAQMITITP 298

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 23/179 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L       K+ DFG A RA    ++ ++ E+ T  YR P+V+L A  YS ++D+W
Sbjct: 130 KPQNLLISYLGELKLADFGLA-RAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIW 188

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C   E+  G   F      G  +  + L  +  ++G        G ++  +Y     
Sbjct: 189 GAGCIFIEMLQGQPAFP-----GVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKP--- 240

Query: 240 DLKRIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                         + L   + R S     E  +    +L   P+ R +AQ  L HP+ 
Sbjct: 241 ------EWFLPCKPQQLRVVWKRLSRPPKAE--DLASQMLMMFPKDRISAQDALLHPYF 291

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 3/42 (7%)

Query: 23  ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID 64
           ++N ++ + + +LTGL  LHR +GI+H D+KPEN+L+  T+D
Sbjct: 307 DINVIKGVMRQVLTGLRKLHR-IGIVHRDIKPENLLV--TVD 345

Length = 507

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 3   LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           LE++ G S+   ++   Y   E   VR   + +L GL YLH + GI+H DLK +N+L+
Sbjct: 87  LEYVPGGSIGSCLR--TYGRFEEQLVRFFTEQVLEGLAYLHSK-GILHRDLKADNLLV 141

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 52/174 (29%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVI--LRAGYSFSVDMWSFA 182
            DGI   CK+ DFG + +++  +  +          + APEVI     GYS  VD+WS  
Sbjct: 143 ADGI---CKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLG 199

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G     P S      DE+ +A M +L                      G+ +
Sbjct: 200 CVVLEMFAGRR---PWS------DEEAIAAMFKL----------------------GNKR 228

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
               +       L           +    +FL       P+ RPTA++ LQHP+
Sbjct: 229 SAPPIPPDVSMNL-----------SPVALDFLNACFTINPDNRPTARELLQHPF 271

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 47/138 (34%)

Query: 158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           T  Y +PE+     Y++  D+WS  C  +EL T    F  ++             ++EL 
Sbjct: 166 TPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-------------LLELA 212

Query: 218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 277
                KI              G    I                ++S     E    +  L
Sbjct: 213 ----LKI------------LKGQYPPIPS--------------QYS----SELRNLVSSL 238

Query: 278 LDFTPEKRPTAQQCLQHP 295
           L   PE+RP+  Q LQ P
Sbjct: 239 LQKDPEERPSIAQILQSP 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 19  YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           Y   E   VR   + IL GL+YLH   GIIH D+K  NIL+
Sbjct: 100 YGAFEETLVRNFVRQILKGLNYLHNR-GIIHRDIKGANILV 139

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF    L  L+     K   L++++++ K +L GL Y+HR   I+H D+K  NIL+
Sbjct: 96  LVFEFCEHDLAGLLSNKNVK-FTLSEIKKVMKMLLNGLYYIHRN-KILHRDMKAANILI 152

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 4/57 (7%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           +V+ F+G  L +L+K+ +   L  ++++ +   +L GL Y+H   GIIH DLKP N+
Sbjct: 97  LVMPFMGTDLGKLMKHEK---LSEDRIQFLVYQMLKGLKYIHAA-GIIHRDLKPGNL 149

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKY---ILTGLDYLHRELGIIHTDLKPENI 57
           V+E+  G  L + IK  + K  +     +I  +   +   L YLH    I+H D+KP+NI
Sbjct: 77  VMEYADGGDLSQKIK-KQKKEGKPFPEEQILDWFVQLCLALKYLHSR-KILHRDIKPQNI 134

Query: 58  LLVST 62
            L S 
Sbjct: 135 FLTSN 139

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 50/163 (30%)

Query: 138 KVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           K+ DFG A +  + Q      + T  + APEVI ++ Y    D+WS   TA ELA G+  
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE-- 198

Query: 195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR 254
             P S       + H   ++ LI K       G                           
Sbjct: 199 -PPNS-------DMHPMRVLFLIPKNNPPTLTG--------------------------- 223

Query: 255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                  FS    + F EF+   L+  P  RPTA++ L+H ++
Sbjct: 224 ------EFS----KPFKEFIDACLNKDPSFRPTAKELLKHKFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 24/177 (13%)

Query: 136 RCKVVDFGNACRAN---KQFAE---EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFEL 188
           R K+ D G A   N   K  A+    + T  YRAPE++L A  Y+ ++D+W+  C   EL
Sbjct: 150 RVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAEL 209

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG-AQSKDYFD-----RHGDLK 242
            T + +F        C  ED          ++ R  ++ G    KD+ D      +  L+
Sbjct: 210 LTSEPIF-------HCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQ 262

Query: 243 RIRRLKFWSLDRLL--VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           +  R   ++   L+  ++K++  + D++ F   L  LL   P KR T++Q LQ P+ 
Sbjct: 263 KDFRRTTYANSSLIKYMEKHKV-KPDSKVFL-LLQKLLTMDPTKRITSEQALQDPYF 317

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 125 KPERCLDGIDMR--CKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L  ID     K+ DFG       NK+F   + T  Y APE IL  G     D WS
Sbjct: 124 KPENLL--IDQTGHLKLTDFGLSRNGLENKKF---VGTPDYLAPETILGVGDDKMSDWWS 178

Query: 181 FACTAFELATG 191
             C  FE   G
Sbjct: 179 LGCVIFEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 56
           +V E +   L ++IK        L    +  +Y    IL GL YLH    +IH DLKP N
Sbjct: 81  IVTELMETDLHKVIK----SPQPLT--DDHIQYFLYQILRGLKYLHSA-NVIHRDLKPSN 133

Query: 57  ILL 59
           IL+
Sbjct: 134 ILV 136

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF+   L ++IK  +   L    ++      L GL+YLH    I+H DLKP N+L+
Sbjct: 79  LVFEFMETDLEKVIK-DKSIVLTPADIKSYMLMTLRGLEYLHS-NWILHRDLKPNNLLI 135

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 1   MVLEFLGDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E+   ++L  L K  R  G+  + +++I    L  +++ H+    IH D+KPENIL+
Sbjct: 77  LVFEYCDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHKH-NCIHRDVKPENILI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 10/65 (15%)

Query: 1   MVLEFL--GD--SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V+E+L  GD  SLL +  Y      E   V+ I +  L  LDYLHR  GIIH DLKP+N
Sbjct: 81  LVMEYLIGGDVKSLLHIYGYFD----EEMAVKYISEVAL-ALDYLHRH-GIIHRDLKPDN 134

Query: 57  ILLVS 61
           +L+ +
Sbjct: 135 MLISN 139

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
            +  L+YL  EL IIH D+KP NILL
Sbjct: 116 TVKALNYLKEELKIIHRDVKPSNILL 141

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 17  SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +R + L L +V  + + +L+ +DY+H E GIIH D+K EN+L+
Sbjct: 252 ARLRPLGLAQVTAVARQLLSAIDYIHGE-GIIHRDIKTENVLV 293

Length = 461

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+L G     LIK     GL  +  ++    ++ G++ LH+  GIIH D+KPEN+L+
Sbjct: 74  LVMEYLNGGDCASLIK--TLGGLPEDWAKQYIAEVVLGVEDLHQR-GIIHRDIKPENLLI 130

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 1   MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           M +EF+   SL R+  Y +   + +  + +I   ++ GL YL+    I+H D+KP NIL+
Sbjct: 80  MCMEFMDCGSLDRI--YKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILV 137

Query: 60  VS 61
            S
Sbjct: 138 NS 139

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 45/142 (31%)

Query: 158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL--MME 215
           T  Y APE I    YS   D+WS   +  ELATG   + P       E++    +  +++
Sbjct: 162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPP-------ENDPPDGIFELLQ 214

Query: 216 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLV 275
            I   P                                RL   K  FS     +F +F+ 
Sbjct: 215 YIVNEPPP------------------------------RLPSGK--FSP----DFQDFVN 238

Query: 276 PLLDFTPEKRPTAQQCLQHPWL 297
             L   P +RP+ ++ L+HP++
Sbjct: 239 LCLIKDPRERPSYKELLEHPFI 260

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 1   MVLEFLGDSLLRLIK-YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E++   L + +  +     L+ N V+     +L G+ + H E  ++H DLKP+N+L+
Sbjct: 75  LVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH-ENRVLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYK---GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           +V E+L   L + +  +       L    ++     +L G+ + H+  G++H DLKP+N+
Sbjct: 83  LVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHK-HGVMHRDLKPQNL 141

Query: 58  LL 59
           L+
Sbjct: 142 LV 143

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 1   MVLEF-----LGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPE 55
           M++E+     L   L     +  Y        R     ++   +YLH   GII+ DLKPE
Sbjct: 70  MLMEYCLGGELWTILRDRGLFDEYTA------RFYIACVVLAFEYLHN-RGIIYRDLKPE 122

Query: 56  NILL 59
           N+LL
Sbjct: 123 NLLL 126

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 59/181 (32%)

Query: 138 KVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELA 189
           K+ DFG + +      +    I T  + APEV+         Y +  D+WS   T  ELA
Sbjct: 143 KLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELA 202

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 249
                          E   H    M ++ K+ +                 +   + +   
Sbjct: 203 QM-------------EPPHHELNPMRVLLKILK----------------SEPPTLDQPSK 233

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN 309
           WS                  F +FL   L   P+ RPTA + L+HP++S      D++ N
Sbjct: 234 WS----------------SSFNDFLKSCLVKDPDDRPTAAELLKHPFVS------DQSDN 271

Query: 310 K 310
           K
Sbjct: 272 K 272

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EFL G +L  ++ ++R   +   ++  +C  +L  L YLH + G+IH D+K ++ILL
Sbjct: 96  VVMEFLEGGALTDIVTHTR---MNEEQIATVCLSVLRALSYLHNQ-GVIHRDIKSDSILL 151

Query: 60  VS 61
            S
Sbjct: 152 TS 153

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 54/168 (32%)

Query: 138 KVVDFGNACRANKQFAEE---IQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELA 189
           K+VDFG + + ++        I T  + APEVI       A Y F  D+WS   TA E+A
Sbjct: 151 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMA 210

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 249
            G    AP      C+     AL +     +PR  A                 R++  K 
Sbjct: 211 EG----APP----LCDMHPMRALFL-----IPRNPA----------------PRLKSKK- 240

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           WS                ++F  F+   L     +RPT +Q ++HP++
Sbjct: 241 WS----------------KKFQSFIESCLVKNHSQRPTTEQLMKHPFI 272

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 138 KVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD 192
           K+ DFG A +  + Q      + T  + APEVI ++ Y F  D+WS   TA ELA G+
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 198

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 23/180 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KP   L       K+ DFG + +     A   + TR Y +PE +    Y+   D+WS   
Sbjct: 127 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGL 186

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
           +  E+A G     P        D   L  M                +S      H     
Sbjct: 187 SLVEMAIGRYPIPP-------PDAKELEAMFG-----RPVSEGEAKESHRPVSGHPPDSP 234

Query: 244 IRRLKFWSLDRLL------VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                F  LD ++      +    FS+    EF +F+   L   P++R   ++  +HP++
Sbjct: 235 RPMAIFELLDYIVNEPPPKLPSGAFSD----EFQDFVDKCLKKNPKERADLKELTKHPFI 290

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 67  KDPIRSGLTPILE-RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK 125
           +DP+   L+  +E  P GSI     S   + E   ++  ++ +  +S   ++M      K
Sbjct: 74  RDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIK 133

Query: 126 PERCLDGIDMRCKVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
               L       K+ DFG +      C +         T  + +PEVI   GY    D+W
Sbjct: 134 GANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIW 193

Query: 180 SFACTAFELAT 190
           S  CT  E+ T
Sbjct: 194 SVGCTVVEMLT 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 4/87 (4%)

Query: 1   MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EF G  S+  L+K ++   L+ + +  IC+ IL GL +LH    +IH D+K +N+LL
Sbjct: 96  LVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH-KVIHRDIKGQNVLL 154

Query: 60  VSTIDPSKDPIRSGLTPILERPEGSIN 86
             T +     +  G++  L+R  G  N
Sbjct: 155 --TENAEVKLVDFGVSAQLDRTVGRRN 179

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 16/75 (21%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSFSV 176
           KPE  L   +   K+ DFG        FA++++ R        +Y APEVI   G++ +V
Sbjct: 128 KPENILLDKEGHIKLTDFG--------FAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAV 179

Query: 177 DMWSFACTAFELATG 191
           D W+     +E+  G
Sbjct: 180 DWWALGILIYEMLVG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTA 185
           LD  +   K+ DFG  C+              T  Y APE++    Y  +VD W+     
Sbjct: 129 LDS-EGHIKIADFG-MCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLL 186

Query: 186 FELATGDMLFAPKSGQGFCEDEDHL 210
           +E+  G    +P  G    +DED L
Sbjct: 187 YEMLAGQ---SPFEG----DDEDEL 204

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-------IQTRQYRAPEVILRAGYSFSVD 177
           KP           K+ D G      + F+ +       + T  Y +PE I   GY+F  D
Sbjct: 133 KPANVFITATGVVKLGDLG----LGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSD 188

Query: 178 MWSFACTAFELA 189
           +WS  C  +E+A
Sbjct: 189 IWSLGCLLYEMA 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EFL   L + +  S   G+ L  ++     +L GL + H    ++H DLKP+N+L+
Sbjct: 76  LVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHR-VLHRDLKPQNLLI 133

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 143 GNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
           G+  +  ++F ++    T +Y APEVILR GY   VD W+     +E   G
Sbjct: 162 GHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVG 212

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 56/187 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT----RQYRAPEVILRAGYSFSVDMWS 180
           KPE  L        + DFG  C+ N +  ++  T     +Y APE++L  GY+ +VD W+
Sbjct: 120 KPENILLDYQGHIALCDFG-LCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWT 178

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                +E+ TG   F          DE+        + +M RKI                
Sbjct: 179 LGVLLYEMLTGLPPFY---------DEN--------VNEMYRKI---------------- 205

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWL 297
                          L +  RF +   R+  + L+ LL   P +R     AQ+   HP+ 
Sbjct: 206 ---------------LQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFF 250

Query: 298 SLRNSTR 304
           S  +  +
Sbjct: 251 SQLSWKK 257

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 23/67 (34%), Positives = 30/67 (44%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       KV DFG A +   +      T +Y APEVI   G+  +VD W+    
Sbjct: 145 KPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVL 204

Query: 185 AFELATG 191
            +E   G
Sbjct: 205 LYEFIAG 211

Length = 329

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 138 KVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           K+ DFG +      C +         T  + +PEVI   GY    D+WS  CT  E+ T
Sbjct: 144 KLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLT 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L  +D R K+ DFG   + +K   +    + T  + APEVI R  Y   VD+WS 
Sbjct: 144 KSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSL 203

Query: 182 ACTAFELATGD 192
                E+  G+
Sbjct: 204 GIMVIEMVDGE 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 18/80 (22%)

Query: 138 KVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           K+ DFG  C+ N       + F     T  Y APE+I    Y  SVD W+F    +E+  
Sbjct: 141 KIADFG-MCKENIFGGKTTRTFC---GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA 196

Query: 191 GDMLFAPKSGQGFCEDEDHL 210
           G     P  G    EDED L
Sbjct: 197 GQ---PPFDG----EDEDEL 209

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 67  KDPIRSGLTPILE-RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPK 125
           +DP    L+  +E  P GSI     +   + E   +R  ++ +  +S   ++M      K
Sbjct: 74  RDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIK 133

Query: 126 PERCLDGIDMRCKVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
               L       K+ DFG +      C +         T  + +PEVI   GY    D+W
Sbjct: 134 GANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVW 193

Query: 180 SFACTAFELAT 190
           S ACT  E+ T
Sbjct: 194 SVACTVVEMLT 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 31  CKY----ILTGLDYLHRELGIIHTDLKPENILLVSTID 64
            +Y    IL GL Y+H    ++H DLKP N+LL +  D
Sbjct: 108 IQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLNTNCD 144

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 2   VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           V++ +   L  +I +S  + L    +R     +L GL Y+H    +IH DLKP N+L+
Sbjct: 86  VMDLMESDLHHII-HSD-QPLTEEHIRYFLYQLLRGLKYIHSA-NVIHRDLKPSNLLV 140

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 14  IKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +KY  Y    +GLE+ +V      I  G+ +LH  + I++ D+KPEN+LL
Sbjct: 80  LKYHIYNVGERGLEMERVIHYSAQITCGILHLH-SMDIVYRDMKPENVLL 128

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 20  KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +GL   +++ IC+ +L  L YLH  + IIH DLK  N+LL
Sbjct: 105 RGLTEPQIQVICRQMLEALQYLH-SMKIIHRDLKAGNVLL 143

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I+  L+YLH +L +IH D+KP N+L+
Sbjct: 112 IVKALEYLHSKLSVIHRDVKPSNVLI 137

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 18/80 (22%)

Query: 138 KVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           K+ DFG  C+ N       K F     T  Y APE+I    Y  SVD W+F    +E+  
Sbjct: 141 KIADFG-MCKENMWDGVTTKTFC---GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA 196

Query: 191 GDMLFAPKSGQGFCEDEDHL 210
           G    AP  G    EDED L
Sbjct: 197 GQ---APFEG----EDEDEL 209

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 180
           KPE  L        + DFG +      NK       T +Y APEV+L   GY+  VD WS
Sbjct: 123 KPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWS 182

Query: 181 FACTAFELATG-DMLFAPKSGQ 201
                FE+  G    +A  + Q
Sbjct: 183 LGVLVFEMCCGWSPFYAEDTQQ 204

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 142 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 202 GIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 44/171 (25%), Positives = 65/171 (38%), Gaps = 56/171 (32%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAF 186
           D R K+ DFG  C    Q ++E+  R+       + APEVI R  Y   VD+WS      
Sbjct: 151 DGRVKLSDFG-FC---AQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVI 206

Query: 187 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 246
           E+  G+  +          +E  L  M  +   +P K+            ++      R 
Sbjct: 207 EMVDGEPPYF---------NEPPLQAMKRIRDNLPPKL------------KNLHKVSPRL 245

Query: 247 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             F  LDR+LV          R+            P +R TA + L HP+L
Sbjct: 246 RSF--LDRMLV----------RD------------PAQRATAAELLNHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 29  EICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
           +I   +L GL YL  +  I+H D+KP NIL+ S
Sbjct: 103 KISIAVLRGLTYLREKHKIMHRDVKPSNILVNS 135

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 17/77 (22%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----------TRQYRAPEVILRAGYSF 174
           KPE  L       K+ DFG  C+      E I           T +Y APE+++R+G+  
Sbjct: 127 KPENILLDAQGHVKLTDFG-LCK------ESIHEGTVTHTFCGTIEYMAPEILMRSGHGK 179

Query: 175 SVDMWSFACTAFELATG 191
           +VD WS     +++ TG
Sbjct: 180 AVDWWSLGALMYDMLTG 196

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G  LL  ++ +R K L L+ +      I  G++YL      IH DL   N L+
Sbjct: 78  IVMEYMEGGDLLSYLRKNRPK-LSLSDLLSFALQIARGMEYLES-KNFIHRDLAARNCLV 135

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 36/187 (19%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 131 DGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 189

Query: 190 TGDMLFAPKSGQGFCEDEDHL--ALMMELIGKMPRKIA------IGGAQSKDYFDRHG-- 239
            G + F       + +D + L   ++ME I + PR ++      + G   KD   R G  
Sbjct: 190 CGRLPF-------YNQDHERLFELILMEEI-RFPRTLSPEAKSLLAGLLKKDPKQRLGGG 241

Query: 240 --DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRP 286
             D K +   +F+        + + L+  ++    SE D R F  EF    +  TP  R 
Sbjct: 242 PSDAKEVMEHRFFLSINWQDVVQKKLLPPFKPQVTSEVDTRYFDDEFTAQSITITPPDRY 301

Query: 287 TAQQCLQ 293
            +   L+
Sbjct: 302 DSLGLLE 308

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 7   GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           GD L  L+K      L   +V++I + ++  L+ LH+   IIH D+K EN+L
Sbjct: 94  GD-LFDLLKKEGK--LSEAEVKKIIRQLVEALNDLHKHN-IIHNDIKLENVL 141

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.98
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.98
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.98
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.98
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.98
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.98
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.98
KOG0610	459	consensus Putative serine/threonine protein kinase	99.98
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.98
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.98
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.97
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.97
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.97
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.97
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.97
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.97
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.97
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.97
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.97
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.97
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.97
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.97
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.97
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.97
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.97
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.97
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.97
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.97
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.97
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.97
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.97
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.97
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.97
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.97
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.96
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.96
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.96
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.96
PLN00009	294	cyclin-dependent kinase A; Provisional	99.96
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.96
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.96
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.96
PHA02988	283	hypothetical protein; Provisional	99.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.96
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.96
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.96
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.96
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.96
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.96
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.96
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.96
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.96
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.96
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.96
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.96
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.96
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.96
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.96
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.96
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.96
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.96
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.96
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.96
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.96
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.96
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.96
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.96
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.96
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.96
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.96
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.96
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.95
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.95
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.95
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.95
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.95
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.95
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.95
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.95
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.95
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.95
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.95
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.95
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.95
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.95
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.95
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.95
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.95
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.95
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.95
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.95
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.95
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.95
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.95
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.95
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.95
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.95
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.95
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.95
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.95
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.95
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.95
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.95
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.95
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.95
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.94
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.94
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.94
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.94
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.94
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.94
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.94
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.94
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.94
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.94
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.94
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.94
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.94
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.94
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.94
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.94
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.94
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.94
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.94
KOG0586	596	consensus Serine/threonine protein kinase [General	99.94
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.94
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.94
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.94
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.94
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.94
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.94
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.94
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.94
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.94
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.94
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.94
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.94
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.94
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.94
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.94
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.94
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.94
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.94
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.94
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.94
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.94
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.94
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.94
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.94
KOG0584	632	consensus Serine/threonine protein kinase [General	99.94
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.94
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.94
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.93
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.93
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.93
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.93
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.93
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.93
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.93
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.93
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.93
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.93
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.93
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.93
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.93
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.93
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.93
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.93
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.93
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.93
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.93
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.93
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.93
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.93
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.93
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.93
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.93
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.93
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.93
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.93
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.92
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.92
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.92
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.92
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.92
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.92
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.92
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.92
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.92
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.91
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.91
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.91
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.91
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.91
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.9
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.89
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.87
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.87
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.87
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.87
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.85
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.84
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.83
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.82
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.82
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.81
KOG3653	534	consensus Transforming growth factor beta/activin	99.81
KOG1152	772	consensus Signal transduction serine/threonine kin	99.77
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.7
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.67
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.67
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.66
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.65
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.65
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.65
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.64
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.64
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.37
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.36
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.28
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.27
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.27
PRK12274	218	serine/threonine protein kinase; Provisional	99.25
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.25
PRK09188	365	serine/threonine protein kinase; Provisional	99.23
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.19
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.0
smart00090	237	RIO RIO-like kinase.	98.98
PRK10345	210	hypothetical protein; Provisional	98.91
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.82
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.8
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.78
PRK14879	211	serine/threonine protein kinase; Provisional	98.78
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.74
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.7
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.67
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.64
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.62
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.56
COG4248	637	Uncharacterized protein with protein kinase and he	98.39
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.39
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.27
KOG3087	229	consensus Serine/threonine protein kinase [General	98.25
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.22
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.21
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.2
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.17
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.07
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.05
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.85
KOG1243	690	consensus Protein kinase [General function predict	97.66
PRK09902	216	hypothetical protein; Provisional	97.49
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.45
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.23
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.03
COG0478	304	RIO-like serine/threonine protein kinase fused to	96.6
COG0661	517	AarF Predicted unusual protein kinase [General fun	96.49
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.44
KOG1235	538	consensus Predicted unusual protein kinase [Genera	96.02
KOG2270	520	consensus Serine/threonine protein kinase involved	94.78
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	94.48
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	94.47
KOG1093	725	consensus Predicted protein kinase (contains TBC a	94.42
PRK05231	319	homoserine kinase; Provisional	91.92
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	91.91
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	91.69
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	91.05
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	91.04
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	90.48
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	89.74
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	89.12
KOG0576	829	consensus Mitogen-activated protein kinase kinase	88.97
KOG2268	465	consensus Serine/threonine protein kinase [Signal	88.0
PF01636	239	APH: Phosphotransferase enzyme family This family	87.42
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	86.99
PRK10271	188	thiK thiamine kinase; Provisional	86.7
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	86.67
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	86.33
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	86.32
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	85.59
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	85.37
COG2334	331	Putative homoserine kinase type II (protein kinase	84.61
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	84.04
PLN02236	344	choline kinase	83.49
PRK11768	325	serine/threonine protein kinase; Provisional	81.95

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-48  Score=354.18  Aligned_cols=326  Identities=53%  Similarity=0.897  Sum_probs=242.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecC-CCCCCCCCCCC-CCCcc
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST-IDPSKDPIRSG-LTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~-~~~~~~~~~~~-~~~~~   78 (329)
                      ||+|++|.+|..+|.+..++++++..++.||+|||.||.|||.+|||||.||||+|||+... .+....+.+.. ....+
T Consensus       163 MVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~e~~~~~~~~~a~e~~~~~  242 (590)
T KOG1290|consen  163 MVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCSTEIDPAKDAREAGEATTSL  242 (590)
T ss_pred             EEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeeccccchhhhhhhhccccccC
Confidence            69999999999999999999999999999999999999999999999999999999999654 23333332222 11111


Q ss_pred             c--CCCCCCCCC--------CC-chhHHH--HHHHHHHhhhhccc-----------------------hhhcccccCC--
Q 020248           79 E--RPEGSINGG--------ST-STMTIV--EKKLKRRAKRAVAN-----------------------ISIRRASMGG--  120 (329)
Q Consensus        79 ~--~~~~~~~~~--------~~-~~~~~~--~~~~~~~~~~~~~~-----------------------~~~~~~~~~~--  120 (329)
                      .  .+.+..+..        .. ......  +...+++.++....                       .....+....  
T Consensus       243 p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~~~~s~n~~~~~n~~~~~v~~~~~~  322 (590)
T KOG1290|consen  243 PKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEPNQESYNNEPRINGNESTVERSTLE  322 (590)
T ss_pred             CCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhcccccccccccccccccccCCCccccchhhcccc
Confidence            1  001111100        00 000000  11111111000000                       0000000000  


Q ss_pred             -----------------------------------------ccCCC-------------CCccCCCCCCceEEeecCccc
Q 020248          121 -----------------------------------------IELPK-------------PERCLDGIDMRCKVVDFGNAC  146 (329)
Q Consensus       121 -----------------------------------------~~~~~-------------~~~~~~~~~~~~~l~Dfg~a~  146 (329)
                                                               ...++             +.........+|||+|||.|+
T Consensus       323 ~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~~v~p~~~~~~~di~vKIaDlGNAC  402 (590)
T KOG1290|consen  323 EDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNPLVNPDIPLPECDIRVKIADLGNAC  402 (590)
T ss_pred             cccccccCCccccccCccccccccccccchhcccccccccccccCcCCccccccccccCCCCCCCccceeEEEeeccchh
Confidence                                                     00000             000112345679999999999


Q ss_pred             ccccccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh
Q 020248          147 RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  226 (329)
Q Consensus       147 ~~~~~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  226 (329)
                      .....++..+.|..|++||+++|..|+..+||||++|++|||+||-++|...++..+..+.+|++.|++++|.+|..+..
T Consensus       403 W~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~ia~  482 (590)
T KOG1290|consen  403 WVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRKIAL  482 (590)
T ss_pred             hhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ...+++.||+..|.++.+.++..|.+.+++..+|.++.++..+|.|||.-||+++|++|+||+++|+|||+....-+...
T Consensus       483 ~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~~~~~  562 (590)
T KOG1290|consen  483 GGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAGPPPS  562 (590)
T ss_pred             cCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCccccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999966543333


Q ss_pred             hhcCC----Cccccccccceeeee
Q 020248          307 TKNKS----NVEKVDVGMSKLEIK  326 (329)
Q Consensus       307 ~~~~~----~~~~~~~~~~~~~~~  326 (329)
                      .+...    --+.+...+..+.++
T Consensus       563 ~~~~~~~~~~~e~v~~~~~~~~~~  586 (590)
T KOG1290|consen  563 DSPQNEENNEEEDVEGWMNNSRIK  586 (590)
T ss_pred             cCCccccccccccccccccccccc
Confidence            22222    333444455554443

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.8e-43  Score=335.15  Aligned_cols=224  Identities=38%  Similarity=0.626  Sum_probs=188.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||+|.++.||.++++..+..+|+...++.++.||+.||.+||+ .||||+||||+|||+...                  
T Consensus       265 iVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~-l~IIHcDLKPENILL~~~------------------  325 (586)
T KOG0667|consen  265 IVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHE-LGIIHCDLKPENILLKDP------------------  325 (586)
T ss_pred             eeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCeeeccCChhheeeccC------------------
Confidence            6999999999999999999999999999999999999999998 599999999999999542                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....|||||||.|+.........+.+++
T Consensus       326 ----------------------------------------------------~r~~vKVIDFGSSc~~~q~vytYiQSRf  353 (586)
T KOG0667|consen  326 ----------------------------------------------------KRSRIKVIDFGSSCFESQRVYTYIQSRF  353 (586)
T ss_pred             ----------------------------------------------------CcCceeEEecccccccCCcceeeeeccc
Confidence                                                                2448999999999998887778889999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc-cC
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR-HG  239 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~  239 (329)
                      |+|||+++|.+|+.+.||||||||++||.+|.++|.+.      ++.++++.|++++|.+|..++..+.....+|+. .+
T Consensus       354 YRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~------ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~  427 (586)
T KOG0667|consen  354 YRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD------NEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKG  427 (586)
T ss_pred             cccchhhccCCCCCccceeehhhhHHhHhcCccccCCC------CHHHHHHHHHHHhCCCCHHHHHhccccceehhccCC
Confidence            99999999999999999999999999999999999998      689999999999999999999999999999998 44


Q ss_pred             chhhhcccccc------chhH-----HHhhhcC---------CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          240 DLKRIRRLKFW------SLDR-----LLVDKYR---------FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       240 ~~~~~~~~~~~------~~~~-----~~~~~~~---------~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      ...-+......      ...+     ......+         ........|.|||++||.|||.+|+|+.++|+||||+.
T Consensus       428 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~  507 (586)
T KOG0667|consen  428 FPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTG  507 (586)
T ss_pred             ceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccc
Confidence            33211111100      0000     0000011         22355678999999999999999999999999999995


Q ss_pred             CC
Q 020248          300 RN  301 (329)
Q Consensus       300 ~~  301 (329)
                      ..
T Consensus       508 ~~  509 (586)
T KOG0667|consen  508 TS  509 (586)
T ss_pred             cc
Confidence            43

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-42  Score=306.56  Aligned_cols=236  Identities=32%  Similarity=0.530  Sum_probs=182.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|+|.||.|+++++..+.+.+++++.++.+++||+.+++|||+ .+++|.||||+||||..... .+......       
T Consensus       168 ivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~-~kl~HTDLKPENILfvss~~-~~~~~~k~-------  238 (415)
T KOG0671|consen  168 IVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHD-LKLTHTDLKPENILFVSSEY-FKTYNPKK-------  238 (415)
T ss_pred             EEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHh-cceeecCCChheEEEeccce-EEEeccCC-------
Confidence            5899999999999999998999999999999999999999999 69999999999999954311 00000000       


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                 . -..........|+|+|||.|......+...+.|..
T Consensus       239 -------------------------------------------~-~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRH  274 (415)
T KOG0671|consen  239 -------------------------------------------K-VCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRH  274 (415)
T ss_pred             -------------------------------------------c-cceeccCCCcceEEEecCCcceeccCcceeeeccc
Confidence                                                       0 00000123568999999999877777778889999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC-
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG-  239 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~-  239 (329)
                      |+|||++++.+||.++||||+|||++||.+|..+|.+.      ++.+++++|.+++|++|..+..+.. ..+||.... 
T Consensus       275 YRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtH------en~EHLaMMerIlGp~P~~mi~r~~-~~Kyf~~~rl  347 (415)
T KOG0671|consen  275 YRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTH------ENLEHLAMMERILGPIPSRMIKKTR-KEKYFRRGRL  347 (415)
T ss_pred             cCCchheeccCcCCccCceeeeeEEEEeeccceecccC------CcHHHHHHHHHhhCCCcHHHhhhhh-hHhhhhcccc
Confidence            99999999999999999999999999999999999877      6899999999999999999987664 223333321 


Q ss_pred             ch---------hhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          240 DL---------KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       240 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ++         +...+ ....++.++    .-...+..++.|||++||.+||.+|+|+.|+|.||||+...
T Consensus       348 dw~e~~~~~~~k~v~~-~ckpl~~~~----~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  348 DWPEVSSKGKSKYVFE-PCKPLKKYM----LQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             cCccccccccchhhhc-CCccHHHHh----ccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence            00         00000 001122221    23345567899999999999999999999999999999764

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-40  Score=293.39  Aligned_cols=189  Identities=31%  Similarity=0.507  Sum_probs=156.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |+|||| |+||++++...  +.+++.....|+.+|+.||.|||...+||||||||+|+|+                    
T Consensus       155 I~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLv--------------------  212 (364)
T KOG0581|consen  155 ICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLV--------------------  212 (364)
T ss_pred             eehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeee--------------------
Confidence            589999 99999999987  4599999999999999999999964599999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-cccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-KQFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-~~~~~~~~~  158 (329)
                                                                          .....|||+|||.+.... .-..+.+||
T Consensus       213 ----------------------------------------------------NskGeVKicDFGVS~~lvnS~a~tfvGT  240 (364)
T KOG0581|consen  213 ----------------------------------------------------NSKGEVKICDFGVSGILVNSIANTFVGT  240 (364)
T ss_pred             ----------------------------------------------------ccCCCEEeccccccHHhhhhhccccccc
Confidence                                                                346789999999995544 455788999


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ..|||||.+.+..|+.++||||||++++|+++|++||.... .   +....+..+..+.-.+|+                
T Consensus       241 ~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~-~---~~~~~~~Ll~~Iv~~ppP----------------  300 (364)
T KOG0581|consen  241 SAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPN-P---PYLDIFELLCAIVDEPPP----------------  300 (364)
T ss_pred             ccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcC-C---CCCCHHHHHHHHhcCCCC----------------
Confidence            99999999999999999999999999999999999998651 1   233444444443332222                


Q ss_pred             CchhhhccccccchhHHHhhhcCCChh-hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                                            .++.. ++.+|.+|+..||+.||.+|+|+.|+++|||++.......
T Consensus       301 ----------------------~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~~~v  346 (364)
T KOG0581|consen  301 ----------------------RLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFEDPNV  346 (364)
T ss_pred             ----------------------CCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhcccccc
Confidence                                  12333 6889999999999999999999999999999998665443

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=288.32  Aligned_cols=217  Identities=31%  Similarity=0.509  Sum_probs=178.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|+|+|+.+|..+++..+.  |+...+..+++||+.||.|+|+ ++|+||||||+|++++.                   
T Consensus       103 iV~elMetDL~~iik~~~~--L~d~H~q~f~YQiLrgLKyiHS-AnViHRDLKPsNll~n~-------------------  160 (359)
T KOG0660|consen  103 LVFELMETDLHQIIKSQQD--LTDDHAQYFLYQILRGLKYIHS-ANVIHRDLKPSNLLLNA-------------------  160 (359)
T ss_pred             EehhHHhhHHHHHHHcCcc--ccHHHHHHHHHHHHHhcchhhc-ccccccccchhheeecc-------------------
Confidence            5899999999999998754  9999999999999999999999 69999999999999943                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----cccccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~~  155 (329)
                                                                           .+.+|++|||+|+...     ...+..
T Consensus       161 -----------------------------------------------------~c~lKI~DFGLAR~~~~~~~~~~mTeY  187 (359)
T KOG0660|consen  161 -----------------------------------------------------DCDLKICDFGLARYLDKFFEDGFMTEY  187 (359)
T ss_pred             -----------------------------------------------------CCCEEeccccceeeccccCcccchhcc
Confidence                                                                 5578999999997663     233666


Q ss_pred             CCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC--CCc
Q 020248          156 IQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA--QSK  232 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~--~~~  232 (329)
                      +.|..|+|||+++.. .|+...||||+|||++||++|+++|.+.      +...++..|.+++|.++++....-.  ...
T Consensus       188 VaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~------d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar  261 (359)
T KOG0660|consen  188 VATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGK------DYVHQLQLILELLGTPSEEDLQKIRSEKAR  261 (359)
T ss_pred             eeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCC------chHHHHHHHHHhcCCCCHHHHHHhccHHHH
Confidence            779999999999865 6999999999999999999999999998      7899999999999999887765332  222


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS  311 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~~  311 (329)
                      .|....+..      +...+..++.       .....+.||+.+||++||.+|+|++|+|+||||.....+.++..-+.
T Consensus       262 ~yi~slp~~------p~~~f~~~fp-------~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~dEP~~~~  327 (359)
T KOG0660|consen  262 PYIKSLPQI------PKQPFSSIFP-------NANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPEDEPVCQP  327 (359)
T ss_pred             HHHHhCCCC------CCCCHHHHcC-------CCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCccCCCCCC
Confidence            343333322      1222344432       33568899999999999999999999999999999887777764433

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-39  Score=293.20  Aligned_cols=216  Identities=34%  Similarity=0.518  Sum_probs=173.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||..||..+++.. .+.|++..++.|++||++||+|+|.+ |+.|||+||+|||+.                    
T Consensus        87 fVfE~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~-GfFHRDlKPENiLi~--------------------  144 (538)
T KOG0661|consen   87 FVFEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH-GFFHRDLKPENILIS--------------------  144 (538)
T ss_pred             eeHHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc-CcccccCChhheEec--------------------
Confidence            69999999999999987 57899999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~~  158 (329)
                                                                          ....+||+|||+|+...  .+.+..+-|
T Consensus       145 ----------------------------------------------------~~~~iKiaDFGLARev~SkpPYTeYVST  172 (538)
T KOG0661|consen  145 ----------------------------------------------------GNDVIKIADFGLAREVRSKPPYTEYVST  172 (538)
T ss_pred             ----------------------------------------------------ccceeEecccccccccccCCCcchhhhc
Confidence                                                                23479999999997766  366777889


Q ss_pred             CCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc-CCCCccccC
Q 020248          159 RQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-GAQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~-~~~~~~~~~  236 (329)
                      +-|+|||+++.. -|+.+.||||+|||++|+.+=+++|++.      ++.+++-.|.+++|.+-..-+.. .......--
T Consensus       173 RWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~------sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf  246 (538)
T KOG0661|consen  173 RWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGA------SEIDQIYKICEVLGTPDKDSWPEGYNLASAMNF  246 (538)
T ss_pred             ccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCC------cHHHHHHHHHHHhCCCccccchhHHHHHHHhcc
Confidence            999999999865 6899999999999999999999999998      69999999999999975433321 111110000


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~  309 (329)
                      ...      ......+..++      +. .+.++.+||.+||.|||.+||||.++|+||||............
T Consensus       247 ~~P------~~~~~~l~~L~------p~-~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~~~~~~a~~  306 (538)
T KOG0661|consen  247 RFP------QVKPSPLKDLL------PN-ASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGRASGSSARG  306 (538)
T ss_pred             CCC------cCCCCChHHhC------cc-cCHHHHHHHHHHhcCCCccCccHHHHhcCccccccccccccccC
Confidence            000      00111233332      23 57899999999999999999999999999999987766555554

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-39  Score=292.65  Aligned_cols=182  Identities=34%  Similarity=0.551  Sum_probs=148.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |+.|++++..++.  +.+...+.+++|++.|+.|||+ .||+||||||+|||+...                 
T Consensus       253 mVlE~v~GGeLfd~vv~nk~--l~ed~~K~~f~Qll~avkYLH~-~GI~HRDiKPeNILl~~~-----------------  312 (475)
T KOG0615|consen  253 MVLEYVEGGELFDKVVANKY--LREDLGKLLFKQLLTAVKYLHS-QGIIHRDIKPENILLSND-----------------  312 (475)
T ss_pred             EEEEEecCccHHHHHHhccc--cccchhHHHHHHHHHHHHHHHH-cCcccccCCcceEEeccC-----------------
Confidence            699999 9999999998854  8999999999999999999999 499999999999999543                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          .....+||+|||+|....  ....+.+|
T Consensus       313 ----------------------------------------------------~e~~llKItDFGlAK~~g~~sfm~TlCG  340 (475)
T KOG0615|consen  313 ----------------------------------------------------AEDCLLKITDFGLAKVSGEGSFMKTLCG  340 (475)
T ss_pred             ----------------------------------------------------CcceEEEecccchhhccccceehhhhcC
Confidence                                                                235689999999996663  45667899


Q ss_pred             CCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 TRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      |+.|.|||++.+..   +..++|+||+||++|.+++|++||......+.     .                         
T Consensus       341 TpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s-----l-------------------------  390 (475)
T KOG0615|consen  341 TPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS-----L-------------------------  390 (475)
T ss_pred             CccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc-----H-------------------------
Confidence            99999999998764   33588999999999999999999987631110     0                         


Q ss_pred             cCccCchhhhccccccchhHHHhhhcC----CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYR----FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                       .+.+..+.|.    .....+.+.++||..||..||+.|+|++|+|+||||+...
T Consensus       391 -----------------~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  391 -----------------KEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             -----------------HHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhccc
Confidence                             1111112221    1234578999999999999999999999999999999765

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.1e-37  Score=274.28  Aligned_cols=211  Identities=29%  Similarity=0.423  Sum_probs=173.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||..+|.+++.... ++|...+++.++.|++.|+.|||+. .|+|||||++|+|+.+                   
T Consensus       154 ~VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~-wilHRDLK~SNLLm~~-------------------  212 (419)
T KOG0663|consen  154 IVMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDN-WILHRDLKTSNLLLSH-------------------  212 (419)
T ss_pred             eeHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhc-eeEecccchhheeecc-------------------
Confidence            699999999999999876 6799999999999999999999995 9999999999999943                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                           ...+|++|||+|+.+..+   .+..+.
T Consensus       213 -----------------------------------------------------~G~lKiaDFGLAR~ygsp~k~~T~lVV  239 (419)
T KOG0663|consen  213 -----------------------------------------------------KGILKIADFGLAREYGSPLKPYTPLVV  239 (419)
T ss_pred             -----------------------------------------------------CCcEEecccchhhhhcCCcccCcceEE
Confidence                                                                 568999999999888865   666778


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |..|+|||++++.+ |+...|+||+|||+.||+++.++|.+.      ...+++..|..++|.+.+.+|........+- 
T Consensus       240 TLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~------sE~dQl~~If~llGtPte~iwpg~~~lp~~k-  312 (419)
T KOG0663|consen  240 TLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK------SEIDQLDKIFKLLGTPSEAIWPGYSELPAVK-  312 (419)
T ss_pred             EeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC------chHHHHHHHHHHhCCCccccCCCccccchhh-
Confidence            99999999999974 999999999999999999999999998      5899999999999999988876543332110 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                         + .......+..+.+.+..    .. .+....+|++.+|.+||.+|+||.|.|+|+||.+.-
T Consensus       313 ---~-~~f~~~pyn~lr~kF~~----~~-lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  313 ---K-MTFSEHPYNNLRKKFGA----LS-LSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETP  368 (419)
T ss_pred             ---c-cccCCCCchhhhhhccc----cc-cchhHHHHHHHHhccCccccccHHHhhcccccccCC
Confidence               0 00011112223333211    11 467889999999999999999999999999999843

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.9e-38  Score=278.85  Aligned_cols=212  Identities=29%  Similarity=0.501  Sum_probs=172.3

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ||||||.-+|.++++..  .+..++.-.++.+++||+.||+|||+ .|||||||||.|+|++..                
T Consensus        99 lVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~-~~IcHRDIKPqNlLvD~~----------------  161 (364)
T KOG0658|consen   99 LVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHS-HGICHRDIKPQNLLVDPD----------------  161 (364)
T ss_pred             HHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHh-cCcccCCCChheEEEcCC----------------
Confidence            68999999999999964  23558999999999999999999999 599999999999999442                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                             ...+||+|||.|....  ++..+..
T Consensus       162 -------------------------------------------------------tg~LKicDFGSAK~L~~~epniSYi  186 (364)
T KOG0658|consen  162 -------------------------------------------------------TGVLKICDFGSAKVLVKGEPNISYI  186 (364)
T ss_pred             -------------------------------------------------------CCeEEeccCCcceeeccCCCceeEE
Confidence                                                                   4689999999996654  3445556


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .+++|+|||.++|. .|+.+.||||.||+++||+.|+++|.+.      ...+++.+|++++|.+..+-++..+....-+
T Consensus       187 cSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~------s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~  260 (364)
T KOG0658|consen  187 CSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGD------SSVDQLVEIIKVLGTPTREDIKSMNPNYTEF  260 (364)
T ss_pred             EeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCC------CHHHHHHHHHHHhCCCCHHHHhhcCcccccc
Confidence            79999999999997 5999999999999999999999999987      5788999999999999988877665442110


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                          ++......   ...++      +....+.+..+|+.++|+++|.+|.|+.|+++||||.....+
T Consensus       261 ----~~p~ik~~---~~~~~------~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  261 ----KFPQIKAH---PWHKV------FFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             ----cCcccccc---cceee------cccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence                11111100   01111      234457889999999999999999999999999999988766

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=1.7e-37  Score=270.11  Aligned_cols=210  Identities=26%  Similarity=0.438  Sum_probs=166.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||..++.+-+.... .+++...++.+++|++.|+.|||++ ++|||||||+||++                     
T Consensus        78 LVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~-n~IHRDIKPENILi---------------------  134 (396)
T KOG0593|consen   78 LVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHKN-NCIHRDIKPENILI---------------------  134 (396)
T ss_pred             EEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhhc-CeecccCChhheEE---------------------
Confidence            699999888888888776 4689999999999999999999995 99999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                         .....+||||||+|+....   ..+..+.
T Consensus       135 ---------------------------------------------------t~~gvvKLCDFGFAR~L~~pgd~YTDYVA  163 (396)
T KOG0593|consen  135 ---------------------------------------------------TQNGVVKLCDFGFARTLSAPGDNYTDYVA  163 (396)
T ss_pred             ---------------------------------------------------ecCCcEEeccchhhHhhcCCcchhhhhhh
Confidence                                                               3356899999999976552   3455577


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||.+.| ..|+.++||||+||++.||++|.++|++.      .+.+++-.|...+|.+++.-..-+...     
T Consensus       164 TRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~------SDiDQLy~I~ktLG~L~prhq~iF~~N-----  232 (396)
T KOG0593|consen  164 TRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR------SDIDQLYLIRKTLGNLIPRHQSIFSSN-----  232 (396)
T ss_pred             hhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc------chHHHHHHHHHHHcccCHHHHHHhccC-----
Confidence            899999999998 58999999999999999999999999998      489999999999999887665433222     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                        +-+...+.+...+. +-+.+++  + ..+..+.|||+.||+.||.+|+|-+++|.||||.+..
T Consensus       233 --~~F~Gv~lP~~~~~-epLe~k~--p-~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~  291 (396)
T KOG0593|consen  233 --PFFHGVRLPEPEHP-EPLERKY--P-KISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFI  291 (396)
T ss_pred             --CceeeeecCCCCCc-cchhhhc--c-cchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHH
Confidence              21111111111111 1112222  1 2234789999999999999999999999999997654

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=287.83  Aligned_cols=182  Identities=31%  Similarity=0.482  Sum_probs=161.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|+||+ +|.|.+++.+.  +.|++..+++++.+|+.||+|||+ +|||||||||+|||+                    
T Consensus       151 FvLe~A~nGdll~~i~K~--Gsfde~caR~YAAeIldAleylH~-~GIIHRDlKPENILL--------------------  207 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKY--GSFDETCARFYAAEILDALEYLHS-NGIIHRDLKPENILL--------------------  207 (604)
T ss_pred             EEEEecCCCcHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHh-cCceeccCChhheeE--------------------
Confidence            589999 99999999987  559999999999999999999999 599999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                          +.+.+++|+|||.|..+..         
T Consensus       208 ----------------------------------------------------d~dmhikITDFGsAK~l~~~~~~~~~~~  235 (604)
T KOG0592|consen  208 ----------------------------------------------------DKDGHIKITDFGSAKILSPSQKSQENPV  235 (604)
T ss_pred             ----------------------------------------------------cCCCcEEEeeccccccCChhhccccCcc
Confidence                                                                4567999999999854431         


Q ss_pred             -------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHH
Q 020248          151 -------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       151 -------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~  223 (329)
                             ...+++||..|.+||++.....++.+|+|+||||+|+|+.|.+||.+.+      +                 
T Consensus       236 ~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N------e-----------------  292 (604)
T KOG0592|consen  236 DPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN------E-----------------  292 (604)
T ss_pred             CcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc------H-----------------
Confidence                   1245799999999999999999999999999999999999999999873      1                 


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                               +..+++++.-.+.++..+++.++||++++|..||.+|+|+.+|.+||||.+++|.
T Consensus       293 -------------------------yliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~  347 (604)
T KOG0592|consen  293 -------------------------YLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWE  347 (604)
T ss_pred             -------------------------HHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCcccccCChh
Confidence                                     1236677777888899999999999999999999999999999999999999987


Q ss_pred             hh
Q 020248          304 RD  305 (329)
Q Consensus       304 ~~  305 (329)
                      .-
T Consensus       348 nl  349 (604)
T KOG0592|consen  348 NL  349 (604)
T ss_pred             hh
Confidence            63

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=9.3e-37  Score=261.15  Aligned_cols=209  Identities=30%  Similarity=0.458  Sum_probs=170.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||+|||..+|+.+++... -.++...++.++.+++.|++|||++ .|+||||||.|+|+                     
T Consensus        78 lVfEfm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~-~IlHRDlKPnNLLi---------------------  134 (318)
T KOG0659|consen   78 LVFEFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSK-WILHRDLKPNNLLI---------------------  134 (318)
T ss_pred             EEEEeccccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhh-hhhcccCCccceEE---------------------
Confidence            689999999999998764 5689999999999999999999996 99999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---ccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---AEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~  157 (329)
                                                                         +.+..+|++|||+|+.+..+.   +..+-
T Consensus       135 ---------------------------------------------------s~~g~lKiADFGLAr~f~~p~~~~~~~V~  163 (318)
T KOG0659|consen  135 ---------------------------------------------------SSDGQLKIADFGLARFFGSPNRIQTHQVV  163 (318)
T ss_pred             ---------------------------------------------------cCCCcEEeecccchhccCCCCccccccee
Confidence                                                               446789999999997666432   33467


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |.-|+|||+++|. .|+..+|+||.|||++||+.|.+.|.+.      .+.+++..|.+.+|++.++.|..+...-.|.+
T Consensus       164 TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~------sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~  237 (318)
T KOG0659|consen  164 TRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGD------SDIDQLSKIFRALGTPTPDQWPEMTSLPDYVK  237 (318)
T ss_pred             eeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCC------chHHHHHHHHHHcCCCCcccCccccccccHHH
Confidence            8999999999987 5999999999999999999999999988      68999999999999988777765554433321


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      -       ...+......+      + ...+.++.|||.+||.+||.+|+|+.|+++|+||+..-.+
T Consensus       238 ~-------~~~P~~~~~~l------f-~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~p  290 (318)
T KOG0659|consen  238 I-------QQFPKPPLNNL------F-PAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLP  290 (318)
T ss_pred             H-------hcCCCCccccc------c-ccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCC
Confidence            1       11111111112      1 2335567999999999999999999999999999965433

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=8.7e-37  Score=295.78  Aligned_cols=235  Identities=29%  Similarity=0.485  Sum_probs=169.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||++|++|.+++...  ..++...++.++.||+.||.|||+++|||||||||+|||+........    ..       
T Consensus       209 iv~~~~g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~----~~-------  275 (467)
T PTZ00284        209 IVMPKYGPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVD----PV-------  275 (467)
T ss_pred             EEEeccCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccc----cc-------
Confidence            57899999999988765  459999999999999999999997359999999999999954211000    00       


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                   ...........++|+|||.+..........+||+.
T Consensus       276 ---------------------------------------------~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~  310 (467)
T PTZ00284        276 ---------------------------------------------TNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRH  310 (467)
T ss_pred             ---------------------------------------------cccccCCCCceEEECCCCccccCccccccccCCcc
Confidence                                                         00000012346999999988665555566788999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC--ccccCcc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS--KDYFDRH  238 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~  238 (329)
                      |+|||++.+..|+.++|||||||++|+|++|+.||.+.      +..+++..|.+.+|.+|..|...+...  ..+++..
T Consensus       311 Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~------~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  384 (467)
T PTZ00284        311 YRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH------DNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSA  384 (467)
T ss_pred             ccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhc
Confidence            99999999999999999999999999999999999876      577889999999999999887654221  2233332


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      +........  .....+..............+.|||++||++||++|+|++|+|+||||....
T Consensus       385 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~  445 (467)
T PTZ00284        385 GQLRPCTDP--KHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYY  445 (467)
T ss_pred             ccccccCCH--HHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccC
Confidence            221110000  0011111000000111246789999999999999999999999999998754

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.4e-36  Score=268.28  Aligned_cols=215  Identities=32%  Similarity=0.507  Sum_probs=171.2

Q ss_pred             CcccccchhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||+..+|..++.....  .+++...++.+++||+.||+|||++ ||+||||||.||++                   
T Consensus        94 lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~-~IlHRDLKPQNlLi-------------------  153 (323)
T KOG0594|consen   94 LVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH-GILHRDLKPQNLLI-------------------  153 (323)
T ss_pred             EEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCcceEEE-------------------
Confidence            5899999999999998753  3688889999999999999999995 99999999999999                   


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  155 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~  155 (329)
                                                                           +....+||+|||.|....   ...+..
T Consensus       154 -----------------------------------------------------~~~G~lKlaDFGlAra~~ip~~~yt~e  180 (323)
T KOG0594|consen  154 -----------------------------------------------------SSSGVLKLADFGLARAFSIPMRTYTPE  180 (323)
T ss_pred             -----------------------------------------------------CCCCcEeeeccchHHHhcCCccccccc
Confidence                                                                 335689999999996544   235667


Q ss_pred             CCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ++|.-|+|||++++. .|+...||||+|||++||++++.+|.+.      .+.+++..|.+++|.+.++.|........|
T Consensus       181 vvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~------se~~ql~~If~~lGtP~e~~Wp~v~~~~~~  254 (323)
T KOG0594|consen  181 VVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGD------SEIDQLFRIFRLLGTPNEKDWPGVSSLPDY  254 (323)
T ss_pred             EEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCC------cHHHHHHHHHHHcCCCCccCCCCccccccc
Confidence            889999999999998 6999999999999999999999999988      479999999999999988776544433333


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      -.....+....     .+....       ........+++.+||+++|.+|+||+.+|.||||.........
T Consensus       255 k~~f~~~~~~~-----~l~~~~-------~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~~~~  314 (323)
T KOG0594|consen  255 KAPFPKWPGPK-----DLSSIL-------PKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEKSSQ  314 (323)
T ss_pred             cccCcCCCCcc-----chHHhc-------cccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccchhh
Confidence            22222211110     011111       1112588999999999999999999999999999987654433

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-36  Score=286.31  Aligned_cols=175  Identities=34%  Similarity=0.593  Sum_probs=154.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||.|+| .++|..+++..  ..+++.++++++.||+.||.|||+. +|+|||||..|+++                    
T Consensus        95 ivLELC~~~sL~el~Krr--k~ltEpEary~l~QIv~GlkYLH~~-~IiHRDLKLGNlfL--------------------  151 (592)
T KOG0575|consen   95 IVLELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLKYLHSL-GIIHRDLKLGNLFL--------------------  151 (592)
T ss_pred             EEEEecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHhc-Cceecccchhheee--------------------
Confidence            588999 88999999965  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....|||+|||+|....   ++..+.+
T Consensus       152 ----------------------------------------------------~~~~~VKIgDFGLAt~le~~~Erk~TlC  179 (592)
T KOG0575|consen  152 ----------------------------------------------------NENMNVKIGDFGLATQLEYDGERKKTLC  179 (592)
T ss_pred             ----------------------------------------------------cCcCcEEecccceeeeecCcccccceec
Confidence                                                                445689999999997766   5678889


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |||.|.|||++.....|+.+||||+||++|.|+.|++||....      =.+                            
T Consensus       180 GTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~------vke----------------------------  225 (592)
T KOG0575|consen  180 GTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKT------VKE----------------------------  225 (592)
T ss_pred             CCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccch------HHH----------------------------
Confidence            9999999999999999999999999999999999999998651      011                            


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                    ...++-...|.+|...+.++.|||++||+.||.+|||+++||.|+||+
T Consensus       226 --------------ty~~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~  273 (592)
T KOG0575|consen  226 --------------TYNKIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFK  273 (592)
T ss_pred             --------------HHHHHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhh
Confidence                          134555667778888899999999999999999999999999999993

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-36  Score=280.29  Aligned_cols=179  Identities=32%  Similarity=0.566  Sum_probs=151.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.|++....   +++.++..||+.++.||+|||.+ ||+|||||-+|||++.                  
T Consensus       347 VVMEym~ggsLTDvVt~~~---~~E~qIA~Icre~l~aL~fLH~~-gIiHrDIKSDnILL~~------------------  404 (550)
T KOG0578|consen  347 VVMEYMEGGSLTDVVTKTR---MTEGQIAAICREILQGLKFLHAR-GIIHRDIKSDNILLTM------------------  404 (550)
T ss_pred             EEEeecCCCchhhhhhccc---ccHHHHHHHHHHHHHHHHHHHhc-ceeeeccccceeEecc------------------
Confidence            489999 999999999865   89999999999999999999996 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...+||+|||++.....   ...+.+
T Consensus       405 ------------------------------------------------------~g~vKltDFGFcaqi~~~~~KR~TmV  430 (550)
T KOG0578|consen  405 ------------------------------------------------------DGSVKLTDFGFCAQISEEQSKRSTMV  430 (550)
T ss_pred             ------------------------------------------------------CCcEEEeeeeeeeccccccCcccccc
Confidence                                                                  45799999999855543   446679


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||++|||||+.....|++++||||||++++||+.|.+||...      +....+-+|.. -|++.               
T Consensus       431 GTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE------~PlrAlyLIa~-ng~P~---------------  488 (550)
T KOG0578|consen  431 GTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNE------NPLRALYLIAT-NGTPK---------------  488 (550)
T ss_pred             CCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCC------ChHHHHHHHhh-cCCCC---------------
Confidence            999999999999999999999999999999999999999865      34555555532 22211               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                             ...+...+..|+|||.+||+.|+++|+||.|||+||||...
T Consensus       489 -----------------------lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~a  529 (550)
T KOG0578|consen  489 -----------------------LKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKMA  529 (550)
T ss_pred             -----------------------cCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhhc
Confidence                                   11234457899999999999999999999999999999543

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.1e-36  Score=274.82  Aligned_cols=206  Identities=25%  Similarity=0.398  Sum_probs=167.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||..+|.-++.... -.|++.+++.++.||+.||+|||++ ||+|||||.+|||++                    
T Consensus       195 lVFeYMdhDL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~cH~~-gvlHRDIK~SNiLid--------------------  252 (560)
T KOG0600|consen  195 LVFEYMDHDLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEYCHSR-GVLHRDIKGSNILID--------------------  252 (560)
T ss_pred             EEEecccchhhhhhcCCC-cccChHHHHHHHHHHHHHHHHHhhc-CeeeccccccceEEc--------------------
Confidence            699999999999988742 3599999999999999999999996 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~~  156 (329)
                                                                          ....+||+|||+|..+..    +.+..+
T Consensus       253 ----------------------------------------------------n~G~LKiaDFGLAr~y~~~~~~~~T~rV  280 (560)
T KOG0600|consen  253 ----------------------------------------------------NNGVLKIADFGLARFYTPSGSAPYTSRV  280 (560)
T ss_pred             ----------------------------------------------------CCCCEEeccccceeeccCCCCcccccce
Confidence                                                                356899999999975542    466778


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .|+-|+|||+++|. .|+..+|+||+|||+.||++|++.|.+.      ++.+++..|.++.|.+.+..|......  ++
T Consensus       281 vTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~------tEveQl~kIfklcGSP~e~~W~~~kLP--~~  352 (560)
T KOG0600|consen  281 VTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGR------TEVEQLHKIFKLCGSPTEDYWPVSKLP--HA  352 (560)
T ss_pred             EEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCc------cHHHHHHHHHHHhCCCChhccccccCC--cc
Confidence            89999999999987 6999999999999999999999999988      799999999999999998886622221  11


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      ........+.    ..+.+.       -...++..++|+..||..||.+|.||.++|+|+||+.
T Consensus       353 ~~~kp~~~y~----r~l~E~-------~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  353 TIFKPQQPYK----RRLRET-------FKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             cccCCCCccc----chHHHH-------hccCCHHHHHHHHHHhccCccccccHHHHhcCccccc
Confidence            1111111000    011222       1234678999999999999999999999999999943

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-36  Score=253.32  Aligned_cols=181  Identities=30%  Similarity=0.491  Sum_probs=145.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||+| |+.|.--+...  .-+++..+.+..+||+.||+|||.+ ||+|||+||+|+++...                 
T Consensus        87 lvFe~m~G~dl~~eIV~R--~~ySEa~aSH~~rQiLeal~yCH~n-~IvHRDvkP~nllLASK-----------------  146 (355)
T KOG0033|consen   87 LVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILEALAYCHSN-GIVHRDLKPENLLLASK-----------------  146 (355)
T ss_pred             EEEecccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc-CceeccCChhheeeeec-----------------
Confidence            689999 88776555443  2389999999999999999999996 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          +...-+||+|||.|.....  -....+|
T Consensus       147 ----------------------------------------------------~~~A~vKL~~FGvAi~l~~g~~~~G~~G  174 (355)
T KOG0033|consen  147 ----------------------------------------------------AKGAAVKLADFGLAIEVNDGEAWHGFAG  174 (355)
T ss_pred             ----------------------------------------------------cCCCceeecccceEEEeCCccccccccC
Confidence                                                                3345689999999976653  3345688


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ||.|+|||++...+|+.++|||+.|+|+|-|+.|++||.+.      +.......|+                       
T Consensus       175 tP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~------~~~rlye~I~-----------------------  225 (355)
T KOG0033|consen  175 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE------DQHRLYEQIK-----------------------  225 (355)
T ss_pred             CCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc------cHHHHHHHHh-----------------------
Confidence            99999999999999999999999999999999999999875      2333333332                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCC----ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRF----SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         ...+++    .....+++++|+++||..||.+|+|+.|+|+|||+..+.
T Consensus       226 -------------------~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  226 -------------------AGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNRE  274 (355)
T ss_pred             -------------------ccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcchH
Confidence                               111211    123467899999999999999999999999999998753

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-36  Score=259.76  Aligned_cols=185  Identities=29%  Similarity=0.450  Sum_probs=165.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||. |+.|++++.+.  +.+++..++.++.||+.|++|||+ ++|++||+||+|||+                    
T Consensus       121 mvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH~-~~iiYRDLKPENiLl--------------------  177 (355)
T KOG0616|consen  121 MVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLHS-LDIIYRDLKPENLLL--------------------  177 (355)
T ss_pred             EEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHh-cCeeeccCChHHeee--------------------
Confidence            689999 99999999987  459999999999999999999999 599999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          +....++++|||+|.+......+.+|||
T Consensus       178 ----------------------------------------------------D~~G~iKitDFGFAK~v~~rT~TlCGTP  205 (355)
T KOG0616|consen  178 ----------------------------------------------------DQNGHIKITDFGFAKRVSGRTWTLCGTP  205 (355)
T ss_pred             ----------------------------------------------------ccCCcEEEEeccceEEecCcEEEecCCc
Confidence                                                                5578999999999999998888999999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++...+|+.++|.||||+++|||+.|++||...+      ...                               
T Consensus       206 eYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~------~~~-------------------------------  248 (355)
T KOG0616|consen  206 EYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDN------PIQ-------------------------------  248 (355)
T ss_pred             cccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCC------hHH-------------------------------
Confidence            9999999999999999999999999999999999997652      111                               


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~~  308 (329)
                                 -.++++.....+|...+.+++|||.++|+.|-.+|.     -..+|.+||||++..|..-..+
T Consensus       249 -----------iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r  311 (355)
T KOG0616|consen  249 -----------IYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQR  311 (355)
T ss_pred             -----------HHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccccHHHHhhc
Confidence                       146777788888999999999999999999999993     4678999999999988655443

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=257.32  Aligned_cols=187  Identities=29%  Similarity=0.479  Sum_probs=154.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||+| |+.|++.+....+..+++.++..|+.||..|+.|||+ ++|.||||||+|+|+...                 
T Consensus       136 iVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~-~nIAHRDlKpENLLyt~t-----------------  197 (400)
T KOG0604|consen  136 IVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHS-MNIAHRDLKPENLLYTTT-----------------  197 (400)
T ss_pred             eeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-cchhhccCChhheeeecC-----------------
Confidence            699999 9999999999887889999999999999999999999 699999999999999543                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          ..+..+||+|||+|.....  ...+.+.
T Consensus       198 ----------------------------------------------------~~na~lKLtDfGFAK~t~~~~~L~TPc~  225 (400)
T KOG0604|consen  198 ----------------------------------------------------SPNAPLKLTDFGFAKETQEPGDLMTPCF  225 (400)
T ss_pred             ----------------------------------------------------CCCcceEecccccccccCCCccccCCcc
Confidence                                                                3456789999999966553  3455677


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |++|.|||++--.+|...+|+||+||+.|.|+.|++||....+..                 +++.|.            
T Consensus       226 TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~a-----------------ispgMk------------  276 (400)
T KOG0604|consen  226 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-----------------ISPGMK------------  276 (400)
T ss_pred             cccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCcc-----------------CChhHH------------
Confidence            999999999998899999999999999999999999998763221                 122121            


Q ss_pred             cCchhhhccccccchhHHHhhhcCCC----hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                     .++..+.|.++    ...++...|+|+.+|+.+|++|+|+.|+|+|||+..-.
T Consensus       277 ---------------~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~  329 (400)
T KOG0604|consen  277 ---------------RRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYE  329 (400)
T ss_pred             ---------------hHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcccc
Confidence                           22223333333    34578899999999999999999999999999998653

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-35  Score=280.81  Aligned_cols=184  Identities=30%  Similarity=0.492  Sum_probs=158.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||.||+ ||.|++++..+  ++|++.++.++++||+.|+.|||. .+|||||+||+|+|+                    
T Consensus        89 lvlEyv~gGELFdylv~k--G~l~e~eaa~ff~QIi~gv~yCH~-~~icHRDLKpENlLL--------------------  145 (786)
T KOG0588|consen   89 LVLEYVPGGELFDYLVRK--GPLPEREAAHFFRQILDGVSYCHA-FNICHRDLKPENLLL--------------------  145 (786)
T ss_pred             EEEEecCCchhHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHhh-hcceeccCCchhhhh--------------------
Confidence            588999 99999999987  569999999999999999999999 699999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +...++||+|||+|....  .-.-+.+|
T Consensus       146 ----------------------------------------------------d~~~nIKIADFGMAsLe~~gklLeTSCG  173 (786)
T KOG0588|consen  146 ----------------------------------------------------DVKNNIKIADFGMASLEVPGKLLETSCG  173 (786)
T ss_pred             ----------------------------------------------------hcccCEeeeccceeecccCCccccccCC
Confidence                                                                334569999999995433  23455689


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|.+||++.|.+| +.++||||+|||||.|++|..||.+.+       ...+                          
T Consensus       174 SPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN-------ir~L--------------------------  220 (786)
T KOG0588|consen  174 SPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN-------IRVL--------------------------  220 (786)
T ss_pred             CcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc-------HHHH--------------------------
Confidence            999999999999988 799999999999999999999997531       1111                          


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                                     +.++..+.+.++...+.++.|||++||..||++|+|..||++|||+.+........
T Consensus       221 ---------------LlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~~~~  276 (786)
T KOG0588|consen  221 ---------------LLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLPSSK  276 (786)
T ss_pred             ---------------HHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCCCChhh
Confidence                           35555677788988999999999999999999999999999999999887766653

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=264.28  Aligned_cols=188  Identities=31%  Similarity=0.441  Sum_probs=157.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||+||+ |+.|+..+.+.  +.++++.++.++..|+.||.|||++ |||||||||+|||+                    
T Consensus       102 lVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH~~-gIiyRDlKPENILL--------------------  158 (357)
T KOG0598|consen  102 LVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLHSK-GIIYRDLKPENILL--------------------  158 (357)
T ss_pred             EEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHeee--------------------
Confidence            689999 99999999976  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc---ccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~---~~~~~~~~  156 (329)
                                                                          +...+++|+|||++...   .......+
T Consensus       159 ----------------------------------------------------d~~GHi~LtDFgL~k~~~~~~~~t~tfc  186 (357)
T KOG0598|consen  159 ----------------------------------------------------DEQGHIKLTDFGLCKEDLKDGDATRTFC  186 (357)
T ss_pred             ----------------------------------------------------cCCCcEEEeccccchhcccCCCcccccc
Confidence                                                                55789999999998532   23556679


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|||||++.+.+|+..+|.||||+++|+|++|.+||...+      .....                          
T Consensus       187 GT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~------~~~~~--------------------------  234 (357)
T KOG0598|consen  187 GTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED------VKKMY--------------------------  234 (357)
T ss_pred             CCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc------HHHHH--------------------------
Confidence            9999999999999999999999999999999999999998763      11121                          


Q ss_pred             ccCchhhhccccccchhHHHhhhc-CCChhhHHHHHHHHhhccCCCCCCCc----CHHHHhcCCCcCCCCCChhhhhcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKY-RFSETDAREFAEFLVPLLDFTPEKRP----TAQQCLQHPWLSLRNSTRDETKNKS  311 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dll~~~L~~dP~~R~----ta~ell~hpwf~~~~~~~~~~~~~~  311 (329)
                                      +++...+. ..+...+.+++||++++|+.||++|+    .+.+|-+||||..++|.....+.-.
T Consensus       235 ----------------~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~  298 (357)
T KOG0598|consen  235 ----------------DKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLS  298 (357)
T ss_pred             ----------------HHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCC
Confidence                            22223331 22333678999999999999999996    6999999999999999877665543

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=275.31  Aligned_cols=176  Identities=27%  Similarity=0.493  Sum_probs=150.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |+.|++.+...  +.+.+..++.+++||+.|++|||++ ||+||||||+|+++..                  
T Consensus        97 ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~H~~-gi~HRDLK~ENilld~------------------  155 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYCHSR-GIVHRDLKPENILLDG------------------  155 (370)
T ss_pred             EEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEecC------------------
Confidence            689999 89999999984  5699999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCC-CceEEeecCccccc---ccccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID-MRCKVVDFGNACRA---NKQFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dfg~a~~~---~~~~~~~  155 (329)
                                                                            . ..+||+|||++...   .......
T Consensus       156 ------------------------------------------------------~~~~~Kl~DFG~s~~~~~~~~~l~t~  181 (370)
T KOG0583|consen  156 ------------------------------------------------------NEGNLKLSDFGLSAISPGEDGLLKTF  181 (370)
T ss_pred             ------------------------------------------------------CCCCEEEeccccccccCCCCCcccCC
Confidence                                                                  3 68999999999655   3456678


Q ss_pred             CCCCCCcchHHhhcCC-CC-ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRAG-YS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~-~s-~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      +|++.|+|||++.+.. |+ .++||||+|+++|.|++|+.||....      ....                        
T Consensus       182 cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~------~~~l------------------------  231 (370)
T KOG0583|consen  182 CGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN------VPNL------------------------  231 (370)
T ss_pred             CCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc------HHHH------------------------
Confidence            9999999999999977 74 89999999999999999999997641      1111                        


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhh-HHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETD-AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                        ..++....+.++... +.++.+|+.+||..||.+|+|+.|+++||||+.
T Consensus       232 ------------------~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  232 ------------------YRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             ------------------HHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence                              122334445556666 889999999999999999999999999999997

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=3.7e-34  Score=260.19  Aligned_cols=205  Identities=26%  Similarity=0.483  Sum_probs=156.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.||+.||+|||++ ||+||||||+||+++                    
T Consensus        80 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nil~~--------------------  137 (288)
T cd07871          80 LVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKR-KILHRDLKPQNLLIN--------------------  137 (288)
T ss_pred             EEEeCCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEC--------------------
Confidence            589999779998887543 3478999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       138 ----------------------------------------------------~~~~~kl~DfG~~~~~~~~~~~~~~~~~  165 (288)
T cd07871         138 ----------------------------------------------------EKGELKLADFGLARAKSVPTKTYSNEVV  165 (288)
T ss_pred             ----------------------------------------------------CCCCEEECcCcceeeccCCCccccCcee
Confidence                                                                245799999999854332   2233466


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+ ..++.++||||+||++|+|++|..||.+.      +....+..+.+.+|.++...+........+..
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (288)
T cd07871         166 TLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGS------TVKEELHLIFRLLGTPTEETWPGITSNEEFRS  239 (288)
T ss_pred             cccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHHhhccccchhhhc
Confidence            889999999876 46899999999999999999999999876      46778888999999988877655433322221


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..-..        +.......    .....+.++.|||++||++||.+|+|+.|+++||||
T Consensus       240 ~~~~~--------~~~~~~~~----~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         240 YLFPQ--------YRAQPLIN----HAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             cccCc--------cCCCchHH----hCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            11000        00000000    112235678999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=5.5e-34  Score=258.71  Aligned_cols=202  Identities=28%  Similarity=0.472  Sum_probs=156.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus        86 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~-~iiH~dlkp~Nil~~--------------------  144 (290)
T cd07862          86 LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVT--------------------  144 (290)
T ss_pred             EEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEc--------------------
Confidence            58999988999999876555689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       145 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  172 (290)
T cd07862         145 ----------------------------------------------------SSGQIKLADFGLARIYSFQMALTSVVVT  172 (290)
T ss_pred             ----------------------------------------------------CCCCEEEccccceEeccCCccccccccc
Confidence                                                                245799999999855432  23345678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh-cCCCCccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI-GGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~-~~~~~~~~~~~  237 (329)
                      +.|+|||.+.+..++.++||||+||++|+|++|.+||.+.      .+.+.+..+....|.+++..+. ........+..
T Consensus       173 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  246 (290)
T cd07862         173 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS  246 (290)
T ss_pred             ccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCC------CHHHHHHHHHHHhCCCChhhchhhhcccchhccC
Confidence            9999999999889999999999999999999999999876      5677888888888865443322 11111111110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..         .....++       ....+..+.+|+.+||+.||++|||+.|+++||||
T Consensus       247 ~~---------~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         247 KS---------AQPIEKF-------VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             CC---------CCCHHHH-------ccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            00         0011111       12245678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=254.34  Aligned_cols=209  Identities=31%  Similarity=0.496  Sum_probs=170.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+|..||..++...    ++..++++|++|++.|+.|||+ +||+||||||+||++.                    
T Consensus        98 ~v~e~m~~nl~~vi~~e----lDH~tis~i~yq~~~~ik~lhs-~~IihRdLkPsnivv~--------------------  152 (369)
T KOG0665|consen   98 LVMELMDANLCQVILME----LDHETISYILYQMLCGIKHLHS-AGIIHRDLKPSNIVVN--------------------  152 (369)
T ss_pred             HHHHhhhhHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHh-cceeecccCcccceec--------------------
Confidence            58999999999999854    8899999999999999999999 6999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~~  158 (329)
                                                                          .++.+|+.|||+|......  .+..+.+
T Consensus       153 ----------------------------------------------------~~~~lKi~dfg~ar~e~~~~~mtpyVvt  180 (369)
T KOG0665|consen  153 ----------------------------------------------------SDCTLKILDFGLARTEDTDFMMTPYVVT  180 (369)
T ss_pred             ----------------------------------------------------chhheeeccchhhcccCcccccCchhhe
Confidence                                                                3567899999999665543  3445778


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .+|+|||++.+..|...+||||+||++.||++|..+|.+.      +..+++..|.+.+|.+-+.+..........|-+.
T Consensus       181 Ryyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~------d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~  254 (369)
T KOG0665|consen  181 RYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGK------DHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVEN  254 (369)
T ss_pred             eeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCc------hHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhc
Confidence            8999999999999999999999999999999999999987      7899999999999999998887665554433331


Q ss_pred             C-chhhhccccccchhHHH-----hhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          239 G-DLKRIRRLKFWSLDRLL-----VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       239 ~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                      . +...      ..+.+.+     ......+......++|++.+||..||++|.|+.++|+||||+
T Consensus       255 ~~~y~~------~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  255 RPQYQA------ISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             ChHhhc------cchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            1 1111      1122222     122223334567899999999999999999999999999997

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=261.55  Aligned_cols=184  Identities=33%  Similarity=0.481  Sum_probs=145.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +.|||+ |+||.+++....+ .|+++.++.+++||+.||.|||++ |++|+||||+|||+...                 
T Consensus        93 i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~-g~vH~DiK~~NiLl~~~-----------------  153 (313)
T KOG0198|consen   93 IFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK-GIVHCDIKPANILLDPS-----------------  153 (313)
T ss_pred             eeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC-CEeccCcccceEEEeCC-----------------
Confidence            479999 9999999999865 699999999999999999999996 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||.+.....      ...
T Consensus       154 ------------------------------------------------------~~~~KlaDFG~a~~~~~~~~~~~~~~  179 (313)
T KOG0198|consen  154 ------------------------------------------------------NGDVKLADFGLAKKLESKGTKSDSEL  179 (313)
T ss_pred             ------------------------------------------------------CCeEEeccCccccccccccccccccc
Confidence                                                                  35799999998865542      233


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...||+.|||||++... .....+|||||||++.||+||+.||...        ......+......             
T Consensus       180 ~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~--------~~~~~~~~~ig~~-------------  238 (313)
T KOG0198|consen  180 SVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF--------FEEAEALLLIGRE-------------  238 (313)
T ss_pred             cccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh--------cchHHHHHHHhcc-------------
Confidence            56889999999999953 3446999999999999999999999752        0111111111000             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                           .   .....+...+.++.+||.+||+.||++||||+++|+|||......
T Consensus       239 ---------------------~---~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  239 ---------------------D---SLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             ---------------------C---CCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence                                 0   001245556789999999999999999999999999999987543

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=7.4e-34  Score=263.37  Aligned_cols=209  Identities=29%  Similarity=0.454  Sum_probs=159.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||+++|.+++...  ..+++..++.++.||+.||.|||+. ||+||||||+||+++                    
T Consensus        81 lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll~--------------------  137 (338)
T cd07859          81 VVFELMESDLHQVIKAN--DDLTPEHHQFFLYQLLRALKYIHTA-NVFHRDLKPKNILAN--------------------  137 (338)
T ss_pred             EEEecCCCCHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEC--------------------
Confidence            58999988999988765  3489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~~  154 (329)
                                                                          ....++|+|||.+......      ...
T Consensus       138 ----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~  165 (338)
T cd07859         138 ----------------------------------------------------ADCKLKICDFGLARVAFNDTPTAIFWTD  165 (338)
T ss_pred             ----------------------------------------------------CCCcEEEccCccccccccccCccccccC
Confidence                                                                3457999999998543211      123


Q ss_pred             CCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..+++.|+|||++.+  ..++.++|||||||++|+|++|+.||.+.      +....+..+...+|.++...........
T Consensus       166 ~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~  239 (338)
T cd07859         166 YVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK------NVVHQLDLITDLLGTPSPETISRVRNEK  239 (338)
T ss_pred             CCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHHhhhhh
Confidence            468899999999876  57899999999999999999999999876      4566778888899988877665432211


Q ss_pred             --cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          233 --DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                        .++.....      .........       ....+..+.+||.+||+.||++|||+.|+++||||+.....
T Consensus       240 ~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~~  299 (338)
T cd07859         240 ARRYLSSMRK------KQPVPFSQK-------FPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKV  299 (338)
T ss_pred             HHHHHHhhcc------cCCCchHHh-------cCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCcc
Confidence              11110000      000000000       01234678899999999999999999999999999987654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.2e-33  Score=271.69  Aligned_cols=211  Identities=26%  Similarity=0.453  Sum_probs=159.7

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||||+++|.+++...  ....+++..++.++.||+.||+|||++ ||+||||||+||+++..                
T Consensus       144 lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~-~IiHrDLKp~NILl~~~----------------  206 (440)
T PTZ00036        144 VVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK-FICHRDLKPQNLLIDPN----------------  206 (440)
T ss_pred             EEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCcCHHHEEEcCC----------------
Confidence            48999988888877643  234589999999999999999999995 99999999999999321                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                             ...++|+|||.+....  .......
T Consensus       207 -------------------------------------------------------~~~vkL~DFGla~~~~~~~~~~~~~  231 (440)
T PTZ00036        207 -------------------------------------------------------THTLKLCDFGSAKNLLAGQRSVSYI  231 (440)
T ss_pred             -------------------------------------------------------CCceeeeccccchhccCCCCcccCC
Confidence                                                                   2358999999996543  2334457


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+. .++.++|||||||++|+|++|++||.+.      ...+.+..+.+.+|.++.+........  +.
T Consensus       232 ~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~------~~~~~~~~i~~~~~~p~~~~~~~~~~~--~~  303 (440)
T PTZ00036        232 CSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQ------SSVDQLVRIIQVLGTPTEDQLKEMNPN--YA  303 (440)
T ss_pred             CCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHHhchh--hh
Confidence            78999999998865 6899999999999999999999999876      467788889999998776554322110  00


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      +.  .+..   .....+...      ++...+.++.+||.+||++||++|+|+.|+++||||.....
T Consensus       304 ~~--~~~~---~~~~~l~~~------~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        304 DI--KFPD---VKPKDLKKV------FPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             cc--cCCc---cCchhHHHH------hccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence            00  0000   000011111      23345678999999999999999999999999999987654

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=1.8e-33  Score=255.00  Aligned_cols=207  Identities=29%  Similarity=0.517  Sum_probs=153.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+.+++.+.+.... ..++...++.++.||+.||.|||+. |++||||||+||++.                    
T Consensus        77 lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nill~--------------------  134 (287)
T cd07848          77 LVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKAIHWCHKN-DIVHRDIKPENLLIS--------------------  134 (287)
T ss_pred             EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc--------------------
Confidence            589999444444444322 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~~  156 (329)
                                                                          ....++|+|||.+.....    ......
T Consensus       135 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  162 (287)
T cd07848         135 ----------------------------------------------------HNDVLKLCDFGFARNLSEGSNANYTEYV  162 (287)
T ss_pred             ----------------------------------------------------CCCcEEEeeccCcccccccccccccccc
Confidence                                                                245789999999865432    222346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|+||+||++|+|++|..||...      ...+.+..+.+..|++|......+.....+..
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (287)
T cd07848         163 ATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGE------SEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHG  236 (287)
T ss_pred             cccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhhCCCCHHHHHhhhccchhcc
Confidence            788999999999888999999999999999999999999876      46677888899999998776653322111100


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..  ......  .......      .....+..+.+||++||++||++|+|++|+++||||
T Consensus       237 ~~--~~~~~~--~~~~~~~------~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         237 LR--FPAVNH--PQSLERR------YLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             cc--cCcccC--cccHHHh------hhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            00  000000  0000000      122346789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.3e-33  Score=258.34  Aligned_cols=213  Identities=25%  Similarity=0.405  Sum_probs=155.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.||+.||+|||++ ||+||||||+||++.                    
T Consensus        80 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill~--------------------  137 (303)
T cd07869          80 LVFEYVHTDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQR-YILHRDLKPQNLLIS--------------------  137 (303)
T ss_pred             EEEECCCcCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC--------------------
Confidence            589999888888887643 4588999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       138 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  165 (303)
T cd07869         138 ----------------------------------------------------DTGELKLADFGLARAKSVPSHTYSNEVV  165 (303)
T ss_pred             ----------------------------------------------------CCCCEEECCCCcceeccCCCccCCCCcc
Confidence                                                                245799999999854332   2234567


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+. .++.++||||+||++|+|++|..||.+..     +....+..+...+|.+....+........+ +
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (303)
T cd07869         166 TLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMK-----DIQDQLERIFLVLGTPNEDTWPGVHSLPHF-K  239 (303)
T ss_pred             cCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCc-----cHHHHHHHHHHHhCCCChhhccchhhcccc-c
Confidence            8899999998764 58899999999999999999999998653     345677778888887665544332211111 1


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      ... +.   ............     .......+.+|+++||++||++|+|+.|+++||||+....
T Consensus       240 ~~~-~~---~~~~~~~~~~~~-----~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~~  296 (303)
T cd07869         240 PER-FT---LYSPKNLRQAWN-----KLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPP  296 (303)
T ss_pred             ccc-cc---ccCCccHHHHhh-----ccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccCCh
Confidence            000 00   000001111110     0112457889999999999999999999999999988653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.8e-33  Score=264.11  Aligned_cols=211  Identities=30%  Similarity=0.532  Sum_probs=158.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|...+..    .++...+..++.|++.||.|||++ ||+||||||+||++.                    
T Consensus       106 lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~--------------------  160 (364)
T cd07875         106 IVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  160 (364)
T ss_pred             EEEeCCCCCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHHHEEEC--------------------
Confidence            5899998888887754    278899999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~~  158 (329)
                                                                          ....++|+|||.+......  .....++
T Consensus       161 ----------------------------------------------------~~~~~kL~DfG~a~~~~~~~~~~~~~~t  188 (364)
T cd07875         161 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  188 (364)
T ss_pred             ----------------------------------------------------CCCcEEEEeCCCccccCCCCcccCCccc
Confidence                                                                2457999999999655432  2345678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC-ccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~  237 (329)
                      ..|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+.+.+|.+++++....... ..+...
T Consensus       189 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (364)
T cd07875         189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT------DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVEN  262 (364)
T ss_pred             CCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhh
Confidence            9999999999999999999999999999999999999876      567788888888888776665443222 112111


Q ss_pred             cCchhhhccccccchhHHHhh-----hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVD-----KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ......      ...+++...     ...........+.+||.+||++||.+|||+.|+|+||||...
T Consensus       263 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~~  324 (364)
T cd07875         263 RPKYAG------YSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  324 (364)
T ss_pred             CCCcCC------CChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCcccccc
Confidence            111110      001111110     001112235678999999999999999999999999999753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.1e-33  Score=265.04  Aligned_cols=211  Identities=30%  Similarity=0.535  Sum_probs=157.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|...+..    .++...+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus       103 lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~-~ivHrDlkp~NIl~~--------------------  157 (359)
T cd07876         103 LVMELMDANLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  157 (359)
T ss_pred             EEEeCCCcCHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEC--------------------
Confidence            5899997788877653    388899999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       158 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t  185 (359)
T cd07876         158 ----------------------------------------------------SDCTLKILDFGLARTACTNFMMTPYVVT  185 (359)
T ss_pred             ----------------------------------------------------CCCCEEEecCCCccccccCccCCCCccc
Confidence                                                                245799999999854432  22345678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC-CccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ-SKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~-~~~~~~~  237 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+.+.+|.++..+...... ...+...
T Consensus       186 ~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (359)
T cd07876         186 RYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT------DHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVEN  259 (359)
T ss_pred             CCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999876      56778888888888877766433211 1111111


Q ss_pred             cCchhhhccccccchhHHHhh-----hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVD-----KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .......      ...+....     ........+..+.+||.+||++||++|||++|+++||||...
T Consensus       260 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  321 (359)
T cd07876         260 RPQYPGI------SFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVW  321 (359)
T ss_pred             CCCCCCc------chhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhh
Confidence            1111100      01111000     001122345678999999999999999999999999999853

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=2e-33  Score=262.79  Aligned_cols=216  Identities=29%  Similarity=0.484  Sum_probs=158.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|...+..    .++...+..++.|++.||.|||++ ||+||||||+||++.                    
T Consensus        99 lv~e~~~~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~-givHrDikp~Nill~--------------------  153 (355)
T cd07874          99 LVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  153 (355)
T ss_pred             EEhhhhcccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHEEEC--------------------
Confidence            5899997788877754    288999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~~  158 (329)
                                                                          ....++|+|||.+......  .....++
T Consensus       154 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~t  181 (355)
T cd07874         154 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  181 (355)
T ss_pred             ----------------------------------------------------CCCCEEEeeCcccccCCCccccCCcccc
Confidence                                                                2457999999999655432  2345678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC-ccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~  237 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+.+.+|...+++....... ..+...
T Consensus       182 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (355)
T cd07874         182 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVEN  255 (355)
T ss_pred             CCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhc
Confidence            9999999999999999999999999999999999999876      466777888888887766665443322 222222


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .......... ....+................+.+||.+||++||++|||+.|+++||||...
T Consensus       256 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         256 RPKYAGLTFP-KLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             CCccccccch-hhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            1111110000 0000000000001122335678999999999999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=4.7e-33  Score=255.99  Aligned_cols=224  Identities=27%  Similarity=0.382  Sum_probs=154.7

Q ss_pred             CcccccchhHHHHHHhhc-------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~-------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      +||||++++|.+++....       ...++...++.++.||+.||.|||++ ||+||||||+||++....          
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivHrDlkp~Nil~~~~~----------  145 (317)
T cd07868          77 LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----------  145 (317)
T ss_pred             EEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEecCC----------
Confidence            578999889999887532       12488999999999999999999995 999999999999994310          


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  151 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--  151 (329)
                                                                                .....++|+|||.+......  
T Consensus       146 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07868         146 ----------------------------------------------------------PERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             ----------------------------------------------------------CCcCcEEEeecCceeccCCCCc
Confidence                                                                      12347999999998654321  


Q ss_pred             ----cccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC---CCchHHHHHHHHHhCCCcHH
Q 020248          152 ----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       152 ----~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~  223 (329)
                          .....+|+.|+|||++.+. .++.++||||+||++|+|++|.+||........   ......+..+...+|.++..
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (317)
T cd07868         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADK  247 (317)
T ss_pred             cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChH
Confidence                2345678899999999875 589999999999999999999999976432111   11356778888888887765


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .+..................... ........+..   ........+.+||++||++||++|+|++|+|+||||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         248 DWEDIKKMPEHSTLMKDFRRNTY-TNCSLIKYMEK---HKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HhHHHhhccchhhhhhhhhcccc-CcccccchHHh---cCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            54432211111000000000000 00000111110   011123568899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=257.21  Aligned_cols=190  Identities=35%  Similarity=0.556  Sum_probs=153.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||+|| ++|+.+++......++++..|..|+++++.||.|||++ |.||||||+.|||+                    
T Consensus       101 vVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~-G~IHRdvKAgnILi--------------------  159 (516)
T KOG0582|consen  101 VVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN-GHIHRDVKAGNILI--------------------  159 (516)
T ss_pred             EeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc-CceecccccccEEE--------------------
Confidence            589999 99999999998878899999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-------KQF  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-------~~~  152 (329)
                                                                          +....|+|+|||.+..+.       ...
T Consensus       160 ----------------------------------------------------~~dG~VkLadFgvsa~l~~~G~R~~~rf  187 (516)
T KOG0582|consen  160 ----------------------------------------------------DSDGTVKLADFGVSASLFDSGDRQVTRF  187 (516)
T ss_pred             ----------------------------------------------------cCCCcEEEcCceeeeeecccCceeeEee
Confidence                                                                456789999999872221       122


Q ss_pred             ccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          153 AEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ...+|+++|||||++..  ..|..|+||||||++..||++|..||..++        ..-.+|..+-|.+|........+
T Consensus       188 ~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~p--------PmkvLl~tLqn~pp~~~t~~~~~  259 (516)
T KOG0582|consen  188 NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYP--------PMKVLLLTLQNDPPTLLTSGLDK  259 (516)
T ss_pred             ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCC--------hHHHHHHHhcCCCCCcccccCCh
Confidence            56689999999999654  369999999999999999999999998763        12234556666666433110000


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                    .......+.|+.|+..||+.||++||||+++++|+||+...
T Consensus       260 ------------------------------d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  260 ------------------------------DEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             ------------------------------HHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhcc
Confidence                                          01122356999999999999999999999999999999765

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.9e-34  Score=245.40  Aligned_cols=180  Identities=33%  Similarity=0.547  Sum_probs=145.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||.| .+.|+|++...-  .+++...+.|++|++.|+.|||.+ +|+||||||+|||+                    
T Consensus       100 lVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~-~IVHRDLKpENILl--------------------  156 (411)
T KOG0599|consen  100 LVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHAR-NIVHRDLKPENILL--------------------  156 (411)
T ss_pred             hhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhheee--------------------
Confidence            689999 789999999874  499999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +.+.+++|.|||+++...  ......+|
T Consensus       157 ----------------------------------------------------ddn~~i~isDFGFa~~l~~GekLrelCG  184 (411)
T KOG0599|consen  157 ----------------------------------------------------DDNMNIKISDFGFACQLEPGEKLRELCG  184 (411)
T ss_pred             ----------------------------------------------------ccccceEEeccceeeccCCchhHHHhcC
Confidence                                                                446789999999997765  45677899


Q ss_pred             CCCCcchHHhh-----c-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          158 TRQYRAPEVIL-----R-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       158 ~~~y~aPE~~~-----~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ||+|+|||.+.     + ..||..+|+|++|+|.|.|+.|.+||-..      .+..-+..|++  |.            
T Consensus       185 TPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR------kQmlMLR~Ime--Gk------------  244 (411)
T KOG0599|consen  185 TPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR------KQMLMLRMIME--GK------------  244 (411)
T ss_pred             CCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHh--cc------------
Confidence            99999999875     2 25899999999999999999999999654      12222222221  11            


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                        |.-..                      +-....+....|||.+||+.||++|+|++|+|+||||..
T Consensus       245 --yqF~s----------------------peWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  245 --YQFRS----------------------PEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             --cccCC----------------------cchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence              00000                      011233678899999999999999999999999999943

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.4e-33  Score=260.42  Aligned_cols=200  Identities=24%  Similarity=0.391  Sum_probs=160.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ ||++..++...  +.|++..++.++.+.+.|++.+|+ .|+|||||||+|+|+                    
T Consensus       218 LiMEylPGGD~mTLL~~~--~~L~e~~arfYiaE~vlAI~~iH~-~gyIHRDIKPdNlLi--------------------  274 (550)
T KOG0605|consen  218 LIMEYLPGGDMMTLLMRK--DTLTEDWARFYIAETVLAIESIHQ-LGYIHRDIKPDNLLI--------------------  274 (550)
T ss_pred             EEEEecCCccHHHHHHhc--CcCchHHHHHHHHHHHHHHHHHHH-cCcccccCChhheee--------------------
Confidence            699999 99999999987  569999999999999999999999 599999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc----------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----------  149 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~----------  149 (329)
                                                                          +..+++||.|||++....          
T Consensus       275 ----------------------------------------------------D~~GHiKLSDFGLs~gl~~~~~~~~~~~  302 (550)
T KOG0605|consen  275 ----------------------------------------------------DAKGHIKLSDFGLSTGLDKKHRIESYRL  302 (550)
T ss_pred             ----------------------------------------------------cCCCCEeeccccccchhhhhhhhhhhcc
Confidence                                                                445677777777661110          


Q ss_pred             ----------------------------------------cccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHH
Q 020248          150 ----------------------------------------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA  189 (329)
Q Consensus       150 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~  189 (329)
                                                              .-..+.+|||.|+|||++.+.+|+..+|.||||||+|||+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmL  382 (550)
T KOG0605|consen  303 DEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEML  382 (550)
T ss_pred             hhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHH
Confidence                                                    0122348999999999999999999999999999999999


Q ss_pred             hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHH
Q 020248          190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDARE  269 (329)
Q Consensus       190 ~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
                      .|++||.+.      +.......|+..--.        +                            ..+  .....+.+
T Consensus       383 vGyPPF~s~------tp~~T~rkI~nwr~~--------l----------------------------~fP--~~~~~s~e  418 (550)
T KOG0605|consen  383 VGYPPFCSE------TPQETYRKIVNWRET--------L----------------------------KFP--EEVDLSDE  418 (550)
T ss_pred             hCCCCCCCC------CHHHHHHHHHHHhhh--------c----------------------------cCC--CcCcccHH
Confidence            999999987      456666666532111        0                            000  11223578


Q ss_pred             HHHHHhhccCCCCCCCcC---HHHHhcCCCcCCCCCChhhhhcCCCcccccccc
Q 020248          270 FAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGM  320 (329)
Q Consensus       270 ~~dll~~~L~~dP~~R~t---a~ell~hpwf~~~~~~~~~~~~~~~~~~~~~~~  320 (329)
                      +.|||.+||. ||++|+-   +.||.+||||++++|..-.......|-.++...
T Consensus       419 A~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~l~~~~apfvP~v~~~~  471 (550)
T KOG0605|consen  419 AKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDHLREMPAPFVPQVNSEL  471 (550)
T ss_pred             HHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcchhhcCCCCCCCCCCCcc
Confidence            9999999999 9999985   999999999999999887777766666665543

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=6.1e-33  Score=251.46  Aligned_cols=202  Identities=32%  Similarity=0.513  Sum_probs=154.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|.+++.......++...++.++.||+.||.|||++ |++||||||+||++.                    
T Consensus        84 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili~--------------------  142 (288)
T cd07863          84 LVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILVT--------------------  142 (288)
T ss_pred             EEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC--------------------
Confidence            58999977999988876545689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       143 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  170 (288)
T cd07863         143 ----------------------------------------------------SGGQVKLADFGLARIYSCQMALTPVVVT  170 (288)
T ss_pred             ----------------------------------------------------CCCCEEECccCccccccCcccCCCcccc
Confidence                                                                245789999999865442  22334678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc-CCCCccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-GAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~-~~~~~~~~~~  237 (329)
                      ..|+|||++.+..++.++||||+||++|+|++|.+||.+.      ...+.+..+....|......+.. .......+..
T Consensus       171 ~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (288)
T cd07863         171 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN------SEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSP  244 (288)
T ss_pred             ccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC------CHHHHHHHHHHHhCCCChhhCcccccccccccCC
Confidence            8999999999989999999999999999999999999765      46677788888877655433221 1111111110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..         ......       .....+..+.+||.+||++||++|||+.|+++||||
T Consensus       245 ~~---------~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         245 RG---------PRPVQS-------VVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             CC---------CCchHH-------hCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            00         000111       112345678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-33  Score=256.89  Aligned_cols=183  Identities=26%  Similarity=0.360  Sum_probs=149.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  +.++...+..++.|++.||+|||++ |++||||||+||+++                   
T Consensus        78 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~NIli~-------------------  135 (291)
T cd05612          78 MLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLHSK-EIVYRDLKPENILLD-------------------  135 (291)
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEEC-------------------
Confidence            589999 89999999865  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........|++
T Consensus       136 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~gt~  162 (291)
T cd05612         136 -----------------------------------------------------KEGHIKLTDFGFAKKLRDRTWTLCGTP  162 (291)
T ss_pred             -----------------------------------------------------CCCCEEEEecCcchhccCCcccccCCh
Confidence                                                                 245799999999876655555567899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                         
T Consensus       163 ~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~------~~~~~~~i~-------------------------  211 (291)
T cd05612         163 EYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDN------PFGIYEKIL-------------------------  211 (291)
T ss_pred             hhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH-------------------------
Confidence            9999999999889999999999999999999999997652      222222221                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~  306 (329)
                                       .....++...+..+.+||++||+.||.+|++     +.|+++||||+...+....
T Consensus       212 -----------------~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~~~  266 (291)
T cd05612         212 -----------------AGKLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVP  266 (291)
T ss_pred             -----------------hCCcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCCHHHHh
Confidence                             1111233344668899999999999999995     9999999999987765433

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1e-32  Score=256.80  Aligned_cols=209  Identities=29%  Similarity=0.524  Sum_probs=160.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++|+++|++|.+++..   ..++...+..++.||+.||.|||+. ||+||||||+||++.                    
T Consensus        97 ~~~~~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrdikp~Nil~~--------------------  152 (343)
T cd07878          97 LVTNLMGADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYIHSA-GIIHRDLKPSNVAVN--------------------  152 (343)
T ss_pred             EEeecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeecccCChhhEEEC--------------------
Confidence            4688889999988865   3489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........+++.
T Consensus       153 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~t~~  180 (343)
T cd07878         153 ----------------------------------------------------EDCELRILDFGLARQADDEMTGYVATRW  180 (343)
T ss_pred             ----------------------------------------------------CCCCEEEcCCccceecCCCcCCcccccc
Confidence                                                                2457999999999776665566678999


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC--ccccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS--KDYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~  237 (329)
                      |+|||++.+ ..++.++|||||||++|+|++|..||.+.      +....+..+.+..|..+..+.......  ..+...
T Consensus       181 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (343)
T cd07878         181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGN------DYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQS  254 (343)
T ss_pred             ccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhc
Confidence            999999987 46899999999999999999999999765      456778888888888776655322111  111110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      ...      .....+....       ......+.+||.+||++||++|||+.|+++||||.....+.
T Consensus       255 ~~~------~~~~~~~~~~-------~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~~~  308 (343)
T cd07878         255 LPH------MPQQDLKKIF-------RGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHDPE  308 (343)
T ss_pred             ccc------ccchhHHHhc-------cCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCCCc
Confidence            000      0000011111       12345688999999999999999999999999999865544

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=9e-33  Score=261.75  Aligned_cols=217  Identities=23%  Similarity=0.353  Sum_probs=156.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|..++...  ..++...++.++.||+.||.|||++ ||+||||||+||++..                   
T Consensus       160 lv~e~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH~~-~IvHrDiKP~NIll~~-------------------  217 (391)
T PHA03212        160 LILPRYKTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLHEN-RIIHRDIKAENIFINH-------------------  217 (391)
T ss_pred             EEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHhEEEcC-------------------
Confidence            57899988999888765  3589999999999999999999995 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc----cccccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----KQFAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~----~~~~~~~  156 (329)
                                                                           ...++|+|||.+....    .......
T Consensus       218 -----------------------------------------------------~~~vkL~DFG~a~~~~~~~~~~~~~~~  244 (391)
T PHA03212        218 -----------------------------------------------------PGDVCLGDFGAACFPVDINANKYYGWA  244 (391)
T ss_pred             -----------------------------------------------------CCCEEEEeCCccccccccccccccccc
Confidence                                                                 3568999999985432    1223457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCC-CCCCchHHHHHHHHHhCCCcHHHHhcCCC-Cccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ-GFCEDEDHLALMMELIGKMPRKIAIGGAQ-SKDY  234 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~~~~l~~i~~~~g~~p~~~~~~~~~-~~~~  234 (329)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||....+. +..+...++..+...+|..|..+...... ....
T Consensus       245 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  324 (391)
T PHA03212        245 GTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEI  324 (391)
T ss_pred             CccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHH
Confidence            899999999999989999999999999999999999887654322 12244668888999999887654311100 0000


Q ss_pred             c-CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          235 F-DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      + ...... .............        ...+.++.+||.+||++||++||||.|+|+||||....
T Consensus       325 ~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~  383 (391)
T PHA03212        325 YIGLAKKS-SRKPGSRPLWTNL--------YELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIP  383 (391)
T ss_pred             HHHHHhcc-CCCCCCCCCHHHH--------hhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCC
Confidence            0 000000 0000000000000        12356789999999999999999999999999998754

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=5.6e-33  Score=252.03  Aligned_cols=190  Identities=28%  Similarity=0.384  Sum_probs=147.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+.......++...+..++.|++.||+|||++ |++||||||+||++.                   
T Consensus        77 lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nill~-------------------  136 (285)
T cd05631          77 LVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE-RIVYRDLKPENILLD-------------------  136 (285)
T ss_pred             EEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEEC-------------------
Confidence            589999 89999888765445689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       137 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~g  163 (285)
T cd05631         137 -----------------------------------------------------DRGHIRISDLGLAVQIPEGETVRGRVG  163 (285)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCcEEcCCCCeecCCCC
Confidence                                                                 245689999999865432  2334578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||++.+..++.++||||+||++|+|++|..||....      .......+.....                   
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~-------------------  218 (285)
T cd05631         164 TVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK------ERVKREEVDRRVK-------------------  218 (285)
T ss_pred             CCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCC------cchhHHHHHHHhh-------------------
Confidence            999999999999999999999999999999999999997652      1111111111100                   


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~~  307 (329)
                                         ......+...+..+.+|+++||+.||++|+|     ++|+++||||...++..-+.
T Consensus       219 -------------------~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~  274 (285)
T cd05631         219 -------------------EDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEA  274 (285)
T ss_pred             -------------------cccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHHHHh
Confidence                               0011122334668899999999999999997     89999999999987555443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=3.1e-33  Score=258.37  Aligned_cols=183  Identities=26%  Similarity=0.426  Sum_probs=146.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  ..+++..++.++.||+.||+|||+. ||+||||||+||++.                   
T Consensus        72 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-~ivHrDlkp~NIll~-------------------  129 (323)
T cd05571          72 FVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSC-DVVYRDLKLENLMLD-------------------  129 (323)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEEC-------------------
Confidence            589999 89999988765  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       130 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  156 (323)
T cd05571         130 -----------------------------------------------------KDGHIKITDFGLCKEGISDGATMKTFC  156 (323)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCCcccccCCCccccee
Confidence                                                                 24579999999985432   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++||||+||++|+|++|..||...      +.......+.                      
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~------~~~~~~~~~~----------------------  208 (323)
T cd05571         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ------DHEKLFELIL----------------------  208 (323)
T ss_pred             cCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999999999999999999999999999999754      1221111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                          ......+...+..+.+||.+||+.||++|+     ++.++++||||....+....
T Consensus       209 --------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~~~~~~  263 (323)
T cd05571         209 --------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVV  263 (323)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHH
Confidence                                011112334467889999999999999999     89999999999987655443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=3.9e-33  Score=258.41  Aligned_cols=181  Identities=25%  Similarity=0.371  Sum_probs=146.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+...  ..++...++.++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        95 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~NIll~-------------------  152 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLHSK-DIIYRDLKPENLLLD-------------------  152 (329)
T ss_pred             EEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEEC-------------------
Confidence            589999 89999998875  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........|++
T Consensus       153 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~gt~  179 (329)
T PTZ00263        153 -----------------------------------------------------NKGHVKVTDFGFAKKVPDRTFTLCGTP  179 (329)
T ss_pred             -----------------------------------------------------CCCCEEEeeccCceEcCCCcceecCCh
Confidence                                                                 345799999999976665555667899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|||||||++|+|++|..||.+..      .......+.                         
T Consensus       180 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~------~~~~~~~i~-------------------------  228 (329)
T PTZ00263        180 EYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT------PFRIYEKIL-------------------------  228 (329)
T ss_pred             hhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC------HHHHHHHHh-------------------------
Confidence            9999999999999999999999999999999999997541      111111111                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCCh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~  304 (329)
                                       ......+...+..+.+||++||+.||++|++     ++++++||||....+..
T Consensus       229 -----------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~~~~~  281 (329)
T PTZ00263        229 -----------------AGRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWDK  281 (329)
T ss_pred             -----------------cCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCCCHHH
Confidence                             1111122334567889999999999999997     79999999999865553

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=259.50  Aligned_cols=221  Identities=33%  Similarity=0.569  Sum_probs=181.7

Q ss_pred             CcccccchhHHHHHHhh-cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLGDSLLRLIKYS-RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~-~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||.+--||..+++.. ...+|.+..++.++.|+..||..|-. |||+|.||||.|||++..                 
T Consensus       511 lVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~-c~vlHaDIKPDNiLVNE~-----------------  572 (752)
T KOG0670|consen  511 LVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKK-CGVLHADIKPDNILVNES-----------------  572 (752)
T ss_pred             EEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHh-cCeeecccCccceEeccC-----------------
Confidence            68999999999999875 45679999999999999999999998 899999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                            ...++|||||.|..... ..+....+
T Consensus       573 ------------------------------------------------------k~iLKLCDfGSA~~~~eneitPYLVS  598 (752)
T KOG0670|consen  573 ------------------------------------------------------KNILKLCDFGSASFASENEITPYLVS  598 (752)
T ss_pred             ------------------------------------------------------cceeeeccCccccccccccccHHHHH
Confidence                                                                  34689999999966654 33334456


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ..|+|||+++|.+|++..|+||+||+||||.||+.+|++.      .+.+-+..++++-|++|..|+.+..+.+..||..
T Consensus       599 RFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~------TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d  672 (752)
T KOG0670|consen  599 RFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR------TNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQD  672 (752)
T ss_pred             HhccCcceeecCcccCCccceeeceeeEEeeccceecCCC------CcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccc
Confidence            7899999999999999999999999999999999999998      6889999999999999999999999999888876


Q ss_pred             Cchhhhccc---------------cccchhHHHhhhcCCChhh---HHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          239 GDLKRIRRL---------------KFWSLDRLLVDKYRFSETD---AREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       239 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      -++..+...               +..++...+......+.+.   ..+|.+||.+||..||++|+|..++|+||||+.
T Consensus       673 ~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  673 LNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             cceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence            654221100               0112333333333344433   467999999999999999999999999999985

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=5e-33  Score=258.90  Aligned_cols=183  Identities=26%  Similarity=0.350  Sum_probs=149.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||.|||+. ||+||||||+||+++                   
T Consensus       108 lv~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl~-------------------  165 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQSL-NIVYRDLKPENLLLD-------------------  165 (340)
T ss_pred             EEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEEC-------------------
Confidence            589999 899999998763  589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........||+
T Consensus       166 -----------------------------------------------------~~~~ikL~DFG~a~~~~~~~~~~~gt~  192 (340)
T PTZ00426        166 -----------------------------------------------------KDGFIKMTDFGFAKVVDTRTYTLCGTP  192 (340)
T ss_pred             -----------------------------------------------------CCCCEEEecCCCCeecCCCcceecCCh
Confidence                                                                 245799999999976655555667899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|+||+||++|+|++|..||...      +.......+.+                        
T Consensus       193 ~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~------~~~~~~~~i~~------------------------  242 (340)
T PTZ00426        193 EYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN------EPLLIYQKILE------------------------  242 (340)
T ss_pred             hhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC------CHHHHHHHHhc------------------------
Confidence            999999999988999999999999999999999999765      22222222211                        


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                        .....+...+..+.++|++||+.||++|+     |+.|+++||||...++....
T Consensus       243 ------------------~~~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~~  296 (340)
T PTZ00426        243 ------------------GIIYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLL  296 (340)
T ss_pred             ------------------CCCCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHH
Confidence                              11112333456789999999999999995     89999999999988765433

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.5e-32  Score=250.49  Aligned_cols=209  Identities=28%  Similarity=0.494  Sum_probs=158.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.||+.||+|||++ ||+||||||+||++.                    
T Consensus        81 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~dlkp~Nill~--------------------  138 (309)
T cd07872          81 LVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRR-KVLHRDLKPQNLLIN--------------------  138 (309)
T ss_pred             EEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC--------------------
Confidence            589999778888876543 3488999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       139 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  166 (309)
T cd07872         139 ----------------------------------------------------ERGELKLADFGLARAKSVPTKTYSNEVV  166 (309)
T ss_pred             ----------------------------------------------------CCCCEEECccccceecCCCccccccccc
Confidence                                                                245789999999854332   2223456


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||++.+. .++.++||||+||++|+|++|..||.+.      +..+.+..+...+|.++...+........+.+
T Consensus       167 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (309)
T cd07872         167 TLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS------TVEDELHLIFRLLGTPTEETWPGISSNDEFKN  240 (309)
T ss_pred             cccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHhhhcchhhhhh
Confidence            8899999998764 5899999999999999999999999876      46678888999999888776654433222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ....  ..      .......    .....+.++.+||++||++||++|+|+.|+++||||....
T Consensus       241 ~~~~--~~------~~~~~~~----~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         241 YNFP--KY------KPQPLIN----HAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             hhcC--cc------CCCchhh----hccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence            1000  00      0000000    1122456789999999999999999999999999998754

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.3e-32  Score=252.97  Aligned_cols=180  Identities=29%  Similarity=0.463  Sum_probs=144.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        70 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~HrDlkp~Nili~-------------------  127 (312)
T cd05585          70 LVLAFINGGELFHHLQRE--GRFDLSRARFYTAELLCALENLHKF-NVIYRDLKPENILLD-------------------  127 (312)
T ss_pred             EEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHeEEC-------------------
Confidence            589999 99999998765  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       128 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  154 (312)
T cd05585         128 -----------------------------------------------------YQGHIALCDFGLCKLNMKDDDKTNTFC  154 (312)
T ss_pred             -----------------------------------------------------CCCcEEEEECcccccCccCCCcccccc
Confidence                                                                 34579999999985432   1223456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++||||+||++|+|++|..||....      .......                        
T Consensus       155 gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~------~~~~~~~------------------------  204 (312)
T cd05585         155 GTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN------VNEMYRK------------------------  204 (312)
T ss_pred             CCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC------HHHHHHH------------------------
Confidence            8999999999999999999999999999999999999997541      1111111                        


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc---CHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~---ta~ell~hpwf~~~~~~  303 (329)
                                        +.......+...+..+.+||.+||..||++|+   ++.|+++||||...++.
T Consensus       205 ------------------~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~~~~  256 (312)
T cd05585         205 ------------------ILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQLSWK  256 (312)
T ss_pred             ------------------HHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCCCHH
Confidence                              11111223344567889999999999999997   58999999999987543

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.98  E-value=4.4e-32  Score=249.27  Aligned_cols=224  Identities=28%  Similarity=0.406  Sum_probs=155.8

Q ss_pred             CcccccchhHHHHHHhhc-------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~-------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      +||||++++|.+++....       ...++...+..++.||+.||.|||++ |++||||||+||++....          
T Consensus        77 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivH~Dlkp~Nil~~~~~----------  145 (317)
T cd07867          77 LLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----------  145 (317)
T ss_pred             EEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC-CEEcCCCCHHHEEEccCC----------
Confidence            579999889988886431       12478889999999999999999995 999999999999983310          


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  151 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--  151 (329)
                                                                                .....++|+|||.+......  
T Consensus       146 ----------------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~  167 (317)
T cd07867         146 ----------------------------------------------------------PERGRVKIADMGFARLFNSPLK  167 (317)
T ss_pred             ----------------------------------------------------------CCCCcEEEeeccceeccCCCcc
Confidence                                                                      12347899999998654322  


Q ss_pred             ----cccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCC---CCCchHHHHHHHHHhCCCcHH
Q 020248          152 ----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQG---FCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       152 ----~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~~~~l~~i~~~~g~~p~~  223 (329)
                          .....++..|+|||++.+. .++.++||||+||++|+|++|.+||.......   .......+..+...+|.....
T Consensus       168 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (317)
T cd07867         168 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADK  247 (317)
T ss_pred             cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChh
Confidence                2234668899999999874 58999999999999999999999997543110   011345677888888877666


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .+........+........... ..........   ..........+.+||.+||+.||.+|||+.|+|+||||
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         248 DWEDIRKMPEYPTLQKDFRRTT-YANSSLIKYM---EKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hhhhhhhcccchhhhhhhcccc-cCCchhhhhh---hcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            5544433322222111111100 0000011111   01112234578999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.98  E-value=1.5e-32  Score=253.47  Aligned_cols=181  Identities=27%  Similarity=0.460  Sum_probs=144.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        73 iv~Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~~-~ivH~dlkp~NIli~-------------------  130 (320)
T cd05590          73 FVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDK-GIIYRDLKLDNVLLD-------------------  130 (320)
T ss_pred             EEEcCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEEC-------------------
Confidence            589999 89999888765  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (320)
T cd05590         131 -----------------------------------------------------HEGHCKLADFGMCKEGIFNGKTTSTFC  157 (320)
T ss_pred             -----------------------------------------------------CCCcEEEeeCCCCeecCcCCCcccccc
Confidence                                                                 24579999999875432   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+||+||++|+|++|..||...      +.......+..                     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~------~~~~~~~~i~~---------------------  210 (320)
T cd05590         158 GTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE------NEDDLFEAILN---------------------  210 (320)
T ss_pred             cCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC------CHHHHHHHHhc---------------------
Confidence            899999999999889999999999999999999999999765      22222222211                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH------HHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta------~ell~hpwf~~~~~~~  304 (329)
                                           .....+...+..+.+||++||+.||++|+++      .++++||||....+..
T Consensus       211 ---------------------~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~~~  263 (320)
T cd05590         211 ---------------------DEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWEK  263 (320)
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCHHH
Confidence                                 0111122235688999999999999999998      8999999999876644

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.98  E-value=9.6e-33  Score=241.22  Aligned_cols=229  Identities=29%  Similarity=0.420  Sum_probs=168.1

Q ss_pred             CcccccchhHHHHHHhhcC---CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~---~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |++||..-+|+.+++.+..   +.++...++.|+.||+.|++|||++ -|+||||||.|||+..+-              
T Consensus       105 l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N-WvlHRDLKPaNIlvmgdg--------------  169 (438)
T KOG0666|consen  105 LLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN-WVLHRDLKPANILVMGDG--------------  169 (438)
T ss_pred             EEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh-heeeccCCcceEEEeccC--------------
Confidence            5789999999999998743   4589999999999999999999996 899999999999993320              


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----  152 (329)
                                                                            ....+|||+|||+++.+..+.     
T Consensus       170 ------------------------------------------------------perG~VKIaDlGlaR~~~~plkpl~s  195 (438)
T KOG0666|consen  170 ------------------------------------------------------PERGRVKIADLGLARLFNNPLKPLAS  195 (438)
T ss_pred             ------------------------------------------------------CccCeeEeecccHHHHhhcccccccc
Confidence                                                                  224689999999997666432     


Q ss_pred             -ccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC---CCchHHHHHHHHHhCCCcHHHHhc
Q 020248          153 -AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       153 -~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                       ...+.|.-|+|||+++|. .|+.+.|+|++|||+.||++-.++|.+....-.   .-..+++.+|.+++|.+...-|..
T Consensus       196 ~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~  275 (438)
T KOG0666|consen  196 LDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPD  275 (438)
T ss_pred             CCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchh
Confidence             223557889999999987 699999999999999999999999987632111   124789999999999988766554


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ..+--+|...-..+..... ....+-+..    ......+....+|+.+||++||-+|+|+.++|+|+||+.-.-+
T Consensus       276 lkk~Pe~q~~ls~f~~~~~-~n~sL~~~~----~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  276 LKKMPEYQTLLSDFRRHYY-DNVSLHKYY----HKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             hhhCcchHHHHHHhHHhhc-CcchHHHHH----HHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence            4333333211111111000 000011111    1112224458999999999999999999999999999976544

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.5e-32  Score=251.99  Aligned_cols=185  Identities=26%  Similarity=0.503  Sum_probs=159.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||+|+= |++|++++.++. .++.++.++.++.||+.|+.|||+ ..|+||||||+||+|-.                  
T Consensus        94 LiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHq-LHVVHRDLKPENVVFFE------------------  153 (864)
T KOG4717|consen   94 LILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQ-LHVVHRDLKPENVVFFE------------------  153 (864)
T ss_pred             EEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhh-hhhhcccCCcceeEEee------------------
Confidence            467776 789999999875 679999999999999999999999 79999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc--ccccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--NKQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~--~~~~~~~~~  157 (329)
                                                                           +..-|||.|||++-.+  .......+|
T Consensus       154 -----------------------------------------------------KlGlVKLTDFGFSNkf~PG~kL~TsCG  180 (864)
T KOG4717|consen  154 -----------------------------------------------------KLGLVKLTDFGFSNKFQPGKKLTTSCG  180 (864)
T ss_pred             -----------------------------------------------------ecCceEeeeccccccCCCcchhhcccc
Confidence                                                                 2457999999999444  456778899


Q ss_pred             CCCCcchHHhhcCCCC-ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s-~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|-|||+++|-.|. +++||||||||+|.|+.|++||...      ++.+.+.+|+.                     
T Consensus       181 SLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeA------NDSETLTmImD---------------------  233 (864)
T KOG4717|consen  181 SLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEA------NDSETLTMIMD---------------------  233 (864)
T ss_pred             hhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccc------cchhhhhhhhc---------------------
Confidence            9999999999998875 7899999999999999999999987      45555555543                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                           -+|.++...+.+++|||.+||+.||.+|.|.+||..|+|++..+.....
T Consensus       234 ---------------------CKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~~~sT  282 (864)
T KOG4717|consen  234 ---------------------CKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDRGLST  282 (864)
T ss_pred             ---------------------ccccCchhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCCCccc
Confidence                                 3455777889999999999999999999999999999999998766554

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.98  E-value=3.8e-32  Score=255.89  Aligned_cols=208  Identities=31%  Similarity=0.509  Sum_probs=157.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++...  ..++...++.++.||+.||.|||+. |++||||||+||+++                    
T Consensus        81 lv~e~~~~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dlkp~Nili~--------------------  137 (372)
T cd07853          81 VVTELMQSDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYLHSA-GILHRDIKPGNLLVN--------------------  137 (372)
T ss_pred             EEeeccccCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChHHEEEC--------------------
Confidence            58999988898888654  3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~~  156 (329)
                                                                          ....++|+|||.+.....    ......
T Consensus       138 ----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~  165 (372)
T cd07853         138 ----------------------------------------------------SNCVLKICDFGLARVEEPDESKHMTQEV  165 (372)
T ss_pred             ----------------------------------------------------CCCCEEeccccceeecccCccccCCCCC
Confidence                                                                245799999999864432    123345


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC-CCccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA-QSKDY  234 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~  234 (329)
                      +++.|+|||++.+. .++.++||||+||++|+|++|..||.+.      +...++..+.+.+|..+........ ....+
T Consensus       166 ~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~  239 (372)
T cd07853         166 VTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQ------SPIQQLDLITDLLGTPSLEAMRSACEGARAH  239 (372)
T ss_pred             cCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHcCCCCHHHHHHhhHHHHHH
Confidence            68899999999875 4799999999999999999999999876      5677889999999987654432211 00000


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ......       .....    ..........+.++.+||.+||++||++|||+.|+++||||...
T Consensus       240 ~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         240 ILRGPH-------KPPSL----PVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             HHhCCC-------CCCch----HHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence            000000       00000    11112233446789999999999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.98  E-value=2.3e-32  Score=246.62  Aligned_cols=186  Identities=27%  Similarity=0.434  Sum_probs=142.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++.++++++.||+.||++||++ +||||||||.|||+.....               
T Consensus        86 lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~-~IiHRDLKPQNiLLs~~~~---------------  147 (429)
T KOG0595|consen   86 LVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHEN-NIIHRDLKPQNILLSTTAR---------------  147 (429)
T ss_pred             EEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCcceEEeccCCC---------------
Confidence            699999 999999999874  599999999999999999999996 9999999999999954210               


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                         ......+||+|||+|+....  -....+|
T Consensus       148 ---------------------------------------------------~~~~~~LKIADFGfAR~L~~~~~a~tlcG  176 (429)
T KOG0595|consen  148 ---------------------------------------------------NDTSPVLKIADFGFARFLQPGSMAETLCG  176 (429)
T ss_pred             ---------------------------------------------------CCCCceEEecccchhhhCCchhHHHHhhC
Confidence                                                               01115789999999976664  2355689


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|||||++....|..|+|+||+|+|+|++++|++||....      ..+.+..+.+--..+                 
T Consensus       177 SplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t------~~eL~~~~~k~~~~~-----------------  233 (429)
T KOG0595|consen  177 SPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAET------PKELLLYIKKGNEIV-----------------  233 (429)
T ss_pred             CccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccC------HHHHHHHHhcccccc-----------------
Confidence            999999999999999999999999999999999999998763      222222111100000                 


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                            ...+........+|+...|+.+|.+|.+..+-..|++...-
T Consensus       234 ----------------------~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~  274 (429)
T KOG0595|consen  234 ----------------------PVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAAN  274 (429)
T ss_pred             ----------------------CchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhcccC
Confidence                                  00122234456678888888888888888888888877653

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.98  E-value=4.1e-32  Score=245.23  Aligned_cols=234  Identities=25%  Similarity=0.304  Sum_probs=153.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|+.++.+...+.+++..++.++..|+.||+|||- +|||.|||||+|||+..+  =.-...+-++--.. 
T Consensus       154 l~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHm-lGivYRDLKPENILvred--GHIMLsDFDLS~~~-  229 (459)
T KOG0610|consen  154 LVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHM-LGIVYRDLKPENILVRED--GHIMLSDFDLSLRC-  229 (459)
T ss_pred             EEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHh-hceeeccCCcceeEEecC--CcEEeeeccccccC-
Confidence            689999 9999999999998999999999999999999999998 799999999999999432  11111111111000 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccC-CccCCCCCccCCCCCCceEEeecC--------ccccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMG-GIELPKPERCLDGIDMRCKVVDFG--------NACRANK  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Dfg--------~a~~~~~  150 (329)
                       +..+             +..+.........   .....+ ...+..+.-.. .....-+ .|.+        .|.+.+.
T Consensus       230 -~~~P-------------t~~~s~~~~~~~~---~~~~~~~~~s~f~~r~~~-~~~~~~k-~~~~~~~~~p~~~aep~~~  290 (459)
T KOG0610|consen  230 -PVSP-------------TLVKSSSPRSSGS---QPSCRSRQPSCFSPRCLS-SSKKRKK-KDESASRSLPELVAEPTGA  290 (459)
T ss_pred             -CCCC-------------eeeccCCCCCCCC---Ccccccccccccccchhc-ccccccc-ccccccccchhhhcCCCCc
Confidence             0000             0000000000000   000000 00000000000 0000000 2222        1233344


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ...+++||-.|.|||++.|..-+.++|.|+||+++|||+.|..||.+.      ++...+..|+                
T Consensus       291 RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~------~~~~Tl~NIv----------------  348 (459)
T KOG0610|consen  291 RSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGS------NNKETLRNIV----------------  348 (459)
T ss_pred             cccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCC------CchhhHHHHh----------------
Confidence            567789999999999999999999999999999999999999999988      3444444443                


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCCh--hhHHHHHHHHhhccCCCCCCCcC----HHHHhcCCCcCCCCCCh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPT----AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dll~~~L~~dP~~R~t----a~ell~hpwf~~~~~~~  304 (329)
                                                .+...++.  ..+..++|||+++|.+||++|+-    |+||-+||||.+++|..
T Consensus       349 --------------------------~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWaL  402 (459)
T KOG0610|consen  349 --------------------------GQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWAL  402 (459)
T ss_pred             --------------------------cCCCcCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCChhh
Confidence                                      22222222  34678999999999999999998    99999999999999974


Q ss_pred             h
Q 020248          305 D  305 (329)
Q Consensus       305 ~  305 (329)
                      -
T Consensus       403 i  403 (459)
T KOG0610|consen  403 I  403 (459)
T ss_pred             e
Confidence            3

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.6e-32  Score=251.48  Aligned_cols=191  Identities=23%  Similarity=0.347  Sum_probs=148.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  ..+++..++.++.||+.||.|||+. |++||||||+||+++                   
T Consensus        78 lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~-------------------  135 (333)
T cd05600          78 LAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALHEL-GYIHRDLKPENFLID-------------------  135 (333)
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEC-------------------
Confidence            589999 99999999765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........|++
T Consensus       136 -----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~gt~  162 (333)
T cd05600         136 -----------------------------------------------------ASGHIKLTDFGLSKGIVTYANSVVGSP  162 (333)
T ss_pred             -----------------------------------------------------CCCCEEEEeCcCCcccccccCCcccCc
Confidence                                                                 345799999999976655555667899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|||||||++|+|++|..||....      .......+......+               .. .
T Consensus       163 ~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~---------------~~-~  220 (333)
T cd05600         163 DYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST------PNETWENLKYWKETL---------------QR-P  220 (333)
T ss_pred             cccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC------HHHHHHHHHhccccc---------------cC-C
Confidence            9999999999999999999999999999999999997652      222222221110000               00 0


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ..   .               ......+.++.+||.+||..+|++|+|+.|+++||||....+....
T Consensus       221 ~~---~---------------~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~~~~~~~  269 (333)
T cd05600         221 VY---D---------------DPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEVDWNELR  269 (333)
T ss_pred             CC---C---------------ccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCCCHHHHh
Confidence            00   0               0001235678999999999999999999999999999987654433

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.98  E-value=1.4e-32  Score=254.52  Aligned_cols=181  Identities=27%  Similarity=0.440  Sum_probs=144.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+...  ..+++..+..++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        72 lv~Ey~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~NIll~-------------------  129 (328)
T cd05593          72 FVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSG-KIVYRDLKLENLMLD-------------------  129 (328)
T ss_pred             EEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeEEC-------------------
Confidence            589999 89999888765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       130 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  156 (328)
T cd05593         130 -----------------------------------------------------KDGHIKITDFGLCKEGITDAATMKTFC  156 (328)
T ss_pred             -----------------------------------------------------CCCcEEEecCcCCccCCCccccccccc
Confidence                                                                 245799999999854321   223456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                      
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~------~~~~~~~~~----------------------  208 (328)
T cd05593         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELIL----------------------  208 (328)
T ss_pred             CCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCC------HHHHHHHhc----------------------
Confidence            8999999999998899999999999999999999999997541      111111110                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                          .....++...+..+.+||++||+.||++|+     ++.|+++||||...++..
T Consensus       209 --------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~  261 (328)
T cd05593         209 --------------------MEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGVNWQD  261 (328)
T ss_pred             --------------------cCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCCCHHH
Confidence                                011112334467889999999999999997     899999999999876543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.97  E-value=3.2e-32  Score=251.63  Aligned_cols=183  Identities=26%  Similarity=0.399  Sum_probs=145.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        78 lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~Nill~-------------------  135 (324)
T cd05587          78 FVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVMLD-------------------  135 (324)
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEEc-------------------
Confidence            589999 89999988765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       136 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  162 (324)
T cd05587         136 -----------------------------------------------------AEGHIKIADFGMCKENIFGGKTTRTFC  162 (324)
T ss_pred             -----------------------------------------------------CCCCEEEeecCcceecCCCCCceeeec
Confidence                                                                 24579999999874321   2223456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+||+||++|+|++|..||.+.      +....+..+.+                     
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~------~~~~~~~~i~~---------------------  215 (324)
T cd05587         163 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE------DEDELFQSIME---------------------  215 (324)
T ss_pred             CCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC------CHHHHHHHHHc---------------------
Confidence            899999999999999999999999999999999999999765      22222222211                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~~  306 (329)
                                           .....+...+..+.+|+++||..||++|+++     .++++||||...++....
T Consensus       216 ---------------------~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~~~~~~~  269 (324)
T cd05587         216 ---------------------HNVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRIDWEKLE  269 (324)
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCCCHHHHH
Confidence                                 0111223345688999999999999999986     899999999988765443

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.97  E-value=4e-32  Score=250.26  Aligned_cols=181  Identities=29%  Similarity=0.470  Sum_probs=143.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++...  ..++...+..++.||+.||+|||+. ||+||||||+||++.                   
T Consensus        73 lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nil~~-------------------  130 (316)
T cd05620          73 FVMEFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHSK-GIIYRDLKLDNVMLD-------------------  130 (316)
T ss_pred             EEECCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEEC-------------------
Confidence            589999 88999988765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc---ccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~---~~~~~~~~  156 (329)
                                                                           ....++|+|||.+...   ........
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (316)
T cd05620         131 -----------------------------------------------------RDGHIKIADFGMCKENVFGDNRASTFC  157 (316)
T ss_pred             -----------------------------------------------------CCCCEEeCccCCCeecccCCCceeccC
Confidence                                                                 2457999999987532   22334457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++||||+||++|+|++|..||...      +.......+..                     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~------~~~~~~~~~~~---------------------  210 (316)
T cd05620         158 GTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGD------DEDELFESIRV---------------------  210 (316)
T ss_pred             CCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCC------CHHHHHHHHHh---------------------
Confidence            899999999999999999999999999999999999999754      12222211110                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-HHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-~ell~hpwf~~~~~~~  304 (329)
                                           .....+...+..+.+||++||+.||++|+++ +++++||||...++..
T Consensus       211 ---------------------~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~~~~~  258 (316)
T cd05620         211 ---------------------DTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTINWTA  258 (316)
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCCCHHH
Confidence                                 0001122235678899999999999999997 5889999999876553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=1.4e-31  Score=248.21  Aligned_cols=219  Identities=24%  Similarity=0.363  Sum_probs=147.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||++.+|+||||||+||++..                  
T Consensus        80 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~------------------  139 (331)
T cd06649          80 ICMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNS------------------  139 (331)
T ss_pred             EEeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcC------------------
Confidence            589999 899999998753  48999999999999999999998536999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                            ...++|+|||.+..... ......++
T Consensus       140 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~g~  165 (331)
T cd06649         140 ------------------------------------------------------RGEIKLCDFGVSGQLIDSMANSFVGT  165 (331)
T ss_pred             ------------------------------------------------------CCcEEEccCcccccccccccccCCCC
Confidence                                                                  45699999999855433 22345688


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc-C-------CC
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG-G-------AQ  230 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~-~-------~~  230 (329)
                      ..|+|||++.+..++.++|||||||++|+|++|+.||....      . .   .+...++......... +       ..
T Consensus       166 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (331)
T cd06649         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPD------A-K---ELEAIFGRPVVDGEEGEPHSISPRPRP  235 (331)
T ss_pred             cCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------H-H---HHHHHhcccccccccCCccccCccccc
Confidence            99999999999899999999999999999999999997542      1 1   1222333211100000 0       00


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhc-CC-ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKY-RF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ........+.............+.+..... .. ....+.++.+||.+||++||++|||+.||++||||+.....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~~  310 (331)
T cd06649         236 PGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSEVE  310 (331)
T ss_pred             ccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhcccc
Confidence            000000000000000000000011111110 01 12346789999999999999999999999999999875543

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=7.9e-32  Score=255.55  Aligned_cols=218  Identities=23%  Similarity=0.350  Sum_probs=157.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus       163 lv~e~~~~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH~~-givHrDlkp~Nill~--------------------  219 (392)
T PHA03207        163 MVMPKYKCDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLHGR-GIIHRDVKTENIFLD--------------------  219 (392)
T ss_pred             EEehhcCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEc--------------------
Confidence            57999988999988543  4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                          ....++|+|||.+......     ....
T Consensus       220 ----------------------------------------------------~~~~~~l~DfG~a~~~~~~~~~~~~~~~  247 (392)
T PHA03207        220 ----------------------------------------------------EPENAVLGDFGAACKLDAHPDTPQCYGW  247 (392)
T ss_pred             ----------------------------------------------------CCCCEEEccCccccccCccccccccccc
Confidence                                                                2457899999998654422     2234


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||.+....   .....+..+.+.++..|..+......  .+.
T Consensus       248 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~---~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~  322 (392)
T PHA03207        248 SGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVK---SSSSQLRSIIRCMQVHPLEFPQNGST--NLC  322 (392)
T ss_pred             ccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCC---CcHHHHHHHHHHhccCccccCCccch--hHH
Confidence            6899999999999999999999999999999999999999775321   24667788888888766443211100  000


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      .....+....+.. +.....+     .....+..+.+||.+||++||++|||+.|+++||||....+..
T Consensus       323 ~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~~~~  385 (392)
T PHA03207        323 KHFKQYAIVLRPP-YTIPPVI-----RKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEPINL  385 (392)
T ss_pred             HHHHhhcccccCC-ccccchh-----hccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccchhh
Confidence            0000000000000 0000000     0112345788999999999999999999999999998765443

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.97  E-value=2.3e-32  Score=252.26  Aligned_cols=182  Identities=26%  Similarity=0.425  Sum_probs=145.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|...+...  ..+++..+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        73 lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDikp~Nill~-------------------  130 (321)
T cd05591          73 FVMEYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLHRH-GVIYRDLKLDNILLD-------------------  130 (321)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEEC-------------------
Confidence            689999 88999888765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  157 (321)
T cd05591         131 -----------------------------------------------------AEGHCKLADFGMCKEGILNGVTTTTFC  157 (321)
T ss_pred             -----------------------------------------------------CCCCEEEeecccceecccCCccccccc
Confidence                                                                 24579999999885432   1223446


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|+.||...      +....+..+..                     
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~------~~~~~~~~i~~---------------------  210 (321)
T cd05591         158 GTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD------NEDDLFESILH---------------------  210 (321)
T ss_pred             cCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC------CHHHHHHHHHc---------------------
Confidence            889999999999989999999999999999999999999765      22222222211                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-------CHHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-------TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-------ta~ell~hpwf~~~~~~~~  305 (329)
                                           .....+...+.++.+||++||+.||++|+       ++.++++||||...++..-
T Consensus       211 ---------------------~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~~~~~~  265 (321)
T cd05591         211 ---------------------DDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWVLL  265 (321)
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCCCHHHH
Confidence                                 11112223356889999999999999999       9999999999988766543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=1e-32  Score=255.04  Aligned_cols=184  Identities=27%  Similarity=0.421  Sum_probs=145.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|..++...  ..+++..+..++.||+.||.|||+..||+||||||+||++.                   
T Consensus        72 lv~E~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~-------------------  130 (325)
T cd05594          72 FVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLD-------------------  130 (325)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEEC-------------------
Confidence            689999 89999888765  35899999999999999999999723999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  157 (325)
T cd05594         131 -----------------------------------------------------KDGHIKITDFGLCKEGIKDGATMKTFC  157 (325)
T ss_pred             -----------------------------------------------------CCCCEEEecCCCCeecCCCCccccccc
Confidence                                                                 34579999999875422   2223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                      
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~------~~~~~~~i~----------------------  209 (325)
T cd05594         158 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELIL----------------------  209 (325)
T ss_pred             CCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCC------HHHHHHHHh----------------------
Confidence            8999999999999899999999999999999999999997652      111111110                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                          ......+...+..+.+||.+||+.||++|+     ++.++++||||....+....
T Consensus       210 --------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~~~~~~~  264 (325)
T cd05594         210 --------------------MEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGIVWQDVY  264 (325)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCCCHHHHH
Confidence                                011112334467889999999999999997     99999999999987666443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.97  E-value=6.3e-32  Score=250.29  Aligned_cols=189  Identities=26%  Similarity=0.385  Sum_probs=145.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||.|||++ |++||||||+||++.                   
T Consensus        73 lv~e~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nili~-------------------  130 (329)
T cd05588          73 FVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLHER-GIIYRDLKLDNVLLD-------------------  130 (329)
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEEC-------------------
Confidence            689999 89999888765  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc---ccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~---~~~~~~~~  156 (329)
                                                                           ....++|+|||.+...   ........
T Consensus       131 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  157 (329)
T cd05588         131 -----------------------------------------------------AEGHIKLTDYGMCKEGIRPGDTTSTFC  157 (329)
T ss_pred             -----------------------------------------------------CCCCEEECcCccccccccCCCcccccc
Confidence                                                                 2457999999988532   22334457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC--CCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF--CEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      |++.|+|||++.+..++.++|+||+||++|+|++|+.||........  ......+                        
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~------------------------  213 (329)
T cd05588         158 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYL------------------------  213 (329)
T ss_pred             CCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHH------------------------
Confidence            89999999999999999999999999999999999999964321100  0000000                        


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC------HHHHhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT------AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t------a~ell~hpwf~~~~~~~~  305 (329)
                                       .+.+.......+...+..+.+||++||+.||++|+|      +.++++||||....+...
T Consensus       214 -----------------~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~~~~~~  273 (329)
T cd05588         214 -----------------FQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDWDLL  273 (329)
T ss_pred             -----------------HHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCCCHHHH
Confidence                             111112222234455678999999999999999997      789999999988765443

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-32  Score=252.69  Aligned_cols=188  Identities=31%  Similarity=0.474  Sum_probs=151.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||+| |+.|++.+...   .+++..+..++.|++.++.|||+ .||+|||+||+|+++....                
T Consensus       113 lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~-~gvvHrDlKpEN~L~~~~~----------------  172 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHS-LGVVHRDLKPENLLLASKD----------------  172 (382)
T ss_pred             EEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHh-CCceeccCCHHHeeecccc----------------
Confidence            689999 99999999987   28999999999999999999999 5999999999999994421                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++++|||.+.....  .....+|
T Consensus       173 ----------------------------------------------------~~~~~ik~~DFGla~~~~~~~~~~~~~G  200 (382)
T KOG0032|consen  173 ----------------------------------------------------EGSGRIKLIDFGLAKFIKPGERLHTIVG  200 (382)
T ss_pred             ----------------------------------------------------CCCCcEEEeeCCCceEccCCceEeeecC
Confidence                                                                1124799999999966654  5567799


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |++|+|||++.+.+|+..+||||+|+++|.|+.|..||.+..      .......+.  .|.        +.....    
T Consensus       201 tp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~------~~~~~~~i~--~~~--------~~f~~~----  260 (382)
T KOG0032|consen  201 TPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGET------EFEIFLAIL--RGD--------FDFTSE----  260 (382)
T ss_pred             CccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCC------hhHHHHHHH--cCC--------CCCCCC----
Confidence            999999999999999999999999999999999999998763      222222111  111        111111    


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                              .....+..+.+|+++||..||.+|+|+.++|+|||+.......
T Consensus       261 ------------------------~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~~~~~  303 (382)
T KOG0032|consen  261 ------------------------PWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSIGEAT  303 (382)
T ss_pred             ------------------------CccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCCcccc
Confidence                                    1223367899999999999999999999999999999864333

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.97  E-value=5.4e-32  Score=249.40  Aligned_cols=182  Identities=29%  Similarity=0.458  Sum_probs=144.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.||+.||.|||+. ||+||||||+||+++                   
T Consensus        73 lv~e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dlkp~Nill~-------------------  130 (316)
T cd05592          73 FVMEYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKK-GIIYRDLKLDNVLLD-------------------  130 (316)
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHeEEC-------------------
Confidence            589999 89999988765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~  157 (316)
T cd05592         131 -----------------------------------------------------KDGHIKIADFGMCKENMNGEGKASTFC  157 (316)
T ss_pred             -----------------------------------------------------CCCCEEEccCcCCeECCCCCCcccccc
Confidence                                                                 24579999999985432   2233457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||.+.      +.......+..   .                 
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~------~~~~~~~~i~~---~-----------------  211 (316)
T cd05592         158 GTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE------DEDELFDSILN---D-----------------  211 (316)
T ss_pred             CCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHc---C-----------------
Confidence            899999999999989999999999999999999999999765      22222222210   0                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-~ell~hpwf~~~~~~~~  305 (329)
                                            ....+...+..+.+||.+||..||++|+++ .++++||||....+...
T Consensus       212 ----------------------~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~~~~~~  259 (316)
T cd05592         212 ----------------------RPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGIDWERL  259 (316)
T ss_pred             ----------------------CCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCCCHHHH
Confidence                                  011223345678899999999999999986 58889999998766443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.97  E-value=1.1e-31  Score=243.02  Aligned_cols=187  Identities=26%  Similarity=0.366  Sum_probs=143.8

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||| |++|...+...  ....+++..+..++.||+.||.|||++ ||+||||||+||+++                 
T Consensus        70 lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~-----------------  131 (280)
T cd05608          70 LVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR-RIIYRDLKPENVLLD-----------------  131 (280)
T ss_pred             EEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-----------------
Confidence            589999 89998887542  224589999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                             ....++|+|||.+.....   ....
T Consensus       132 -------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~  156 (280)
T cd05608         132 -------------------------------------------------------NDGNVRISDLGLAVELKDGQSKTKG  156 (280)
T ss_pred             -------------------------------------------------------CCCCEEEeeCccceecCCCCccccc
Confidence                                                                   245689999999855432   1223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..|++.|+|||.+.+..++.++|+||+||++|+|++|..||.....      ......+..                   
T Consensus       157 ~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~------~~~~~~~~~-------------------  211 (280)
T cd05608         157 YAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGE------KVENKELKQ-------------------  211 (280)
T ss_pred             cCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCc------chhHHHHHH-------------------
Confidence            4678899999999999999999999999999999999999975421      000000000                   


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                         .+.......+...+..+.+|+.+||+.||++|+     |++++++||||+...+..
T Consensus       212 -------------------~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~~~~~  267 (280)
T cd05608         212 -------------------RILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQ  267 (280)
T ss_pred             -------------------hhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcCCHhH
Confidence                               000011112333467899999999999999999     889999999999876554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.97  E-value=8e-32  Score=249.40  Aligned_cols=189  Identities=25%  Similarity=0.356  Sum_probs=146.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|...+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++..                  
T Consensus        73 lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nili~~------------------  131 (327)
T cd05617          73 LVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLHER-GIIYRDLKLDNVLLDA------------------  131 (327)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEeC------------------
Confidence            589999 89999888765  3599999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                            ...++|+|||.+....   .......
T Consensus       132 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (327)
T cd05617         132 ------------------------------------------------------DGHIKLTDYGMCKEGLGPGDTTSTFC  157 (327)
T ss_pred             ------------------------------------------------------CCCEEEeccccceeccCCCCceeccc
Confidence                                                                  4579999999885422   2334457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+|||||++|+|++|..||..............+..                        
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~------------------------  213 (327)
T cd05617         158 GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQ------------------------  213 (327)
T ss_pred             CCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHH------------------------
Confidence            89999999999999999999999999999999999999965422111111111111                        


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC------HHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT------AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t------a~ell~hpwf~~~~~~~~  305 (329)
                                       .+.......+...+..+.++|++||..||++|++      +.++++||||...++..-
T Consensus       214 -----------------~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~~~~~~  271 (327)
T cd05617         214 -----------------VILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSIDWDLL  271 (327)
T ss_pred             -----------------HHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCCCHHHH
Confidence                             1111122233444677899999999999999998      569999999998876543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.97  E-value=5.4e-32  Score=250.00  Aligned_cols=183  Identities=25%  Similarity=0.396  Sum_probs=146.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+...  ..+++..+..++.||+.||+|||+. ||+||||||+||++.                   
T Consensus        78 lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill~-------------------  135 (323)
T cd05616          78 FVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVMLD-------------------  135 (323)
T ss_pred             EEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEecCCCHHHeEEC-------------------
Confidence            589999 89999888765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       136 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  162 (323)
T cd05616         136 -----------------------------------------------------SEGHIKIADFGMCKENMWDGVTTKTFC  162 (323)
T ss_pred             -----------------------------------------------------CCCcEEEccCCCceecCCCCCccccCC
Confidence                                                                 34579999999985432   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+|||||++|+|++|..||...      +.......+.+                     
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~------~~~~~~~~i~~---------------------  215 (323)
T cd05616         163 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE------DEDELFQSIME---------------------  215 (323)
T ss_pred             CChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC------CHHHHHHHHHh---------------------
Confidence            899999999999999999999999999999999999999765      22223222221                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChhh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~~  306 (329)
                                           .....+...+.++.+|+.+||+.||++|++.     .++++||||...++....
T Consensus       216 ---------------------~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~~~~~~~  269 (323)
T cd05616         216 ---------------------HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLE  269 (323)
T ss_pred             ---------------------CCCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCCCHHHHH
Confidence                                 1111233346688999999999999999984     899999999988765443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=5.9e-32  Score=252.07  Aligned_cols=187  Identities=25%  Similarity=0.407  Sum_probs=146.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...++.++.||+.||+|||+. |++||||||+||+++                   
T Consensus        78 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-giiH~Dlkp~NIll~-------------------  135 (350)
T cd05573          78 LVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVHKL-GFIHRDIKPDNILID-------------------  135 (350)
T ss_pred             EEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEEC-------------------
Confidence            589999 89999999876  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       136 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  162 (350)
T cd05573         136 -----------------------------------------------------ADGHIKLADFGLCKKMNKAKDREYYLN  162 (350)
T ss_pred             -----------------------------------------------------CCCCEEeecCCCCccCcccCccccccc
Confidence                                                                 3457899999988554322        


Q ss_pred             ------------------------cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCch
Q 020248          152 ------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE  207 (329)
Q Consensus       152 ------------------------~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~  207 (329)
                                              .....|++.|+|||++.+..++.++|||||||++|+|++|..||....      ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~------~~  236 (350)
T cd05573         163 DSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT------LQ  236 (350)
T ss_pred             ccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC------HH
Confidence                                    223467899999999999999999999999999999999999997652      22


Q ss_pred             HHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC
Q 020248          208 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  287 (329)
Q Consensus       208 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t  287 (329)
                      .....+......+                                      ..+.....+..+.+||.+||. ||++|++
T Consensus       237 ~~~~~i~~~~~~~--------------------------------------~~p~~~~~~~~~~~li~~ll~-dp~~R~~  277 (350)
T cd05573         237 ETYNKIINWKESL--------------------------------------RFPPDPPVSPEAIDLICRLLC-DPEDRLG  277 (350)
T ss_pred             HHHHHHhccCCcc--------------------------------------cCCCCCCCCHHHHHHHHHHcc-ChhhcCC
Confidence            2222222100000                                      000011136789999999998 9999999


Q ss_pred             -HHHHhcCCCcCCCCCChhhh
Q 020248          288 -AQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       288 -a~ell~hpwf~~~~~~~~~~  307 (329)
                       +.|+++||||....+.....
T Consensus       278 s~~~ll~hp~~~~~~~~~~~~  298 (350)
T cd05573         278 SFEEIKSHPFFKGIDWENLRE  298 (350)
T ss_pred             CHHHHhcCCCcCCCCHHHHhh
Confidence             99999999999987765553

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=6.7e-32  Score=250.20  Aligned_cols=185  Identities=27%  Similarity=0.379  Sum_probs=142.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        82 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivHrDlkp~Nili~-------------------  139 (332)
T cd05614          82 LILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLHKL-GIVYRDIKLENILLD-------------------  139 (332)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHeEEC-------------------
Confidence            589999 88999998765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||++.....    .....
T Consensus       140 -----------------------------------------------------~~~~~kl~DfG~~~~~~~~~~~~~~~~  166 (332)
T cd05614         140 -----------------------------------------------------SEGHVVLTDFGLSKEFLSEEKERTYSF  166 (332)
T ss_pred             -----------------------------------------------------CCCCEEEeeCcCCccccccCCCccccc
Confidence                                                                 245799999999854321    22335


Q ss_pred             CCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .|++.|+|||++.+. .++.++|||||||++|+|++|..||......   .....   +..                   
T Consensus       167 ~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~---~~~~~---~~~-------------------  221 (332)
T cd05614         167 CGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGER---NTQSE---VSR-------------------  221 (332)
T ss_pred             cCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCC---CCHHH---HHH-------------------
Confidence            689999999999875 4789999999999999999999999654210   00111   100                   


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                         .+.......+...+..+.+||.+||+.||++|+     ++.++++||||....+..
T Consensus       222 -------------------~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~~  277 (332)
T cd05614         222 -------------------RILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLDWEA  277 (332)
T ss_pred             -------------------HHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCCCHHH
Confidence                               000111112334467889999999999999999     788999999999865443

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-32  Score=260.82  Aligned_cols=181  Identities=27%  Similarity=0.464  Sum_probs=152.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |+++..++..   +.|++..++.++.-|+.||.|||++ |||+||||.+|||+                    
T Consensus       446 fvmey~~Ggdm~~~~~~---~~F~e~rarfyaAev~l~L~fLH~~-~IIYRDlKLdNiLL--------------------  501 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHHIHT---DVFSEPRARFYAAEVVLGLQFLHEN-GIIYRDLKLDNLLL--------------------  501 (694)
T ss_pred             EEEEecCCCcEEEEEec---ccccHHHHHHHHHHHHHHHHHHHhc-CceeeecchhheEE--------------------
Confidence            589999 8884433332   4599999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc---cccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR---ANKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~---~~~~~~~~~  156 (329)
                                                                          +.++.+||+|||++..   ....+.+.+
T Consensus       502 ----------------------------------------------------D~eGh~kiADFGlcKe~m~~g~~TsTfC  529 (694)
T KOG0694|consen  502 ----------------------------------------------------DTEGHVKIADFGLCKEGMGQGDRTSTFC  529 (694)
T ss_pred             ----------------------------------------------------cccCcEEecccccccccCCCCCcccccc
Confidence                                                                5578999999999843   335778899


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+..+|.|||||++|||+.|..||.+.      ++.++..                         
T Consensus       530 GTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd------dEee~Fd-------------------------  578 (694)
T KOG0694|consen  530 GTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD------DEEEVFD-------------------------  578 (694)
T ss_pred             CChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC------CHHHHHH-------------------------
Confidence            999999999999999999999999999999999999999976      3333333                         


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~  305 (329)
                                       .++......|...+.+++++|+++|+.+|++|+-     +.+|.+||||+.++|..=
T Consensus       579 -----------------sI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L  635 (694)
T KOG0694|consen  579 -----------------SIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDDL  635 (694)
T ss_pred             -----------------HHhcCCCCCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHHH
Confidence                             3333444456677899999999999999999985     578999999999988643

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=3.2e-32  Score=251.68  Aligned_cols=181  Identities=26%  Similarity=0.437  Sum_probs=144.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|..++...  ..+++..++.++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        72 lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-------------------  129 (323)
T cd05595          72 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLD-------------------  129 (323)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEEc-------------------
Confidence            589999 89999888765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||++.....   ......
T Consensus       130 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  156 (323)
T cd05595         130 -----------------------------------------------------KDGHIKITDFGLCKEGISDGATMKTFC  156 (323)
T ss_pred             -----------------------------------------------------CCCCEEecccHHhccccCCCCcccccc
Confidence                                                                 245799999998754221   223356


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                      
T Consensus       157 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~~~----------------------  208 (323)
T cd05595         157 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD------HERLFELIL----------------------  208 (323)
T ss_pred             CCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHh----------------------
Confidence            8999999999998899999999999999999999999997542      121111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                          ......+...+..+.+||.+||+.||++|+     ++.++++||||....+..
T Consensus       209 --------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~~~~  261 (323)
T cd05595         209 --------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQD  261 (323)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCCHHH
Confidence                                111112334467889999999999999998     899999999999876543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.97  E-value=8.5e-32  Score=248.10  Aligned_cols=182  Identities=30%  Similarity=0.457  Sum_probs=144.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.|++.||.|||++ ||+||||||+||++.                   
T Consensus        73 lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~~-~ivHrdikp~Nil~~-------------------  130 (316)
T cd05619          73 FVMEYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHSK-GIVYRDLKLDNILLD-------------------  130 (316)
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeCCCCHHHEEEC-------------------
Confidence            589999 89999998764  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (316)
T cd05619         131 -----------------------------------------------------TDGHIKIADFGMCKENMLGDAKTCTFC  157 (316)
T ss_pred             -----------------------------------------------------CCCCEEEccCCcceECCCCCCceeeec
Confidence                                                                 24579999999885421   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+..|+|||++.+..++.++|+||+||++|+|++|..||...      +.......+. ..                   
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~------~~~~~~~~i~-~~-------------------  211 (316)
T cd05619         158 GTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGH------DEEELFQSIR-MD-------------------  211 (316)
T ss_pred             CCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCC------CHHHHHHHHH-hC-------------------
Confidence            889999999999989999999999999999999999999764      2222221111 00                   


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH-HHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~-ell~hpwf~~~~~~~~  305 (329)
                                            ....+...+..+.+|+.+||+.||++|+++. ++++||||...++...
T Consensus       212 ----------------------~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~~~~~~  259 (316)
T cd05619         212 ----------------------NPCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREIDWSAL  259 (316)
T ss_pred             ----------------------CCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCCCHHHH
Confidence                                  0001122356788999999999999999996 8999999999876544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.97  E-value=9e-32  Score=249.32  Aligned_cols=190  Identities=25%  Similarity=0.382  Sum_probs=145.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|...+...  ..++...++.++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        73 lv~E~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dikp~Nili~-------------------  130 (329)
T cd05618          73 FVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLLD-------------------  130 (329)
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEC-------------------
Confidence            589999 89998887765  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (329)
T cd05618         131 -----------------------------------------------------SEGHIKLTDYGMCKEGLRPGDTTSTFC  157 (329)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCccccccCCCCcccccc
Confidence                                                                 34579999999885422   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+..|+|||++.+..++.++|+|||||++|+|++|..||........... .....+                       
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~-~~~~~~-----------------------  213 (329)
T cd05618         158 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQ-NTEDYL-----------------------  213 (329)
T ss_pred             CCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCccc-ccHHHH-----------------------
Confidence            89999999999999999999999999999999999999964321110000 000000                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC------HHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT------AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t------a~ell~hpwf~~~~~~~  304 (329)
                                     .+.+.......+...+..+.+||.+||+.||++|+|      ++++++||||...++..
T Consensus       214 ---------------~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~~~~~  272 (329)
T cd05618         214 ---------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDL  272 (329)
T ss_pred             ---------------HHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCCCHHH
Confidence                           111112222344455678899999999999999998      47999999999876643

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.97  E-value=1.8e-31  Score=249.43  Aligned_cols=210  Identities=31%  Similarity=0.571  Sum_probs=159.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+.+...    ++...+..++.|++.||+|||+. |++||||||+||++.                    
T Consensus        98 lv~e~~~~~l~~~~~~~----l~~~~~~~~~~ql~~aL~~LH~~-gi~H~dlkp~Nil~~--------------------  152 (353)
T cd07850          98 LVMELMDANLCQVIQMD----LDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  152 (353)
T ss_pred             EEEeccCCCHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEC--------------------
Confidence            58999988998887653    88999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc--ccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~  158 (329)
                                                                          ....++|+|||.+.......  ....++
T Consensus       153 ----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~  180 (353)
T cd07850         153 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  180 (353)
T ss_pred             ----------------------------------------------------CCCCEEEccCccceeCCCCCCCCCCccc
Confidence                                                                34579999999996654322  234568


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc-cccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK-DYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~-~~~~~  237 (329)
                      ..|+|||.+.+..++.++|+|||||++|+|++|..||...      +....+..+...+|.++.++........ .+.+.
T Consensus       181 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (353)
T cd07850         181 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGT------DHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVEN  254 (353)
T ss_pred             ccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhc
Confidence            8999999999999999999999999999999999999866      5667788888999998887765543222 22211


Q ss_pred             cCchhhhccccccchhHHHhhh-c-----CCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDK-Y-----RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      ......      ..+.+..... .     ......+..+.+||.+||++||++|||+.|+|+||||..
T Consensus       255 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         255 RPKYAG------YSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             CCCCCC------cchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            111100      0011111000 0     012234678899999999999999999999999998873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-31  Score=247.20  Aligned_cols=174  Identities=28%  Similarity=0.429  Sum_probs=142.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC-ccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG-IIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g-iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||| +++|.+++.....+.++...+..++.||+.||.|||++ + |||||||++|||+..                 
T Consensus       117 iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~-~~iIHrDLK~~NiLv~~-----------------  178 (362)
T KOG0192|consen  117 IVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE-GPIIHRDLKSDNILVDL-----------------  178 (362)
T ss_pred             EEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCeeecccChhhEEEcC-----------------
Confidence            699999 99999999885446699999999999999999999995 9 999999999999933                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCC-CceEEeecCccccccc---cccc
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGID-MRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                             . ..+||+|||.+.....   ..+.
T Consensus       179 -------------------------------------------------------~~~~~KI~DFGlsr~~~~~~~~~~~  203 (362)
T KOG0192|consen  179 -------------------------------------------------------KGKTLKIADFGLSREKVISKTSMTS  203 (362)
T ss_pred             -------------------------------------------------------CCCEEEECCCccceeeccccccccC
Confidence                                                                   3 3899999999965553   3344


Q ss_pred             CCCCCCCcchHHhh--cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVIL--RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~--~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..||+.|||||++.  ..+|+.++||||||+++|||+||..||.+..      .......++ ..+.             
T Consensus       204 ~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~------~~~~~~~v~-~~~~-------------  263 (362)
T KOG0192|consen  204 VAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLA------PVQVASAVV-VGGL-------------  263 (362)
T ss_pred             CCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCC------HHHHHHHHH-hcCC-------------
Confidence            68899999999999  5689999999999999999999999998872      322222221 1111             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                +...+..++..+..||.+||..||++||++.|++.
T Consensus       264 --------------------------Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  264 --------------------------RPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             --------------------------CCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHH
Confidence                                      11234456889999999999999999999999865

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.97  E-value=6.5e-32  Score=249.03  Aligned_cols=182  Identities=27%  Similarity=0.439  Sum_probs=145.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+...  ..+++..+..++.||+.||.|||+. |++||||||+||+++                   
T Consensus        73 lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill~-------------------  130 (318)
T cd05570          73 FVMEYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHER-GIIYRDLKLDNVLLD-------------------  130 (318)
T ss_pred             EEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEccCCCHHHeEEC-------------------
Confidence            589999 89999888765  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||++....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (318)
T cd05570         131 -----------------------------------------------------SEGHIKIADFGMCKEGILGGVTTSTFC  157 (318)
T ss_pred             -----------------------------------------------------CCCcEEecccCCCeecCcCCCccccee
Confidence                                                                 34579999999884322   1223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+..|+|||++.+..++.++|+||+||++|+|++|..||....      .......+..                     
T Consensus       158 g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~------~~~~~~~i~~---------------------  210 (318)
T cd05570         158 GTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD------EDELFQSILE---------------------  210 (318)
T ss_pred             cCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC------HHHHHHHHHc---------------------
Confidence            7899999999999999999999999999999999999997541      2222221110                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~  305 (329)
                                           .....+...+..+.+||++||+.||.+|||+     .++++||||....+...
T Consensus       211 ---------------------~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~~~~~~  263 (318)
T cd05570         211 ---------------------DEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKL  263 (318)
T ss_pred             ---------------------CCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCCCHHHH
Confidence                                 0111223345688999999999999999999     99999999998876543

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=2.1e-31  Score=250.00  Aligned_cols=187  Identities=21%  Similarity=0.370  Sum_probs=141.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.|++.||+|||++ ||+||||||+||++.                   
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~-givHrDlKp~NILi~-------------------  135 (363)
T cd05628          78 LIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQL-GFIHRDIKPDNLLLD-------------------  135 (363)
T ss_pred             EEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEEC-------------------
Confidence            689999 89999999865  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       136 -----------------------------------------------------~~~~vkL~DFGla~~~~~~~~~~~~~~  162 (363)
T cd05628         136 -----------------------------------------------------SKGHVKLSDFGLCTGLKKAHRTEFYRN  162 (363)
T ss_pred             -----------------------------------------------------CCCCEEEeeccCccccccccccccccc
Confidence                                                                 2457899999987533210        


Q ss_pred             ------------------------------cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCC
Q 020248          152 ------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ  201 (329)
Q Consensus       152 ------------------------------~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~  201 (329)
                                                    ....+||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.   
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~---  239 (363)
T cd05628         163 LNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE---  239 (363)
T ss_pred             ccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCC---
Confidence                                          12347899999999999999999999999999999999999999765   


Q ss_pred             CCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCC
Q 020248          202 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  281 (329)
Q Consensus       202 ~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d  281 (329)
                         ........+......+.                                      .+-....+..+.+||.+|+. +
T Consensus       240 ---~~~~~~~~i~~~~~~~~--------------------------------------~p~~~~~s~~~~~li~~l~~-~  277 (363)
T cd05628         240 ---TPQETYKKVMNWKETLI--------------------------------------FPPEVPISEKAKDLILRFCC-E  277 (363)
T ss_pred             ---CHHHHHHHHHcCcCccc--------------------------------------CCCcCCCCHHHHHHHHHHcC-C
Confidence               22223232221100000                                      00001134678889988775 4


Q ss_pred             CCC---CcCHHHHhcCCCcCCCCCChhhh
Q 020248          282 PEK---RPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       282 P~~---R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      |++   ||++.||++||||.+.++..-..
T Consensus       278 ~~~r~~r~~~~ei~~hp~f~~~~~~~~~~  306 (363)
T cd05628         278 WEHRIGAPGVEEIKTNPFFEGVDWEHIRE  306 (363)
T ss_pred             hhhcCCCCCHHHHhCCCCCCCCCHHHHHh
Confidence            554   57999999999999987766533

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.9e-31  Score=240.80  Aligned_cols=189  Identities=29%  Similarity=0.407  Sum_probs=147.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.......++...+..++.|++.||.|||+. |++|+||||+||+++                   
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~-------------------  136 (285)
T cd05605          77 LVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE-RIVYRDLKPENILLD-------------------  136 (285)
T ss_pred             EEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC-CcEecCCCHHHEEEC-------------------
Confidence            589999 89999888765445689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       137 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  163 (285)
T cd05605         137 -----------------------------------------------------DYGHIRISDLGLAVEIPEGETIRGRVG  163 (285)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCceecCCCCccccccC
Confidence                                                                 245799999999865432  2234577


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|+||+||++|++++|..||.+..      .......+...+..                  
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~------~~~~~~~~~~~~~~------------------  219 (285)
T cd05605         164 TVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRK------EKVKREEVERRVKE------------------  219 (285)
T ss_pred             CCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCc------hhhHHHHHHHHhhh------------------
Confidence            899999999998889999999999999999999999997652      11111111111100                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                          .....+...+..+.+||.+||..||++|+     +++++++||||...++....
T Consensus       220 --------------------~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (285)
T cd05605         220 --------------------DQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLE  273 (285)
T ss_pred             --------------------cccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCCCHHHHh
Confidence                                01112233466789999999999999999     99999999999987665443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.97  E-value=4.1e-31  Score=241.45  Aligned_cols=209  Identities=27%  Similarity=0.511  Sum_probs=155.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.||+.||.|||+. |++|+||||+||++.                    
T Consensus        81 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~-~i~H~dlkp~Nil~~--------------------  138 (301)
T cd07873          81 LVFEYLDKDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHRR-KVLHRDLKPQNLLIN--------------------  138 (301)
T ss_pred             EEEeccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHHHEEEC--------------------
Confidence            589999779998887643 4588999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       139 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  166 (301)
T cd07873         139 ----------------------------------------------------ERGELKLADFGLARAKSIPTKTYSNEVV  166 (301)
T ss_pred             ----------------------------------------------------CCCcEEECcCcchhccCCCCCcccccce
Confidence                                                                245789999999854432   1223356


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+. .++.++|||||||++|+|++|..||...      +....+..+...++.++...+........+..
T Consensus       167 ~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (301)
T cd07873         167 TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGS------TVEEQLHFIFRILGTPTEETWPGILSNEEFKS  240 (301)
T ss_pred             eecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCChhhchhhhccccccc
Confidence            7899999998764 5789999999999999999999999865      45667788888888877666543322221111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ...  ....       .....   ......+..+.+||.+||++||.+|||++|+++||||....
T Consensus       241 ~~~--~~~~-------~~~~~---~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~  293 (301)
T cd07873         241 YNY--PKYR-------ADCLH---NHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLG  293 (301)
T ss_pred             ccc--Cccc-------cccHH---hhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            000  0000       00000   01223456789999999999999999999999999998754

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.97  E-value=9.8e-32  Score=248.39  Aligned_cols=180  Identities=26%  Similarity=0.425  Sum_probs=143.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|...+..   ..+++..+..++.||+.||+|||+. |++||||||+||++.                   
T Consensus        79 lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrdlkp~Nill~-------------------  135 (324)
T cd05589          79 FVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHEN-KIVYRDLKLDNLLLD-------------------  135 (324)
T ss_pred             EEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecCCCHHHeEEC-------------------
Confidence            589999 8899888765   3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       136 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  162 (324)
T cd05589         136 -----------------------------------------------------TEGFVKIADFGLCKEGMGFGDRTSTFC  162 (324)
T ss_pred             -----------------------------------------------------CCCcEEeCcccCCccCCCCCCcccccc
Confidence                                                                 34579999999875422   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+|||||++|+|++|..||.+.      +.......+.                      
T Consensus       163 g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~------~~~~~~~~i~----------------------  214 (324)
T cd05589         163 GTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD------DEEEVFDSIV----------------------  214 (324)
T ss_pred             cCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999989999999999999999999999999765      2222222221                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                          ......+...+..+.+||++||+.||.+||     ++.++++||||....+..
T Consensus       215 --------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~~~~~  267 (324)
T cd05589         215 --------------------NDEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDD  267 (324)
T ss_pred             --------------------hCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCCCHHH
Confidence                                111112333467789999999999999999     799999999999876544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.1e-31  Score=251.47  Aligned_cols=215  Identities=23%  Similarity=0.297  Sum_probs=148.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||++.++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus       134 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill~--------------------  191 (357)
T PHA03209        134 MVLPHYSSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQ-RIIHRDVKTENIFIN--------------------  191 (357)
T ss_pred             EEEEccCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC--------------------
Confidence            588999888998887543 4689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~~  158 (329)
                                                                          ....++|+|||.+....  .......|+
T Consensus       192 ----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt  219 (357)
T PHA03209        192 ----------------------------------------------------DVDQVCIGDLGAAQFPVVAPAFLGLAGT  219 (357)
T ss_pred             ----------------------------------------------------CCCCEEEecCccccccccCccccccccc
Confidence                                                                24568999999985432  223345688


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC----CCchHHHHHHHHHhCCCcHHHHhc--CCCCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF----CEDEDHLALMMELIGKMPRKIAIG--GAQSK  232 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~----~~~~~~l~~i~~~~g~~p~~~~~~--~~~~~  232 (329)
                      ..|+|||++.+..++.++|||||||++|+|+++..++........    .....++..+...+|..|..+...  .....
T Consensus       220 ~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  299 (357)
T PHA03209        220 VETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVR  299 (357)
T ss_pred             ccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHH
Confidence            999999999999999999999999999999985544433221110    112445666667777666544311  00001


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      .+.+...    ..+.... ....+.     ....+..+.+||++||++||++||||.|+|+||||+.
T Consensus       300 ~~~~~~~----~~~~~~~-~~~~~~-----~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        300 GFIEYAS----LERQPYT-RYPCFQ-----RVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHhhcc----cCCCccc-ccHHHh-----ccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            1110000    0000000 000000     0122456778999999999999999999999999985

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=2.1e-31  Score=241.80  Aligned_cols=189  Identities=29%  Similarity=0.408  Sum_probs=145.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||.|||+. |++||||||+||+++                   
T Consensus        77 lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iiH~dikp~Nil~~-------------------  136 (285)
T cd05630          77 LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE-RIVYRDLKPENILLD-------------------  136 (285)
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHEEEC-------------------
Confidence            589999 89999988765445689999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       137 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~g  163 (285)
T cd05630         137 -----------------------------------------------------DHGHIRISDLGLAVHVPEGQTIKGRVG  163 (285)
T ss_pred             -----------------------------------------------------CCCCEEEeeccceeecCCCccccCCCC
Confidence                                                                 245689999999865432  2233578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||....      +..............                 
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~------~~~~~~~~~~~~~~~-----------------  220 (285)
T cd05630         164 TVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRK------KKIKREEVERLVKEV-----------------  220 (285)
T ss_pred             CccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC------ccchHHHHHhhhhhh-----------------
Confidence            899999999999899999999999999999999999997542      100000010000000                 


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~  306 (329)
                                           ....+...+..+.+|+++||++||++|+|     +.|+++||||+..++...+
T Consensus       221 ---------------------~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~~~~~~~~  273 (285)
T cd05630         221 ---------------------QEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQINFKRLE  273 (285)
T ss_pred             ---------------------hhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhccCHHHHh
Confidence                                 00112334567899999999999999999     9999999999987665443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.97  E-value=9.3e-32  Score=248.46  Aligned_cols=181  Identities=27%  Similarity=0.354  Sum_probs=143.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++...  ..+++..++.++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        73 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-givH~dikp~NIll~-------------------  130 (323)
T cd05575          73 FVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSL-NIIYRDLKPENILLD-------------------  130 (323)
T ss_pred             EEEcCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHeEEC-------------------
Confidence            589999 89999988765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (323)
T cd05575         131 -----------------------------------------------------SQGHVVLTDFGLCKEGIEHSKTTSTFC  157 (323)
T ss_pred             -----------------------------------------------------CCCcEEEeccCCCcccccCCCcccccc
Confidence                                                                 34579999999885432   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                      
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~------~~~~~~~i~----------------------  209 (323)
T cd05575         158 GTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD------TAEMYDNIL----------------------  209 (323)
T ss_pred             CChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC------HHHHHHHHH----------------------
Confidence            8999999999999999999999999999999999999997651      111111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH----HHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell~hpwf~~~~~~~  304 (329)
                                          ......+...+..+.+||++||+.||++|+++    .|+++||||....+..
T Consensus       210 --------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~~~~~  261 (323)
T cd05575         210 --------------------NKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDD  261 (323)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCCCHHH
Confidence                                11111223346788999999999999999998    5999999998876543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=1.8e-31  Score=246.54  Aligned_cols=180  Identities=28%  Similarity=0.409  Sum_probs=143.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||+. ||+||||||+||++.                   
T Consensus        77 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~-------------------  134 (323)
T cd05584          77 LILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLHQQ-GIIYRDLKPENILLD-------------------  134 (323)
T ss_pred             EEEeCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEC-------------------
Confidence            589999 89999998765  3488899999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       135 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (323)
T cd05584         135 -----------------------------------------------------AQGHVKLTDFGLCKESIHEGTVTHTFC  161 (323)
T ss_pred             -----------------------------------------------------CCCCEEEeeCcCCeecccCCCcccccC
Confidence                                                                 34579999999874322   1223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      ....+..+.                      
T Consensus       162 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~------~~~~~~~~~----------------------  213 (323)
T cd05584         162 GTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN------RKKTIDKIL----------------------  213 (323)
T ss_pred             CCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC------HHHHHHHHH----------------------
Confidence            8899999999998889999999999999999999999997652      222222211                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~  303 (329)
                                          ......+...+..+.+||++||+.||++|+     ++.++++||||....+.
T Consensus       214 --------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~~~~  265 (323)
T cd05584         214 --------------------KGKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHVNWD  265 (323)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCCCHH
Confidence                                111122334466889999999999999999     89999999999876543

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=2.8e-31  Score=249.07  Aligned_cols=184  Identities=23%  Similarity=0.401  Sum_probs=141.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||+. ||+||||||+||++.                   
T Consensus        78 lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~~-------------------  135 (364)
T cd05599          78 LIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIHKL-GYIHRDIKPDNLLLD-------------------  135 (364)
T ss_pred             EEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEEC-------------------
Confidence            589999 89999998865  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       136 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  162 (364)
T cd05599         136 -----------------------------------------------------AKGHIKLSDFGLCTGLKKSHRTEFYRI  162 (364)
T ss_pred             -----------------------------------------------------CCCCEEEeecccceecccccccccccc
Confidence                                                                 3457899999987432210        


Q ss_pred             ---------------------------------cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          152 ---------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       152 ---------------------------------~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                                                       ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~  242 (364)
T cd05599         163 LSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSD  242 (364)
T ss_pred             ccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCC
Confidence                                             11236899999999999989999999999999999999999999765


Q ss_pred             CCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhcc
Q 020248          199 SGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLL  278 (329)
Q Consensus       199 ~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L  278 (329)
                      .      .......+..            +...-                          ..+.....+..+.+||++||
T Consensus       243 ~------~~~~~~~i~~------------~~~~~--------------------------~~~~~~~~s~~~~~li~~ll  278 (364)
T cd05599         243 N------PQETYRKIIN------------WKETL--------------------------QFPDEVPLSPEAKDLIKRLC  278 (364)
T ss_pred             C------HHHHHHHHHc------------CCCcc--------------------------CCCCCCCCCHHHHHHHHHHc
Confidence            2      2222222211            00000                          00001123568899999999


Q ss_pred             CCCCCCCcC---HHHHhcCCCcCCCCCCh
Q 020248          279 DFTPEKRPT---AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       279 ~~dP~~R~t---a~ell~hpwf~~~~~~~  304 (329)
                      . +|.+|++   +.|+++||||....+..
T Consensus       279 ~-~p~~R~~~~~~~~ll~h~~~~~~~~~~  306 (364)
T cd05599         279 C-EAERRLGNNGVNEIKSHPFFKGVDWEH  306 (364)
T ss_pred             c-CHhhcCCCCCHHHHhcCCCcCCCCHHH
Confidence            7 9999998   99999999999886644

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.97  E-value=4e-31  Score=248.84  Aligned_cols=186  Identities=24%  Similarity=0.394  Sum_probs=143.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...   .+++..+..++.||+.||+|||++ ||+||||||+||+++                   
T Consensus       120 lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NILl~-------------------  176 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLLD-------------------  176 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEc-------------------
Confidence            589999 89999998764   388999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       177 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  203 (370)
T cd05596         177 -----------------------------------------------------KSGHLKLADFGTCMKMDANGMVRCDTA  203 (370)
T ss_pred             -----------------------------------------------------CCCCEEEEeccceeeccCCCcccCCCC
Confidence                                                                 345799999999865432    12345


Q ss_pred             CCCCCCcchHHhhcC----CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          156 IQTRQYRAPEVILRA----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~----~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      .|++.|+|||++.+.    .++.++|+|||||++|+|++|..||....      .......+......+           
T Consensus       204 ~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~-----------  266 (370)
T cd05596         204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMDHKNSL-----------  266 (370)
T ss_pred             CCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCC------HHHHHHHHHcCCCcC-----------
Confidence            689999999998754    37899999999999999999999997652      222222221100000           


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChhh
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                                 ..+.....+.++.+||++||+.+|.+  |+|+.|+++||||+...+....
T Consensus       267 ---------------------------~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~~~~~~~  316 (370)
T cd05596         267 ---------------------------TFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKNDQWTFDN  316 (370)
T ss_pred             ---------------------------CCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCCChhhHH
Confidence                                       00001123678999999999999988  9999999999999987665444

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=4.4e-31  Score=228.08  Aligned_cols=167  Identities=24%  Similarity=0.381  Sum_probs=136.4

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHh--hCC--ccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHR--ELG--IIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~--~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      ||||+| +++|...+.+.+.  +.+++..+..++.|++.||.++|+  . .  |+||||||.||+++             
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~-r~~VmHRDIKPaNIFl~-------------  162 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIP-RGTVMHRDIKPANIFLT-------------  162 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcccc-ccceeeccCcchheEEc-------------
Confidence            689999 8999999987653  459999999999999999999998  4 3  99999999999993             


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  150 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---  150 (329)
                                                                                 ....+||+|||++..+..   
T Consensus       163 -----------------------------------------------------------~~gvvKLGDfGL~r~l~s~~t  183 (375)
T KOG0591|consen  163 -----------------------------------------------------------ANGVVKLGDFGLGRFLSSKTT  183 (375)
T ss_pred             -----------------------------------------------------------CCCceeeccchhHhHhcchhH
Confidence                                                                       356899999999976664   


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      -+.+.+|||+||+||++.+.+|+++|||||+||++|||..-.+||.+.      +-...-..|.+               
T Consensus       184 fA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~------n~~~L~~KI~q---------------  242 (375)
T KOG0591|consen  184 FAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD------NLLSLCKKIEQ---------------  242 (375)
T ss_pred             HHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc------cHHHHHHHHHc---------------
Confidence            345679999999999999999999999999999999999999999875      11222222211               


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhc-CCC-hhhHHHHHHHHhhccCCCCCCCcCH
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKY-RFS-ETDAREFAEFLVPLLDFTPEKRPTA  288 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~dll~~~L~~dP~~R~ta  288 (329)
                                                 ..+ +.+ .-.+..+..|+..|+..||+.||++
T Consensus       243 ---------------------------gd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  243 ---------------------------GDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             ---------------------------CCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence                                       111 123 3346788999999999999999996

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=1.2e-30  Score=235.93  Aligned_cols=205  Identities=28%  Similarity=0.434  Sum_probs=150.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..+++..+..++.||+.||.|||++ |++|+||||+||++.                    
T Consensus        76 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dl~~~nil~~--------------------  133 (284)
T cd07839          76 LVFEYCDQDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHSH-NVLHRDLKPQNLLIN--------------------  133 (284)
T ss_pred             EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEc--------------------
Confidence            589999778888876543 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       134 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  161 (284)
T cd07839         134 ----------------------------------------------------KNGELKLADFGLARAFGIPVRCYSAEVV  161 (284)
T ss_pred             ----------------------------------------------------CCCcEEECccchhhccCCCCCCcCCCcc
Confidence                                                                245799999999865432   2223456


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+|||||++|+|++|..||....     +....+..+.+.++..+...+........+ .
T Consensus       162 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  235 (284)
T cd07839         162 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEESWPGVSKLPDY-K  235 (284)
T ss_pred             ccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCC-----CHHHHHHHHHHHhCCCChHHhHHhhhcccc-c
Confidence            7889999998775 47999999999999999999998875432     345677777777777665443222111111 0


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .......     ......       .....+..+.+||++||.+||++|||++|+++||||
T Consensus       236 ~~~~~~~-----~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         236 PYPMYPA-----TTSLVN-------VVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             ccCCCCC-----cchhhh-------hcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            0000000     000000       112345788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.6e-31  Score=249.67  Aligned_cols=184  Identities=23%  Similarity=0.389  Sum_probs=138.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.|++.||+|||+. ||+||||||+||+++.                  
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~-givHrDlkp~NIll~~------------------  136 (377)
T cd05629          78 LIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVHKL-GFIHRDIKPDNILIDR------------------  136 (377)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEECC------------------
Confidence            589999 89999998765  4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...++|+|||++.....         
T Consensus       137 ------------------------------------------------------~~~~kl~DfGla~~~~~~~~~~~~~~  162 (377)
T cd05629         137 ------------------------------------------------------GGHIKLSDFGLSTGFHKQHDSAYYQK  162 (377)
T ss_pred             ------------------------------------------------------CCCEEEeecccccccccccccccccc
Confidence                                                                  34688888887742110         


Q ss_pred             -----------------------------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHH
Q 020248          151 -----------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA  189 (329)
Q Consensus       151 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~  189 (329)
                                                               .....+||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell  242 (377)
T cd05629         163 LLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECL  242 (377)
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhh
Confidence                                                     001246899999999999989999999999999999999


Q ss_pred             hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHH
Q 020248          190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDARE  269 (329)
Q Consensus       190 ~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
                      +|..||....      .......+......++                                      .+.....+.+
T Consensus       243 tG~~Pf~~~~------~~~~~~~i~~~~~~~~--------------------------------------~p~~~~~s~~  278 (377)
T cd05629         243 IGWPPFCSEN------SHETYRKIINWRETLY--------------------------------------FPDDIHLSVE  278 (377)
T ss_pred             cCCCCCCCCC------HHHHHHHHHccCCccC--------------------------------------CCCCCCCCHH
Confidence            9999997652      2222222221000000                                      0001123567


Q ss_pred             HHHHHhhccCCCCCCC---cCHHHHhcCCCcCCCCCCh
Q 020248          270 FAEFLVPLLDFTPEKR---PTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       270 ~~dll~~~L~~dP~~R---~ta~ell~hpwf~~~~~~~  304 (329)
                      +.+||.+||+ +|.+|   +|+.|+++||||++.++..
T Consensus       279 ~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~~~~  315 (377)
T cd05629         279 AEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVDWDT  315 (377)
T ss_pred             HHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCCHHH
Confidence            8999999998 77776   4999999999999876533

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.97  E-value=3.5e-31  Score=246.84  Aligned_cols=177  Identities=31%  Similarity=0.492  Sum_probs=148.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|.|||-++|+.++....  .++++.++.++.|++.||.|||+. +|.|||+||.||++                     
T Consensus        78 vVte~a~g~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs~-rilhrd~kPqniLl---------------------  133 (808)
T KOG0597|consen   78 VVTEYAVGDLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHSN-RILHRDMKPQNILL---------------------  133 (808)
T ss_pred             EEehhhhhhHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhc-CcccccCCcceeee---------------------
Confidence            588999449999999874  599999999999999999999994 99999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                         +....+|++|||+|+.+...   .+..-|
T Consensus       134 ---------------------------------------------------~~~~~~KlcdFg~Ar~m~~~t~vltsikG  162 (808)
T KOG0597|consen  134 ---------------------------------------------------EKGGTLKLCDFGLARAMSTNTSVLTSIKG  162 (808)
T ss_pred             ---------------------------------------------------cCCCceeechhhhhhhcccCceeeeeccC
Confidence                                                               44567999999999766643   344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ||.|||||+..+.+|++.+|+||||||+||++.|++||...+       ..++                           
T Consensus       163 tPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s-------i~~L---------------------------  208 (808)
T KOG0597|consen  163 TPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS-------ITQL---------------------------  208 (808)
T ss_pred             cccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH-------HHHH---------------------------
Confidence            999999999999999999999999999999999999997541       1111                           


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                    .+.+....-..+...+..|+.|++.+|..||.+|+|-.+++.|||+++.
T Consensus       209 --------------v~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~  257 (808)
T KOG0597|consen  209 --------------VKSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGK  257 (808)
T ss_pred             --------------HHHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhh
Confidence                          1222233333455667899999999999999999999999999998754

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-31  Score=248.07  Aligned_cols=179  Identities=28%  Similarity=0.432  Sum_probs=139.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+...  ..+++..++.++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        73 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~-~ivHrDlkp~Nili~-------------------  130 (330)
T cd05586          73 LVTDYMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKY-DIVYRDLKPENILLD-------------------  130 (330)
T ss_pred             EEEcCCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEEC-------------------
Confidence            589999 89999888765  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  157 (330)
T cd05586         131 -----------------------------------------------------ATGHIALCDFGLSKANLTDNKTTNTFC  157 (330)
T ss_pred             -----------------------------------------------------CCCCEEEecCCcCcCCCCCCCCccCcc
Confidence                                                                 24579999999985432   2233456


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      |+..|+|||++.+. .++.++|||||||++|+|++|..||....      .......+.  .+.                
T Consensus       158 gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~------~~~~~~~i~--~~~----------------  213 (330)
T cd05586         158 GTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAED------TQQMYRNIA--FGK----------------  213 (330)
T ss_pred             CCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCC------HHHHHHHHH--cCC----------------
Confidence            89999999999765 48999999999999999999999997641      111111111  000                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCC-hhhHHHHHHHHhhccCCCCCCCc----CHHHHhcCCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFS-ETDAREFAEFLVPLLDFTPEKRP----TAQQCLQHPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dll~~~L~~dP~~R~----ta~ell~hpwf~~~~~  302 (329)
                                              ...+ ...+..+.+||++||..||.+|+    ++.++++||||....+
T Consensus       214 ------------------------~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~~~  261 (330)
T cd05586         214 ------------------------VRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDW  261 (330)
T ss_pred             ------------------------CCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCCCH
Confidence                                    0011 12356788999999999999998    7999999999987653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=9.7e-31  Score=236.38  Aligned_cols=189  Identities=25%  Similarity=0.400  Sum_probs=144.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||+|||+. |++||||||+||++..                  
T Consensus        70 lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dikp~Nili~~------------------  130 (277)
T cd05607          70 LVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM-DIVYRDMKPENVLLDD------------------  130 (277)
T ss_pred             EEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEEEccCChHhEEEcC------------------
Confidence            589999 89999988766555689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                            ...++|+|||.+.....  ......+
T Consensus       131 ------------------------------------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~  156 (277)
T cd05607         131 ------------------------------------------------------QGNCRLSDLGLAVELKDGKTITQRAG  156 (277)
T ss_pred             ------------------------------------------------------CCCEEEeeceeeeecCCCceeeccCC
Confidence                                                                  44689999999865443  2233467


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||++.+..++.++|+||+||++|+|++|..||.....     +.. ...+...                     
T Consensus       157 ~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~-----~~~-~~~~~~~---------------------  209 (277)
T cd05607         157 TNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKE-----KVA-KEELKRR---------------------  209 (277)
T ss_pred             CCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcc-----hhh-HHHHHHH---------------------
Confidence            8899999999988899999999999999999999999975421     000 0011000                     


Q ss_pred             cCchhhhccccccchhHHHhhhcC-CChhhHHHHHHHHhhccCCCCCCCcCH----HHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYR-FSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell~hpwf~~~~~~~~~  306 (329)
                                       ....... .....+.++.+||++||+.||++||++    .++++||||...+++.-+
T Consensus       210 -----------------~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~~~~~~~  266 (277)
T cd05607         210 -----------------TLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTINFPRLE  266 (277)
T ss_pred             -----------------hhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCCCHHHHh
Confidence                             0000000 011235678999999999999999999    667899999987764444

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.97  E-value=9.8e-31  Score=247.13  Aligned_cols=185  Identities=23%  Similarity=0.355  Sum_probs=138.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..+++..++.++.||+.||.|||+. ||+||||||+||+++                   
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~~LH~~-givHrDlKp~Nili~-------------------  135 (381)
T cd05626          78 FVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKM-GFIHRDIKPDNILID-------------------  135 (381)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCcHHHEEEC-------------------
Confidence            589999 89999998865  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                           ....++|+|||++.....         
T Consensus       136 -----------------------------------------------------~~~~~kL~DFGl~~~~~~~~~~~~~~~  162 (381)
T cd05626         136 -----------------------------------------------------LDGHIKLTDFGLCTGFRWTHNSKYYQK  162 (381)
T ss_pred             -----------------------------------------------------CCCCEEEeeCcCCcccccccccccccc
Confidence                                                                 245689999997632110         


Q ss_pred             -----------------------------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHH
Q 020248          151 -----------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA  189 (329)
Q Consensus       151 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~  189 (329)
                                                               .....+||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~ell  242 (381)
T cd05626         163 GSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEML  242 (381)
T ss_pred             cccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHH
Confidence                                                     012347899999999999989999999999999999999


Q ss_pred             hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHH
Q 020248          190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDARE  269 (329)
Q Consensus       190 ~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
                      +|..||....      .......+....+.+                                      ..+.....+.+
T Consensus       243 tG~~Pf~~~~------~~~~~~~i~~~~~~~--------------------------------------~~~~~~~~s~~  278 (381)
T cd05626         243 VGQPPFLAPT------PTETQLKVINWENTL--------------------------------------HIPPQVKLSPE  278 (381)
T ss_pred             hCCCCCcCCC------HHHHHHHHHcccccc--------------------------------------CCCCCCCCCHH
Confidence            9999997652      222222221100000                                      00001123568


Q ss_pred             HHHHHhhccCCC--CCCCcCHHHHhcCCCcCCCCCCh
Q 020248          270 FAEFLVPLLDFT--PEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       270 ~~dll~~~L~~d--P~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      +.+||.+|+..+  |..|+++.|+++||||....+..
T Consensus       279 ~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~~~~  315 (381)
T cd05626         279 AVDLITKLCCSAEERLGRNGADDIKAHPFFSEVDFSS  315 (381)
T ss_pred             HHHHHHHHccCcccccCCCCHHHHhcCcccCCCChhH
Confidence            899999966554  44599999999999999876654

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=8e-32  Score=244.92  Aligned_cols=179  Identities=34%  Similarity=0.512  Sum_probs=145.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||| |+++.+++....  .+.+..+.-++++++.|+.|||++ +.+|||||+.||++.                   
T Consensus        88 iiMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~-~kiHrDIKaanil~s-------------------  145 (467)
T KOG0201|consen   88 IIMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSE-KKIHRDIKAANILLS-------------------  145 (467)
T ss_pred             HHHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhc-ceecccccccceeEe-------------------
Confidence            479999 899999999864  358889999999999999999996 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+...+.   ...+++
T Consensus       146 -----------------------------------------------------~~g~vkl~DfgVa~ql~~~~~rr~tfv  172 (467)
T KOG0201|consen  146 -----------------------------------------------------ESGDVKLADFGVAGQLTNTVKRRKTFV  172 (467)
T ss_pred             -----------------------------------------------------ccCcEEEEecceeeeeechhhcccccc
Confidence                                                                 346799999999955442   336789


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||++|||||++.+..|+.++||||||++.+||++|.+||....+      ..++-       .+|               
T Consensus       173 GTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hP------mrvlf-------lIp---------------  224 (467)
T KOG0201|consen  173 GTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHP------MRVLF-------LIP---------------  224 (467)
T ss_pred             ccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCc------ceEEE-------ecc---------------
Confidence            99999999999988999999999999999999999999987621      00000       000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                               .          ..+......+++.|.+|+..||..||+.||||.++|+|+|++...
T Consensus       225 ---------k----------~~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  225 ---------K----------SAPPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKRAK  270 (467)
T ss_pred             ---------C----------CCCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHhcC
Confidence                     0          000112234467899999999999999999999999999999844

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.3e-31  Score=249.06  Aligned_cols=174  Identities=32%  Similarity=0.508  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||.+ |+-|.+.+.....  +. ..+..|+.+|+.|+.|||++ ||+||||||+|||+.                   
T Consensus       393 ~v~e~l~g~ell~ri~~~~~--~~-~e~~~w~~~lv~Av~~LH~~-gvvhRDLkp~NIL~~-------------------  449 (612)
T KOG0603|consen  393 LVMELLDGGELLRRIRSKPE--FC-SEASQWAAELVSAVDYLHEQ-GVVHRDLKPGNILLD-------------------  449 (612)
T ss_pred             eeehhccccHHHHHHHhcch--hH-HHHHHHHHHHHHHHHHHHhc-CeeecCCChhheeec-------------------
Confidence            589999 7776666666532  33 78889999999999999995 999999999999992                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          +...+++|+|||++...+....+.+.|.
T Consensus       450 ----------------------------------------------------~~~g~lrltyFG~a~~~~~~~~tp~~t~  477 (612)
T KOG0603|consen  450 ----------------------------------------------------GSAGHLRLTYFGFWSELERSCDTPALTL  477 (612)
T ss_pred             ----------------------------------------------------CCCCcEEEEEechhhhCchhhcccchhh
Confidence                                                                1245799999999987776666667789


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|.|||++....|+..+|+||||+++|+|++|+.||...++      .   ..+...++..+                  
T Consensus       478 ~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~------~---~ei~~~i~~~~------------------  530 (612)
T KOG0603|consen  478 QYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPA------G---IEIHTRIQMPK------------------  530 (612)
T ss_pred             cccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCc------h---HHHHHhhcCCc------------------
Confidence            99999999999999999999999999999999999987742      1   22222222211                  


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                            ++...+..++|||++||+.||.+|+++.++..||||.
T Consensus       531 ----------------------~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~~  567 (612)
T KOG0603|consen  531 ----------------------FSECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWFL  567 (612)
T ss_pred             ----------------------cccccCHHHHHHHHHhccCChhhCcChhhhccCcchh
Confidence                                  2244578999999999999999999999999999993

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.97  E-value=9.4e-31  Score=241.84  Aligned_cols=182  Identities=25%  Similarity=0.387  Sum_probs=144.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.||+.||.|||++ |++||||||+||+++                   
T Consensus        78 lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivHrDikp~Nill~-------------------  135 (323)
T cd05615          78 FVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLHRR-GIIYRDLKLDNVMLD-------------------  135 (323)
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEEC-------------------
Confidence            589999 89999988765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       136 -----------------------------------------------------~~~~ikL~Dfg~~~~~~~~~~~~~~~~  162 (323)
T cd05615         136 -----------------------------------------------------SEGHIKIADFGMCKEHMVDGVTTRTFC  162 (323)
T ss_pred             -----------------------------------------------------CCCCEEEeccccccccCCCCccccCcc
Confidence                                                                 245799999998854321   223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|+||+||++|+|++|..||...      ........+..                     
T Consensus       163 gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~------~~~~~~~~i~~---------------------  215 (323)
T cd05615         163 GTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE------DEDELFQSIME---------------------  215 (323)
T ss_pred             CCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC------CHHHHHHHHHh---------------------
Confidence            899999999999888999999999999999999999999765      22222222211                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~  305 (329)
                                           .....+...+..+.+|+.+||+.||.+|++     ..++++||||...++..-
T Consensus       216 ---------------------~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~~~~~~  268 (323)
T cd05615         216 ---------------------HNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRIDWDKL  268 (323)
T ss_pred             ---------------------CCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCCCHHHH
Confidence                                 111122334567899999999999999997     478999999998875433

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.97  E-value=3.7e-31  Score=248.08  Aligned_cols=186  Identities=22%  Similarity=0.390  Sum_probs=141.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.|++.||+|||+. ||+||||||+||++.                   
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~~-givHrDLkp~NIli~-------------------  135 (360)
T cd05627          78 LIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQL-GFIHRDIKPDNLLLD-------------------  135 (360)
T ss_pred             EEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEccCCCHHHEEEC-------------------
Confidence            689999 89999998765  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       136 -----------------------------------------------------~~~~vkL~DfG~~~~~~~~~~~~~~~~  162 (360)
T cd05627         136 -----------------------------------------------------AKGHVKLSDFGLCTGLKKAHRTEFYRN  162 (360)
T ss_pred             -----------------------------------------------------CCCCEEEeeccCCcccccccccccccc
Confidence                                                                 2457899999987432210        


Q ss_pred             ------------------------------cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCC
Q 020248          152 ------------------------------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ  201 (329)
Q Consensus       152 ------------------------------~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~  201 (329)
                                                    ....+||+.|+|||++.+..++.++|+|||||++|+|++|+.||....  
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~--  240 (360)
T cd05627         163 LTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET--  240 (360)
T ss_pred             cccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC--
Confidence                                          123468999999999999999999999999999999999999997652  


Q ss_pred             CCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCC
Q 020248          202 GFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFT  281 (329)
Q Consensus       202 ~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~d  281 (329)
                          .......+......+                                      ..+.....+..+.+||.+|+. |
T Consensus       241 ----~~~~~~~i~~~~~~~--------------------------------------~~p~~~~~s~~~~~li~~l~~-~  277 (360)
T cd05627         241 ----PQETYRKVMNWKETL--------------------------------------VFPPEVPISEKAKDLILRFCT-D  277 (360)
T ss_pred             ----HHHHHHHHHcCCCce--------------------------------------ecCCCCCCCHHHHHHHHHhcc-C
Confidence                222222221100000                                      000011135678999999875 9


Q ss_pred             CCCCcC---HHHHhcCCCcCCCCCChhh
Q 020248          282 PEKRPT---AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       282 P~~R~t---a~ell~hpwf~~~~~~~~~  306 (329)
                      |++|++   +.|+++||||.+.+|..-.
T Consensus       278 p~~R~~~~~~~ei~~hp~f~~~~~~~~~  305 (360)
T cd05627         278 SENRIGSNGVEEIKSHPFFEGVDWGHIR  305 (360)
T ss_pred             hhhcCCCCCHHHHhcCCCCCCCCHHHHh
Confidence            999994   7999999999998776543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.97  E-value=3.2e-31  Score=245.41  Aligned_cols=185  Identities=24%  Similarity=0.409  Sum_probs=142.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..+++..+..++.||+.||.|||+. ||+||||||+||+++                   
T Consensus        78 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~-~i~H~Dlkp~NIll~-------------------  136 (330)
T cd05601          78 LVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQM-GYVHRDIKPENVLID-------------------  136 (330)
T ss_pred             EEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEcccCchHheEEC-------------------
Confidence            589999 999999998753 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       137 -----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~  163 (330)
T cd05601         137 -----------------------------------------------------RTGHIKLADFGSAARLTANKMVNSKLP  163 (330)
T ss_pred             -----------------------------------------------------CCCCEEeccCCCCeECCCCCceeeecc
Confidence                                                                 3457999999998654321    1224


Q ss_pred             CCCCCCcchHHhh------cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          156 IQTRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       156 ~~~~~y~aPE~~~------~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      .+++.|+|||++.      ...++.++|||||||++|+|++|..||....      ....+..+......+         
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~---------  228 (330)
T cd05601         164 VGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT------SAKTYNNIMNFQRFL---------  228 (330)
T ss_pred             cCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCC------HHHHHHHHHcCCCcc---------
Confidence            6789999999987      4567899999999999999999999997652      222222221110000         


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                                   ..+.....+..+.+||++||+ +|.+|+|+.++++||||...++..
T Consensus       229 -----------------------------~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~~~~~  273 (330)
T cd05601         229 -----------------------------KFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKIDWNN  273 (330)
T ss_pred             -----------------------------CCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCCCHHH
Confidence                                         000011235678999999998 999999999999999999876543

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.97  E-value=2e-31  Score=245.71  Aligned_cols=181  Identities=30%  Similarity=0.448  Sum_probs=145.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..++.++.||+.||.|||+. ||+||||||+||++.                   
T Consensus        75 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~-------------------  132 (318)
T cd05582          75 LILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILLD-------------------  132 (318)
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHeEEC-------------------
Confidence            589999 89999998765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       133 -----------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~  159 (318)
T cd05582         133 -----------------------------------------------------EEGHIKLTDFGLSKESIDHEKKAYSFC  159 (318)
T ss_pred             -----------------------------------------------------CCCcEEEeeccCCcccCCCCCceeccc
Confidence                                                                 245789999999865432   233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||...      +....+..+.                      
T Consensus       160 g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~------~~~~~~~~i~----------------------  211 (318)
T cd05582         160 GTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK------DRKETMTMIL----------------------  211 (318)
T ss_pred             CChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC------CHHHHHHHHH----------------------
Confidence            889999999999888999999999999999999999999764      2222222221                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~  304 (329)
                                          .....++...+..+.+||++||+.||++|+|     +.++++||||....+..
T Consensus       212 --------------------~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~~~~~  264 (318)
T cd05582         212 --------------------KAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTIDWNK  264 (318)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCCCHHH
Confidence                                1111233344678899999999999999999     67799999999876543

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=1.5e-30  Score=235.26  Aligned_cols=205  Identities=29%  Similarity=0.436  Sum_probs=149.8

Q ss_pred             CcccccchhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLGDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+.++|.+++..... ..++...+..++.||+.||.|||+. |++|+||+|+||++.                   
T Consensus        76 ~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~~-------------------  135 (285)
T cd07861          76 LIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR-RVLHRDLKPQNLLID-------------------  135 (285)
T ss_pred             EEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEEc-------------------
Confidence            5899997788888865432 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       136 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (285)
T cd07861         136 -----------------------------------------------------NKGVIKLADFGLARAFGIPVRVYTHEV  162 (285)
T ss_pred             -----------------------------------------------------CCCcEEECcccceeecCCCcccccCCc
Confidence                                                                 2457999999988544322   23345


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||++.+. .++.++|+|||||++|+|++|+.||.+.      .....+..+.+.+|......+........+.
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (285)
T cd07861         163 VTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGD------SEIDQLFRIFRILGTPTEDVWPGVTSLPDYK  236 (285)
T ss_pred             ccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHhCCCChhhhhcchhhHHHH
Confidence            67889999998764 5789999999999999999999999865      3455666666667765554443222211111


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ......      .......       .....+.++.+||++||..||++|||+.++++||||
T Consensus       237 ~~~~~~------~~~~~~~-------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         237 NTFPKW------KKGSLRS-------AVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             hhcccc------CcchhHH-------hcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            100000      0000000       112246688999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.97  E-value=6.8e-31  Score=248.19  Aligned_cols=185  Identities=24%  Similarity=0.392  Sum_probs=140.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||+. ||+||||||+||+++                   
T Consensus        78 lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH~~-~ivHrDlKp~NILl~-------------------  135 (382)
T cd05625          78 FVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKM-GFIHRDIKPDNILID-------------------  135 (382)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC-------------------
Confidence            689999 88999998765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                           ....++|+|||++.....         
T Consensus       136 -----------------------------------------------------~~g~~kL~DFGla~~~~~~~~~~~~~~  162 (382)
T cd05625         136 -----------------------------------------------------RDGHIKLTDFGLCTGFRWTHDSKYYQS  162 (382)
T ss_pred             -----------------------------------------------------CCCCEEEeECCCCcccccccccccccc
Confidence                                                                 245689999997632110         


Q ss_pred             -----------------------------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHH
Q 020248          151 -----------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA  189 (329)
Q Consensus       151 -----------------------------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~  189 (329)
                                                               .....+||+.|+|||++.+..++.++||||+||++|+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~ell  242 (382)
T cd05625         163 GDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEML  242 (382)
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHH
Confidence                                                     012246899999999999999999999999999999999


Q ss_pred             hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHH
Q 020248          190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDARE  269 (329)
Q Consensus       190 ~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
                      +|..||....      .......+......+                                      ..+.....+.+
T Consensus       243 tG~~Pf~~~~------~~~~~~~i~~~~~~~--------------------------------------~~p~~~~~s~~  278 (382)
T cd05625         243 VGQPPFLAQT------PLETQMKVINWQTSL--------------------------------------HIPPQAKLSPE  278 (382)
T ss_pred             hCCCCCCCCC------HHHHHHHHHccCCCc--------------------------------------CCCCcccCCHH
Confidence            9999997652      222222221100000                                      00001123567


Q ss_pred             HHHHHhhccCCCCCCCcC---HHHHhcCCCcCCCCCChh
Q 020248          270 FAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       270 ~~dll~~~L~~dP~~R~t---a~ell~hpwf~~~~~~~~  305 (329)
                      +.+||.+|+ .+|++|++   +.|+++||||....+...
T Consensus       279 ~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~~~  316 (382)
T cd05625         279 ASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDFSSD  316 (382)
T ss_pred             HHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcChHHH
Confidence            889999986 49999997   999999999998876543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=9.4e-31  Score=242.89  Aligned_cols=220  Identities=23%  Similarity=0.328  Sum_probs=146.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  ..++...+..++.|++.||.|||++.+++|+||||+||++..                  
T Consensus        80 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~------------------  139 (333)
T cd06650          80 ICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNS------------------  139 (333)
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcC------------------
Confidence            589999 89999999865  348899999999999999999997447999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~  158 (329)
                                                                            ...++|+|||.+...... .....++
T Consensus       140 ------------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~  165 (333)
T cd06650         140 ------------------------------------------------------RGEIKLCDFGVSGQLIDSMANSFVGT  165 (333)
T ss_pred             ------------------------------------------------------CCCEEEeeCCcchhhhhhccccCCCC
Confidence                                                                  346999999998554332 2334678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ..|+|||++.+..++.++|+|||||++|+|++|+.||....       .   ..+...++................-...
T Consensus       166 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T cd06650         166 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPD-------A---KELELMFGCPVEGDPAESETSPRPRPPG  235 (333)
T ss_pred             ccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcc-------h---hHHHHHhcCcccCCccccccCcccCCcc
Confidence            89999999998889999999999999999999999997542       1   1122222211110000000000000000


Q ss_pred             Cchhhhcc---cccc---chhHHHhhhc-CC-ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          239 GDLKRIRR---LKFW---SLDRLLVDKY-RF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       239 ~~~~~~~~---~~~~---~~~~~~~~~~-~~-~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      ..+.....   ....   ....+..... .. ....+.++.+||.+||++||++|||+.|+++||||+......
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~~~  309 (333)
T cd06650         236 RPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSEAEE  309 (333)
T ss_pred             chhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCcccc
Confidence            00000000   0000   0011111110 01 112457899999999999999999999999999998765433

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.97  E-value=1.8e-31  Score=246.68  Aligned_cols=180  Identities=26%  Similarity=0.349  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|...+...  ..+++..+..++.||+.||+|||+. ||+||||||+||+++                   
T Consensus        73 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-givH~Dlkp~NIll~-------------------  130 (325)
T cd05604          73 FVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSI-NIVYRDLKPENILLD-------------------  130 (325)
T ss_pred             EEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEEC-------------------
Confidence            589999 88998888765  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  157 (325)
T cd05604         131 -----------------------------------------------------SQGHVVLTDFGLCKEGIAQSDTTTTFC  157 (325)
T ss_pred             -----------------------------------------------------CCCCEEEeecCCcccCCCCCCCccccc
Confidence                                                                 34579999999985422   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+.                      
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~------~~~~~~~~~----------------------  209 (325)
T cd05604         158 GTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD------VAEMYDNIL----------------------  209 (325)
T ss_pred             CChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC------HHHHHHHHH----------------------
Confidence            8999999999999999999999999999999999999997641      121111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH----HHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell~hpwf~~~~~~  303 (329)
                                          ..........+..+.++|++||+.||++|+++    .++++||||....+.
T Consensus       210 --------------------~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~~~~  260 (325)
T cd05604         210 --------------------HKPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWT  260 (325)
T ss_pred             --------------------cCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCCCHH
Confidence                                01111122345678899999999999999987    589999999986553

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=1.9e-30  Score=237.90  Aligned_cols=211  Identities=27%  Similarity=0.407  Sum_probs=158.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.||+.||.|||+. |++||||||+||++.                    
T Consensus        85 lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~--------------------  142 (309)
T cd07845          85 LVMEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHEN-FIIHRDLKVSNLLLT--------------------  142 (309)
T ss_pred             EEEecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC--------------------
Confidence            589999778988887643 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                          ....++|+|||.+......   .....+
T Consensus       143 ----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~  170 (309)
T cd07845         143 ----------------------------------------------------DKGCLKIADFGLARTYGLPAKPMTPKVV  170 (309)
T ss_pred             ----------------------------------------------------CCCCEEECccceeeecCCccCCCCcccc
Confidence                                                                2457999999998655432   222344


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||++.+ ..++.++|+||+||++|+|++|..||...      +....+..+...+|..+..++.........  
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  242 (309)
T cd07845         171 TLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK------SEIEQLDLIIQLLGTPNESIWPGFSDLPLV--  242 (309)
T ss_pred             cccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCChhhchhhhccccc--
Confidence            678999999876 45899999999999999999999999876      567788888888888776665443222110  


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                        +.... ...........       ....+..+.+||++||++||++|||+.|+++||||+....+
T Consensus       243 --~~~~~-~~~~~~~~~~~-------~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~~  299 (309)
T cd07845         243 --GKFTL-PKQPYNNLKHK-------FPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKPLP  299 (309)
T ss_pred             --ccccc-cCCCCCchHHh-------ccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCCCC
Confidence              00000 00000001110       11135678999999999999999999999999999876544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-31  Score=245.89  Aligned_cols=176  Identities=29%  Similarity=0.521  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCC-cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~-l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ||+||| .+.+...-.   ..+ +++.+++.+++.++.||+|||.+ |||||||||+|+|+                   
T Consensus       187 lVley~s~G~v~w~p~---d~~els~~~Ar~ylrDvv~GLEYLH~Q-giiHRDIKPsNLLl-------------------  243 (576)
T KOG0585|consen  187 LVLEYCSKGEVKWCPP---DKPELSEQQARKYLRDVVLGLEYLHYQ-GIIHRDIKPSNLLL-------------------  243 (576)
T ss_pred             EEEEeccCCccccCCC---CcccccHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEE-------------------
Confidence            688998 555443322   234 89999999999999999999996 99999999999999                   


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--------c
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--------K  150 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--------~  150 (329)
                                                                           +...++||+|||.+..+.        .
T Consensus       244 -----------------------------------------------------~~~g~VKIsDFGVs~~~~~~~~~~~d~  270 (576)
T KOG0585|consen  244 -----------------------------------------------------SSDGTVKISDFGVSNEFPQGSDEGSDD  270 (576)
T ss_pred             -----------------------------------------------------cCCCcEEeeccceeeecccCCccccHH
Confidence                                                                 445789999999986541        1


Q ss_pred             ccccCCCCCCCcchHHhhcCC----CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh
Q 020248          151 QFAEEIQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  226 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~----~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  226 (329)
                      .....+|||+|+|||.+.+..    .+.+.||||+||++|.|+.|.+||.+..      ....                 
T Consensus       271 ~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~------~~~l-----------------  327 (576)
T KOG0585|consen  271 QLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDF------ELEL-----------------  327 (576)
T ss_pred             HHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccch------HHHH-----------------
Confidence            234468999999999998732    4789999999999999999999997652      1111                 


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChh--hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET--DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                               .+++......++..  ....+.|||.+||..||++|++..+|..|||.+.-
T Consensus       328 -------------------------~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  328 -------------------------FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             -------------------------HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence                                     23444444444433  57889999999999999999999999999999865

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.97  E-value=4.3e-31  Score=244.19  Aligned_cols=180  Identities=25%  Similarity=0.342  Sum_probs=143.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...++.++.||+.||.|||+. ||+||||||+||++.                   
T Consensus        73 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-giiHrDlkp~Nili~-------------------  130 (325)
T cd05602          73 FVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILLD-------------------  130 (325)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHeEEC-------------------
Confidence            589999 88999988765  3488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  157 (325)
T cd05602         131 -----------------------------------------------------SQGHIVLTDFGLCKENIEHNGTTSTFC  157 (325)
T ss_pred             -----------------------------------------------------CCCCEEEccCCCCcccccCCCCccccc
Confidence                                                                 24578999999985432   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      ....+..+.                      
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~----------------------  209 (325)
T cd05602         158 GTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN------TAEMYDNIL----------------------  209 (325)
T ss_pred             CCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCC------HHHHHHHHH----------------------
Confidence            8999999999999999999999999999999999999997652      222222211                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH----HHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ----QCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~----ell~hpwf~~~~~~  303 (329)
                                          ..........+..+.++|.+||+.||.+|+++.    ++++|+||...++.
T Consensus       210 --------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~~~~  260 (325)
T cd05602         210 --------------------NKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWD  260 (325)
T ss_pred             --------------------hCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCCCHH
Confidence                                111112233466889999999999999999876    89999999876653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.97  E-value=1.3e-30  Score=245.40  Aligned_cols=183  Identities=23%  Similarity=0.410  Sum_probs=139.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...   .++...++.++.||+.||+|||++ ||+||||||+||+++                   
T Consensus       120 lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~-~IvHrDLKp~NILl~-------------------  176 (370)
T cd05621         120 MVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSM-GLIHRDVKPDNMLLD-------------------  176 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHHEEEC-------------------
Confidence            589999 89999998754   389999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       177 -----------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~  203 (370)
T cd05621         177 -----------------------------------------------------KHGHLKLADFGTCMKMDETGMVRCDTA  203 (370)
T ss_pred             -----------------------------------------------------CCCCEEEEecccceecccCCceecccC
Confidence                                                                 3457999999998654321    2345


Q ss_pred             CCCCCCcchHHhhcCC----CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          156 IQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~----~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      .||+.|+|||++.+..    ++.++|+||+||++|+|++|..||...      +.......+......+.          
T Consensus       204 ~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~------~~~~~~~~i~~~~~~~~----------  267 (370)
T cd05621         204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD------SLVGTYSKIMDHKNSLN----------  267 (370)
T ss_pred             CCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCcccC----------
Confidence            6899999999998643    789999999999999999999999765      22222222221110000          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~  303 (329)
                                                  .+.....+..+.+|+.+||+.++.+  |+|+.|+++||||+...+.
T Consensus       268 ----------------------------~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~~~~  313 (370)
T cd05621         268 ----------------------------FPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKNDQWN  313 (370)
T ss_pred             ----------------------------CCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCCCcC
Confidence                                        0001123567889999999855543  8899999999999986543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-30  Score=211.64  Aligned_cols=209  Identities=30%  Similarity=0.443  Sum_probs=165.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||...|..++..-. +.++.+.++.++.|++.||.|+|++ +|.|||+||.|.+++                    
T Consensus        78 lvfe~cdqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchsh-nvlhrdlkpqnllin--------------------  135 (292)
T KOG0662|consen   78 LVFEFCDQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHSH-NVLHRDLKPQNLLIN--------------------  135 (292)
T ss_pred             EeHHHhhHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhhh-hhhhccCCcceEEec--------------------
Confidence            689999999999988754 5699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                          ....++|+|||++..+..+   ....+.
T Consensus       136 ----------------------------------------------------~ngelkladfglarafgipvrcysaevv  163 (292)
T KOG0662|consen  136 ----------------------------------------------------RNGELKLADFGLARAFGIPVRCYSAEVV  163 (292)
T ss_pred             ----------------------------------------------------cCCcEEecccchhhhcCCceEeeeceee
Confidence                                                                3567999999999766643   344566


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      |..|+||.+++|.+ |+...|+||.|||+.|+.. |+++|++.      +-.+++..|.+.+|.+.+.-|..-.+...|.
T Consensus       164 tlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~------dvddqlkrif~~lg~p~ed~wps~t~lpdyk  237 (292)
T KOG0662|consen  164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN------DVDDQLKRIFRLLGTPTEDQWPSMTKLPDYK  237 (292)
T ss_pred             eeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCC------cHHHHHHHHHHHhCCCccccCCccccCCCCc
Confidence            88999999999975 8999999999999999976 88888876      6788999999999998876554433332221


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      .. +     ......++..+...       ....-+||++++|.-+|..|++|+++|+||||.+.+.
T Consensus       238 ~y-p-----~ypattswsqivp~-------lns~grdllqkll~cnp~qrisaeaalqhpyf~d~s~  291 (292)
T KOG0662|consen  238 PY-P-----IYPATTSWSQIVPK-------LNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSDFSP  291 (292)
T ss_pred             cc-C-----CccccchHHHHhhh-------hcchhHHHHHHHhccCcccccCHHHHhcCccccccCC
Confidence            10 0     00111123333221       2345789999999999999999999999999998653

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=3.4e-30  Score=235.53  Aligned_cols=207  Identities=26%  Similarity=0.437  Sum_probs=154.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+.+.... ..+++..+..++.||+.||.|||++ |++|+||||+||+++                    
T Consensus        96 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dl~p~nil~~--------------------  153 (310)
T cd07865          96 LVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRN-KILHRDMKAANILIT--------------------  153 (310)
T ss_pred             EEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEC--------------------
Confidence            589999888888876542 3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------c
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------A  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------~  153 (329)
                                                                          ....++|+|||.+.......       .
T Consensus       154 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  181 (310)
T cd07865         154 ----------------------------------------------------KDGILKLADFGLARAFSLSKNSKPNRYT  181 (310)
T ss_pred             ----------------------------------------------------CCCcEEECcCCCcccccCCcccCCCCcc
Confidence                                                                24578999999986543211       2


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+. .++.++|+||+||++|+|++|+.||.+.      +....+..+....|.+|..++.......
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
T cd07865         182 NRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN------TEQHQLTLISQLCGSITPEVWPGVDKLE  255 (310)
T ss_pred             CcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChhhcccccchh
Confidence            23457789999998764 4789999999999999999999999765      4567778888889998887765543222


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .+ +... ..      ....... .... .+......+.+||.+||..||++|||++|+++||||
T Consensus       256 ~~-~~~~-~~------~~~~~~~-~~~l-~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         256 LF-KKME-LP------QGQKRKV-KERL-KPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             hh-hhcc-CC------Cccchhh-HHhc-ccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            11 1100 00      0000000 0100 111234577899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=1.8e-30  Score=240.13  Aligned_cols=220  Identities=21%  Similarity=0.304  Sum_probs=141.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| +++|.+++.......++...++.++.|++.||+|||++ ||+||||||+||++..                  
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~iiH~dlkp~Nil~~~------------------  136 (327)
T cd08227          76 VVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILISV------------------  136 (327)
T ss_pred             EEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCChhhEEEec------------------
Confidence            589999 89999999876545689999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...+++.||+.......         
T Consensus       137 ------------------------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~  162 (327)
T cd08227         137 ------------------------------------------------------DGKVYLSGLRSNLSMINHGQRLRVVH  162 (327)
T ss_pred             ------------------------------------------------------CCcEEEcccchhhccccccccccccc
Confidence                                                                  23566667664322110         


Q ss_pred             -ccccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          151 -QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                       ......++..|+|||++.+  ..++.++||||+||++|+|++|..||....      ...  ..+....+.+|..+...
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~--~~~~~~~~~~~~~~~~~  234 (327)
T cd08227         163 DFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP------ATQ--MLLEKLNGTVPCLLDTT  234 (327)
T ss_pred             cccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcc------hhH--HHHHHhcCCcccccccc
Confidence             1112345667999999986  468999999999999999999999997652      111  11222223333211100


Q ss_pred             CCCCcccc------CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          228 GAQSKDYF------DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       228 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ........      .........................+.....+..+.+||++||++||++|||++|+++||||+...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~  314 (327)
T cd08227         235 TIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  314 (327)
T ss_pred             chhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcc
Confidence            00000000      000000000000000000000000112334467899999999999999999999999999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=3.2e-30  Score=240.15  Aligned_cols=210  Identities=30%  Similarity=0.510  Sum_probs=160.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|+||+|.+|.+++...   .+++..+..++.|++.||+|||+ .|++|+||+|+||++.                    
T Consensus        97 lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~-~gi~H~dlkp~Nill~--------------------  152 (343)
T cd07851          97 LVTHLMGADLNNIVKCQ---KLSDDHIQFLVYQILRGLKYIHS-AGIIHRDLKPSNIAVN--------------------  152 (343)
T ss_pred             EEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH-CCeecCCCCHHHeEEC--------------------
Confidence            58999999999998763   48999999999999999999999 5999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........++..
T Consensus       153 ----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~  180 (343)
T cd07851         153 ----------------------------------------------------EDCELKILDFGLARHTDDEMTGYVATRW  180 (343)
T ss_pred             ----------------------------------------------------CCCCEEEccccccccccccccCCccccc
Confidence                                                                2457999999998766555455567888


Q ss_pred             CcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          161 YRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       161 y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      |+|||.+.+. .++.++|+|||||++|++++|+.||...      +....+..+.+..+.+++.+...+.....     .
T Consensus       181 y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~  249 (343)
T cd07851         181 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGS------DHIDQLKRIMNLVGTPDEELLQKISSESA-----R  249 (343)
T ss_pred             ccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHhcCCCCHHHHhhccchhH-----H
Confidence            9999998764 6889999999999999999999999765      45667788888888888777654432110     0


Q ss_pred             ch-hhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          240 DL-KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      .+ ..........+...       ....+..+.+||++||..||++|||+.||++||||.......
T Consensus       250 ~~~~~~~~~~~~~~~~~-------~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~~  308 (343)
T cd07851         250 NYIQSLPQMPKKDFKEV-------FSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDPE  308 (343)
T ss_pred             HHHHhccccCCCCHHHH-------hccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCCc
Confidence            00 00000000001111       112356899999999999999999999999999999765544

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.97  E-value=4.1e-30  Score=235.82  Aligned_cols=223  Identities=27%  Similarity=0.416  Sum_probs=155.4

Q ss_pred             CcccccchhHHHHHHhhcC---CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~---~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||++.+|.+++.....   ..++...++.++.||+.||.|||++ |++||||||+||++..+.              
T Consensus        81 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~h~dlkp~Nil~~~~~--------------  145 (316)
T cd07842          81 LLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN-WVLHRDLKPANILVMGEG--------------  145 (316)
T ss_pred             EEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC-CEeeCCCCHHHEEEcCCC--------------
Confidence            5899998788888765432   2588999999999999999999995 999999999999994310              


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----  152 (329)
                                                                            .....++|+|||.+.......     
T Consensus       146 ------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~  171 (316)
T cd07842         146 ------------------------------------------------------PERGVVKIGDLGLARLFNAPLKPLAD  171 (316)
T ss_pred             ------------------------------------------------------CccceEEECCCccccccCCCcccccc
Confidence                                                                  124579999999986544321     


Q ss_pred             -ccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC---CCchHHHHHHHHHhCCCcHHHHhc
Q 020248          153 -AEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF---CEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       153 -~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                       ....++..|+|||.+.+. .++.++|+|||||++|+|++|..||........   ......+..+.+.++..++..+..
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  251 (316)
T cd07842         172 LDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPD  251 (316)
T ss_pred             cCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHH
Confidence             223557789999998774 588999999999999999999999986542210   112356777788888776655543


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ......+........ ..............    .....+..+.+++++||++||++|||+.|+++||||
T Consensus       252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         252 IKKMPEYDTLMKDFK-TKTYPSNSLAKWME----KHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             Hhhcccchhhhhhcc-CCCCCCccHHHHHH----hccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            322222211100000 00000001111111    112446789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.97  E-value=2.4e-30  Score=234.80  Aligned_cols=189  Identities=28%  Similarity=0.384  Sum_probs=147.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||++ ||+||||||+||++.                   
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~iiH~dikp~Nili~-------------------  136 (285)
T cd05632          77 LVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE-NTVYRDLKPENILLD-------------------  136 (285)
T ss_pred             EEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCCHHHEEEC-------------------
Confidence            589999 88999888765445699999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       137 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~g  163 (285)
T cd05632         137 -----------------------------------------------------DYGHIRISDLGLAVKIPEGESIRGRVG  163 (285)
T ss_pred             -----------------------------------------------------CCCCEEEecCCcceecCCCCcccCCCC
Confidence                                                                 245799999998855432  2234567


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||....      +......+......                  
T Consensus       164 ~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~------~~~~~~~~~~~~~~------------------  219 (285)
T cd05632         164 TVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRK------EKVKREEVDRRVLE------------------  219 (285)
T ss_pred             CcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhhhc------------------
Confidence            899999999998889999999999999999999999997652      21112222111100                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~  306 (329)
                                          .....+...+..+.+|+.+||+.||++|+|     +.++++|+||........+
T Consensus       220 --------------------~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (285)
T cd05632         220 --------------------TEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNMNFKRLE  273 (285)
T ss_pred             --------------------cccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcCCHHHHh
Confidence                                000112334567899999999999999999     8999999999998666443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.97  E-value=4.9e-31  Score=243.38  Aligned_cols=180  Identities=25%  Similarity=0.350  Sum_probs=142.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|...+...  ..+++..+..++.||+.||.|||+. ||+||||||+||++.                   
T Consensus        73 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-~ivH~Dlkp~NIll~-------------------  130 (321)
T cd05603          73 FVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSL-NIIYRDLKPENILLD-------------------  130 (321)
T ss_pred             EEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeEEC-------------------
Confidence            589999 88998888764  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       131 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (321)
T cd05603         131 -----------------------------------------------------SQGHVVLTDFGLCKEGVEPEETTSTFC  157 (321)
T ss_pred             -----------------------------------------------------CCCCEEEccCCCCccCCCCCCcccccc
Confidence                                                                 34579999999875422   1223456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||....      .......+                       
T Consensus       158 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i-----------------------  208 (321)
T cd05603         158 GTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD------VSQMYDNI-----------------------  208 (321)
T ss_pred             CCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC------HHHHHHHH-----------------------
Confidence            7899999999998889999999999999999999999997641      11111111                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH----HHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell~hpwf~~~~~~  303 (329)
                                         .......+...+..+.++|.+||+.||.+|+++    .|+++|+||....+.
T Consensus       209 -------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~~~~  260 (321)
T cd05603         209 -------------------LHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWD  260 (321)
T ss_pred             -------------------hcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCCCHH
Confidence                               111112333446688999999999999999976    499999999876554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=3.1e-30  Score=248.30  Aligned_cols=216  Identities=24%  Similarity=0.311  Sum_probs=146.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||+++++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||++..                   
T Consensus       237 lv~e~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDLKP~NILl~~-------------------  295 (461)
T PHA03211        237 LVLPKYRSDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHGE-GIIHRDIKTENVLVNG-------------------  295 (461)
T ss_pred             EEEEccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEEECcCCHHHEEECC-------------------
Confidence            578999778988887543 3589999999999999999999995 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                           ...++|+|||.+......     ....
T Consensus       296 -----------------------------------------------------~~~vkL~DFGla~~~~~~~~~~~~~~~  322 (461)
T PHA03211        296 -----------------------------------------------------PEDICLGDFGAACFARGSWSTPFHYGI  322 (461)
T ss_pred             -----------------------------------------------------CCCEEEcccCCceeccccccccccccc
Confidence                                                                 456899999998654321     1234


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC-CCchHHHHHHHHHhCCCcHHHHhcC--CCCc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF-CEDEDHLALMMELIGKMPRKIAIGG--AQSK  232 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~l~~i~~~~g~~p~~~~~~~--~~~~  232 (329)
                      .||..|+|||++.+..++.++|||||||++|||++|..++......+. .....++..+++..+.....+....  ....
T Consensus       323 ~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~  402 (461)
T PHA03211        323 AGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVS  402 (461)
T ss_pred             CCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHH
Confidence            689999999999999999999999999999999998876654432211 2234455666555443222111000  0000


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      .+.......... ......+.+.        ......+.+||.+||++||.+|||+.|+|+||||+.
T Consensus       403 ~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        403 QYRHRAARNRRP-AYTRPAWTRY--------YKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             HHHhhhhcccCC-ccCCcchhhh--------ccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence            000000000000 0000000000        012347889999999999999999999999999974

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.97  E-value=6.8e-31  Score=247.64  Aligned_cols=185  Identities=24%  Similarity=0.378  Sum_probs=140.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..++...++.++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        78 lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill~-------------------  135 (376)
T cd05598          78 FVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVHKM-GFIHRDIKPDNILID-------------------  135 (376)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHEEEC-------------------
Confidence            589999 99999999765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                           ....++|+|||++.....         
T Consensus       136 -----------------------------------------------------~~~~ikL~DFG~a~~~~~~~~~~~~~~  162 (376)
T cd05598         136 -----------------------------------------------------RDGHIKLTDFGLCTGFRWTHDSKYYQK  162 (376)
T ss_pred             -----------------------------------------------------CCCCEEEEeCCCCcccccccccccccc
Confidence                                                                 245789999998632110         


Q ss_pred             -------------------------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCc
Q 020248          151 -------------------------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM  193 (329)
Q Consensus       151 -------------------------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~  193 (329)
                                                           .....+||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~  242 (376)
T cd05598         163 GDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQP  242 (376)
T ss_pred             ccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCC
Confidence                                                 0113468999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHH
Q 020248          194 LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEF  273 (329)
Q Consensus       194 pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl  273 (329)
                      ||....      .......+.......                                      ..+.....+..+.+|
T Consensus       243 Pf~~~~------~~~~~~~i~~~~~~~--------------------------------------~~~~~~~~s~~~~~l  278 (376)
T cd05598         243 PFLADT------PAETQLKVINWETTL--------------------------------------HIPSQAKLSREASDL  278 (376)
T ss_pred             CCCCCC------HHHHHHHHhccCccc--------------------------------------cCCCCCCCCHHHHHH
Confidence            997652      222211111000000                                      000011235678899


Q ss_pred             HhhccCCCCCCCc---CHHHHhcCCCcCCCCCChh
Q 020248          274 LVPLLDFTPEKRP---TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       274 l~~~L~~dP~~R~---ta~ell~hpwf~~~~~~~~  305 (329)
                      |.+|+ .+|++|+   |+.|+++||||...++...
T Consensus       279 i~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~~~~  312 (376)
T cd05598         279 ILRLC-CGAEDRLGKNGADEIKAHPFFKGIDFASL  312 (376)
T ss_pred             HHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCHHHH
Confidence            99976 4999999   9999999999998765444

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-30  Score=224.58  Aligned_cols=183  Identities=27%  Similarity=0.406  Sum_probs=151.4

Q ss_pred             cccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            2 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      .||.|+.+++.++...+ .++++..+-++...++.||.||-.++||+|||+||+|||+                      
T Consensus       169 cMelMs~C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILl----------------------  225 (391)
T KOG0983|consen  169 CMELMSTCAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILL----------------------  225 (391)
T ss_pred             HHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEE----------------------
Confidence            58999999999998876 5789999999999999999999998899999999999999                      


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCCC
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQTR  159 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~~  159 (329)
                                                                        +....+||+|||.+-++..  .+++..|.+
T Consensus       226 --------------------------------------------------De~GniKlCDFGIsGrlvdSkAhtrsAGC~  255 (391)
T KOG0983|consen  226 --------------------------------------------------DERGNIKLCDFGISGRLVDSKAHTRSAGCA  255 (391)
T ss_pred             --------------------------------------------------ccCCCEEeecccccceeecccccccccCCc
Confidence                                                              4467899999999966553  456678899


Q ss_pred             CCcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          160 QYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       160 ~y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      .|||||.+.-   ..|..++||||||++++||+||.+||.+..     .+.+.+..+..   ..|+.+.           
T Consensus       256 ~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~-----tdFe~ltkvln---~ePP~L~-----------  316 (391)
T KOG0983|consen  256 AYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK-----TDFEVLTKVLN---EEPPLLP-----------  316 (391)
T ss_pred             cccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC-----ccHHHHHHHHh---cCCCCCC-----------
Confidence            9999999864   368999999999999999999999999863     34555555433   2221110           


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                               -...++..|.+|+..||+.|+.+||.-.++|+|||+....
T Consensus       317 -------------------------~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~ye  356 (391)
T KOG0983|consen  317 -------------------------GHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKRYE  356 (391)
T ss_pred             -------------------------cccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceeecc
Confidence                                     1123578999999999999999999999999999998654

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=2.1e-30  Score=234.48  Aligned_cols=186  Identities=26%  Similarity=0.390  Sum_probs=143.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.|++.||.|||++ |++|+||||+||++.                   
T Consensus        74 lv~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dikp~Nil~~-------------------  131 (279)
T cd05633          74 FILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHNR-FVVYRDLKPANILLD-------------------  131 (279)
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCCCCCHHHEEEC-------------------
Confidence            589999 89999988765  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......++
T Consensus       132 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  158 (279)
T cd05633         132 -----------------------------------------------------EHGHVRISDLGLACDFSKKKPHASVGT  158 (279)
T ss_pred             -----------------------------------------------------CCCCEEEccCCcceeccccCccCcCCC
Confidence                                                                 245789999999854432 22234678


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ..|+|||.+.. ..++.++|+||+||++|+|++|..||.....    .....+..+.                       
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~----~~~~~~~~~~-----------------------  211 (279)
T cd05633         159 HGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT----KDKHEIDRMT-----------------------  211 (279)
T ss_pred             cCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC----cCHHHHHHHh-----------------------
Confidence            89999999874 5689999999999999999999999975421    0111111110                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                        .......+...+..+.+||.+||..||++|+     |++|+++||||++.++....
T Consensus       212 ------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~~~~~~  267 (279)
T cd05633         212 ------------------LTVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGIDWQQVY  267 (279)
T ss_pred             ------------------hcCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCCHhHHh
Confidence                              0001112334467899999999999999999     69999999999998866543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3e-30  Score=226.34  Aligned_cols=212  Identities=25%  Similarity=0.413  Sum_probs=161.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||-| |++|.+.+.....  +++.++..+...|+.||.|||.+ ||.|||+||+|||-..+                 
T Consensus       153 LVfEKm~GGplLshI~~~~~--F~E~EAs~vvkdia~aLdFlH~k-gIAHRDlKPENiLC~~p-----------------  212 (463)
T KOG0607|consen  153 LVFEKMRGGPLLSHIQKRKH--FNEREASRVVKDIASALDFLHTK-GIAHRDLKPENILCESP-----------------  212 (463)
T ss_pred             EEEecccCchHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHhhc-CcccccCCccceeecCC-----------------
Confidence            699999 9999998888754  99999999999999999999997 99999999999998543                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc--cccc-------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC--RANK-------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~--~~~~-------  150 (329)
                                                                          +.-.-|||+||.+..  ..+.       
T Consensus       213 ----------------------------------------------------n~vsPvKiCDfDLgSg~k~~~~~spast  240 (463)
T KOG0607|consen  213 ----------------------------------------------------NKVSPVKICDFDLGSGIKLNNDCSPAST  240 (463)
T ss_pred             ----------------------------------------------------CCcCceeeeccccccccccCCCCCCCCC
Confidence                                                                223458999997662  2221       


Q ss_pred             -ccccCCCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          151 -QFAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                       ...+.+|+..|||||+...     .-|..++|.||||+|+|.|+.|++||.+.-+.                       
T Consensus       241 P~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~-----------------------  297 (463)
T KOG0607|consen  241 PELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGA-----------------------  297 (463)
T ss_pred             ccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCC-----------------------
Confidence             2344577888999998642     24889999999999999999999999987532                       


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChh----hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET----DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                             +-.|++...+..+..   --++.+..+.|.+|+.    .+.+..|+++.+|..|+..|.+|..+++|||+...
T Consensus       298 -------dCGWdrGe~Cr~CQ~---~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~  367 (463)
T KOG0607|consen  298 -------DCGWDRGEVCRVCQN---KLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRC  367 (463)
T ss_pred             -------cCCccCCCccHHHHH---HHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCcccccc
Confidence                   223344443333321   1256677777777764    46789999999999999999999999999999988


Q ss_pred             CCChhhhhcCCCcccccc
Q 020248          301 NSTRDETKNKSNVEKVDV  318 (329)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~  318 (329)
                      ..+ +-.....++.+.++
T Consensus       368 ~~e-kalptp~v~~r~~s  384 (463)
T KOG0607|consen  368 APE-KALPTPQVLQRNSS  384 (463)
T ss_pred             chh-ccCCCCcccccCcc
Confidence            765 33333334444443

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=7.8e-30  Score=232.33  Aligned_cols=210  Identities=31%  Similarity=0.470  Sum_probs=156.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..+++..+..++.||+.||.|||++ |++|+||+|+||++.                    
T Consensus        79 lv~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nill~--------------------  136 (298)
T cd07841          79 LVFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSN-WILHRDLKPNNLLIA--------------------  136 (298)
T ss_pred             EEEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecCCChhhEEEc--------------------
Confidence            589999889999987653 3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                          ....++|+|||.+......   .....+
T Consensus       137 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  164 (298)
T cd07841         137 ----------------------------------------------------SDGVLKLADFGLARSFGSPNRKMTHQVV  164 (298)
T ss_pred             ----------------------------------------------------CCCCEEEccceeeeeccCCCcccccccc
Confidence                                                                2457999999998655432   223345


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+ ..++.++|+||+||++|+|++|.++|...      .+...+..+.+.++.+...++........+..
T Consensus       165 ~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (298)
T cd07841         165 TRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGD------SDIDQLGKIFEALGTPTEENWPGVTSLPDYVE  238 (298)
T ss_pred             ceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCC------ccHHHHHHHHHHcCCCchhhhhhccccccccc
Confidence            678999999865 46789999999999999999998888765      34556677777777666655543332222111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      ....       ........       ....+..+.+||.+||++||++|||+.|+++||||+....+.
T Consensus       239 ~~~~-------~~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~  292 (298)
T cd07841         239 FKPF-------PPTPLKQI-------FPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPT  292 (298)
T ss_pred             cccc-------CCcchhhh-------cccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCCC
Confidence            0000       00001111       123367889999999999999999999999999999876544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=5.2e-30  Score=231.71  Aligned_cols=206  Identities=30%  Similarity=0.548  Sum_probs=153.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.... ..++...+..++.||+.||.|||+. |++|+||||+||++.                    
T Consensus        76 ~v~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~~~--------------------  133 (286)
T cd07832          76 LVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHAN-GIMHRDLKPANLLIS--------------------  133 (286)
T ss_pred             EEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCHHHEEEc--------------------
Confidence            589999999999987644 5689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~~  156 (329)
                                                                          ....++|+|||.+......    .....
T Consensus       134 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  161 (286)
T cd07832         134 ----------------------------------------------------ADGVLKIADFGLARLFSEEEPRLYSHQV  161 (286)
T ss_pred             ----------------------------------------------------CCCcEEEeeeeecccccCCCCCcccccc
Confidence                                                                2457899999998655432    23456


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+. .++.++||||+||++|+|++|.++|.+.      .+...+..+...++.+....+........+-
T Consensus       162 ~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T cd07832         162 ATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGE------NDIEQLAIVFRTLGTPNEETWPGLTSLPDYN  235 (286)
T ss_pred             CcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCC------CHHHHHHHHHHHcCCCChHHHhhccCcchhh
Confidence            78899999998764 4689999999999999999998888765      4566777778877776554443222111110


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                      .    ...... ........       ....+..+.+|+++||..||++|||++++++||||.
T Consensus       236 ~----~~~~~~-~~~~~~~~-------~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         236 K----ITFPES-KPIPLEEI-------FPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             c----ccCCCC-CcchHHHh-------CCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            0    000000 00001111       122357899999999999999999999999999995

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=4.9e-30  Score=230.36  Aligned_cols=178  Identities=33%  Similarity=0.511  Sum_probs=137.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.......+++..+..++.|++.|++|||++ +|+|+||||+||++.                   
T Consensus        86 iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~-~ivh~dl~~~nili~-------------------  145 (272)
T cd06637          86 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLLT-------------------  145 (272)
T ss_pred             EEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHEEEC-------------------
Confidence            589999 78999999876555689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       146 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  172 (272)
T cd06637         146 -----------------------------------------------------ENAEVKLVDFGVSAQLDRTVGRRNTFI  172 (272)
T ss_pred             -----------------------------------------------------CCCCEEEccCCCceecccccccCCccc
Confidence                                                                 245699999999865432   223356


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++..|+|||++.     ...++.++|+||+||++|+|++|..||....      .......+..   .           .
T Consensus       173 g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~------~~~~~~~~~~---~-----------~  232 (272)
T cd06637         173 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH------PMRALFLIPR---N-----------P  232 (272)
T ss_pred             ccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC------HHHHHHHHhc---C-----------C
Confidence            788999999986     3358889999999999999999999996541      1111110000   0           0


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                .........+..+.+||.+||..+|++|||+.|++.||||
T Consensus       233 --------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         233 --------------------------APRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             --------------------------CCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence                                      0000111234578999999999999999999999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1e-29  Score=231.10  Aligned_cols=206  Identities=31%  Similarity=0.468  Sum_probs=153.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..+++..+..++.||+.||.|||++ |++|+||||+||++.                    
T Consensus        83 lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili~--------------------  140 (293)
T cd07843          83 MVMEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDN-WILHRDLKTSNLLLN--------------------  140 (293)
T ss_pred             EEehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEEC--------------------
Confidence            589999779999887654 3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                          ....++|+|||.+......   .....+
T Consensus       141 ----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~  168 (293)
T cd07843         141 ----------------------------------------------------NRGILKICDFGLAREYGSPLKPYTQLVV  168 (293)
T ss_pred             ----------------------------------------------------CCCcEEEeecCceeeccCCccccccccc
Confidence                                                                2457899999988655432   223456


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+||+||++|+|++|..||...      .....+..+....+.++...+..+........
T Consensus       169 ~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (293)
T cd07843         169 TLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGK------SEIDQLNKIFKLLGTPTEKIWPGFSELPGAKK  242 (293)
T ss_pred             cccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCchHHHHHhhccchhcc
Confidence            7789999998765 4689999999999999999999999876      45667777777788766655543322111110


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChh-hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .....     ..   ...+   ...++.. .+..+.+||++||+.+|++|||+.|+++||||
T Consensus       243 ~~~~~-----~~---~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         243 KTFTK-----YP---YNQL---RKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             ccccc-----cc---chhh---hccccccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            00000     00   0000   0112222 46788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=5.7e-30  Score=231.51  Aligned_cols=205  Identities=28%  Similarity=0.493  Sum_probs=153.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.......++...+..++.|++.||+|||+. |++|+||+|+||++.                    
T Consensus        76 ~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-~i~H~~l~p~nill~--------------------  134 (284)
T cd07860          76 LVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLIN--------------------  134 (284)
T ss_pred             EEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC--------------------
Confidence            58999977899988776556689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       135 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  162 (284)
T cd07860         135 ----------------------------------------------------TEGAIKLADFGLARAFGVPVRTYTHEVV  162 (284)
T ss_pred             ----------------------------------------------------CCCCEEEeeccchhhcccCccccccccc
Confidence                                                                245789999998854432   2233345


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+.. ++.++|+|||||++|+|++|..||...      +....+..+.+.+|..+..++........+..
T Consensus       163 ~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07860         163 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD------SEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKP  236 (284)
T ss_pred             cccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHhCCCChhhhhhhhHHHHHHh
Confidence            77899999887654 688999999999999999999999765      45667777788888777655543222211111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ......      ......+       ....+..+.+||.+||+.||++|||+.|+++||||
T Consensus       237 ~~~~~~------~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         237 SFPKWA------RQDFSKV-------VPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             hccccc------ccCHHHH-------cccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            111000      0001111       11235678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-30  Score=243.39  Aligned_cols=184  Identities=28%  Similarity=0.465  Sum_probs=144.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +..||| |+-+..++..- +++|.++++..+|+|++.||.|||++ +|||||||..||||+.                  
T Consensus       106 iliEFC~GGAVDaimlEL-~r~LtE~QIqvvc~q~ldALn~LHs~-~iIHRDLKAGNiL~Tl------------------  165 (1187)
T KOG0579|consen  106 ILIEFCGGGAVDAIMLEL-GRVLTEDQIQVVCYQVLDALNWLHSQ-NIIHRDLKAGNILLTL------------------  165 (1187)
T ss_pred             EEEeecCCchHhHHHHHh-ccccchHHHHHHHHHHHHHHHHHhhc-chhhhhccccceEEEe------------------
Confidence            356999 66666666553 47799999999999999999999996 9999999999999955                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                            .+.++|+|||.+....   ....+++
T Consensus       166 ------------------------------------------------------dGdirLADFGVSAKn~~t~qkRDsFI  191 (1187)
T KOG0579|consen  166 ------------------------------------------------------DGDIRLADFGVSAKNKSTRQKRDSFI  191 (1187)
T ss_pred             ------------------------------------------------------cCcEeeecccccccchhHHhhhcccc
Confidence                                                                  4679999999985443   3456789


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      |||||||||+..     ..+|..++||||||+++-+|.-+.+|....      +...++-.|..   .-|+-+       
T Consensus       192 GTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel------npMRVllKiaK---SePPTL-------  255 (1187)
T KOG0579|consen  192 GTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL------NPMRVLLKIAK---SEPPTL-------  255 (1187)
T ss_pred             CCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc------chHHHHHHHhh---cCCCcc-------
Confidence            999999999853     568999999999999999999999988655      23333333321   111100       


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                   --+..-+..|.|||.+||..||..||++++|++||||+...+.
T Consensus       256 -----------------------------lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  256 -----------------------------LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPSN  298 (1187)
T ss_pred             -----------------------------cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCcc
Confidence                                         0122225689999999999999999999999999999977655

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=7.1e-30  Score=236.89  Aligned_cols=211  Identities=29%  Similarity=0.507  Sum_probs=160.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...  ..++...+..++.||+.||.|||+. |++||||||+||++.                    
T Consensus        85 lv~e~~~~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~Nil~~--------------------  141 (334)
T cd07855          85 VVMDLMESDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIHSA-NVIHRDLKPSNLLVN--------------------  141 (334)
T ss_pred             EEEehhhhhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc--------------------
Confidence            58999988999988765  3489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------c
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------A  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------~  153 (329)
                                                                          ....++|+|||.+.......       .
T Consensus       142 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  169 (334)
T cd07855         142 ----------------------------------------------------EDCELRIGDFGMARGLSSSPTEHKYFMT  169 (334)
T ss_pred             ----------------------------------------------------CCCcEEecccccceeecccCcCCCcccc
Confidence                                                                34579999999985543211       2


Q ss_pred             cCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+ ..++.++|+||+||++|+|++|+.||...      +....+..+...+|.+|..+........
T Consensus       170 ~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  243 (334)
T cd07855         170 EYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGK------NYVHQLKLILSVLGSPSEEVLNRIGSDR  243 (334)
T ss_pred             cccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCC------ChHHHHHHHHHHhCCChhHhhhhhchhh
Confidence            3367788999999876 45899999999999999999999999876      4667788888999988887764332111


Q ss_pred             --cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          233 --DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                        .+++..+....      .....+       ....+..+.+||++||+++|++|||++++++||||........
T Consensus       244 ~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~~  305 (334)
T cd07855         244 VRKYIQNLPRKQP------VPWSKI-------FPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPDD  305 (334)
T ss_pred             HHHHHhhcccCCC------CCHHHH-------cccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCCcc
Confidence              11111000000      000111       1223678999999999999999999999999999997765554

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=1.4e-29  Score=228.49  Aligned_cols=203  Identities=32%  Similarity=0.507  Sum_probs=153.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.|++.||.|||++ |++||||+|+||++                     
T Consensus        77 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~p~ni~l---------------------  133 (282)
T cd07831          77 LVFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRN-GIFHRDIKPENILI---------------------  133 (282)
T ss_pred             EEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEE---------------------
Confidence            589999778888877643 3589999999999999999999995 99999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                         .. ..++|+|||.+.....  ......++
T Consensus       134 ---------------------------------------------------~~-~~~kl~dfg~~~~~~~~~~~~~~~~~  161 (282)
T cd07831         134 ---------------------------------------------------KD-DILKLADFGSCRGIYSKPPYTEYIST  161 (282)
T ss_pred             ---------------------------------------------------cC-CCeEEEecccccccccCCCcCCCCCC
Confidence                                                               22 5789999999865432  22334568


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ..|+|||.+.. ..++.++|+||+||++|+|++|..||.+.      +..+.+..+...+|..++.+..........   
T Consensus       162 ~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  232 (282)
T cd07831         162 RWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGT------NELDQIAKIHDVLGTPDAEVLKKFRKSRHM---  232 (282)
T ss_pred             cccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCC------CHHHHHHHHHHHcCCCCHHHHHhhcccccc---
Confidence            89999998765 45789999999999999999999999876      466778888888998888774332221110   


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ......   .........       ....+..+.+||.+||..+|++|||+.++++||||
T Consensus       233 ~~~~~~---~~~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         233 NYNFPS---KKGTGLRKL-------LPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             cccCcc---cccccHHHH-------cccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            000000   000001111       12347899999999999999999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=7.8e-30  Score=231.66  Aligned_cols=208  Identities=26%  Similarity=0.420  Sum_probs=151.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+.+.... ..++...++.++.|++.||.|||+. |++|+||||+||+++                    
T Consensus        80 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dlkp~Nil~~--------------------  137 (291)
T cd07870          80 FVFEYMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQ-HILHRDLKPQNLLIS--------------------  137 (291)
T ss_pred             EEEecccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChHHEEEc--------------------
Confidence            589999878887776543 3578888999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       138 ----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~  165 (291)
T cd07870         138 ----------------------------------------------------YLGELKLADFGLARAKSIPSQTYSSEVV  165 (291)
T ss_pred             ----------------------------------------------------CCCcEEEeccccccccCCCCCCCCCccc
Confidence                                                                245799999998854332   2233356


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+|||||++|+|++|..||....     +....+..+...+|.+++.+.........+..
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (291)
T cd07870         166 TLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS-----DVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKP  240 (291)
T ss_pred             cccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch-----hHHHHHHHHHHHcCCCChhhhhhhhhcccccc
Confidence            7889999998764 57899999999999999999999997653     34567777888888777665543332222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .........     ...... .    ....+..+.+|+++||..||++|||+.|++.||||
T Consensus       241 ~~~~~~~~~-----~~~~~~-~----~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         241 EWFLPCKPQ-----QLRVVW-K----RLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             hhccccCCc-----chhhhc-c----ccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            111000000     001110 0    01125678899999999999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=5.3e-30  Score=236.97  Aligned_cols=217  Identities=32%  Similarity=0.502  Sum_probs=165.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++....  .+++..+..++.||+.||+|||+. |++||||||+||++.                    
T Consensus        81 lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~-gi~H~dlkp~nili~--------------------  137 (330)
T cd07834          81 IVTELMETDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSA-NVIHRDLKPSNILVN--------------------  137 (330)
T ss_pred             EEecchhhhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc--------------------
Confidence            589999889999887653  589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~~  154 (329)
                                                                          ....++|+|||.+......      ...
T Consensus       138 ----------------------------------------------------~~~~~~L~dfg~~~~~~~~~~~~~~~~~  165 (330)
T cd07834         138 ----------------------------------------------------SNCDLKICDFGLARGVDPDEDEKGFLTE  165 (330)
T ss_pred             ----------------------------------------------------CCCCEEEcccCceEeecccccccccccc
Confidence                                                                2457999999998655432      233


Q ss_pred             CCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC--
Q 020248          155 EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS--  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--  231 (329)
                      ..++..|+|||.+.+. .++.++|+||+||++|+|++|..||...      +....+..+...+|.+++..+......  
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  239 (330)
T cd07834         166 YVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGR------DYIDQLNLIVEVLGTPSEEDLKFITSEKA  239 (330)
T ss_pred             cccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCC------CHHHHHHHHHHhcCCCChhHhhhccccch
Confidence            4567889999999888 7999999999999999999999999877      467778888888888877665421111  


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS  311 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~~  311 (329)
                      ..+....+...      ......       .....+..+.+||++||+++|++|||+.++++||||........+.-.+.
T Consensus       240 ~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~~~~~~~~  306 (330)
T cd07834         240 RNYLKSLPKKP------KKPLSK-------LFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPEDEPVAKP  306 (330)
T ss_pred             hhHHhhcccCC------cchhHH-------hcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcccccCCCCCC
Confidence            11111000000      000011       11224678999999999999999999999999999998776655555444

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=239.77  Aligned_cols=180  Identities=27%  Similarity=0.419  Sum_probs=153.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||+|| |++|.+.+...++..++++.+..++.|++.|+.|||++ +|.|||||+.||+++.                  
T Consensus        81 Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~-~iLHRDlK~~Nifltk------------------  141 (426)
T KOG0589|consen   81 IVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN-RVLHRDLKCANIFLTK------------------  141 (426)
T ss_pred             EEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh-hhhcccchhhhhhccc------------------
Confidence            689999 99999999998877799999999999999999999986 9999999999999944                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...|+|+|||+|......   ..+.+
T Consensus       142 ------------------------------------------------------~~~VkLgDfGlaK~l~~~~~~a~tvv  167 (426)
T KOG0589|consen  142 ------------------------------------------------------DKKVKLGDFGLAKILNPEDSLASTVV  167 (426)
T ss_pred             ------------------------------------------------------cCceeecchhhhhhcCCchhhhheec
Confidence                                                                  456899999999776643   45678


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||++|+.||++.+.+|+.++|||||||++|||.+-+..|...      +-...+..|.+...                  
T Consensus       168 GTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~------~m~~Li~ki~~~~~------------------  223 (426)
T KOG0589|consen  168 GTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS------NMSELILKINRGLY------------------  223 (426)
T ss_pred             CCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc------chHHHHHHHhhccC------------------
Confidence            999999999999999999999999999999999999999876      33334443433221                  


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                             .+++...+.++..|+..||..+|+.||++.++|.+|.+...
T Consensus       224 -----------------------~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l~~~  264 (426)
T KOG0589|consen  224 -----------------------SPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRRPHLLRY  264 (426)
T ss_pred             -----------------------CCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhChhhhhH
Confidence                                   12455567899999999999999999999999999887743

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-29  Score=229.73  Aligned_cols=208  Identities=29%  Similarity=0.515  Sum_probs=151.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.|++.||.|||+. |++|+||||+||++.                    
T Consensus        80 lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~dl~p~nil~~--------------------  137 (291)
T cd07844          80 LVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQR-RVLHRDLKPQNLLIS--------------------  137 (291)
T ss_pred             EEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccCCHHHEEEc--------------------
Confidence            589999779999887653 3689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       138 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  165 (291)
T cd07844         138 ----------------------------------------------------ERGELKLADFGLARAKSVPSKTYSNEVV  165 (291)
T ss_pred             ----------------------------------------------------CCCCEEECccccccccCCCCcccccccc
Confidence                                                                245799999998854432   1122345


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+ ..++.++|+||+||++|+|++|..||....     .....+..+.+.++.+.+..+........+..
T Consensus       166 ~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (291)
T cd07844         166 TLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGST-----DVEDQLHKIFRVLGTPTEETWPGVSSNPEFKP  240 (291)
T ss_pred             ccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCc-----cHHHHHHHHHHhcCCCChhhhhhhhhcccccc
Confidence            778999999876 458999999999999999999999997652     24566777778888766665543332222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .......        ...+.......  .....+.+++++||+++|++|||+.|+++||||
T Consensus       241 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         241 YSFPFYP--------PRPLINHAPRL--DRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             ccccccC--------ChhHHHhCcCC--CCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            1111100        00010000001  113678899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=7.4e-30  Score=236.67  Aligned_cols=191  Identities=21%  Similarity=0.333  Sum_probs=140.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..+++..++.++.||+.||+|||++ ||+||||||+||++.                   
T Consensus        78 lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill~-------------------  136 (331)
T cd05597          78 LVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQL-GYVHRDIKPDNVLLD-------------------  136 (331)
T ss_pred             EEEecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeEECCCCHHHEEEC-------------------
Confidence            589999 999999997632 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       137 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  163 (331)
T cd05597         137 -----------------------------------------------------KNGHIRLADFGSCLRLLADGTVQSNVA  163 (331)
T ss_pred             -----------------------------------------------------CCCCEEEEECCceeecCCCCCccccce
Confidence                                                                 2457999999998554321    1224


Q ss_pred             CCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          156 IQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .|++.|+|||++..     ..++.++||||+||++|+|++|..||....      .......+.......+         
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~~---------  228 (331)
T cd05597         164 VGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHKEHFQ---------  228 (331)
T ss_pred             eccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCC------HHHHHHHHHcCCCccc---------
Confidence            68999999999873     357889999999999999999999997541      2222222211000000         


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChhhhh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~~~~  308 (329)
                                                  ........+..+.+||++||..++.+  |+++.++++||||...++......
T Consensus       229 ----------------------------~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~~~~~~~~~  280 (331)
T cd05597         229 ----------------------------FPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGIDWDNIRNS  280 (331)
T ss_pred             ----------------------------CCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCCCHHHHhhC
Confidence                                        00001123568899999998764444  789999999999998876555433

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=7.4e-30  Score=237.13  Aligned_cols=211  Identities=30%  Similarity=0.475  Sum_probs=157.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...  ..+++..+..++.|++.||.|||++ |++|+||||+||+++.                   
T Consensus        86 lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~i~H~dlkp~Nil~~~-------------------  143 (337)
T cd07858          86 IVYELMDTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIHSA-NVLHRDLKPSNLLLNA-------------------  143 (337)
T ss_pred             EEEeCCCCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC-------------------
Confidence            58999988999988765  4599999999999999999999995 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                           ...++|+|||.+......   .....+
T Consensus       144 -----------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~  170 (337)
T cd07858         144 -----------------------------------------------------NCDLKICDFGLARTTSEKGDFMTEYVV  170 (337)
T ss_pred             -----------------------------------------------------CCCEEECcCccccccCCCccccccccc
Confidence                                                                 457999999998655432   223456


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC--ccc
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS--KDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~  234 (329)
                      +..|+|||.+.. ..++.++|+|||||++|+|++|+.||.+.      +....+..+.+.+|..+...+......  ..+
T Consensus       171 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (337)
T cd07858         171 TRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGK------DYVHQLKLITELLGSPSEEDLGFIRNEKARRY  244 (337)
T ss_pred             ccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCC------ChHHHHHHHHHHhCCCChHHhhhcCchhhhHH
Confidence            788999999875 46899999999999999999999999765      456677888888888776554211100  001


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      ....+.      ........       .....+..+.+||++||+.+|++|||+.|+++||||........
T Consensus       245 ~~~~~~------~~~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~~  302 (337)
T cd07858         245 IRSLPY------TPRQSFAR-------LFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSD  302 (337)
T ss_pred             HHhcCc------ccccCHHH-------HcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCccc
Confidence            000000      00000000       11234677899999999999999999999999999987654443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=1.6e-29  Score=224.92  Aligned_cols=177  Identities=31%  Similarity=0.512  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.|+++||+. |++||||||+||+++.                  
T Consensus        77 lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~-~i~H~di~p~nil~~~------------------  137 (257)
T cd08223          77 IVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK-HILHRDLKTQNVFLTR------------------  137 (257)
T ss_pred             EEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCchhEEEec------------------
Confidence            589999 88999999876555689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...++|+|||.+.....   ......
T Consensus       138 ------------------------------------------------------~~~~~l~df~~~~~~~~~~~~~~~~~  163 (257)
T cd08223         138 ------------------------------------------------------TNIIKVGDLGIARVLENQCDMASTLI  163 (257)
T ss_pred             ------------------------------------------------------CCcEEEecccceEEecccCCcccccc
Confidence                                                                  45799999998854432   223345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|+||+||++|+|++|..||...      +.......+.  .|.+|               
T Consensus       164 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~------~~~~~~~~~~--~~~~~---------------  220 (257)
T cd08223         164 GTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAK------DMNSLVYRII--EGKLP---------------  220 (257)
T ss_pred             CCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHH--hcCCC---------------
Confidence            788999999999988999999999999999999999999754      1111111111  01110               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ..+...+..+.+|+.+||..||++|||+.++++||||
T Consensus       221 ------------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         221 ------------------------PMPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             ------------------------CCccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                                    1122345689999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.96  E-value=2.2e-29  Score=231.19  Aligned_cols=218  Identities=24%  Similarity=0.317  Sum_probs=147.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ +++|.+++.......++...+..++.|++.||+|||++ ||+|+||||+||+++.                  
T Consensus        76 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~-~ivH~dlk~~Nili~~------------------  136 (314)
T cd08216          76 VVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK-GFIHRSVKASHILLSG------------------  136 (314)
T ss_pred             EEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCcceEEEec------------------
Confidence            579999 78999999876555689999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...++++|||.+.....         
T Consensus       137 ------------------------------------------------------~~~~kl~d~~~~~~~~~~~~~~~~~~  162 (314)
T cd08216         137 ------------------------------------------------------DGKVVLSGLRYSVSMIKHGKRQRVVH  162 (314)
T ss_pred             ------------------------------------------------------CCceEEecCccceeeccccccccccc
Confidence                                                                  34689999997743321         


Q ss_pred             -ccccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          151 -QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                       ......++..|+|||++..  ..++.++|+||+||++|+|++|..||....      .  ....+....|..+..+...
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~------~--~~~~~~~~~~~~~~~~~~~  234 (314)
T cd08216         163 DFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMP------A--TQMLLEKVRGTVPCLLDKS  234 (314)
T ss_pred             cccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCC------H--HHHHHHHHhccCccccccC
Confidence             1122345668999999876  358899999999999999999999997642      1  1122233344433221110


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      ....     .......... ......................+.+|+++||++||++|||+.++++||||+.....++
T Consensus       235 ~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~~~~~  306 (314)
T cd08216         235 TYPL-----YEDSMSQSRS-SNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCKRRNT  306 (314)
T ss_pred             chhh-----hcCCcCcccc-cccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhcccch
Confidence            0000     0000000000 0000000001111123344678999999999999999999999999999997764444

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.96  E-value=1.3e-29  Score=225.60  Aligned_cols=181  Identities=33%  Similarity=0.632  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ +++|.+++...  ..++...+..++.|++.||.+||++ |++|+||||+||++.                   
T Consensus        75 ~v~~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~~-~i~H~dikp~NIl~~-------------------  132 (260)
T PF00069_consen   75 IVMEYCPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHSK-GIVHRDIKPENILLD-------------------  132 (260)
T ss_dssp             EEEEEETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHHT-TEEESSBSGGGEEES-------------------
T ss_pred             cccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc-------------------
Confidence            589999 66999999844  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc---ccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~---~~~~~~~~  156 (329)
                                                                           ....++|+|||.+...   ........
T Consensus       133 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  159 (260)
T PF00069_consen  133 -----------------------------------------------------ENGEVKLIDFGSSVKLSENNENFNPFV  159 (260)
T ss_dssp             -----------------------------------------------------TTSEEEESSGTTTEESTSTTSEBSSSS
T ss_pred             -----------------------------------------------------ccccccccccccccccccccccccccc
Confidence                                                                 3467899999998642   23445567


Q ss_pred             CCCCCcchHHhh-cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~-~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||++. +..++.++|+||+||++|+|++|..||...      ........+.+......              
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~------~~~~~~~~~~~~~~~~~--------------  219 (260)
T PF00069_consen  160 GTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES------NSDDQLEIIEKILKRPL--------------  219 (260)
T ss_dssp             SSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS------SHHHHHHHHHHHHHTHH--------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc------cchhhhhhhhhcccccc--------------
Confidence            788999999998 778999999999999999999999999764      22333333333222110              


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                           .............+.+||.+||+.||++|||+.++++||||
T Consensus       220 ---------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  220 ---------------------PSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             ---------------------HHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             ---------------------cccccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence                                 00000111123789999999999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-29  Score=233.29  Aligned_cols=194  Identities=27%  Similarity=0.386  Sum_probs=147.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+ .|++|+||||+||++..                  
T Consensus        78 lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~-~~i~H~dlkp~Nili~~------------------  138 (316)
T cd05574          78 LVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL-LGIVYRDLKPENILLHE------------------  138 (316)
T ss_pred             EEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHH-CCeeccCCChHHeEEcC------------------
Confidence            589999 8999999987655569999999999999999999999 49999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...++|+|||.+.....         
T Consensus       139 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (316)
T cd05574         139 ------------------------------------------------------SGHIMLSDFDLSKQSDVEPPPVSKAL  164 (316)
T ss_pred             ------------------------------------------------------CCCEEEeecchhhccccccccccccc
Confidence                                                                  34678888887643321         


Q ss_pred             -----------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCch
Q 020248          151 -----------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE  207 (329)
Q Consensus       151 -----------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~  207 (329)
                                             ......|+..|+|||++.+..++.++|||||||++|+|++|..||....      ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~------~~  238 (316)
T cd05574         165 RKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSN------RD  238 (316)
T ss_pred             ccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCc------hH
Confidence                                   1112356788999999999889999999999999999999999997652      22


Q ss_pred             HHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC
Q 020248          208 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT  287 (329)
Q Consensus       208 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t  287 (329)
                      ..+..+.   ...+                                     ........+..+.+||.+||..||++|||
T Consensus       239 ~~~~~~~---~~~~-------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~R~s  278 (316)
T cd05574         239 ETFSNIL---KKEV-------------------------------------TFPGSPPVSSSARDLIRKLLVKDPSKRLG  278 (316)
T ss_pred             HHHHHHh---cCCc-------------------------------------cCCCccccCHHHHHHHHHHccCCHhHCCC
Confidence            2221111   0000                                     00001113678999999999999999999


Q ss_pred             ----HHHHhcCCCcCCCCCChhhhhcCCCc
Q 020248          288 ----AQQCLQHPWLSLRNSTRDETKNKSNV  313 (329)
Q Consensus       288 ----a~ell~hpwf~~~~~~~~~~~~~~~~  313 (329)
                          +.|+++||||....+..-..-.-..+
T Consensus       279 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  308 (316)
T cd05574         279 SKRGAAEIKQHPFFRGVNWALIRHTTPPII  308 (316)
T ss_pred             chhhHHHHHcCchhhcCChhhcccCCCCCC
Confidence                99999999999887766555443343

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-30  Score=237.55  Aligned_cols=191  Identities=31%  Similarity=0.429  Sum_probs=159.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||..| |++|.-.+......++++..+..++.+|+.||++||.+ +|+.||+||+|||+                    
T Consensus       262 lVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~-~iVYRDLKPeNILL--------------------  320 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR-RIVYRDLKPENILL--------------------  320 (591)
T ss_pred             EEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc-ceeeccCChhheee--------------------
Confidence            588999 99999888877667899999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc--ccccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA--NKQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~--~~~~~~~~~  157 (329)
                                                                          +...+|+|.|+|+|...  ..+.+..+|
T Consensus       321 ----------------------------------------------------Dd~GhvRISDLGLAvei~~g~~~~~rvG  348 (591)
T KOG0986|consen  321 ----------------------------------------------------DDHGHVRISDLGLAVEIPEGKPIRGRVG  348 (591)
T ss_pred             ----------------------------------------------------ccCCCeEeeccceEEecCCCCccccccC
Confidence                                                                44679999999999554  457777799


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |.+|||||++.+..|+...|.|||||++|+|+.|..||.....      -.-..++                        
T Consensus       349 T~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke------Kvk~eEv------------------------  398 (591)
T KOG0986|consen  349 TVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE------KVKREEV------------------------  398 (591)
T ss_pred             cccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh------hhhHHHH------------------------
Confidence            9999999999999999999999999999999999999976521      0000011                        


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~~  308 (329)
                                    ...+.......+..+++++++|++.+|+.||++|+     .++|+.+||+|+.++|..-+..
T Consensus       399 --------------drr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleag  460 (591)
T KOG0986|consen  399 --------------DRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAG  460 (591)
T ss_pred             --------------HHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhcc
Confidence                          11222333345677789999999999999999997     6889999999999999876654

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.96  E-value=1.4e-29  Score=234.52  Aligned_cols=214  Identities=30%  Similarity=0.519  Sum_probs=164.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++...   +++...+..++.|++.||.|||+. |++|+||+|+||++.                    
T Consensus        87 lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~-~iiH~dl~p~Nili~--------------------  142 (328)
T cd07856          87 FVTELLGTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSA-GVVHRDLKPSNILIN--------------------  142 (328)
T ss_pred             EEeehhccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEeEC--------------------
Confidence            58999988999888753   478889999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........++..
T Consensus       143 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  170 (328)
T cd07856         143 ----------------------------------------------------ENCDLKICDFGLARIQDPQMTGYVSTRY  170 (328)
T ss_pred             ----------------------------------------------------CCCCEEeCccccccccCCCcCCCccccc
Confidence                                                                2457899999998766554445567889


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc--ccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD--YFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~  237 (329)
                      |+|||.+.+ ..++.++|+||+||++|+|++|..||...      +.......+.+.+|.+|+++.........  ++..
T Consensus       171 y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (328)
T cd07856         171 YRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK------DHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS  244 (328)
T ss_pred             ccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhh
Confidence            999998776 56899999999999999999999999766      45667788889999999888764322211  1000


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~  309 (329)
                      .      ...........       ....+..+.++|++||+.+|++|||+.+++.||||.....+..+...
T Consensus       245 ~------~~~~~~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~~~~~~~~  303 (328)
T cd07856         245 L------PKREPVPFSEK-------FKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYHDPTDEPVA  303 (328)
T ss_pred             c------cccCCCcHHHH-------cCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCccccccCCccccCc
Confidence            0      00000000000       11235789999999999999999999999999999877766555443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=8.3e-30  Score=237.32  Aligned_cols=212  Identities=30%  Similarity=0.511  Sum_probs=157.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.++..    ..++...+..++.|++.||+|||+. |++||||||+||+++                    
T Consensus        97 lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dlkp~NIll~--------------------  151 (342)
T cd07879          97 LVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSA-GIIHRDLKPGNLAVN--------------------  151 (342)
T ss_pred             EEecccccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC--------------------
Confidence            478888777776653    2489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........++..
T Consensus       152 ----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~  179 (342)
T cd07879         152 ----------------------------------------------------EDCELKILDFGLARHADAEMTGYVVTRW  179 (342)
T ss_pred             ----------------------------------------------------CCCCEEEeeCCCCcCCCCCCCCceeeec
Confidence                                                                3457999999998665544444566788


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~  237 (329)
                      |+|||.+.+ ..++.++|+|||||++|+|++|+.||.+.      +....+..+...+|..++.+........  .+...
T Consensus       180 y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (342)
T cd07879         180 YRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------DYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKS  253 (342)
T ss_pred             ccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhh
Confidence            999999876 46899999999999999999999999865      4566778888888877777654432211  11100


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~  308 (329)
                      ...      .........       ....+..+.+||.+||+.||++|||+.|++.||||........+.+
T Consensus       254 ~~~------~~~~~~~~~-------~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~~~~~  311 (342)
T cd07879         254 LPK------YPRKDFSTL-------FPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEETE  311 (342)
T ss_pred             cCC------cccchHHHH-------hcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccccccCC
Confidence            000      000000110       1123567889999999999999999999999999998875544433

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.96  E-value=2e-29  Score=234.94  Aligned_cols=215  Identities=30%  Similarity=0.517  Sum_probs=160.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|.+|.+++..   ..++...++.++.||+.||+|||+. |++||||||+||+++.                   
T Consensus        97 lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~LH~~-gi~H~dlkp~Nill~~-------------------  153 (343)
T cd07880          97 LVMPFMGTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYIHAA-GIIHRDLKPGNLAVNE-------------------  153 (343)
T ss_pred             EEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC-------------------
Confidence            5889999999988875   3489999999999999999999994 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                           ...++|+|||.+...........+++.
T Consensus       154 -----------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~  180 (343)
T cd07880         154 -----------------------------------------------------DCELKILDFGLARQTDSEMTGYVVTRW  180 (343)
T ss_pred             -----------------------------------------------------CCCEEEeecccccccccCccccccCCc
Confidence                                                                 457899999999766555555567889


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      |+|||.+.+ ..++.++|+||+||++|++++|..||...      +.......+....+..|..+..........     
T Consensus       181 y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  249 (343)
T cd07880         181 YRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH------DHLDQLMEIMKVTGTPSKEFVQKLQSEDAK-----  249 (343)
T ss_pred             ccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHhhcchhHH-----
Confidence            999999886 35889999999999999999999999865      455666667777777776665443322100     


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~  308 (329)
                      ..  ...........+ .   ......+..+.++|.+||+.||++|||+.++++||||........+..
T Consensus       250 ~~--~~~~~~~~~~~~-~---~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~~~~  312 (343)
T cd07880         250 NY--VKKLPRFRKKDF-R---SLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPEDETE  312 (343)
T ss_pred             HH--HHhccccCcchH-H---HhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCcccccC
Confidence            00  000000000000 0   012334567999999999999999999999999999998765544433

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=6.3e-30  Score=249.12  Aligned_cols=182  Identities=26%  Similarity=0.335  Sum_probs=143.3

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...+++..+..++.|++.||.|||++ ||+||||||+||++..                
T Consensus       116 lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~-~IiHrDLKP~NILl~~----------------  178 (496)
T PTZ00283        116 LVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK-HMIHRDIKSANILLCS----------------  178 (496)
T ss_pred             EEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEeC----------------
Confidence            589999 899999987542  24589999999999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QF  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~  152 (329)
                                                                              ...++|+|||++.....     ..
T Consensus       179 --------------------------------------------------------~~~vkL~DFGls~~~~~~~~~~~~  202 (496)
T PTZ00283        179 --------------------------------------------------------NGLVKLGDFGFSKMYAATVSDDVG  202 (496)
T ss_pred             --------------------------------------------------------CCCEEEEecccCeecccccccccc
Confidence                                                                    45799999999854432     22


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....|++.|+|||++.+..++.++|||||||++|+|++|..||....      ....+..+.  .+.             
T Consensus       203 ~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~------~~~~~~~~~--~~~-------------  261 (496)
T PTZ00283        203 RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN------MEEVMHKTL--AGR-------------  261 (496)
T ss_pred             ccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHh--cCC-------------
Confidence            34568999999999999999999999999999999999999997541      111111110  000             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                ....+...+..+.+|+.+||+.||.+|||+.++++|||++....
T Consensus       262 --------------------------~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~~~  305 (496)
T PTZ00283        262 --------------------------YDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKLFIS  305 (496)
T ss_pred             --------------------------CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHHhhh
Confidence                                      00123334678999999999999999999999999999876443

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=8.3e-30  Score=230.35  Aligned_cols=178  Identities=32%  Similarity=0.505  Sum_probs=137.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.......++...+..++.||+.||.|||+. |++|+||+|+||++..                  
T Consensus        96 iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~ivH~dl~~~nili~~------------------  156 (282)
T cd06636          96 LVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH-KVIHRDIKGQNVLLTE------------------  156 (282)
T ss_pred             EEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEECC------------------
Confidence            589999 77999999876555688889999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...++|+|||.+.....   ......
T Consensus       157 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  182 (282)
T cd06636         157 ------------------------------------------------------NAEVKLVDFGVSAQLDRTVGRRNTFI  182 (282)
T ss_pred             ------------------------------------------------------CCCEEEeeCcchhhhhccccCCCccc
Confidence                                                                  34689999999864432   223346


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++..|+|||.+.     ...++.++|+|||||++|+|++|..||....      +...+..+   ....+          
T Consensus       183 ~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~------~~~~~~~~---~~~~~----------  243 (282)
T cd06636         183 GTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH------PMRALFLI---PRNPP----------  243 (282)
T ss_pred             ccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC------HHhhhhhH---hhCCC----------
Confidence            788999999986     3468889999999999999999999996541      11111100   00000          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                 ........+..+.+||++||+.||++|||+.||++||||
T Consensus       244 ---------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         244 ---------------------------PKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             ---------------------------CCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence                                       000111235689999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.96  E-value=2.5e-29  Score=227.19  Aligned_cols=205  Identities=27%  Similarity=0.442  Sum_probs=149.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ ++.|..++...  ..+++..+..++.||+.||.|||+ .|++|+||||+||++..                  
T Consensus        77 ~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~LH~-~~i~H~dl~p~nil~~~------------------  135 (286)
T cd07847          77 LVFEYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFCHK-HNCIHRDVKPENILITK------------------  135 (286)
T ss_pred             EEEeccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHH-CCceecCCChhhEEEcC------------------
Confidence            589999 66676665543  348999999999999999999999 59999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       136 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (286)
T cd07847         136 ------------------------------------------------------QGQIKLCDFGFARILTGPGDDYTDYV  161 (286)
T ss_pred             ------------------------------------------------------CCcEEECccccceecCCCcccccCcc
Confidence                                                                  357999999998654432   22345


Q ss_pred             CCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+ ..++.++|+||+||++|+|++|..||.+.      ...+.+..+...++...+.....+... .++
T Consensus       162 ~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  234 (286)
T cd07847         162 ATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGK------SDVDQLYLIRKTLGDLIPRHQQIFSTN-QFF  234 (286)
T ss_pred             cccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChHHhhhcccc-ccc
Confidence            6788999999876 45889999999999999999999999876      456677777777777665443332111 111


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .........   ........       ....+..+.+|+.+||+.+|++|||+.|++.||||
T Consensus       235 ~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         235 KGLSIPEPE---TREPLESK-------FPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             ccccCCCcc---cccCHHHH-------hccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            111000000   00000110       11235788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=4.4e-30  Score=239.23  Aligned_cols=172  Identities=27%  Similarity=0.386  Sum_probs=142.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| -+||.+++....+..+.......++.||++||+||+++ ++|||||...|||+                    
T Consensus       278 IVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~-~~IHRDLAARNiLV--------------------  336 (468)
T KOG0197|consen  278 IVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK-NYIHRDLAARNILV--------------------  336 (468)
T ss_pred             EEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC-Cccchhhhhhheee--------------------
Confidence            699999 89999999986556799999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc-cCCC-
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-EEIQ-  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~-  157 (329)
                                                                          +....+||+|||+|+....... ...+ 
T Consensus       337 ----------------------------------------------------~~~~~vKIsDFGLAr~~~d~~Y~~~~~~  364 (468)
T KOG0197|consen  337 ----------------------------------------------------DEDLVVKISDFGLARLIGDDEYTASEGG  364 (468)
T ss_pred             ----------------------------------------------------ccCceEEEcccccccccCCCceeecCCC
Confidence                                                                3456899999999985443221 2222 


Q ss_pred             --CCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 --TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 --~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                        |..|.|||.+....+|.+|||||||+++||++| |+.|+.++      ...+.+..+.+                   
T Consensus       365 kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~m------sn~ev~~~le~-------------------  419 (468)
T KOG0197|consen  365 KFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGM------SNEEVLELLER-------------------  419 (468)
T ss_pred             CCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCC------CHHHHHHHHhc-------------------
Confidence              568999999999999999999999999999987 89998887      34444444321                   


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  292 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell  292 (329)
                                            ..+++.|..++..+.++|..||+.+|++|||++.+.
T Consensus       420 ----------------------GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  420 ----------------------GYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             ----------------------cCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence                                  112345678999999999999999999999999664

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=7.8e-30  Score=247.78  Aligned_cols=180  Identities=29%  Similarity=0.383  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||+ |++|.+++...  ....++...+..++.||+.||.|||++ ||+||||||+||++.                 
T Consensus       142 lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll~-----------------  203 (478)
T PTZ00267        142 LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR-KMMHRDLKSANIFLM-----------------  203 (478)
T ss_pred             EEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCcCHHhEEEC-----------------
Confidence            689999 99999988643  223588999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----c
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----F  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~  152 (329)
                                                                             ....++|+|||++......     .
T Consensus       204 -------------------------------------------------------~~~~~kL~DFgla~~~~~~~~~~~~  228 (478)
T PTZ00267        204 -------------------------------------------------------PTGIIKLGDFGFSKQYSDSVSLDVA  228 (478)
T ss_pred             -------------------------------------------------------CCCcEEEEeCcCceecCCccccccc
Confidence                                                                   2457999999999655432     2


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+||+.|+|||++.+..++.++|||||||++|+|++|..||....      ....+..+..  |..            
T Consensus       229 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~------~~~~~~~~~~--~~~------------  288 (478)
T PTZ00267        229 SSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS------QREIMQQVLY--GKY------------  288 (478)
T ss_pred             cccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--CCC------------
Confidence            34468999999999999899999999999999999999999997541      2222221110  110            


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                                 ...+...+..+.+||.+||..||++|||+.+++.|||+...
T Consensus       289 ---------------------------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~~  329 (478)
T PTZ00267        289 ---------------------------DPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKYV  329 (478)
T ss_pred             ---------------------------CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHHH
Confidence                                       01122345678999999999999999999999999999754

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.96  E-value=2.3e-29  Score=228.82  Aligned_cols=206  Identities=28%  Similarity=0.510  Sum_probs=150.3

Q ss_pred             CcccccchhHHHHHHhhcC---CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~---~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||++++|.+++.....   ..+++..+..++.||+.||.|||++ |++||||+|+||+++..               
T Consensus        83 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~-~i~H~dl~~~nil~~~~---------------  146 (295)
T cd07837          83 LVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH-GVMHRDLKPQNLLVDKQ---------------  146 (295)
T ss_pred             EEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEEecC---------------
Confidence            5899996689888876432   3589999999999999999999995 99999999999999331               


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                              ...++|+|||.+.....   ....
T Consensus       147 --------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~  170 (295)
T cd07837         147 --------------------------------------------------------KGLLKIADLGLGRAFSIPVKSYTH  170 (295)
T ss_pred             --------------------------------------------------------CCeEEEeecccceecCCCccccCC
Confidence                                                                    34789999998854432   2223


Q ss_pred             CCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..+++.|+|||++.+ ..++.++|+||+||++|+|++|..||.+.      ++...+..+.+.++..+...+........
T Consensus       171 ~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (295)
T cd07837         171 EIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGD------SELQQLLHIFKLLGTPTEQVWPGVSKLRD  244 (295)
T ss_pred             cccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHhCCCChhhCcchhhccc
Confidence            355778999999876 45799999999999999999999999875      45666667777777655544332211111


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                      +.. ...         +......    ......+..+.+||++||..||++|||+.|+++||||.
T Consensus       245 ~~~-~~~---------~~~~~~~----~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         245 WHE-FPQ---------WKPQDLS----RAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             hhh-cCc---------ccchhHH----HhccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            110 000         0000000    01122466789999999999999999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.96  E-value=1.6e-29  Score=229.89  Aligned_cols=210  Identities=28%  Similarity=0.406  Sum_probs=156.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.......++...+..++.||+.||+|||++ |++|+||+|+||++...                  
T Consensus        78 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~i~H~dl~p~nill~~~------------------  138 (294)
T PLN00009         78 LVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH-RVLHRDLKPQNLLIDRR------------------  138 (294)
T ss_pred             EEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCcceEEEECC------------------
Confidence            58999977898888765444467888999999999999999995 99999999999999421                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                           ...++|+|||.+.....   ......+
T Consensus       139 -----------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~  165 (294)
T PLN00009        139 -----------------------------------------------------TNALKLADFGLARAFGIPVRTFTHEVV  165 (294)
T ss_pred             -----------------------------------------------------CCEEEEcccccccccCCCccccccCce
Confidence                                                                 23689999999854432   2233456


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+||+||++|+|++|..||...      +..+.+..+....+..+..++..+.....+..
T Consensus       166 ~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (294)
T PLN00009        166 TLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGD------SEIDELFKIFRILGTPNEETWPGVTSLPDYKS  239 (294)
T ss_pred             eecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChhhccccccchhhhh
Confidence            7889999998764 5789999999999999999999999865      45566777777788777666654433333221


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ....+..      .....       .....+..+.+++.+||+.+|++||++.++++||||....
T Consensus       240 ~~~~~~~------~~~~~-------~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~  291 (294)
T PLN00009        240 AFPKWPP------KDLAT-------VVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDLG  291 (294)
T ss_pred             hcccCCC------CCHHH-------hCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHHh
Confidence            1110000      00000       1122356789999999999999999999999999998764

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.96  E-value=1.4e-29  Score=227.60  Aligned_cols=178  Identities=25%  Similarity=0.442  Sum_probs=139.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||+. |++||||||+||++..                  
T Consensus        86 iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~~------------------  144 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKH-NIIHNDIKLENVLYDR------------------  144 (267)
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEeC------------------
Confidence            589999 899999998763  599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCC-ceEEeecCcccccccccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANKQFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~Dfg~a~~~~~~~~~~~~~  158 (329)
                                                                            .. .++|+|||.+...... ....++
T Consensus       145 ------------------------------------------------------~~~~~~l~dfg~~~~~~~~-~~~~~~  169 (267)
T PHA03390        145 ------------------------------------------------------AKDRIYLCDYGLCKIIGTP-SCYDGT  169 (267)
T ss_pred             ------------------------------------------------------CCCeEEEecCccceecCCC-ccCCCC
Confidence                                                                  23 6899999988655433 234578


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ..|+|||++.+..++.++|+||+||++|+|++|..||......     ......+....                     
T Consensus       170 ~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~---------------------  223 (267)
T PHA03390        170 LDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDE-----ELDLESLLKRQ---------------------  223 (267)
T ss_pred             CcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcc-----hhhHHHHHHhh---------------------
Confidence            8999999999888999999999999999999999999754211     00011111000                     


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-HHHHhcCCCcC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-AQQCLQHPWLS  298 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-a~ell~hpwf~  298 (329)
                                        ..........+..+.+||.+||+.||++|++ ++|+++||||.
T Consensus       224 ------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        224 ------------------QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             ------------------cccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence                              0011122234678999999999999999996 59999999996

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.96  E-value=5.4e-30  Score=239.56  Aligned_cols=178  Identities=30%  Similarity=0.474  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.      ...+...+..++.||+.||.|||+. ||+||||||+||++.                   
T Consensus       149 lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  202 (353)
T PLN00034        149 VLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRR-HIVHRDIKPSNLLIN-------------------  202 (353)
T ss_pred             EEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEc-------------------
Confidence            589999 8888642      2256778889999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       203 -----------------------------------------------------~~~~~kL~DfG~~~~~~~~~~~~~~~~  229 (353)
T PLN00034        203 -----------------------------------------------------SAKNVKIADFGVSRILAQTMDPCNSSV  229 (353)
T ss_pred             -----------------------------------------------------CCCCEEEcccccceecccccccccccc
Confidence                                                                 245799999999865432   223457


Q ss_pred             CCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      |+..|+|||++..     ...+.++|||||||++|+|++|..||....      ..+....+......            
T Consensus       230 gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~------------  291 (353)
T PLN00034        230 GTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGR------QGDWASLMCAICMS------------  291 (353)
T ss_pred             cCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCC------CccHHHHHHHHhcc------------
Confidence            8999999998742     235678999999999999999999997331      11111111100000            


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                .....+...+.++.+||.+||+.||++|||+.|+++||||....
T Consensus       292 --------------------------~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        292 --------------------------QPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             --------------------------CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCC
Confidence                                      00011233466899999999999999999999999999999864

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.96  E-value=7.8e-30  Score=236.56  Aligned_cols=189  Identities=20%  Similarity=0.353  Sum_probs=140.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..++...++.++.||+.||.|||+ .||+||||||+||+++                   
T Consensus        78 lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~-~~iiHrDlkp~Nili~-------------------  136 (332)
T cd05623          78 LVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQ-LHYVHRDIKPDNILMD-------------------  136 (332)
T ss_pred             EEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH-CCeEecCCCHHHEEEC-------------------
Confidence            589999 899999998643 358999999999999999999999 4999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       137 -----------------------------------------------------~~~~~kL~DfG~a~~~~~~~~~~~~~~  163 (332)
T cd05623         137 -----------------------------------------------------MNGHIRLADFGSCLKLMEDGTVQSSVA  163 (332)
T ss_pred             -----------------------------------------------------CCCCEEEeecchheecccCCcceeccc
Confidence                                                                 245799999998854321    12234


Q ss_pred             CCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          156 IQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .|++.|+|||++.+     ..++.++|+|||||++|+|++|..||....      .......+......++         
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~~---------  228 (332)
T cd05623         164 VGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHKERFQ---------  228 (332)
T ss_pred             ccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC------HHHHHHHHhCCCcccc---------
Confidence            68999999999873     458899999999999999999999997642      2222222211000000         


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChhh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                                  ........+..+.+||++||..++.+  |+++.|+++||||...++..-.
T Consensus       229 ----------------------------~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~~~~~~~  278 (332)
T cd05623         229 ----------------------------FPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGIDWDNIR  278 (332)
T ss_pred             ----------------------------CCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCCCHHHHh
Confidence                                        00001123568899999999765544  6899999999999988765443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PHA02988 hypothetical protein; Provisional

Probab=99.96  E-value=1.7e-29  Score=229.23  Aligned_cols=173  Identities=14%  Similarity=0.217  Sum_probs=137.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++....  .++......++.|++.||.|||+..+++||||||+||++.                   
T Consensus        99 lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~-------------------  157 (283)
T PHA02988         99 LILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVT-------------------  157 (283)
T ss_pred             EEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEEC-------------------
Confidence            589999 899999998753  5889999999999999999999744899999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........++.
T Consensus       158 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  184 (283)
T PHA02988        158 -----------------------------------------------------ENYKLKIICHGLEKILSSPPFKNVNFM  184 (283)
T ss_pred             -----------------------------------------------------CCCcEEEcccchHhhhccccccccCcc
Confidence                                                                 245789999999866555445567889


Q ss_pred             CCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          160 QYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       160 ~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      .|+|||++.+  ..++.++|||||||++|+|++|..||....      .......+... +.                  
T Consensus       185 ~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~------~~~~~~~i~~~-~~------------------  239 (283)
T PHA02988        185 VYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT------TKEIYDLIINK-NN------------------  239 (283)
T ss_pred             cccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhc-CC------------------
Confidence            9999999976  579999999999999999999999997652      22222222110 00                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                           ....+...+..+.+||.+||+.||++|||++|+++
T Consensus       240 ---------------------~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        240 ---------------------SLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             ---------------------CCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                                 00122234678999999999999999999999985

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=4.7e-30  Score=215.97  Aligned_cols=211  Identities=22%  Similarity=0.430  Sum_probs=149.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||+. ..++..+..     .|+--.++..+++++.||.|||+ +||+|||+||.|++++..                 
T Consensus       112 LiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS-~GImHRDVKPhNvmIdh~-----------------  168 (338)
T KOG0668|consen  112 LIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHS-MGIMHRDVKPHNVMIDHE-----------------  168 (338)
T ss_pred             hHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHh-cCcccccCCcceeeechh-----------------
Confidence            456666 333333222     37778899999999999999999 699999999999999442                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                            ...++|+|+|+|-...  ....-.+.
T Consensus       169 ------------------------------------------------------~rkLrlIDWGLAEFYHp~~eYnVRVA  194 (338)
T KOG0668|consen  169 ------------------------------------------------------LRKLRLIDWGLAEFYHPGKEYNVRVA  194 (338)
T ss_pred             ------------------------------------------------------hceeeeeecchHhhcCCCceeeeeee
Confidence                                                                  4578999999994433  34445567


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCc--HHHHhcC-CCCcc
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP--RKIAIGG-AQSKD  233 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p--~~~~~~~-~~~~~  233 (329)
                      +.+|-.||++.... |..+.|+|||||+++.|+..+-||....     ++.+++..|..++|.--  ..+.+-. .....
T Consensus       195 SRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~-----dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~  269 (338)
T KOG0668|consen  195 SRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQ  269 (338)
T ss_pred             hhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCC-----CCHHHHHHHHHHhChHHHHHHHHHHccCCChh
Confidence            88999999998764 7889999999999999999998887654     68899999999999821  1111110 01111


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      +.+-.|...+.      .+........  ......++.||+.++|.+|.++|+||.|+|.||||..+.
T Consensus       270 ~~~i~~~~~rk------~w~~Fi~~~n--~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~  329 (338)
T KOG0668|consen  270 FEDILGRHSRK------PWSRFINSEN--QHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVR  329 (338)
T ss_pred             HhhHhhccccc------cHHHhCCccc--cccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHH
Confidence            11111111110      1111111110  111247899999999999999999999999999998764

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=1.1e-29  Score=239.26  Aligned_cols=182  Identities=25%  Similarity=0.417  Sum_probs=138.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...   .++...++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       120 lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDLkp~NIll~-------------------  176 (371)
T cd05622         120 MVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLLD-------------------  176 (371)
T ss_pred             EEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CEEeCCCCHHHEEEC-------------------
Confidence            589999 89999998764   389999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       177 -----------------------------------------------------~~~~ikL~DfG~a~~~~~~~~~~~~~~  203 (371)
T cd05622         177 -----------------------------------------------------KSGHLKLADFGTCMKMNKEGMVRCDTA  203 (371)
T ss_pred             -----------------------------------------------------CCCCEEEEeCCceeEcCcCCcccccCc
Confidence                                                                 245799999999865432    22345


Q ss_pred             CCCCCCcchHHhhcCC----CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          156 IQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~----~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      .||+.|+|||++.+..    ++.++|||||||++|+|++|..||...      +.......+......++          
T Consensus       204 ~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~------~~~~~~~~i~~~~~~~~----------  267 (371)
T cd05622         204 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD------SLVGTYSKIMNHKNSLT----------  267 (371)
T ss_pred             ccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC------CHHHHHHHHHcCCCccc----------
Confidence            6899999999997643    789999999999999999999999765      22222222221100000          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC---CcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK---RPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~---R~ta~ell~hpwf~~~~~~  303 (329)
                                                  .+.....+..+.+||.+||. +|..   |+++.|+++||||....+.
T Consensus       268 ----------------------------~~~~~~~s~~~~~li~~~L~-~~~~r~~r~~~~ei~~h~~~~~~~~~  313 (371)
T cd05622         268 ----------------------------FPDDNDISKEAKNLICAFLT-DREVRLGRNGVEEIKRHLFFKNDQWA  313 (371)
T ss_pred             ----------------------------CCCcCCCCHHHHHHHHHHcC-ChhhhcCCCCHHHHhcCcccCCCChh
Confidence                                        00112346688999999998 4444   7799999999999886543

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8e-30  Score=237.36  Aligned_cols=180  Identities=27%  Similarity=0.438  Sum_probs=137.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||=..+|..++...+.. ++--.++.+..|+|.|+.++|++ ||||.||||.|+|+.                    
T Consensus       437 mvmE~Gd~DL~kiL~k~~~~-~~~~~lk~ywkqML~aV~~IH~~-gIVHSDLKPANFLlV--------------------  494 (677)
T KOG0596|consen  437 MVMECGDIDLNKILKKKKSI-DPDWFLKFYWKQMLLAVKTIHQH-GIVHSDLKPANFLLV--------------------  494 (677)
T ss_pred             EEeecccccHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHh-ceeecCCCcccEEEE--------------------
Confidence            68998778999999987632 23238999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                           .+.+||||||.|.-....     ....
T Consensus       495 -----------------------------------------------------kG~LKLIDFGIA~aI~~DTTsI~kdsQ  521 (677)
T KOG0596|consen  495 -----------------------------------------------------KGRLKLIDFGIANAIQPDTTSIVKDSQ  521 (677)
T ss_pred             -----------------------------------------------------eeeEEeeeechhcccCccccceeeccc
Confidence                                                                 357999999999554432     3456


Q ss_pred             CCCCCCcchHHhhc-----------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          156 IQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      +||..||+||-+..           .+++.+|||||||||+|+|+.|++||...        ...++.|..+..+     
T Consensus       522 vGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~--------~n~~aKl~aI~~P-----  588 (677)
T KOG0596|consen  522 VGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI--------INQIAKLHAITDP-----  588 (677)
T ss_pred             cCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH--------HHHHHHHHhhcCC-----
Confidence            89999999998852           23789999999999999999999999643        1233333222211     


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCCh-hhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                   +-                   ..+++. ....++.++|+.||.+||.+|+|..|+|+|||++..
T Consensus       589 -------------~~-------------------~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~~  633 (677)
T KOG0596|consen  589 -------------NH-------------------EIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQHPFLQIQ  633 (677)
T ss_pred             -------------Cc-------------------cccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhcCcccccc
Confidence                         00                   000111 112349999999999999999999999999999974

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.5e-29  Score=215.56  Aligned_cols=218  Identities=24%  Similarity=0.394  Sum_probs=169.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||.+|..+|.-++.... ..++..+++.++.+++.||.|+|. ..|+|||+|++|+|++                    
T Consensus       101 lVf~~cehDLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr-~kilHRDmKaaNvLIt--------------------  158 (376)
T KOG0669|consen  101 LVFDFCEHDLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHR-NKILHRDMKAANVLIT--------------------  158 (376)
T ss_pred             eeHHHhhhhHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHH-hhHHhhcccHhhEEEc--------------------
Confidence            689999999999887653 459999999999999999999999 4999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QFA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~~  153 (329)
                                                                          ....++|+|||.++.+..       ..+
T Consensus       159 ----------------------------------------------------~dgilklADFGlar~fs~~~n~~kpryt  186 (376)
T KOG0669|consen  159 ----------------------------------------------------KDGILKLADFGLARAFSTSKNVVKPRYT  186 (376)
T ss_pred             ----------------------------------------------------CCceEEeeccccccceecccccCCCCcc
Confidence                                                                346799999999955442       234


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..+.|..|++||.++|. .|+++.|||..|||+.+|.++.+.|.+.      .+..++..|..+.|.+..++|.......
T Consensus       187 nrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn------teqqql~~Is~LcGs~tkevWP~~d~lp  260 (376)
T KOG0669|consen  187 NRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN------TEQQQLHLISQLCGSITKEVWPNVDNLP  260 (376)
T ss_pred             cceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC------hHHHHHHHHHHHhccCCcccCCCcccch
Confidence            45568899999999986 5999999999999999999999999876      5888999999999999988886655544


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      .|..-...     +......+++-.. . .+-.-..++.|||.+||.+||.+|++++++++|.||..-..+.+
T Consensus       261 L~~sie~e-----Pl~~~~~rkv~n~-~-kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~pqa  326 (376)
T KOG0669|consen  261 LYQSIELE-----PLPKGQKRKVKNR-L-KPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMPQA  326 (376)
T ss_pred             HHHhccCC-----CCCcchhhhhhhh-c-ccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCcchh
Confidence            43222111     0111111111111 1 12222457899999999999999999999999999987655543

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.96  E-value=2.8e-29  Score=227.11  Aligned_cols=207  Identities=31%  Similarity=0.498  Sum_probs=155.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+++++...+.... ..++...+..++.||+.||.|||+. |++|+||+|+||++.                    
T Consensus        77 iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~ni~~~--------------------  134 (288)
T cd07833          77 LVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHSH-NIIHRDIKPENILVS--------------------  134 (288)
T ss_pred             EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEC--------------------
Confidence            589999444444433322 4489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~~  156 (329)
                                                                          ....++|+|||.+.....    ......
T Consensus       135 ----------------------------------------------------~~~~~kl~d~g~~~~~~~~~~~~~~~~~  162 (288)
T cd07833         135 ----------------------------------------------------ESGVLKLCDFGFARALRARPASPLTDYV  162 (288)
T ss_pred             ----------------------------------------------------CCCCEEEEeeecccccCCCccccccCcc
Confidence                                                                345799999999855443    223445


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||++.+. .++.++|+||+||++|+|++|..||...      ...+.+..+....|.+++.....+.....+.
T Consensus       163 ~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T cd07833         163 ATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD------SDIDQLYLIQKCLGPLPPSHQELFSSNPRFA  236 (288)
T ss_pred             cccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHhhhcccCcccc
Confidence            67889999999988 7899999999999999999999999765      4567788888889988887765554332221


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ...  ...      .........  ..+...+..+.+||++||..+|++|||++++++||||
T Consensus       237 ~~~--~~~------~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         237 GVA--FPE------PSQPESLER--RYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             ccc--cCC------CCCcHHHHH--hcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            100  000      000000011  1233447889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=8.2e-30  Score=248.78  Aligned_cols=215  Identities=23%  Similarity=0.298  Sum_probs=146.0

Q ss_pred             CcccccchhHHHHHHhhc---CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~---~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||++++.+|..++....   ........++.++.||+.||.|||++ ||+||||||+||+++                 
T Consensus       240 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~-gIiHrDLKP~NILl~-----------------  301 (501)
T PHA03210        240 MITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK-KLIHRDIKLENIFLN-----------------  301 (501)
T ss_pred             EEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC-----------------
Confidence            467888778888776432   12244667889999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FA  153 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~  153 (329)
                                                                             ....++|+|||++......    ..
T Consensus       302 -------------------------------------------------------~~~~vkL~DFGla~~~~~~~~~~~~  326 (501)
T PHA03210        302 -------------------------------------------------------CDGKIVLGDFGTAMPFEKEREAFDY  326 (501)
T ss_pred             -------------------------------------------------------CCCCEEEEeCCCceecCcccccccc
Confidence                                                                   2457999999999654432    22


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...|+..|+|||++.+..++.++|||||||++|+|++|..++....   .......+..+...++..+.++.........
T Consensus       327 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  403 (501)
T PHA03210        327 GWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDG---GGKPGKQLLKIIDSLSVCDEEFPDPPCKLFD  403 (501)
T ss_pred             cccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCC---CCCHHHHHHHHHHhcccChhhcCCcHHHHHH
Confidence            3468999999999999999999999999999999999876543321   1134456666666655443332110000000


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      +.... ....    ....+...+..     ...+..+.++|.+||++||.+|||+.|+|+||||....
T Consensus       404 ~i~~~-~~~~----~~~~~~~~~~~-----~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~  461 (501)
T PHA03210        404 YIDSA-EIDH----AGHSVPPLIRN-----LGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEE  461 (501)
T ss_pred             Hhhhh-hccc----CccchhhHHHh-----cCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCC
Confidence            00000 0000    00011111111     11345789999999999999999999999999998754

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-29  Score=234.99  Aligned_cols=208  Identities=30%  Similarity=0.508  Sum_probs=152.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...   .++...+..++.|++.||.|||+. |++||||||+||+++                    
T Consensus        85 lv~e~~~~~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~~-~ivH~dlkp~Nill~--------------------  140 (336)
T cd07849          85 IVQELMETDLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLN--------------------  140 (336)
T ss_pred             EEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEEC--------------------
Confidence            57899988888887653   489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~~  154 (329)
                                                                          ....++|+|||.+......      ...
T Consensus       141 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  168 (336)
T cd07849         141 ----------------------------------------------------TNCDLKICDFGLARIADPEHDHTGFLTE  168 (336)
T ss_pred             ----------------------------------------------------CCCCEEECcccceeeccccccccCCcCC
Confidence                                                                2457999999988544321      122


Q ss_pred             CCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC--C
Q 020248          155 EIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ--S  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~--~  231 (329)
                      ..++..|+|||.+.+ ..++.++|+||+||++|+|++|+.||.+.      +....+..+...++..+.+....-..  .
T Consensus       169 ~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (336)
T cd07849         169 YVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGK------DYLHQLNLILGVLGTPSQEDLNCIISLRA  242 (336)
T ss_pred             cCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCCHHHHHHhhchhh
Confidence            456888999998765 46899999999999999999999999765      45667778888888765544321110  0


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ..+.......      ........       ....+..+.+||++||+.||++|||+.|+++||||......
T Consensus       243 ~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         243 RNYIKSLPFK------PKVPWNKL-------FPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             hhHHhhcCcC------CcccHHHH-------hcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence            0110000000      00000000       11235678999999999999999999999999999976543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.96  E-value=2.5e-29  Score=227.15  Aligned_cols=205  Identities=29%  Similarity=0.493  Sum_probs=153.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++.......++...+..++.|++.||+|||++ +++||||+|+||+++.                   
T Consensus        75 iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~-~~~H~dl~p~nil~~~-------------------  134 (283)
T cd07835          75 LVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH-RVLHRDLKPQNLLIDR-------------------  134 (283)
T ss_pred             EEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEEcC-------------------
Confidence            58999977999998876534589999999999999999999995 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                           ...++|+|||.+.....   ......+
T Consensus       135 -----------------------------------------------------~~~~~l~df~~~~~~~~~~~~~~~~~~  161 (283)
T cd07835         135 -----------------------------------------------------EGALKLADFGLARAFGVPVRTYTHEVV  161 (283)
T ss_pred             -----------------------------------------------------CCcEEEeecccccccCCCccccCcccc
Confidence                                                                 45789999999865432   2233355


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||++.+. .++.++|+||+||++|+|++|..||...      +....+..+.+.++.+...++........+..
T Consensus       162 ~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd07835         162 TLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGD------SEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKP  235 (283)
T ss_pred             ccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHHhhhhhhchhhhh
Confidence            7789999988764 5789999999999999999999999765      45566677777778777665543322222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ........      ....       .....+..+.+|+++||+.||++|||+.|+++||||
T Consensus       236 ~~~~~~~~------~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         236 TFPKWARQ------DLSK-------VVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             hccccccc------chhh-------hcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            11100000      0000       112235688999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.96  E-value=4.9e-29  Score=232.42  Aligned_cols=210  Identities=30%  Similarity=0.497  Sum_probs=158.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++++++|++|.+++...   .++...+..++.|++.||+|||+. |++||||||+||++.                    
T Consensus        99 lv~~~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIll~--------------------  154 (345)
T cd07877          99 LVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVN--------------------  154 (345)
T ss_pred             EEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChHHEEEc--------------------
Confidence            36778899999888753   489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........++..
T Consensus       155 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  182 (345)
T cd07877         155 ----------------------------------------------------EDCELKILDFGLARHTDDEMTGYVATRW  182 (345)
T ss_pred             ----------------------------------------------------CCCCEEEecccccccccccccccccCCC
Confidence                                                                2457999999998766555445567889


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~  237 (329)
                      |+|||.+.+ ..++.++|+||+||++|+|++|..||...      +....+..+.+..+..++.+........  .+...
T Consensus       183 y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (345)
T cd07877         183 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRLVGTPGAELLKKISSESARNYIQS  256 (345)
T ss_pred             ccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHH
Confidence            999999877 46889999999999999999999999765      4566777788888887776654332110  01000


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      .      .......+...       ....+..+.+||.+||+.||++|+|+.++++||||.....+..
T Consensus       257 ~------~~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~~~~  311 (345)
T cd07877         257 L------TQMPKMNFANV-------FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD  311 (345)
T ss_pred             h------cccCCcchhhh-------cCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCCCCc
Confidence            0      00000000000       0123567899999999999999999999999999997654443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.96  E-value=8.4e-30  Score=225.07  Aligned_cols=170  Identities=29%  Similarity=0.404  Sum_probs=135.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||++ |++||||||+||++..                  
T Consensus        62 lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nil~~~------------------  120 (237)
T cd05576          62 LVLQHAEGGKLWSHISKFL--NIPEECVKRWAAEMVVALDALHRE-GIVCRDLNPNNILLDD------------------  120 (237)
T ss_pred             EEEecCCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEEcC------------------
Confidence            589999 889999987653  489999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                            ...++++|||.+...........++.
T Consensus       121 ------------------------------------------------------~~~~~l~df~~~~~~~~~~~~~~~~~  146 (237)
T cd05576         121 ------------------------------------------------------RGHIQLTYFSRWSEVEDSCDGEAVEN  146 (237)
T ss_pred             ------------------------------------------------------CCCEEEecccchhccccccccCCcCc
Confidence                                                                  45689999998755555444455677


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||.+.+..++.++|+||+||++|+|++|..||.....                      .+.           .. 
T Consensus       147 ~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~----------------------~~~-----------~~-  192 (237)
T cd05576         147 MYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPS----------------------GIN-----------TH-  192 (237)
T ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCch----------------------hcc-----------cc-
Confidence            89999999888899999999999999999999988753310                      000           00 


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCc
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWL  297 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf  297 (329)
                                        .....+...+..+.+||.+||+.||++|+|+     .|+++||||
T Consensus       193 ------------------~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         193 ------------------TTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             ------------------cccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence                              0001122335678999999999999999996     999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.96  E-value=2.1e-29  Score=227.74  Aligned_cols=189  Identities=25%  Similarity=0.397  Sum_probs=146.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++...  ..+++..++.++.|++.||.|||+. +++||||||+||++..                  
T Consensus        74 ~v~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~nili~~------------------  132 (278)
T cd05606          74 FILDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHNR-FVVYRDLKPANILLDE------------------  132 (278)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCCCCHHHEEECC------------------
Confidence            589999 89999888754  4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                            ...++|+|||.+..... ......++
T Consensus       133 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  158 (278)
T cd05606         133 ------------------------------------------------------HGHVRISDLGLACDFSKKKPHASVGT  158 (278)
T ss_pred             ------------------------------------------------------CCCEEEccCcCccccCccCCcCcCCC
Confidence                                                                  34689999999854432 22344678


Q ss_pred             CCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ..|+|||.+.+. .++.++|+||+||++|+|++|..||......    ........                        
T Consensus       159 ~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~----~~~~~~~~------------------------  210 (278)
T cd05606         159 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK----DKHEIDRM------------------------  210 (278)
T ss_pred             cCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc----chHHHHHH------------------------
Confidence            999999999754 6899999999999999999999999754210    00000000                        


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhhhc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~~~  309 (329)
                                       .......++...+..+.+++.+||..+|++|+     ++.|+++||||....+.....+.
T Consensus       211 -----------------~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  270 (278)
T cd05606         211 -----------------TLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQK  270 (278)
T ss_pred             -----------------hhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCCchHhhhcc
Confidence                             00011112333467899999999999999999     99999999999998877766543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.96  E-value=3.8e-29  Score=231.96  Aligned_cols=208  Identities=29%  Similarity=0.471  Sum_probs=155.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...  ..++...+..++.|++.||+|||+. |++|+||+|+||++.                    
T Consensus        97 lv~e~~~~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~~-~i~H~dl~~~nill~--------------------  153 (335)
T PTZ00024         97 LVMDIMASDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHKW-YFMHRDLSPANIFIN--------------------  153 (335)
T ss_pred             EEEeccccCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHeEEC--------------------
Confidence            58999977999998764  3489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----------  149 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----------  149 (329)
                                                                          ....++|+|||.+....           
T Consensus       154 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  181 (335)
T PTZ00024        154 ----------------------------------------------------SKGICKIADFGLARRYGYPPYSDTLSKD  181 (335)
T ss_pred             ----------------------------------------------------CCCCEEECCccceeeccccccccccccc
Confidence                                                                24578999999885443           


Q ss_pred             ------cccccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          150 ------KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       150 ------~~~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                            .......++..|+|||.+.+. .++.++|+|||||++|+|++|..||...      ++...+..+...+|.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~------~~~~~~~~i~~~~~~~~~  255 (335)
T PTZ00024        182 ETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE------NEIDQLGRIFELLGTPNE  255 (335)
T ss_pred             ccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCch
Confidence                  111223457789999998765 4789999999999999999999999876      466778888888887766


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      ..+........+........       ......       ....+..+.+||++||+.+|++|||++|++.||||.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~  321 (335)
T PTZ00024        256 DNWPQAKKLPLYTEFTPRKP-------KDLKTI-------FPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPL  321 (335)
T ss_pred             hhCcchhhcccccccCcCCc-------ccHHHh-------CcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCC
Confidence            54433222111111000000       000111       1223567899999999999999999999999999987654


Q ss_pred             C
Q 020248          303 T  303 (329)
Q Consensus       303 ~  303 (329)
                      .
T Consensus       322 ~  322 (335)
T PTZ00024        322 P  322 (335)
T ss_pred             C
Confidence            4

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.96  E-value=2.3e-29  Score=228.74  Aligned_cols=183  Identities=28%  Similarity=0.411  Sum_probs=148.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||+. |++|+||+|.||++.                   
T Consensus        78 ~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH~~-~i~H~dl~p~nili~-------------------  135 (290)
T cd05580          78 LVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLHSL-DIVYRDLKPENLLLD-------------------  135 (290)
T ss_pred             EEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEC-------------------
Confidence            589999 99999999876  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........+++
T Consensus       136 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  162 (290)
T cd05580         136 -----------------------------------------------------SDGYIKITDFGFAKRVKGRTYTLCGTP  162 (290)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCccccCCCCCCCCCCc
Confidence                                                                 245799999999876655555567888


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||.+.+..++.++|+||||+++|+|++|..||....      .......+.                         
T Consensus       163 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~-------------------------  211 (290)
T cd05580         163 EYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN------PIQIYEKIL-------------------------  211 (290)
T ss_pred             cccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHh-------------------------
Confidence            9999999988888999999999999999999999997541      111111111                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                       ......+...+..+.++|.+||..||.+|+     +++|+++||||....+..-.
T Consensus       212 -----------------~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~  266 (290)
T cd05580         212 -----------------EGKVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALL  266 (290)
T ss_pred             -----------------cCCccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCCHHHHh
Confidence                             111112333467889999999999999999     99999999999988765543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.8e-29  Score=224.19  Aligned_cols=176  Identities=27%  Similarity=0.394  Sum_probs=137.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...++.++.|++.||.|||+ .|++|+||+|+||++.                   
T Consensus        81 ~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~-~~i~H~dl~p~nilv~-------------------  138 (263)
T cd06625          81 IFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHS-NMIVHRDIKGANILRD-------------------  138 (263)
T ss_pred             EEEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEEc-------------------
Confidence            579999 889999988653  48999999999999999999999 5999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       139 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  165 (263)
T cd06625         139 -----------------------------------------------------SAGNVKLGDFGASKRLQTICSSGTGMK  165 (263)
T ss_pred             -----------------------------------------------------CCCCEEEeecccceecccccccccccc
Confidence                                                                 24579999999885433211      2


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+||+||++|++++|..||....      .......+..   .              
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~---~--------------  222 (263)
T cd06625         166 SVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE------AMAAIFKIAT---Q--------------  222 (263)
T ss_pred             CCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc------hHHHHHHHhc---c--------------
Confidence            3456778999999999889999999999999999999999996541      1111111100   0              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                             ......+...+..+.+||++||..+|.+|||+.|+++||||
T Consensus       223 -----------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         223 -----------------------PTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             -----------------------CCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence                                   00011233446788999999999999999999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=8.6e-30  Score=238.52  Aligned_cols=182  Identities=30%  Similarity=0.383  Sum_probs=149.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||-+|-.|++.-++ .++.+..|..||.+.+.||+|||+ .+.||||||..|||+                     
T Consensus       103 LVMEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS-~~~IHRDiKAGNILL---------------------  159 (948)
T KOG0577|consen  103 LVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS-HNRIHRDIKAGNILL---------------------  159 (948)
T ss_pred             HHHHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHH-hhHHhhhccccceEe---------------------
Confidence            699999778888888776 579999999999999999999999 599999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                         .....|||+|||.|.. -.+..+++|||+
T Consensus       160 ---------------------------------------------------se~g~VKLaDFGSAsi-~~PAnsFvGTPy  187 (948)
T KOG0577|consen  160 ---------------------------------------------------SEPGLVKLADFGSASI-MAPANSFVGTPY  187 (948)
T ss_pred             ---------------------------------------------------cCCCeeeeccccchhh-cCchhcccCCcc
Confidence                                                               3356899999999843 456678999999


Q ss_pred             CcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |||||+++   .+.|+-++||||||++.-||...++|+..+      +....+-.|.+.-.+.                 
T Consensus       188 wMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnM------NAMSALYHIAQNesPt-----------------  244 (948)
T KOG0577|consen  188 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM------NAMSALYHIAQNESPT-----------------  244 (948)
T ss_pred             ccchhHheeccccccCCccceeeccchhhhhhhcCCCccCc------hHHHHHHHHHhcCCCC-----------------
Confidence            99999987   467999999999999999999999999888      3444444443311110                 


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                         +                    -+.+-+..|+.|+..||+.-|++|||.++++.|+|+..-...
T Consensus       245 ---L--------------------qs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~Rp~  287 (948)
T KOG0577|consen  245 ---L--------------------QSNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRFVLRERPP  287 (948)
T ss_pred             ---C--------------------CCchhHHHHHHHHHHHHhhCcccCCcHHHHhhcchhccCCCc
Confidence               0                    012236789999999999999999999999999999865443

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.96  E-value=2.6e-29  Score=228.85  Aligned_cols=183  Identities=31%  Similarity=0.521  Sum_probs=141.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.||+.||.|||++ |++||||||+||++.                   
T Consensus        96 lv~e~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nill~-------------------  152 (292)
T cd06658          96 VVMEFLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQ-GVIHRDIKSDSILLT-------------------  152 (292)
T ss_pred             EEEeCCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEc-------------------
Confidence            589999 88999988653   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       153 -----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~  179 (292)
T cd06658         153 -----------------------------------------------------SDGRIKLSDFGFCAQVSKEVPKRKSLV  179 (292)
T ss_pred             -----------------------------------------------------CCCCEEEccCcchhhcccccccCceee
Confidence                                                                 245789999998854332   122345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||...      +....+..+...+...   +            
T Consensus       180 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~------~~~~~~~~~~~~~~~~---~------------  238 (292)
T cd06658         180 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNE------PPLQAMRRIRDNLPPR---V------------  238 (292)
T ss_pred             cCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhcCCCc---c------------
Confidence            788999999998888999999999999999999999999754      2222222221110000   0            


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                              ......+..+.+|+++||..||++|||+.|+++||||.....++
T Consensus       239 ------------------------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~~  282 (292)
T cd06658         239 ------------------------KDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPS  282 (292)
T ss_pred             ------------------------ccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCCcc
Confidence                                    00112245788999999999999999999999999999876554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.96  E-value=3.9e-29  Score=223.79  Aligned_cols=177  Identities=31%  Similarity=0.502  Sum_probs=138.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||+|||+. |++|+||+|+||++.                   
T Consensus        79 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nil~~-------------------  136 (265)
T cd06631          79 IFMEFVPGGSISSILNRF--GPLPEPVFCKYTKQILDGVAYLHNN-CVVHRDIKGNNVMLM-------------------  136 (265)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHhEEEC-------------------
Confidence            589999 89999999765  3488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---------K  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---------~  150 (329)
                                                                           ....++|+|||.+....         .
T Consensus       137 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (265)
T cd06631         137 -----------------------------------------------------PNGIIKLIDFGCARRLAWVGLHGTHSN  163 (265)
T ss_pred             -----------------------------------------------------CCCeEEeccchhhHhhhhccccccccc
Confidence                                                                 24578999999885432         1


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ......++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+....+..|         
T Consensus       164 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~---------  228 (265)
T cd06631         164 MLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD------RLAAMFYIGAHRGLMP---------  228 (265)
T ss_pred             cccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC------hHHHHHHhhhccCCCC---------
Confidence            1223457889999999998889999999999999999999999997541      1111111111111110         


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                    ..+...+..+.+||++||+.+|++|||+.|+++||||
T Consensus       229 ------------------------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         229 ------------------------------RLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             ------------------------------CCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence                                          1223346788999999999999999999999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=3.7e-29  Score=231.88  Aligned_cols=207  Identities=28%  Similarity=0.479  Sum_probs=156.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++||+++.+|.+++...  ..+++..++.++.||+.||.|||+. |++||||||+||++.                    
T Consensus        83 ~~~e~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givH~dlkp~Nili~--------------------  139 (332)
T cd07857          83 LYEELMEADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIHSA-NVLHRDLKPGNLLVN--------------------  139 (332)
T ss_pred             EEEecccCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHeEEc--------------------
Confidence            36788888999988754  4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QFA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~~  153 (329)
                                                                          ....++|+|||.+.....       ...
T Consensus       140 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  167 (332)
T cd07857         140 ----------------------------------------------------ADCELKICDFGLARGFSENPGENAGFMT  167 (332)
T ss_pred             ----------------------------------------------------CCCCEEeCcCCCceeccccccccccccc
Confidence                                                                245789999999854432       112


Q ss_pred             cCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+ ..++.++|+||+||++|++++|..||...      +....+..+...+|.++..+........
T Consensus       168 ~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (332)
T cd07857         168 EYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK------DYVDQLNQILQVLGTPDEETLSRIGSPK  241 (332)
T ss_pred             CcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhhhhh
Confidence            3467889999998876 46899999999999999999999999876      4677889999999988776654332211


Q ss_pred             c--ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          233 D--YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       233 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .  +........      ...+..       .....+..+.+|+.+||+.||++|||+.|++.||||+...
T Consensus       242 ~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~  299 (332)
T cd07857         242 AQNYIRSLPNIP------KKPFES-------IFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWH  299 (332)
T ss_pred             HHHHHHhccccC------CcchHh-------hCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhc
Confidence            0  000000000      000011       1112356899999999999999999999999999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=4.1e-29  Score=227.93  Aligned_cols=181  Identities=30%  Similarity=0.515  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||+|||+. |++|+||||+||+++.                  
T Consensus        94 lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~-gi~H~dLkp~Nill~~------------------  151 (296)
T cd06654          94 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM------------------  151 (296)
T ss_pred             EeecccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcC------------------
Confidence            589999 89999998653   478999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...++|+|||.+.....   ......
T Consensus       152 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  177 (296)
T cd06654         152 ------------------------------------------------------DGSVKLTDFGFCAQITPEQSKRSTMV  177 (296)
T ss_pred             ------------------------------------------------------CCCEEECccccchhccccccccCccc
Confidence                                                                  34789999998854432   223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||.+.+..++.++|+||+||++|+|++|+.||....      ....+..+. ..+..+               
T Consensus       178 ~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~------~~~~~~~~~-~~~~~~---------------  235 (296)
T cd06654         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN------PLRALYLIA-TNGTPE---------------  235 (296)
T ss_pred             CCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCC------HHHhHHHHh-cCCCCC---------------
Confidence            7889999999998889999999999999999999999997542      111111110 000000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                             ...+...+..+.+|+++||..||++|||+.|+++||||.....
T Consensus       236 -----------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~  278 (296)
T cd06654         236 -----------------------LQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKP  278 (296)
T ss_pred             -----------------------CCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCC
Confidence                                   0012223467889999999999999999999999999987544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.96  E-value=3.1e-29  Score=226.22  Aligned_cols=188  Identities=28%  Similarity=0.400  Sum_probs=144.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||.|||++ |++||||+|+||++..                  
T Consensus        70 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~di~p~Nil~~~------------------  130 (277)
T cd05577          70 LVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR-RIVYRDLKPENVLLDD------------------  130 (277)
T ss_pred             EEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEECC------------------
Confidence            589999 89999999876545699999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                            ...++|+|||.+.....  ......+
T Consensus       131 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  156 (277)
T cd05577         131 ------------------------------------------------------HGNVRISDLGLAVELKGGKKIKGRAG  156 (277)
T ss_pred             ------------------------------------------------------CCCEEEccCcchhhhccCCccccccC
Confidence                                                                  45789999998854432  2223456


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||......      .....+.+                      
T Consensus       157 ~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~----------------------  208 (277)
T cd05577         157 TPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK------VEKEELKR----------------------  208 (277)
T ss_pred             CCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc------ccHHHHHh----------------------
Confidence            77899999998888999999999999999999999999764210      00000000                      


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~  305 (329)
                                      .........+...+..+.+||.+||+.||++||     ++.++++||||...++..-
T Consensus       209 ----------------~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~~~~~~  265 (277)
T cd05577         209 ----------------RTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRL  265 (277)
T ss_pred             ----------------ccccccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcCChhhh
Confidence                            000011112333467889999999999999999     8899999999998776443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=5.6e-29  Score=225.02  Aligned_cols=184  Identities=28%  Similarity=0.446  Sum_probs=139.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++.... ..++...+..++.|++.||.|||+. |++||||||+||++.                   
T Consensus        79 ~v~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~-~i~H~dlkp~nili~-------------------  137 (282)
T cd06643          79 ILIEFCAGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHEN-KIIHRDLKAGNILFT-------------------  137 (282)
T ss_pred             EEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEEc-------------------
Confidence            589999 788988776532 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       138 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  164 (282)
T cd06643         138 -----------------------------------------------------LDGDIKLADFGVSAKNTRTIQRRDSFI  164 (282)
T ss_pred             -----------------------------------------------------cCCCEEEcccccccccccccccccccc
Confidence                                                                 245799999999854432   223346


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++..|+|||++.     +..++.++|+||+||++|+|++|..||...      +.......+.....+            
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~------~~~~~~~~~~~~~~~------------  226 (282)
T cd06643         165 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL------NPMRVLLKIAKSEPP------------  226 (282)
T ss_pred             ccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc------CHHHHHHHHhhcCCC------------
Confidence            788999999984     345788999999999999999999999754      122222222111000            


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                 ....+...+..+.+||.+||..||++|||++++++||||......
T Consensus       227 ---------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  271 (282)
T cd06643         227 ---------------------------TLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVNSNK  271 (282)
T ss_pred             ---------------------------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEeccCCC
Confidence                                       000122235688999999999999999999999999999976443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3.3e-29  Score=223.61  Aligned_cols=182  Identities=30%  Similarity=0.433  Sum_probs=141.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||+. |++||||+|+||++..                  
T Consensus        74 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~i~H~dl~p~nil~~~------------------  132 (260)
T cd05611          74 LVMEYLNGGDCASLIKTL--GGLPEDWAKQYIAEVVLGVEDLHQR-GIIHRDIKPENLLIDQ------------------  132 (260)
T ss_pred             EEEeccCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEECC------------------
Confidence            589999 89999999765  3589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                            ...++|+|||.+..... .....++.
T Consensus       133 ------------------------------------------------------~~~~~l~dfg~~~~~~~-~~~~~~~~  157 (260)
T cd05611         133 ------------------------------------------------------TGHLKLTDFGLSRNGLE-NKKFVGTP  157 (260)
T ss_pred             ------------------------------------------------------CCcEEEeecccceeccc-cccCCCCc
Confidence                                                                  45689999998854433 23345778


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|++||.+.+..++.++|+||+|+++|+|++|..||....      .......+.......                   
T Consensus       158 ~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~-------------------  212 (260)
T cd05611         158 DYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET------PDAVFDNILSRRINW-------------------  212 (260)
T ss_pred             CccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhcccCC-------------------
Confidence            8999999988888999999999999999999999997542      222222211100000                   


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH---HHHhcCCCcCCCCC
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWLSLRNS  302 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta---~ell~hpwf~~~~~  302 (329)
                                         ........+..+.+++.+||+.+|++|||+   .|+++||||+...|
T Consensus       213 -------------------~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~~~~  259 (260)
T cd05611         213 -------------------PEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSINW  259 (260)
T ss_pred             -------------------CCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhcCCC
Confidence                               000112346789999999999999999955   79999999988765

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=6e-29  Score=224.26  Aligned_cols=205  Identities=31%  Similarity=0.523  Sum_probs=153.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++.... ..++...+..++.||+.||.|||+. |++|+||+|+||++.                    
T Consensus        75 ~v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili~--------------------  132 (283)
T cd05118          75 LVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSH-GILHRDLKPENLLIN--------------------  132 (283)
T ss_pred             EEEeccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHC-CeeecCcCHHHEEEC--------------------
Confidence            589999778988887753 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~  157 (329)
                                                                          ....++|+|||.+......   .....+
T Consensus       133 ----------------------------------------------------~~~~~~l~df~~~~~~~~~~~~~~~~~~  160 (283)
T cd05118         133 ----------------------------------------------------TEGVLKLADFGLARSFGSPVRPYTHYVV  160 (283)
T ss_pred             ----------------------------------------------------CCCcEEEeeeeeeEecCCCcccccCccC
Confidence                                                                2457999999998555432   223456


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+||+||++|+|++|+.||...      +..+.+..+.+.+|...+.++...........
T Consensus       161 ~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd05118         161 TRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGK------SEIDQLFKIFRTLGTPDPEVWPKFTSLARNYK  234 (283)
T ss_pred             cccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCchHhcccchhhhhhhh
Confidence            7789999999877 7899999999999999999999999776      45667777777777765555443322111000


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .  ....   ........       .....+..+.+||++||..||.+||++.++++||||
T Consensus       235 ~--~~~~---~~~~~~~~-------~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         235 F--SFPK---KAGMPLPK-------LFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             h--hhcc---ccccCHHH-------hhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            0  0000   00000111       122346789999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.96  E-value=5.4e-29  Score=228.45  Aligned_cols=213  Identities=23%  Similarity=0.362  Sum_probs=143.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||++++++|+||||+||++..                  
T Consensus        76 lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~------------------  135 (308)
T cd06615          76 ICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNS------------------  135 (308)
T ss_pred             EEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEec------------------
Confidence            589999 88999999865  458999999999999999999997458999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                            ...++|+|||.+..... ......++
T Consensus       136 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (308)
T cd06615         136 ------------------------------------------------------RGEIKLCDFGVSGQLIDSMANSFVGT  161 (308)
T ss_pred             ------------------------------------------------------CCcEEEccCCCcccccccccccCCCC
Confidence                                                                  34689999998854432 22345678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC--CCCccccC
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG--AQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~--~~~~~~~~  236 (329)
                      ..|+|||.+.+..++.++|+|||||++|+|++|..||....       ..   .....++..+.......  ........
T Consensus       162 ~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (308)
T cd06615         162 RSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPD-------AK---ELEAMFGRPVSEGEAKESHRPVSGHPP  231 (308)
T ss_pred             cCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcc-------hh---hHHHhhcCccccccccCCcccccCCCC
Confidence            89999999988889999999999999999999999996541       11   11122222111110000  00000000


Q ss_pred             ccCchhhhccccccchhHHHhhh-cCCC-hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDK-YRFS-ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .........    ...+...... ...+ ...+..+.+|+.+||..+|++|||+.|+++||||....
T Consensus       232 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~  294 (308)
T cd06615         232 DSPRPMAIF----ELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRAE  294 (308)
T ss_pred             CccchhhHH----HHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhcc
Confidence            000000000    0000010000 0011 12456799999999999999999999999999998643

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.96  E-value=5e-29  Score=227.91  Aligned_cols=205  Identities=28%  Similarity=0.437  Sum_probs=150.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|...+.... ..+++..++.++.|++.||+|||++ |++|+||||+||++.                    
T Consensus        92 lv~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~-~i~H~dl~p~nil~~--------------------  149 (311)
T cd07866          92 MVTPYMDHDLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHEN-HILHRDIKAANILID--------------------  149 (311)
T ss_pred             EEEecCCcCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC--------------------
Confidence            478999778887776532 3599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                          ....++|+|||.+......         
T Consensus       150 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  177 (311)
T cd07866         150 ----------------------------------------------------NQGILKIADFGLARPYDGPPPNPKGGGG  177 (311)
T ss_pred             ----------------------------------------------------CCCCEEECcCccchhccCCCcccccCCc
Confidence                                                                3457899999988543321         


Q ss_pred             -----cccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          152 -----FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       152 -----~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                           .+...+++.|+|||.+.+. .++.++||||+||++|+|++|+.||.+.      ........+....+.+++..+
T Consensus       178 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  251 (311)
T cd07866         178 GGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGK------SDIDQLHLIFKLCGTPTEETW  251 (311)
T ss_pred             ccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChhhc
Confidence                 1222456789999998764 5889999999999999999999999876      456677778888887666554


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..+........... ....    .......       .......+.+|+++||..||++|||+.|+++||||
T Consensus       252 ~~~~~~~~~~~~~~-~~~~----~~~~~~~-------~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         252 PGWRSLPGCEGVHS-FTNY----PRTLEER-------FGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             hhhhhccccccccc-CCCC----CccHHHH-------cccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            44332222111000 0000    0001111       01123678999999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.96  E-value=2.3e-29  Score=233.37  Aligned_cols=188  Identities=19%  Similarity=0.342  Sum_probs=140.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..+++..++.++.|++.||+|||++ ||+||||||+||+++                   
T Consensus        78 lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~-~iiHrDlkp~Nill~-------------------  136 (331)
T cd05624          78 LVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQL-HYVHRDIKPDNVLLD-------------------  136 (331)
T ss_pred             EEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCchHHEEEc-------------------
Confidence            589999 999999998643 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       137 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  163 (331)
T cd05624         137 -----------------------------------------------------MNGHIRLADFGSCLKMNQDGTVQSSVA  163 (331)
T ss_pred             -----------------------------------------------------CCCCEEEEeccceeeccCCCceeeccc
Confidence                                                                 2457999999998554322    1234


Q ss_pred             CCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          156 IQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .|++.|+|||++.+     ..++.++|+||+||++|+|++|..||....      .......+......++         
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~~---------  228 (331)
T cd05624         164 VGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHEERFQ---------  228 (331)
T ss_pred             cCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCC------HHHHHHHHHcCCCccc---------
Confidence            68999999999876     457899999999999999999999997542      2222222211000000         


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~  305 (329)
                                .                  .......+..+.+||.+||..++.+  |++++++++||||...++..-
T Consensus       229 ----------~------------------p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~~~~~~  277 (331)
T cd05624         229 ----------F------------------PSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGIDWENI  277 (331)
T ss_pred             ----------C------------------CCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCCCHHHH
Confidence                      0                  0000123568899999999876544  468999999999998766544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-28  Score=222.07  Aligned_cols=202  Identities=31%  Similarity=0.509  Sum_probs=148.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++||+++++|.+++.......+++..+..++.|++.||.|||+. |++|+||+|+||++.                    
T Consensus        83 l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~-~i~h~~l~~~nili~--------------------  141 (287)
T cd07838          83 LVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH-RIVHRDLKPQNILVT--------------------  141 (287)
T ss_pred             EEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhEEEc--------------------
Confidence            57899977899988775444589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       142 ----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~  169 (287)
T cd07838         142 ----------------------------------------------------SDGQVKIADFGLARIYSFEMALTSVVVT  169 (287)
T ss_pred             ----------------------------------------------------cCCCEEEeccCcceeccCCccccccccc
Confidence                                                                245799999999865542  22334567


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC-CCccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA-QSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~  237 (329)
                      ..|+|||.+.+..++.++|+||+||++|+|++|.+||...      ...+.+..+.+..+.....-+.... .....+..
T Consensus       170 ~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (287)
T cd07838         170 LWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGT------SEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPS  243 (287)
T ss_pred             ccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCC------ChHHHHHHHHHHcCCCChHhcCCCcccchhhccc
Confidence            7899999999988999999999999999999999999765      3455666666555543221110000 00000000


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..         ......       ........+.+||++||..||.+||++.|+++||||
T Consensus       244 ~~---------~~~~~~-------~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         244 YT---------PRSFKS-------FVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             cc---------ccchhh-------hhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            00         000000       112335788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=6.8e-29  Score=224.82  Aligned_cols=187  Identities=28%  Similarity=0.493  Sum_probs=142.0

Q ss_pred             Cccccc-chhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ |++|..++.... ...+++..+..++.|++.||.|||++.|++|+||||+||+++                  
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~------------------  137 (286)
T cd06622          76 MCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVN------------------  137 (286)
T ss_pred             EEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEEC------------------
Confidence            589999 889999887642 135899999999999999999999645999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~  157 (329)
                                                                            ....++|+|||.+..... ......+
T Consensus       138 ------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~  163 (286)
T cd06622         138 ------------------------------------------------------GNGQVKLCDFGVSGNLVASLAKTNIG  163 (286)
T ss_pred             ------------------------------------------------------CCCCEEEeecCCcccccCCccccCCC
Confidence                                                                  245799999999855432 2233456


Q ss_pred             CCCCcchHHhhcC------CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          158 TRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       158 ~~~y~aPE~~~~~------~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      +..|+|||.+.+.      .++.++|+||+||++|+|++|..||....      .......+.......+          
T Consensus       164 ~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~----------  227 (286)
T cd06622         164 CQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET------YANIFAQLSAIVDGDP----------  227 (286)
T ss_pred             ccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcc------hhhHHHHHHHHhhcCC----------
Confidence            7889999998653      35889999999999999999999996541      1112222211111110          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                  ...+...+..+.+||.+||+.+|++||++.++++||||......
T Consensus       228 ----------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~~  271 (286)
T cd06622         228 ----------------------------PTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKNA  271 (286)
T ss_pred             ----------------------------CCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccCC
Confidence                                        11223346788999999999999999999999999999877654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=2e-29  Score=246.57  Aligned_cols=176  Identities=27%  Similarity=0.398  Sum_probs=142.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |.|||| |++|-+++.......|++.++..|+.++++|+++||. +.  |||||||.+|||+.                 
T Consensus       119 lLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~-~~pPiIHRDLKiENvLls-----------------  180 (738)
T KOG1989|consen  119 LLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHY-LKPPIIHRDLKIENVLLS-----------------  180 (738)
T ss_pred             eehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc-CCCccchhhhhhhheEEc-----------------
Confidence            679999 7999999998776779999999999999999999998 68  99999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----  152 (329)
                                                                             .....||||||.+.-.....     
T Consensus       181 -------------------------------------------------------~~g~~KLCDFGSatt~~~~~~~~~e  205 (738)
T KOG1989|consen  181 -------------------------------------------------------ADGNYKLCDFGSATTKILSPTSAQE  205 (738)
T ss_pred             -------------------------------------------------------CCCCEEeCcccccccccCCCccHHH
Confidence                                                                   35689999999984332211     


Q ss_pred             -------ccCCCCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          153 -------AEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       153 -------~~~~~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                             -....|+.|++||++.   +.+++.|+|||+|||+||-|+....||.....                      
T Consensus       206 ~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~----------------------  263 (738)
T KOG1989|consen  206 VNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK----------------------  263 (738)
T ss_pred             HHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc----------------------
Confidence                   1124588999999986   55799999999999999999999999987521                      


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCCh--hhHHHHHHHHhhccCCCCCCCcCHHHHhc-------
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE--TDAREFAEFLVPLLDFTPEKRPTAQQCLQ-------  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dll~~~L~~dP~~R~ta~ell~-------  293 (329)
                                                    -.|+...|.+|.  ..+..+.+||+.||+.||.+||++.+++.       
T Consensus       264 ------------------------------laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~  313 (738)
T KOG1989|consen  264 ------------------------------LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELAN  313 (738)
T ss_pred             ------------------------------eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhc
Confidence                                          122233333333  45789999999999999999999999875       


Q ss_pred             -CCCcCCCC
Q 020248          294 -HPWLSLRN  301 (329)
Q Consensus       294 -hpwf~~~~  301 (329)
                       +.|+..+.
T Consensus       314 ~~~~~~~~~  322 (738)
T KOG1989|consen  314 KPCPIPDIY  322 (738)
T ss_pred             CCCCccccc
Confidence             46776665

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=1.9e-28  Score=220.84  Aligned_cols=204  Identities=31%  Similarity=0.514  Sum_probs=155.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.|++.||+|||+. |++||||+|+||++.                    
T Consensus        75 ~v~e~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~~l~~~ni~~~--------------------  132 (282)
T cd07829          75 LVFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSH-RILHRDLKPQNILIN--------------------  132 (282)
T ss_pred             EEecCcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChheEEEc--------------------
Confidence            589999779999998763 3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       133 ----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~  160 (282)
T cd07829         133 ----------------------------------------------------RDGVLKLADFGLARAFGIPLRTYTHEVV  160 (282)
T ss_pred             ----------------------------------------------------CCCCEEEecCCcccccCCCccccCcccc
Confidence                                                                245789999998865443   2233445


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||.+.+. .++.++|+|||||++|++++|..||...      .....+..+.+.++...+..+..+.....+-.
T Consensus       161 ~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (282)
T cd07829         161 TLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD------SEIDQLFKIFQILGTPTEESWPGVTKLPDYKP  234 (282)
T ss_pred             CcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHhCCCcHHHHHhhcccccccc
Confidence            6789999998876 7899999999999999999999999765      46677788888888877766654433321111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ........      .....      . ...+..+.+||++||..||++||++.++++||||
T Consensus       235 ~~~~~~~~------~~~~~------~-~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         235 TFPKFPPK------DLEKV------L-PRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             cccccCcc------chHHh------c-ccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            11110000      00111      1 1125689999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.96  E-value=5.9e-29  Score=222.27  Aligned_cols=184  Identities=30%  Similarity=0.480  Sum_probs=144.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||+|||++ |++|+||+|+||++.                   
T Consensus        70 lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~-~~~h~dl~~~nilv~-------------------  127 (262)
T cd05572          70 MLMEYCLGGELWTILRDRG--LFDEYTARFYIACVVLAFEYLHNR-GIIYRDLKPENLLLD-------------------  127 (262)
T ss_pred             EEEecCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEEc-------------------
Confidence            589999 899999998753  489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....+
T Consensus       128 -----------------------------------------------------~~~~~~l~df~~~~~~~~~~~~~~~~~  154 (262)
T cd05572         128 -----------------------------------------------------SNGYVKLVDFGFAKKLKSGQKTWTFCG  154 (262)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCcccccCcccccccccC
Confidence                                                                 2457999999998655432  233467


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|++++|..||.....    +.......+..  +.                  
T Consensus       155 ~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~--~~------------------  210 (262)
T cd05572         155 TPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE----DPMEIYNDILK--GN------------------  210 (262)
T ss_pred             CcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC----CHHHHHHHHhc--cC------------------
Confidence            8889999999888899999999999999999999999976521    11111111110  00                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~  303 (329)
                                          .....+...+..+.+||.+||..+|++|+|     ++|+++||||+..+|.
T Consensus       211 --------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~  261 (262)
T cd05572         211 --------------------GKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNGFDWE  261 (262)
T ss_pred             --------------------CCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhCCCCC
Confidence                                011122333678999999999999999999     9999999999987764

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.96  E-value=1.3e-28  Score=218.93  Aligned_cols=177  Identities=26%  Similarity=0.401  Sum_probs=140.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+. |++|+||+|+||+++.                  
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~-~i~h~dl~~~nili~~------------------  136 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK-KILHRDIKSLNLFLDA------------------  136 (256)
T ss_pred             EEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEeC------------------
Confidence            589999 89999999876555689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       137 ------------------------------------------------------~~~~~l~df~~~~~~~~~~~~~~~~~  162 (256)
T cd08529         137 ------------------------------------------------------YDNVKIGDLGVAKLLSDNTNFANTIV  162 (256)
T ss_pred             ------------------------------------------------------CCCEEEcccccceeccCccchhhccc
Confidence                                                                  457899999988554332   22335


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|+|||||++|+|++|..||...      ++......+.+  +..+               
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~~~---------------  219 (256)
T cd08529         163 GTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDAN------NQGALILKIIR--GVFP---------------  219 (256)
T ss_pred             cCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHc--CCCC---------------
Confidence            678899999999988999999999999999999999999754      12221111110  0000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ..+...+..+.+++++||+.+|++||++.++++|||+
T Consensus       220 ------------------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         220 ------------------------PVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             ------------------------CCccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence                                    0122335689999999999999999999999999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.5e-29  Score=212.71  Aligned_cols=179  Identities=26%  Similarity=0.434  Sum_probs=152.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |++||. +++|+..+.......+++..+..+..|++.|+.|+|.+ +|+||||||+|+|+                    
T Consensus        99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k-~VIhRdiKpenlLl--------------------  157 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK-RVIHRDIKPENLLL--------------------  157 (281)
T ss_pred             EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC-CcccCCCCHHHhcc--------------------
Confidence            578999 89999999977667799999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-cccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-KQFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-~~~~~~~~~  158 (329)
                                                                          +....++++|||.+.... ......+||
T Consensus       158 ----------------------------------------------------g~~~~lkiAdfGwsV~~p~~kR~tlcgt  185 (281)
T KOG0580|consen  158 ----------------------------------------------------GSAGELKIADFGWSVHAPSNKRKTLCGT  185 (281)
T ss_pred             ----------------------------------------------------CCCCCeeccCCCceeecCCCCceeeecc
Confidence                                                                445679999999986553 344567999


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ..|.|||+..+...+..+|+|++|++.||++.|.+||...+      ..+....|                         
T Consensus       186 ~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~------~~etYkrI-------------------------  234 (281)
T KOG0580|consen  186 LDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQS------HSETYKRI-------------------------  234 (281)
T ss_pred             cccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhh------hHHHHHHH-------------------------
Confidence            99999999999999999999999999999999999998762      33333333                         


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                       ..-...++...+..+.|+|.+||..+|.+|.+..|++.|||+...
T Consensus       235 -----------------~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  235 -----------------RKVDLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPWIVAN  279 (281)
T ss_pred             -----------------HHccccCCcccChhHHHHHHHHhccCccccccHHHHhhhHHHHhc
Confidence                             333344556667899999999999999999999999999998753

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.96  E-value=1.2e-28  Score=222.72  Aligned_cols=205  Identities=30%  Similarity=0.512  Sum_probs=150.6

Q ss_pred             CcccccchhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLGDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~-~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||++++|.+++.... ...+++..+..++.|++.||.|||+. |++||||+|+||++.                   
T Consensus        75 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~h~dl~p~ni~~~-------------------  134 (284)
T cd07836          75 LVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN-RVLHRDLKPQNLLIN-------------------  134 (284)
T ss_pred             EEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEC-------------------
Confidence            589999778988887643 23589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       135 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  161 (284)
T cd07836         135 -----------------------------------------------------KRGELKLADFGLARAFGIPVNTFSNEV  161 (284)
T ss_pred             -----------------------------------------------------CCCcEEEeecchhhhhcCCcccccccc
Confidence                                                                 2457899999988544321   22345


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|++||.+.+. .++.++|+|||||++|+|++|..||.+.      +.......+.+..+.+....+........+.
T Consensus       162 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (284)
T cd07836         162 VTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGT------NNEDQLLKIFRIMGTPTESTWPGISQLPEYK  235 (284)
T ss_pred             ccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHhCCCChhhHHHHhcCchhc
Confidence            67889999998764 5789999999999999999999999876      3555666666666665554443332222111


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .......          ....   .......+..+.+++.+||+.||++|||+.|+++||||
T Consensus       236 ~~~~~~~----------~~~~---~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         236 PTFPRYP----------PQDL---QQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             ccccCCC----------hHHH---HHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            1111000          0000   00112235679999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-28  Score=222.51  Aligned_cols=206  Identities=33%  Similarity=0.531  Sum_probs=154.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+.+.......++...+..++.|++.||.|||++ |++|+||+|+||+++                    
T Consensus        75 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~dl~~~ni~i~--------------------  133 (283)
T cd07830          75 FVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH-GFFHRDLKPENLLVS--------------------  133 (283)
T ss_pred             EEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEc--------------------
Confidence            58999988999988876544689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       134 ----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~  161 (283)
T cd07830         134 ----------------------------------------------------GPEVVKIADFGLAREIRSRPPYTDYVST  161 (283)
T ss_pred             ----------------------------------------------------CCCCEEEeecccceeccCCCCcCCCCCc
Confidence                                                                345799999999865543  22345678


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ..|+|||++.+ ..++.++|+|||||++|+|++|..||...      ...+....+...+|.++...+............
T Consensus       162 ~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd07830         162 RWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGS------SEIDQLYKICSVLGTPTKQDWPEGYKLASKLGF  235 (283)
T ss_pred             ccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCC------ChHHHHHHHHHhcCCCChhhhhhHhhhhccccc
Confidence            88999998854 45789999999999999999999999776      456677778888888766544322111111100


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                        .....   ........       .......+.+|+++||+.+|++|||+.|++.||||
T Consensus       236 --~~~~~---~~~~~~~~-------~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         236 --RFPQF---APTSLHQL-------IPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             --ccccc---ccccHHHH-------cccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence              00000   00001111       11125679999999999999999999999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.96  E-value=3.5e-29  Score=231.69  Aligned_cols=218  Identities=23%  Similarity=0.315  Sum_probs=138.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.......++...+..++.|++.||+|||+. |++||||||+||++..                  
T Consensus        76 ~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivHrDlkp~Nill~~------------------  136 (328)
T cd08226          76 VISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN-GYIHRNIKASHILISG------------------  136 (328)
T ss_pred             EEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEeC------------------
Confidence            489999 78999998876545689999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                            ...++++||+.+......        
T Consensus       137 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (328)
T cd08226         137 ------------------------------------------------------DGLVSLSGLSHLYSLVRNGQKAKVVY  162 (328)
T ss_pred             ------------------------------------------------------CCcEEEechHHHhhhhccCccccccc
Confidence                                                                  335677777654222110        


Q ss_pred             --cccCCCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          152 --FAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       152 --~~~~~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                        .....++..|+|||++.+.  .++.++||||+||++|+|++|..||....      ....+  +....++....+...
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~------~~~~~--~~~~~~~~~~~~~~~  234 (328)
T cd08226         163 DFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDML------RTQML--LQKLKGPPYSPLDIT  234 (328)
T ss_pred             cccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcC------hHHHH--HHHhcCCCCCCcccc
Confidence              0011235579999999763  57899999999999999999999997652      21111  111112211111000


Q ss_pred             CC--CCccccCccCchhh-----hcccccc-c-hhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          228 GA--QSKDYFDRHGDLKR-----IRRLKFW-S-LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       228 ~~--~~~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                      ..  ......+.......     ....... . .....  .......++..+.+||++||++||++|||+.|+++||||.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~  312 (328)
T cd08226         235 TFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERL--RTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFK  312 (328)
T ss_pred             ccchhhhhhccchhhhhcccccchhccccccccccccc--cchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHH
Confidence            00  00000000000000     0000000 0 00000  0012334577899999999999999999999999999998


Q ss_pred             CCC
Q 020248          299 LRN  301 (329)
Q Consensus       299 ~~~  301 (329)
                      ...
T Consensus       313 ~~~  315 (328)
T cd08226         313 QVK  315 (328)
T ss_pred             HHH
Confidence            654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=9e-29  Score=221.52  Aligned_cols=175  Identities=31%  Similarity=0.506  Sum_probs=137.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||+. |++||||+|+||+++                   
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH~~-~ivH~di~p~nil~~-------------------  140 (267)
T cd06628          83 IFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLHNR-GIIHRDIKGANILVD-------------------  140 (267)
T ss_pred             EEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHhc-CcccccCCHHHEEEc-------------------
Confidence            589999 88999999875  3489999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (267)
T cd06628         141 -----------------------------------------------------NKGGIKISDFGISKKLEANSLSTKTNG  167 (267)
T ss_pred             -----------------------------------------------------CCCCEEecccCCCcccccccccCCccc
Confidence                                                                 2457899999988554421        


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....++..|+|||.+.+..++.++|+||+||++|+|++|..||....      ....+..+..   .           
T Consensus       168 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~---~-----------  227 (267)
T cd06628         168 ARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT------QLQAIFKIGE---N-----------  227 (267)
T ss_pred             cccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc------HHHHHHHHhc---c-----------
Confidence             112346788999999998889999999999999999999999997642      1111111110   0           


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                 .....+...+..+.++|++||+.||.+||++.|+++||||
T Consensus       228 ---------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         228 ---------------------------ASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             ---------------------------CCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence                                       0001122345788999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.96  E-value=9.2e-29  Score=223.32  Aligned_cols=206  Identities=33%  Similarity=0.506  Sum_probs=152.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++.... ..+++..+..++.||+.||+|||+. |++|+||+|+||+++                    
T Consensus        77 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~-~~~h~dl~p~nil~~--------------------  134 (287)
T cd07840          77 MVFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSN-GILHRDIKGSNILIN--------------------  134 (287)
T ss_pred             EEeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEEc--------------------
Confidence            589999779998887653 3589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~~  156 (329)
                                                                          ....++|+|||.+......    .....
T Consensus       135 ----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~  162 (287)
T cd07840         135 ----------------------------------------------------NDGVLKLADFGLARPYTKRNSADYTNRV  162 (287)
T ss_pred             ----------------------------------------------------CCCCEEEccccceeeccCCCcccccccc
Confidence                                                                3457899999998655433    23345


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+. .++.++|||||||++|+|++|+.||...      +....+..+.+..+.++...+........ +
T Consensus       163 ~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  235 (287)
T cd07840         163 ITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGS------TELEQLEKIFELCGSPTDENWPGVSKLPW-F  235 (287)
T ss_pred             cccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCchhhccccccchh-h
Confidence            57789999987754 5899999999999999999999999765      45667777777777766554433222100 0


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..   .. ...    .....+...  ....++..+.+++++||.++|++|||+.++++||||
T Consensus       236 ~~---~~-~~~----~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         236 EN---LK-PKK----PYKRRLREF--FKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             hh---cc-ccc----cchhHHHHH--hcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence            00   00 000    001111111  112246789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.96  E-value=8.6e-29  Score=224.80  Aligned_cols=180  Identities=32%  Similarity=0.421  Sum_probs=135.7

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ....+++..+..++.|++.||+|||+. |++|+||||+||++.                 
T Consensus       101 lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~dlkp~nili~-----------------  162 (291)
T cd06639         101 LVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN-RIIHRDVKGNNILLT-----------------  162 (291)
T ss_pred             EEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHEEEc-----------------
Confidence            589999 88999988642  224589999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                             ....++|+|||.+.....   ....
T Consensus       163 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  187 (291)
T cd06639         163 -------------------------------------------------------TEGGVKLVDFGVSAQLTSTRLRRNT  187 (291)
T ss_pred             -------------------------------------------------------CCCCEEEeecccchhcccccccccC
Confidence                                                                   244689999998854432   1223


Q ss_pred             CCCCCCCcchHHhhcC-----CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          155 EIQTRQYRAPEVILRA-----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~-----~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      ..++..|+|||.+...     .++.++|+||+||++|+|++|+.||....      ....+..+.   ...+..      
T Consensus       188 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~------~~~~~~~~~---~~~~~~------  252 (291)
T cd06639         188 SVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH------PVKTLFKIP---RNPPPT------  252 (291)
T ss_pred             ccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc------HHHHHHHHh---cCCCCC------
Confidence            4567889999997643     36899999999999999999999997652      222222111   110000      


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                                    ...+......+.+||.+||+++|++|||+.|+++||||+
T Consensus       253 ------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         253 ------------------------------LLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             ------------------------------CCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence                                          001112245789999999999999999999999999994

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=239.45  Aligned_cols=181  Identities=33%  Similarity=0.495  Sum_probs=148.8

Q ss_pred             ccccc-chhHHHHHHhhcCCCc--chHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGL--ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l--~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      -||-. |+||.+++...| +++  .+.++..+..||++||.|||.. .|+|||||.+|||++.-                
T Consensus       650 FMEqVPGGSLSsLLrskW-GPlKDNEstm~fYtkQILeGLkYLHen-~IVHRDIKGDNVLvNTy----------------  711 (1226)
T KOG4279|consen  650 FMEQVPGGSLSSLLRSKW-GPLKDNESTMNFYTKQILEGLKYLHEN-KIVHRDIKGDNVLVNTY----------------  711 (1226)
T ss_pred             EeecCCCCcHHHHHHhcc-CCCccchhHHHHHHHHHHHHhhhhhhc-ceeeccccCCcEEEeec----------------
Confidence            47888 999999999998 567  7889999999999999999995 99999999999999653                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  155 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~  155 (329)
                                                                             .+.+||.|||-+.+.-   ..+-++
T Consensus       712 -------------------------------------------------------SGvlKISDFGTsKRLAginP~TETF  736 (1226)
T KOG4279|consen  712 -------------------------------------------------------SGVLKISDFGTSKRLAGINPCTETF  736 (1226)
T ss_pred             -------------------------------------------------------cceEEecccccchhhccCCcccccc
Confidence                                                                   3578999999986543   234557


Q ss_pred             CCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .||..|||||++..+  .|+.++|||||||+..||.||++||....     ...   +.|.+                ..
T Consensus       737 TGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elg-----spq---AAMFk----------------VG  792 (1226)
T KOG4279|consen  737 TGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELG-----SPQ---AAMFK----------------VG  792 (1226)
T ss_pred             ccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecC-----Chh---Hhhhh----------------hc
Confidence            899999999999866  49999999999999999999999997652     111   11111                11


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .|+.                     -.+++.+.++++..||.+|+..||.+||+|.++|++||++..
T Consensus       793 myKv---------------------HP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  793 MYKV---------------------HPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             ceec---------------------CCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccC
Confidence            1222                     223677889999999999999999999999999999999976

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=1.3e-28  Score=228.59  Aligned_cols=154  Identities=24%  Similarity=0.374  Sum_probs=116.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHH
Q 020248           21 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  100 (329)
Q Consensus        21 ~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (329)
                      .+++..+..++.||+.||+|||++ ||+||||||+||++..                                       
T Consensus       170 ~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDiKp~Nil~~~---------------------------------------  209 (338)
T cd05102         170 PLTMEDLICYSFQVARGMEFLASR-KCIHRDLAARNILLSE---------------------------------------  209 (338)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCccceEEEcC---------------------------------------
Confidence            477888999999999999999995 9999999999999932                                       


Q ss_pred             HHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCcc
Q 020248          101 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFS  175 (329)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~  175 (329)
                                                       ...++|+|||.+......     .....++..|+|||++.+..++.+
T Consensus       210 ---------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  256 (338)
T cd05102         210 ---------------------------------NNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQ  256 (338)
T ss_pred             ---------------------------------CCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcc
Confidence                                             457899999998543211     112344678999999999899999


Q ss_pred             chHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhH
Q 020248          176 VDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR  254 (329)
Q Consensus       176 ~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +|||||||++|+|++ |..||.+..     ........+.  -|.                                   
T Consensus       257 sDiwslG~il~el~~~g~~pf~~~~-----~~~~~~~~~~--~~~-----------------------------------  294 (338)
T cd05102         257 SDVWSFGVLLWEIFSLGASPYPGVQ-----INEEFCQRLK--DGT-----------------------------------  294 (338)
T ss_pred             cCHHHHHHHHHHHHhCCCCCCCCCC-----ccHHHHHHHh--cCC-----------------------------------
Confidence            999999999999997 999997642     1111111110  000                                   


Q ss_pred             HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       255 ~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                          ....+...+..+.+|+.+||..||++|||+.|+++
T Consensus       295 ----~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         295 ----RMRAPENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                00112234567899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-29  Score=218.54  Aligned_cols=208  Identities=30%  Similarity=0.528  Sum_probs=158.5

Q ss_pred             cccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            2 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      |.|+|..+|+.++..-+  .++.+.++-+++||+.||.|||+ .+|.||||||.|+++                      
T Consensus       135 ~TELmQSDLHKIIVSPQ--~Ls~DHvKVFlYQILRGLKYLHs-A~ILHRDIKPGNLLV----------------------  189 (449)
T KOG0664|consen  135 LTELMQSDLHKIIVSPQ--ALTPDHVKVFVYQILRGLKYLHT-ANILHRDIKPGNLLV----------------------  189 (449)
T ss_pred             HHHHHHhhhhheeccCC--CCCcchhhhhHHHHHhhhHHHhh-cchhhccCCCccEEe----------------------
Confidence            56777778888888764  49999999999999999999999 699999999999999                      


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccCCC
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEEIQ  157 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~~~  157 (329)
                                                                        +++..+||+|||+++..+.    ..+..+.
T Consensus       190 --------------------------------------------------NSNCvLKICDFGLARvee~d~~~hMTqEVV  219 (449)
T KOG0664|consen  190 --------------------------------------------------NSNCILKICDFGLARTWDQRDRLNMTHEVV  219 (449)
T ss_pred             --------------------------------------------------ccCceEEecccccccccchhhhhhhHHHHH
Confidence                                                              3356789999999955442    3455566


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh-cCCCCcccc
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI-GGAQSKDYF  235 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~-~~~~~~~~~  235 (329)
                      |.+|+|||++.|. .|+...||||+||||.||+..+.+|...      ...+++..|.+++|++..+-.. ...-.+...
T Consensus       220 TQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq------~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~  293 (449)
T KOG0664|consen  220 TQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA------GPIEQLQMIIDLLGTPSQEAMKYACEGAKNHV  293 (449)
T ss_pred             HHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc------ChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHh
Confidence            8899999999986 6999999999999999999999999877      6889999999999998754432 111111000


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCC--hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      -..+       ....++    ...|..+  ..-..+.++++.++|.+||.+|++.++++.|++..+.+
T Consensus       294 LR~~-------~k~Ps~----~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  294 LRAG-------LRAPDT----QRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             hccC-------CCCCCc----cceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccccccccc
Confidence            0000       000000    1111122  23346788999999999999999999999999987643

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.96  E-value=6.3e-29  Score=224.59  Aligned_cols=188  Identities=24%  Similarity=0.391  Sum_probs=139.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..+      ..++...+..++.|++.||.|||+. |++|+||||+||+++                   
T Consensus        76 lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nill~-------------------  129 (279)
T cd06619          76 ICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYLWSL-KILHRDVKPSNMLVN-------------------  129 (279)
T ss_pred             EEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCCHHHEEEC-------------------
Confidence            589999 7777543      1378889999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......++
T Consensus       130 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  156 (279)
T cd06619         130 -----------------------------------------------------TRGQVKLCDFGVSTQLVNSIAKTYVGT  156 (279)
T ss_pred             -----------------------------------------------------CCCCEEEeeCCcceecccccccCCCCC
Confidence                                                                 245799999999865443 23345778


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhC-CCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-KMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~  237 (329)
                      ..|+|||.+.+..++.++|+||+||++|+|++|..||........  .... ..+.+... ..+                
T Consensus       157 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~--~~~~-~~~~~~~~~~~~----------------  217 (279)
T cd06619         157 NAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQG--SLMP-LQLLQCIVDEDP----------------  217 (279)
T ss_pred             hhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccc--ccch-HHHHHHHhccCC----------------
Confidence            899999999988899999999999999999999999975421000  0000 00000000 000                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                                           ........+..+.+|+.+||+.+|++||++.|+++||||...+..+...
T Consensus       218 ---------------------~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~~~~~~~~  266 (279)
T cd06619         218 ---------------------PVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQYNDGNAEV  266 (279)
T ss_pred             ---------------------CCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCcccccccCccHHH
Confidence                                 0000112345789999999999999999999999999999886665544

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.1e-28  Score=222.88  Aligned_cols=182  Identities=30%  Similarity=0.510  Sum_probs=139.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..+++..+..++.|++.||.|||++ |++|+||+|+||++.                   
T Consensus        79 lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~nili~-------------------  137 (280)
T cd06611          79 ILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSH-KVIHRDLKAGNILLT-------------------  137 (280)
T ss_pred             EEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEC-------------------
Confidence            589999 889999887643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       138 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  164 (280)
T cd06611         138 -----------------------------------------------------LDGDVKLADFGVSAKNKSTLQKRDTFI  164 (280)
T ss_pred             -----------------------------------------------------CCCCEEEccCccchhhcccccccceee
Confidence                                                                 245799999998754332   223345


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++..|+|||.+.     ..+++.++|+|||||++|+|++|..||....      ....+..+.  .+..|          
T Consensus       165 ~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~------~~~~~~~~~--~~~~~----------  226 (280)
T cd06611         165 GTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN------PMRVLLKIL--KSEPP----------  226 (280)
T ss_pred             cchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC------HHHHHHHHh--cCCCC----------
Confidence            788899999985     3357889999999999999999999997542      111111110  00000          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                 ....+...+..+.+||++||+.+|++|||+.++++||||....
T Consensus       227 ---------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (280)
T cd06611         227 ---------------------------TLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQS  269 (280)
T ss_pred             ---------------------------CcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhcccc
Confidence                                       0001222356788999999999999999999999999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.96  E-value=1.3e-28  Score=218.91  Aligned_cols=178  Identities=33%  Similarity=0.502  Sum_probs=137.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ |++|.+++.... ..++...+..++.|++.|+.|||+. |++|+||+|+||++.                   
T Consensus        75 l~~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~-~i~H~dl~~~ni~~~-------------------  133 (256)
T cd06612          75 IVMEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSN-KKIHRDIKAGNILLN-------------------  133 (256)
T ss_pred             EEEecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEC-------------------
Confidence            579999 789999987543 4589999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       134 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  160 (256)
T cd06612         134 -----------------------------------------------------EEGQAKLADFGVSGQLTDTMAKRNTVI  160 (256)
T ss_pred             -----------------------------------------------------CCCcEEEcccccchhcccCcccccccc
Confidence                                                                 2456899999998654432   22345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||....      .......+   ....+               
T Consensus       161 ~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~------~~~~~~~~---~~~~~---------------  216 (256)
T cd06612         161 GTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIH------PMRAIFMI---PNKPP---------------  216 (256)
T ss_pred             CCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcc------hhhhhhhh---ccCCC---------------
Confidence            6788999999998899999999999999999999999997542      11111000   00000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                           .....+...+..+.+||.+||+.||++|||+.|+++||||
T Consensus       217 ---------------------~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         217 ---------------------PTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             ---------------------CCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence                                 0000112234678999999999999999999999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.96  E-value=1.3e-28  Score=223.22  Aligned_cols=192  Identities=27%  Similarity=0.406  Sum_probs=141.5

Q ss_pred             CcccccchhHHHHHHh---hcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKY---SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~---~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      ++|||++.+|.++...   .....++...+..++.|++.||+|||++.|++||||||+||++.                 
T Consensus        80 ~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~-----------------  142 (288)
T cd06616          80 ICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLD-----------------  142 (288)
T ss_pred             EEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEc-----------------
Confidence            4789997777665432   22355899999999999999999999745999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEE  155 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~  155 (329)
                                                                             ....++|+|||.+.....  .....
T Consensus       143 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  167 (288)
T cd06616         143 -------------------------------------------------------RNGNIKLCDFGISGQLVDSIAKTRD  167 (288)
T ss_pred             -------------------------------------------------------cCCcEEEeecchhHHhccCCccccc
Confidence                                                                   234699999999854432  22334


Q ss_pred             CCCCCCcchHHhhcC---CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          156 IQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~---~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      .++..|+|||.+.+.   .++.++|+||+||++|+|++|..||....        .....+.+.....+..+        
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~--------  231 (288)
T cd06616         168 AGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN--------SVFDQLTQVVKGDPPIL--------  231 (288)
T ss_pred             cCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc--------hHHHHHhhhcCCCCCcC--------
Confidence            678899999999876   68999999999999999999999997541        11122222211111000        


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                                ........+.++.+||.+||+.||++|||+.|+++||||....+..+.
T Consensus       232 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~~~~~~~~  279 (288)
T cd06616         232 --------------------------SNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKDYEERNVD  279 (288)
T ss_pred             --------------------------CCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhchhhcchh
Confidence                                      000112245689999999999999999999999999999886655443

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.96  E-value=7.3e-29  Score=221.02  Aligned_cols=179  Identities=34%  Similarity=0.515  Sum_probs=141.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||+|||+. |++|+||+|+||++.                   
T Consensus        70 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~di~~~nil~~-------------------  127 (265)
T cd05579          70 LVMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSN-GIIHRDLKPDNILID-------------------  127 (265)
T ss_pred             EEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHc-CeecCCCCHHHeEEc-------------------
Confidence            589999 889999998753  589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                           ....++|+|||.+......        
T Consensus       128 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  154 (265)
T cd05579         128 -----------------------------------------------------SNGHLKLTDFGLSKVGLVRRQINLNDD  154 (265)
T ss_pred             -----------------------------------------------------CCCCEEEEecccchhcccCcccccccc
Confidence                                                                 3457899999988543321        


Q ss_pred             ---cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          152 ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       152 ---~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                         .....++..|+|||.+....++.++|+|||||++|++++|..||....      .......+..  +.         
T Consensus       155 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~--~~---------  217 (265)
T cd05579         155 EKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGET------PEEIFQNILN--GK---------  217 (265)
T ss_pred             cccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhc--CC---------
Confidence               223456778999999988889999999999999999999999997542      2222111111  00         


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChh--hHHHHHHHHhhccCCCCCCCcCH---HHHhcCCCcCCCCC
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSET--DAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWLSLRNS  302 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dll~~~L~~dP~~R~ta---~ell~hpwf~~~~~  302 (329)
                                                     ...+..  .+..+.+|+++||+.+|++|||+   .|+++||||+.++|
T Consensus       218 -------------------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~~~~  265 (265)
T cd05579         218 -------------------------------IEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKGIDW  265 (265)
T ss_pred             -------------------------------cCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccCCCC
Confidence                                           011111  25788999999999999999999   99999999998765

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=1.2e-28  Score=229.39  Aligned_cols=209  Identities=27%  Similarity=0.458  Sum_probs=142.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++...   .+++..++.++.||+.||.|||+. |++||||||+||+++..                  
T Consensus        93 lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~-givH~dikp~Nili~~~------------------  150 (342)
T cd07854          93 IVQEYMETDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANVFINTE------------------  150 (342)
T ss_pred             EEeecccccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEcCC------------------
Confidence            58999977898888653   489999999999999999999995 99999999999999321                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~~  154 (329)
                                                                           ...++|+|||.+......      ...
T Consensus       151 -----------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~  177 (342)
T cd07854         151 -----------------------------------------------------DLVLKIGDFGLARIVDPHYSHKGYLSE  177 (342)
T ss_pred             -----------------------------------------------------CceEEECCcccceecCCcccccccccc
Confidence                                                                 236899999998654321      122


Q ss_pred             CCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC-CCCc
Q 020248          155 EIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG-AQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~-~~~~  232 (329)
                      ..++..|+|||.+.+ ..++.++|+|||||++|+|++|..||...      +.......+............... ....
T Consensus       178 ~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (342)
T cd07854         178 GLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGA------HELEQMQLILESVPVVREEDRNELLNVIP  251 (342)
T ss_pred             ccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCChHHhhhhhhhhh
Confidence            356778999998765 46889999999999999999999999765      233332222222221111111000 0000


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      .....      ............       ....+.++.+||++||++||++|||+.|+++||||+....+
T Consensus       252 ~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~~~~  309 (342)
T cd07854         252 SFVRN------DGGEPRRPLRDL-------LPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCYSCP  309 (342)
T ss_pred             hhhhh------cccccCCCHHHH-------ccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccccCC
Confidence            00000      000000011111       12345678999999999999999999999999999865433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=1.3e-28  Score=223.94  Aligned_cols=185  Identities=32%  Similarity=0.514  Sum_probs=139.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++.... ..++...+..++.|++.|+.|||+. |++||||||+||++.                   
T Consensus        86 lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~Nili~-------------------  144 (292)
T cd06644          86 IMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSM-KIIHRDLKAGNVLLT-------------------  144 (292)
T ss_pred             EEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcC-CeeecCCCcceEEEc-------------------
Confidence            589999 888888776543 4589999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       145 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  171 (292)
T cd06644         145 -----------------------------------------------------LDGDIKLADFGVSAKNVKTLQRRDSFI  171 (292)
T ss_pred             -----------------------------------------------------CCCCEEEccCccceeccccccccceec
Confidence                                                                 234799999998754322   223345


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++..|+|||.+.     ...++.++|+|||||++|+|++|..||....      .......+   ....++         
T Consensus       172 ~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~------~~~~~~~~---~~~~~~---------  233 (292)
T cd06644         172 GTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN------PMRVLLKI---AKSEPP---------  233 (292)
T ss_pred             CCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc------HHHHHHHH---hcCCCc---------
Confidence            678999999885     3457889999999999999999999996541      11111111   111000         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                                 ....+...+..+.+||++||..||++||++.|+++||||....++.
T Consensus       234 ---------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  279 (292)
T cd06644         234 ---------------------------TLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNR  279 (292)
T ss_pred             ---------------------------cCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccccch
Confidence                                       0001122345789999999999999999999999999999887665

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=225.31  Aligned_cols=176  Identities=25%  Similarity=0.435  Sum_probs=146.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||. |+.|.|++....  .|++.+++++++||.+|+.|||.+ +|+|||||.+|||+                    
T Consensus       130 ivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHkn-rVvHRDLKLENILL--------------------  186 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKN-RVVHRDLKLENILL--------------------  186 (668)
T ss_pred             EEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhc-cceecccchhheee--------------------
Confidence            689999 999999999874  499999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +.+..++|+|||++-.+.  .-..+++|
T Consensus       187 ----------------------------------------------------D~N~NiKIADFGLSNly~~~kfLqTFCG  214 (668)
T KOG0611|consen  187 ----------------------------------------------------DQNNNIKIADFGLSNLYADKKFLQTFCG  214 (668)
T ss_pred             ----------------------------------------------------cCCCCeeeeccchhhhhccccHHHHhcC
Confidence                                                                446789999999994443  34467899


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++-|.+||++.|.+| ++.+|-||||+++|.|+.|..||.+.      +....+..|.                .+.|  
T Consensus       215 SPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~------Dhk~lvrQIs----------------~GaY--  270 (668)
T KOG0611|consen  215 SPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR------DHKRLVRQIS----------------RGAY--  270 (668)
T ss_pred             CcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc------hHHHHHHHhh----------------cccc--
Confidence            999999999999998 68999999999999999999999887      2222222221                1111  


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                               .....+..+.-||+-||..||++|.|+.+|..|=|+.-.
T Consensus       271 -------------------------rEP~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNwg  309 (668)
T KOG0611|consen  271 -------------------------REPETPSDASGLIRWMLMVNPERRATIEDIASHWWVNWG  309 (668)
T ss_pred             -------------------------cCCCCCchHHHHHHHHHhcCcccchhHHHHhhhheeecc
Confidence                                     122335677899999999999999999999999888743

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-28  Score=221.29  Aligned_cols=180  Identities=32%  Similarity=0.514  Sum_probs=141.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.|+.|||++ +++|+||+|+||++.                   
T Consensus        76 ~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i~-------------------  132 (274)
T cd06609          76 IIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEE-GKIHRDIKAANILLS-------------------  132 (274)
T ss_pred             EEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEC-------------------
Confidence            589999 88999998864   589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       133 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (274)
T cd06609         133 -----------------------------------------------------EEGDVKLADFGVSGQLTSTMSKRNTFV  159 (274)
T ss_pred             -----------------------------------------------------CCCCEEEcccccceeeccccccccccc
Confidence                                                                 2457899999998555432   23446


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+..   ..+               
T Consensus       160 ~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~------~~~~~~~~~~---~~~---------------  215 (274)
T cd06609         160 GTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH------PMRVLFLIPK---NNP---------------  215 (274)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc------hHHHHHHhhh---cCC---------------
Confidence            6778999999998889999999999999999999999997541      1111111110   000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChh-hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                             ...... .+..+.+++.+||..+|++|||+.++++||||+.....
T Consensus       216 -----------------------~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~~~~  260 (274)
T cd06609         216 -----------------------PSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKKT  260 (274)
T ss_pred             -----------------------CCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCCCcc
Confidence                                   000111 35678999999999999999999999999999886544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.96  E-value=1.6e-28  Score=218.56  Aligned_cols=177  Identities=24%  Similarity=0.409  Sum_probs=140.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.|+.|||+. |++|+||+|+||++..                  
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~l~~~nil~~~------------------  136 (256)
T cd08218          76 IVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFLTK------------------  136 (256)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC------------------
Confidence            589999 89999999875544588999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       137 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  162 (256)
T cd08218         137 ------------------------------------------------------DGTIKLGDFGIARVLNSTVELARTCI  162 (256)
T ss_pred             ------------------------------------------------------CCCEEEeeccceeecCcchhhhhhcc
Confidence                                                                  446899999998654332   12345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||.+.+..++.++|+||+||++|+|++|..||...      +.......+.  .|..+               
T Consensus       163 ~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~------~~~~~~~~~~--~~~~~---------------  219 (256)
T cd08218         163 GTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG------NMKNLVLKII--RGSYP---------------  219 (256)
T ss_pred             CCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC------CHHHHHHHHh--cCCCC---------------
Confidence            778899999999888999999999999999999999999654      1222211110  11110               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ..+...+..+.++|.+||+.+|.+||++.|+++||||
T Consensus       220 ------------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         220 ------------------------PVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             ------------------------CCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence                                    1223346689999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.5e-28  Score=249.47  Aligned_cols=201  Identities=24%  Similarity=0.389  Sum_probs=142.8

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhh------CCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRE------LGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~------~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      |||||| |++|.+++....  ...+++..+..|+.||+.||.|||+.      .+|+|+||||+|||+............
T Consensus        91 IVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~  170 (1021)
T PTZ00266         91 ILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITA  170 (1021)
T ss_pred             EEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccc
Confidence            589999 889999987642  24599999999999999999999982      049999999999999542110000000


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  150 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-  150 (329)
                      ..                                                       ........++|+|||++..... 
T Consensus       171 ~~-------------------------------------------------------~n~ng~~iVKLsDFGlAr~l~~~  195 (1021)
T PTZ00266        171 QA-------------------------------------------------------NNLNGRPIAKIGDFGLSKNIGIE  195 (1021)
T ss_pred             cc-------------------------------------------------------cccCCCCceEEccCCcccccccc
Confidence            00                                                       0001234689999999865432 


Q ss_pred             -ccccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          151 -QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                       ......|++.|+|||++.+  ..++.++||||||||+|+|++|..||...      +....+...   +...|.     
T Consensus       196 s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~------~~~~qli~~---lk~~p~-----  261 (1021)
T PTZ00266        196 SMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKA------NNFSQLISE---LKRGPD-----  261 (1021)
T ss_pred             ccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcC------CcHHHHHHH---HhcCCC-----
Confidence             2234468999999999975  35889999999999999999999999754      222221111   111000     


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                       ......+..+.+||..||..+|.+|||+.|+|.||||.....+
T Consensus       262 ---------------------------------lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i~~p  304 (1021)
T PTZ00266        262 ---------------------------------LPIKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNVGPP  304 (1021)
T ss_pred             ---------------------------------CCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhcCCC
Confidence                                             0001225678999999999999999999999999999866543

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.96  E-value=2.1e-28  Score=221.37  Aligned_cols=205  Identities=29%  Similarity=0.472  Sum_probs=147.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..+....  ..++...+..++.||+.||+|||+. |++|+||+|+||+++                   
T Consensus        77 lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~-~i~h~~l~p~ni~~~-------------------  134 (286)
T cd07846          77 LVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFCHSH-NIIHRDIKPENILVS-------------------  134 (286)
T ss_pred             EEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEC-------------------
Confidence            589999 77777766554  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       135 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (286)
T cd07846         135 -----------------------------------------------------QSGVVKLCDFGFARTLAAPGEVYTDYV  161 (286)
T ss_pred             -----------------------------------------------------CCCcEEEEeeeeeeeccCCccccCccc
Confidence                                                                 245789999998854332   222345


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||++.+. .++.++|+||+||++|+|++|..||...      .....+..+.+..+.+++........... +
T Consensus       162 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  234 (286)
T cd07846         162 ATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD------SDIDQLYHIIKCLGNLIPRHQEIFQKNPL-F  234 (286)
T ss_pred             ceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCC------chHHHHHHHHHHhCCCchhhHHHhccchH-h
Confidence            67889999998764 4788999999999999999999999754      35667777777777765443321111100 0


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .....      ..........    ......+..+.+|+++||..+|++|||+.++++||||
T Consensus       235 ~~~~~------~~~~~~~~~~----~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         235 AGMRL------PEVKEIEPLE----KRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             hcccc------ccccCcchHH----HhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            00000      0000000000    0122346789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-28  Score=220.62  Aligned_cols=179  Identities=33%  Similarity=0.476  Sum_probs=136.1

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.|++.||.|||+. |++|+||+|+||+++                 
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~-~i~H~~l~p~ni~~~-----------------  147 (275)
T cd06608          86 LVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN-KVIHRDIKGQNILLT-----------------  147 (275)
T ss_pred             EEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEEc-----------------
Confidence            589999 889999987643  35689999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                             ....++|+|||.+.....   ....
T Consensus       148 -------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~  172 (275)
T cd06608         148 -------------------------------------------------------KNAEVKLVDFGVSAQLDSTLGRRNT  172 (275)
T ss_pred             -------------------------------------------------------cCCeEEECCCccceecccchhhhcC
Confidence                                                                   245799999998854432   2233


Q ss_pred             CCCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          155 EIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      ..++..|+|||.+..     ..++.++|||||||++|++++|..||....      ....+..+.   ...++       
T Consensus       173 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~---~~~~~-------  236 (275)
T cd06608         173 FIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH------PMRALFKIP---RNPPP-------  236 (275)
T ss_pred             ccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc------hHHHHHHhh---ccCCC-------
Confidence            457888999999864     347889999999999999999999996541      111111111   00000       


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                   ....+...+..+.+||.+||..||++|||+.++++|||+
T Consensus       237 -----------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         237 -----------------------------TLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             -----------------------------CCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence                                         000111235678999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=9.7e-29  Score=225.60  Aligned_cols=182  Identities=30%  Similarity=0.536  Sum_probs=140.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||.|||+. |++||||||+||++.                   
T Consensus        93 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~-~i~H~dL~p~Nili~-------------------  149 (297)
T cd06656          93 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSN-QVIHRDIKSDNILLG-------------------  149 (297)
T ss_pred             EeecccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 89999998653   488899999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       150 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  176 (297)
T cd06656         150 -----------------------------------------------------MDGSVKLTDFGFCAQITPEQSKRSTMV  176 (297)
T ss_pred             -----------------------------------------------------CCCCEEECcCccceEccCCccCcCccc
Confidence                                                                 2457999999988544322   22346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||.+.+..++.++|+||+||++|++++|..||.....      ...+..+ ...+..                
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~------~~~~~~~-~~~~~~----------------  233 (297)
T cd06656         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP------LRALYLI-ATNGTP----------------  233 (297)
T ss_pred             CCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc------chheeee-ccCCCC----------------
Confidence            78899999999998899999999999999999999999965421      0000000 000000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            ....+...+..+.+|+.+||..+|++|||+.++++||||......
T Consensus       234 ----------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~~  278 (297)
T cd06656         234 ----------------------ELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPL  278 (297)
T ss_pred             ----------------------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhcccccc
Confidence                                  000122335678899999999999999999999999999866543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=1.7e-28  Score=223.96  Aligned_cols=180  Identities=31%  Similarity=0.559  Sum_probs=140.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++...   .+++..+..++.|++.||+|||+. |++||||||+||+++                   
T Consensus        93 lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~-~i~H~dL~p~Nili~-------------------  149 (296)
T cd06655          93 VVMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHAN-QVIHRDIKSDNVLLG-------------------  149 (296)
T ss_pred             EEEEecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 89999988753   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       150 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  176 (296)
T cd06655         150 -----------------------------------------------------MDGSVKLTDFGFCAQITPEQSKRSTMV  176 (296)
T ss_pred             -----------------------------------------------------CCCCEEEccCccchhcccccccCCCcC
Confidence                                                                 2457999999987544321   22346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||....      ....+..+.. .+. +               
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~------~~~~~~~~~~-~~~-~---------------  233 (296)
T cd06655         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN------PLRALYLIAT-NGT-P---------------  233 (296)
T ss_pred             CCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh-cCC-c---------------
Confidence            7789999999998889999999999999999999999997642      2221111110 000 0               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                            ....+...+..+.+||++||..||++|||+.+++.||||....
T Consensus       234 ----------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         234 ----------------------ELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             ----------------------ccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhcc
Confidence                                  0001222356788999999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.6e-28  Score=244.19  Aligned_cols=199  Identities=25%  Similarity=0.407  Sum_probs=159.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| ||+|..++....  .+++.-++.++.-|+.||..+|+ +|+|||||||+|||+                    
T Consensus       152 lVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~-mgyVHRDiKPDNvLl--------------------  208 (1317)
T KOG0612|consen  152 LVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS-MGYVHRDIKPDNVLL--------------------  208 (1317)
T ss_pred             EEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh-ccceeccCCcceeEe--------------------
Confidence            699999 999999999874  69999999999999999999999 899999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                          +..++++|+|||...++..    .....
T Consensus       209 ----------------------------------------------------d~~GHikLADFGsClkm~~dG~V~s~~a  236 (1317)
T KOG0612|consen  209 ----------------------------------------------------DKSGHIKLADFGSCLKMDADGTVRSSVA  236 (1317)
T ss_pred             ----------------------------------------------------cccCcEeeccchhHHhcCCCCcEEeccc
Confidence                                                                5578999999999866652    23456


Q ss_pred             CCCCCCcchHHhh----c-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          156 IQTRQYRAPEVIL----R-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       156 ~~~~~y~aPE~~~----~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      +|||.|.+||++.    + +.|+..+|.||+||++|||+.|..||...             .++++.|.|-..       
T Consensus       237 VGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad-------------slveTY~KIm~h-------  296 (1317)
T KOG0612|consen  237 VGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD-------------SLVETYGKIMNH-------  296 (1317)
T ss_pred             cCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH-------------HHHHHHHHHhch-------
Confidence            8999999999986    2 46999999999999999999999999653             233333332110       


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCC--hhhHHHHHHHHhhccCCCCCCCcC---HHHHhcCCCcCCCCCChh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dll~~~L~~dP~~R~t---a~ell~hpwf~~~~~~~~  305 (329)
                                            +    ....+|  ...+.++.+||.+++. +|+.|..   +.++-+||||.+..|.+=
T Consensus       297 ----------------------k----~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~HpFF~g~~W~~i  349 (1317)
T KOG0612|consen  297 ----------------------K----ESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNHPFFEGIDWDNI  349 (1317)
T ss_pred             ----------------------h----hhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhCccccCCChhhh
Confidence                                  0    011122  2357899999999887 7999999   999999999999999555


Q ss_pred             hhhcCCCccccccccc
Q 020248          306 ETKNKSNVEKVDVGMS  321 (329)
Q Consensus       306 ~~~~~~~~~~~~~~~~  321 (329)
                      ....-+.|=.|+.-.+
T Consensus       350 R~~~pP~vPevssd~D  365 (1317)
T KOG0612|consen  350 RESVPPVVPEVSSDDD  365 (1317)
T ss_pred             hhcCCCCCCcCCCCCc
Confidence            5555556666655443

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=3.9e-28  Score=221.41  Aligned_cols=205  Identities=26%  Similarity=0.422  Sum_probs=150.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.|++.||+|||+. |++|+||+|+||++.                    
T Consensus        93 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~i~H~dl~p~nili~--------------------  150 (302)
T cd07864          93 LVFEYMDHDLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHKK-NFLHRDIKCSNILLN--------------------  150 (302)
T ss_pred             EEEcccCccHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC--------------------
Confidence            589999768888777542 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEEI  156 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~~  156 (329)
                                                                          ....++|+|||.+......    .....
T Consensus       151 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  178 (302)
T cd07864         151 ----------------------------------------------------NKGQIKLADFGLARLYNSEESRPYTNKV  178 (302)
T ss_pred             ----------------------------------------------------CCCcEEeCcccccccccCCcccccccce
Confidence                                                                2457999999998554321    12234


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+. .++.++||||+||++|+|++|++||...      +....+..+.+..|..+...+........+.
T Consensus       179 ~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (302)
T cd07864         179 ITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQAN------QELAQLELISRLCGSPCPAVWPDVIKLPYFN  252 (302)
T ss_pred             eccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChhhccccccccccc
Confidence            56789999988754 5789999999999999999999999765      4667777788877776655543322221111


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      .........     .....       .....+..+.+|+.+||+.||++|||+.++++||||
T Consensus       253 ~~~~~~~~~-----~~~~~-------~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         253 TMKPKKQYR-----RRLRE-------EFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             ccccccccc-----cchhh-------hcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            111100000     00000       011235688999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.96  E-value=1.7e-28  Score=219.82  Aligned_cols=178  Identities=33%  Similarity=0.458  Sum_probs=134.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  +.+++..+..++.|++.|+.|||+. |++|+||||+||++.                   
T Consensus        83 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili~-------------------  140 (267)
T cd06645          83 ICMEFCGGGSLQDIYHVT--GPLSESQIAYVSRETLQGLYYLHSK-GKMHRDIKGANILLT-------------------  140 (267)
T ss_pred             EEEeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC-------------------
Confidence            589999 78999998765  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (267)
T cd06645         141 -----------------------------------------------------DNGHVKLADFGVSAQITATIAKRKSFI  167 (267)
T ss_pred             -----------------------------------------------------CCCCEEECcceeeeEccCccccccccc
Confidence                                                                 2457899999998554322   23346


Q ss_pred             CCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          157 QTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       157 ~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      |+..|+|||.+.   ...++.++|+||+||++|+|++|..||....      ....+..+.. ....+..          
T Consensus       168 ~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~------~~~~~~~~~~-~~~~~~~----------  230 (267)
T cd06645         168 GTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH------PMRALFLMTK-SNFQPPK----------  230 (267)
T ss_pred             CcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc------chhhHHhhhc-cCCCCCc----------
Confidence            788999999985   4458899999999999999999999986542      1111111100 0000000          


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  296 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpw  296 (329)
                                        ..        .....+..+.+|+.+||..+|++|||++++++|||
T Consensus       231 ------------------~~--------~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         231 ------------------LK--------DKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             ------------------cc--------ccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence                              00        00012457889999999999999999999999999

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.96  E-value=2.6e-28  Score=218.80  Aligned_cols=176  Identities=27%  Similarity=0.415  Sum_probs=134.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ |++|.+++....  .++...+..++.|++.||+|||+ .|++||||+|+||++.                   
T Consensus        83 l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~-~~i~H~~l~p~nil~~-------------------  140 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHS-NMIVHRDIKGANILRD-------------------  140 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHh-CCeeeCCCCHHHEEEC-------------------
Confidence            478999 889999997653  48899999999999999999999 5999999999999992                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                           ....++|+|||.+......      ..
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (266)
T cd06651         141 -----------------------------------------------------SAGNVKLGDFGASKRLQTICMSGTGIR  167 (266)
T ss_pred             -----------------------------------------------------CCCCEEEccCCCccccccccccCCccc
Confidence                                                                 2457999999988544321      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+||+||++|+|++|..||....      ....+..+   ....             
T Consensus       168 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~------~~~~~~~~---~~~~-------------  225 (266)
T cd06651         168 SVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYE------AMAAIFKI---ATQP-------------  225 (266)
T ss_pred             cCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccc------hHHHHHHH---hcCC-------------
Confidence            2346778999999998889999999999999999999999997541      11111111   0000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                              .....+......+.+|+ +||..+|++|||++|+++||||.
T Consensus       226 ------------------------~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         226 ------------------------TNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             ------------------------CCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence                                    00011223356778888 57778999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.96  E-value=3.4e-28  Score=217.72  Aligned_cols=181  Identities=29%  Similarity=0.520  Sum_probs=138.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.||+.||.|||++ |++|+||+|+||++...                 
T Consensus        80 ~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~LH~~-~i~H~~i~~~nil~~~~-----------------  139 (268)
T cd06630          80 LFVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYLHEN-QIIHRDVKGANLLIDST-----------------  139 (268)
T ss_pred             EEEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCC-----------------
Confidence            589999 89999998764  4589999999999999999999995 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------F  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------~  152 (329)
                                                                            ...++|+|||.+......       .
T Consensus       140 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  165 (268)
T cd06630         140 ------------------------------------------------------GQRLRIADFGAAARLAAKGTGAGEFQ  165 (268)
T ss_pred             ------------------------------------------------------CCEEEEcccccccccccccccCCccc
Confidence                                                                  235899999998655432       1


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....++..|+|||.+.+..++.++|+||+||++|+|++|..||....      .......+.+..-.             
T Consensus       166 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~-------------  226 (268)
T cd06630         166 GQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEK------HSNHLALIFKIASA-------------  226 (268)
T ss_pred             cccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCC------CcchHHHHHHHhcc-------------
Confidence            12356778999999988889999999999999999999999996431      11111111110000             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                              ......+...+..+.+++.+||..+|++|||+.|+++||||+
T Consensus       227 ------------------------~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         227 ------------------------TTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             ------------------------CCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence                                    000112334567899999999999999999999999999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=3.5e-28  Score=216.04  Aligned_cols=178  Identities=26%  Similarity=0.417  Sum_probs=139.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.|++|||++ |++|+||+|+||++...                 
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~~~~-----------------  137 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK-LILHRDLKTQNILLDKH-----------------  137 (256)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCC-----------------
Confidence            589999 88999999876545689999999999999999999995 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                            ...++|+|||.+......  .....+
T Consensus       138 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  163 (256)
T cd08220         138 ------------------------------------------------------KMVVKIGDFGISKILSSKSKAYTVVG  163 (256)
T ss_pred             ------------------------------------------------------CCEEEEccCCCceecCCCcccccccc
Confidence                                                                  235799999998655432  223467


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||....      .......+..  +.                  
T Consensus       164 ~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~------~~~~~~~~~~--~~------------------  217 (256)
T cd08220         164 TPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN------LPALVLKIMS--GT------------------  217 (256)
T ss_pred             CCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc------hHHHHHHHHh--cC------------------
Confidence            889999999998888999999999999999999999996542      1111111100  00                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                           ....+...+..+.+|+.+||..+|++|||+.|+++||||
T Consensus       218 ---------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         218 ---------------------FAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             ---------------------CCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence                                 001122345678999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.95  E-value=2e-28  Score=218.90  Aligned_cols=184  Identities=30%  Similarity=0.520  Sum_probs=141.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ |.+|.+++.... ..++...+..++.|++.|++|||+ . |++|+||+|+||+++.                 
T Consensus        76 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~-~i~H~dl~~~ni~~~~-----------------  136 (265)
T cd06605          76 ICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKH-KIIHRDVKPSNILVNS-----------------  136 (265)
T ss_pred             EEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCC-CeecCCCCHHHEEECC-----------------
Confidence            589999 699999998754 458999999999999999999998 6 9999999999999932                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~  157 (329)
                                                                             ...++|+|||.+...... .....+
T Consensus       137 -------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~~  161 (265)
T cd06605         137 -------------------------------------------------------RGQIKLCDFGVSGQLVNSLAKTFVG  161 (265)
T ss_pred             -------------------------------------------------------CCCEEEeecccchhhHHHHhhcccC
Confidence                                                                   457999999998554321 112567


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|++++|..||.....    ........+.......+                
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~----------------  221 (265)
T cd06605         162 TSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND----PPDGIFELLQYIVNEPP----------------  221 (265)
T ss_pred             ChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc----ccccHHHHHHHHhcCCC----------------
Confidence            7889999999998999999999999999999999999975421    00111111111111100                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChh-hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                            ...+.. .+..+.+||.+||..||++|||+.+++.||||+..
T Consensus       222 ----------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~~  263 (265)
T cd06605         222 ----------------------PRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKKY  263 (265)
T ss_pred             ----------------------CCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhcc
Confidence                                  001111 46679999999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=4.3e-28  Score=238.90  Aligned_cols=203  Identities=20%  Similarity=0.254  Sum_probs=134.3

Q ss_pred             Cccccc-chhHHHHHHhhcCC------------------CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFL-GDSLLRLIKYSRYK------------------GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~------------------~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      |||||+ +++|.+++......                  ......+..++.||+.||.|||++ ||+||||||+|||++.
T Consensus       212 LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~-gIiHRDLKP~NILl~~  290 (566)
T PLN03225        212 LVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST-GIVHRDVKPQNIIFSE  290 (566)
T ss_pred             EEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC-CEEeCcCCHHHEEEeC
Confidence            589999 78999988754210                  012345678999999999999995 9999999999999942


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEee
Q 020248           62 TIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVD  141 (329)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D  141 (329)
                      .                                                                       ...++|+|
T Consensus       291 ~-----------------------------------------------------------------------~~~~KL~D  299 (566)
T PLN03225        291 G-----------------------------------------------------------------------SGSFKIID  299 (566)
T ss_pred             C-----------------------------------------------------------------------CCcEEEEe
Confidence            1                                                                       34689999


Q ss_pred             cCccccccc----ccccCCCCCCCcchHHhhcCC----------------------CCccchHHHHHHHHHHHHhCCcCC
Q 020248          142 FGNACRANK----QFAEEIQTRQYRAPEVILRAG----------------------YSFSVDMWSFACTAFELATGDMLF  195 (329)
Q Consensus       142 fg~a~~~~~----~~~~~~~~~~y~aPE~~~~~~----------------------~s~~~DiwslG~il~~l~~g~~pf  195 (329)
                      ||.+.....    ......+++.|+|||.+....                      +..++||||+||++|+|+++..++
T Consensus       300 FGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~  379 (566)
T PLN03225        300 LGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRS  379 (566)
T ss_pred             CCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCC
Confidence            999954332    223457788999999765332                      334569999999999999876543


Q ss_pred             CCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHh
Q 020248          196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLV  275 (329)
Q Consensus       196 ~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~  275 (329)
                      .        +....+..+....+.....|.......  .                  ..-................+||.
T Consensus       380 ~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~d~~~~~~~dLi~  431 (566)
T PLN03225        380 D--------SNLIQFNRQLKRNDYDLVAWRKLVEPR--A------------------SPDLRRGFEVLDLDGGAGWELLK  431 (566)
T ss_pred             c--------hHHHHHHHHHHhcCCcHHHHHHhhccc--c------------------chhhhhhhhhccccchHHHHHHH
Confidence            2        223333333333333222222110000  0                  00000001111222345679999


Q ss_pred             hccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          276 PLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       276 ~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      +||++||++|||+.|+|+||||......
T Consensus       432 ~mL~~dP~kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        432 SMMRFKGRQRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             HHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence            9999999999999999999999986654

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.95  E-value=4.3e-28  Score=219.99  Aligned_cols=180  Identities=29%  Similarity=0.537  Sum_probs=139.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||+|||+. |++||||+|+||++.                   
T Consensus        93 ~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  149 (285)
T cd06648          93 VVMEFLEGGALTDIVTHT---RMNEEQIATVCLAVLKALSFLHAQ-GVIHRDIKSDSILLT-------------------  149 (285)
T ss_pred             EEEeccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChhhEEEc-------------------
Confidence            579999 89999998873   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       150 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  176 (285)
T cd06648         150 -----------------------------------------------------SDGRVKLSDFGFCAQVSKEVPRRKSLV  176 (285)
T ss_pred             -----------------------------------------------------CCCcEEEcccccchhhccCCccccccc
Confidence                                                                 2457899999987443321   12245


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||...      +....+..+..   ..+..             
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~------~~~~~~~~~~~---~~~~~-------------  234 (285)
T cd06648         177 GTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNE------PPLQAMKRIRD---NLPPK-------------  234 (285)
T ss_pred             CCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCC------CHHHHHHHHHh---cCCCC-------------
Confidence            788999999998888999999999999999999999999654      12222221111   00000             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                             .......+..+.+||++||+++|++|||+.++++||||....
T Consensus       235 -----------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  276 (285)
T cd06648         235 -----------------------LKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAG  276 (285)
T ss_pred             -----------------------CcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCC
Confidence                                   000112346789999999999999999999999999998755

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.95  E-value=2.7e-28  Score=220.73  Aligned_cols=179  Identities=34%  Similarity=0.429  Sum_probs=134.7

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ....+++..+..++.|++.||.|||+. +++||||||+||++.                 
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nili~-----------------  158 (286)
T cd06638          97 LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN-KTIHRDVKGNNILLT-----------------  158 (286)
T ss_pred             EEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC-CccccCCCHHhEEEC-----------------
Confidence            589999 89999987643  224588899999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                             ....++|+|||.+.....   ....
T Consensus       159 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  183 (286)
T cd06638         159 -------------------------------------------------------TEGGVKLVDFGVSAQLTSTRLRRNT  183 (286)
T ss_pred             -------------------------------------------------------CCCCEEEccCCceeecccCCCcccc
Confidence                                                                   244689999999855432   2233


Q ss_pred             CCCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          155 EIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      ..++..|+|||.+..     ..++.++|+||+||++|+|++|..||....      ....+..+   ....+.       
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~------~~~~~~~~---~~~~~~-------  247 (286)
T cd06638         184 SVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH------PMRALFKI---PRNPPP-------  247 (286)
T ss_pred             ccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc------hhHHHhhc---cccCCC-------
Confidence            467889999998753     457899999999999999999999997541      11111100   000000       


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                   ....+...+..+.+||.+||+.||++|||+.|+++|+||
T Consensus       248 -----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         248 -----------------------------TLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             -----------------------------cccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence                                         000111224578999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=9.5e-28  Score=217.74  Aligned_cols=194  Identities=29%  Similarity=0.462  Sum_probs=140.7

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ....++...+..++.||+.||.|||+. |++|+||+|+||++..                
T Consensus        78 lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~-~i~H~dl~~~nil~~~----------------  140 (287)
T cd06621          78 IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR-KIIHRDIKPSNILLTR----------------  140 (287)
T ss_pred             EEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEec----------------
Confidence            589999 88999887643  224488899999999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~  156 (329)
                                                                              ...++|+|||.+...... .....
T Consensus       141 --------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~  164 (287)
T cd06621         141 --------------------------------------------------------KGQVKLCDFGVSGELVNSLAGTFT  164 (287)
T ss_pred             --------------------------------------------------------CCeEEEeecccccccccccccccc
Confidence                                                                    346899999998544322 22345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||..... ...........+   ....+..+.           
T Consensus       165 ~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~~~~~~---~~~~~~~~~-----------  229 (287)
T cd06621         165 GTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGE-PPLGPIELLSYI---VNMPNPELK-----------  229 (287)
T ss_pred             CCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccC-CCCChHHHHHHH---hcCCchhhc-----------
Confidence            67789999999988899999999999999999999999976521 000111111111   100000000           


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                           .........+..+.+||.+||..+|++|||+.|+++||||+....+
T Consensus       230 ---------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~~  275 (287)
T cd06621         230 ---------------------DEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQMKK  275 (287)
T ss_pred             ---------------------cCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCccccccccc
Confidence                                 0000001125678999999999999999999999999999665433

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.95  E-value=4.4e-28  Score=217.43  Aligned_cols=179  Identities=31%  Similarity=0.480  Sum_probs=134.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCc--chHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGL--ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l--~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.... ..+  +...+..++.||+.||+|||++ |++||||||+||++...               
T Consensus        82 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~h~dl~p~nil~~~~---------------  144 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDN-QIVHRDIKGDNVLVNTY---------------  144 (268)
T ss_pred             EEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEcCC---------------
Confidence            589999 899999998653 234  7788999999999999999995 99999999999999321               


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~  154 (329)
                                                                              ...++|+|||.+.....   ....
T Consensus       145 --------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~  168 (268)
T cd06624         145 --------------------------------------------------------SGVVKISDFGTSKRLAGINPCTET  168 (268)
T ss_pred             --------------------------------------------------------CCeEEEecchhheecccCCCcccc
Confidence                                                                    34689999998854322   1223


Q ss_pred             CCCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..++..|+|||.+.+.  .++.++|+||+|+++|+|++|..||.....     .......+ .                 
T Consensus       169 ~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~-----~~~~~~~~-~-----------------  225 (268)
T cd06624         169 FTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGE-----PQAAMFKV-G-----------------  225 (268)
T ss_pred             CCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccC-----hhhhHhhh-h-----------------
Confidence            3568899999998764  378999999999999999999999965310     00000000 0                 


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                            ........+......+.+|+++||..+|++|||+.|++.||||
T Consensus       226 ----------------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         226 ----------------------MFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             ----------------------hhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence                                  0000011233446788999999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.95  E-value=3.4e-28  Score=217.33  Aligned_cols=182  Identities=34%  Similarity=0.546  Sum_probs=138.1

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||++ |++|.+++..... ..++...+..++.|++.||.|||+ .|++|+||+|+||++..                 
T Consensus        76 iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~-~~i~h~~l~p~ni~~~~-----------------  137 (267)
T cd06610          76 LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS-NGQIHRDIKAGNILLGE-----------------  137 (267)
T ss_pred             EEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHhEEEcC-----------------
Confidence            589999 8999999986532 458999999999999999999999 59999999999999932                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------  151 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------  151 (329)
                                                                             ...++|+|||.+......       
T Consensus       138 -------------------------------------------------------~~~~~l~df~~~~~~~~~~~~~~~~  162 (267)
T cd06610         138 -------------------------------------------------------DGSVKIADFGVSASLADGGDRTRKV  162 (267)
T ss_pred             -------------------------------------------------------CCCEEEcccchHHHhccCccccccc
Confidence                                                                   346899999988544321       


Q ss_pred             cccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 FAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .....++..|+|||.+... .++.++|+|||||++|+|++|..||...+      ...   .+.+.....+..+      
T Consensus       163 ~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~------~~~---~~~~~~~~~~~~~------  227 (267)
T cd06610         163 RKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYP------PMK---VLMLTLQNDPPSL------  227 (267)
T ss_pred             cccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccC------hhh---hHHHHhcCCCCCc------
Confidence            1233578889999998877 78999999999999999999999997542      111   1111111111000      


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                           .                 ..     ......+..+.+|+++||..||++|||+.++++||||
T Consensus       228 -----~-----------------~~-----~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         228 -----E-----------------TG-----ADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             -----C-----------------Cc-----cccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence                 0                 00     0012335788999999999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=2.6e-28  Score=222.81  Aligned_cols=180  Identities=31%  Similarity=0.561  Sum_probs=139.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||+|||+. |++|+||+|+||++.                   
T Consensus        95 iv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dl~p~Nill~-------------------  151 (297)
T cd06659          95 VLMEFLQGGALTDIVSQT---RLNEEQIATVCESVLQALCYLHSQ-GVIHRDIKSDSILLT-------------------  151 (297)
T ss_pred             EEEecCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHeEEc-------------------
Confidence            589999 88999887653   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       152 -----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~  178 (297)
T cd06659         152 -----------------------------------------------------LDGRVKLSDFGFCAQISKDVPKRKSLV  178 (297)
T ss_pred             -----------------------------------------------------cCCcEEEeechhHhhccccccccccee
Confidence                                                                 245789999998854332   223346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|+.||...      .....+..+   .+..+..+            
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~------~~~~~~~~~---~~~~~~~~------------  237 (297)
T cd06659         179 GTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSD------SPVQAMKRL---RDSPPPKL------------  237 (297)
T ss_pred             cCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHH---hccCCCCc------------
Confidence            788999999999888999999999999999999999999754      222222211   11100000            


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              ......+..+.+||++||+.+|++|||+.|+++||||....
T Consensus       238 ------------------------~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         238 ------------------------KNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTG  278 (297)
T ss_pred             ------------------------cccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCC
Confidence                                    00112245788999999999999999999999999999764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-28  Score=227.54  Aligned_cols=186  Identities=28%  Similarity=0.431  Sum_probs=157.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +.||.| |+.|+..+....  .|+..+++.++.-+++|++|||++ |||.|||||+|+++                    
T Consensus       497 mLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k-~iIYRDLKPENllL--------------------  553 (732)
T KOG0614|consen  497 MLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRK-GIIYRDLKPENLLL--------------------  553 (732)
T ss_pred             hhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhc-CceeccCChhheee--------------------
Confidence            468998 999999999874  499999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +...-+||+|||+|....  ..+.+++|
T Consensus       554 ----------------------------------------------------d~~Gy~KLVDFGFAKki~~g~KTwTFcG  581 (732)
T KOG0614|consen  554 ----------------------------------------------------DNRGYLKLVDFGFAKKIGSGRKTWTFCG  581 (732)
T ss_pred             ----------------------------------------------------ccCCceEEeehhhHHHhccCCceeeecC
Confidence                                                                345689999999996654  56778899


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|.|||+++...-..++|.||||+++|||++|.+||.+.      ++......|..=                     
T Consensus       582 TpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~------dpmktYn~ILkG---------------------  634 (732)
T KOG0614|consen  582 TPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGV------DPMKTYNLILKG---------------------  634 (732)
T ss_pred             CcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC------chHHHHHHHHhh---------------------
Confidence            99999999999998999999999999999999999999987      333333333211                     


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~~  307 (329)
                                    .     ....+|....+.+.+||+++...+|.+|+-     +.||-+|-||.+++|..=..
T Consensus       635 --------------i-----d~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~  690 (732)
T KOG0614|consen  635 --------------I-----DKIEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRS  690 (732)
T ss_pred             --------------h-----hhhhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhcCChhhhhh
Confidence                          0     112355666788999999999999999995     89999999999999976443

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.95  E-value=4e-28  Score=219.15  Aligned_cols=185  Identities=29%  Similarity=0.456  Sum_probs=139.8

Q ss_pred             CcccccchhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||++++|.+++....  ...+++..+..++.||+.||+|||++.+++||||||+||++.                  
T Consensus        77 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~------------------  138 (283)
T cd06617          77 ICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLIN------------------  138 (283)
T ss_pred             EEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEEC------------------
Confidence            589999888988876532  235899999999999999999999844999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~  156 (329)
                                                                            ....++|+|||.+......  .....
T Consensus       139 ------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~  164 (283)
T cd06617         139 ------------------------------------------------------RNGQVKLCDFGISGYLVDSVAKTIDA  164 (283)
T ss_pred             ------------------------------------------------------CCCCEEEeeccccccccccccccccc
Confidence                                                                  2457999999998544322  22345


Q ss_pred             CCCCCcchHHhhc----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          157 QTRQYRAPEVILR----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       157 ~~~~y~aPE~~~~----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ++..|+|||.+.+    ..++.++|+||+||++|+|++|..||....     .....+.....  +..+           
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~~~~--~~~~-----------  226 (283)
T cd06617         165 GCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWK-----TPFQQLKQVVE--EPSP-----------  226 (283)
T ss_pred             CCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccc-----cCHHHHHHHHh--cCCC-----------
Confidence            7888999998865    457899999999999999999999996431     11122211110  0000           


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCC-ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                  .. ....+..+.+||++||..+|++|||+.++++||||......
T Consensus       227 ----------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  270 (283)
T cd06617         227 ----------------------------QLPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHLSK  270 (283)
T ss_pred             ----------------------------CCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcccc
Confidence                                        00 11235678999999999999999999999999999987644

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=5.7e-28  Score=221.19  Aligned_cols=184  Identities=29%  Similarity=0.404  Sum_probs=140.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..+..++.|++.||.|||+. |++||||||+||++..                  
T Consensus        78 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~NIll~~------------------  136 (305)
T cd05609          78 MVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHNY-GIVHRDLKPDNLLITS------------------  136 (305)
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHEEECC------------------
Confidence            589999 88999999765  4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...++|+|||.+.....         
T Consensus       137 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (305)
T cd05609         137 ------------------------------------------------------MGHIKLTDFGLSKIGLMSLTTNLYEG  162 (305)
T ss_pred             ------------------------------------------------------CCCEEEeeCCCccccCcCcccccccc
Confidence                                                                  45689999998742110         


Q ss_pred             ---------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          151 ---------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       151 ---------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                               ......++..|+|||.+.+..++.++|+|||||++|++++|..||.+..      ....+..+.......|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~  236 (305)
T cd05609         163 HIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEWP  236 (305)
T ss_pred             ccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccCCC
Confidence                     0011245778999999988889999999999999999999999997541      2222221111000000


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC---HHHHhcCCCcC
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPWLS  298 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t---a~ell~hpwf~  298 (329)
                                                             ......+..+.+||.+||+.||++|||   +.++++||||.
T Consensus       237 ---------------------------------------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~  277 (305)
T cd05609         237 ---------------------------------------EGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFL  277 (305)
T ss_pred             ---------------------------------------CccccCCHHHHHHHHHHhccChhhccCccCHHHHHhCcccc
Confidence                                                   001123567899999999999999998   79999999998


Q ss_pred             CCCCCh
Q 020248          299 LRNSTR  304 (329)
Q Consensus       299 ~~~~~~  304 (329)
                      ..++..
T Consensus       278 ~~~~~~  283 (305)
T cd05609         278 GLDWNG  283 (305)
T ss_pred             CCCHHH
Confidence            876655

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.95  E-value=6.5e-28  Score=214.66  Aligned_cols=177  Identities=27%  Similarity=0.450  Sum_probs=140.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.......++...+..++.|++.||.|||+ .|++|+||+|+||++..                  
T Consensus        76 ~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~-~~i~h~dl~p~ni~~~~------------------  136 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHK-AGILHRDIKTLNIFLTK------------------  136 (256)
T ss_pred             EEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCChHhEEEeC------------------
Confidence            479999 8999999987654568999999999999999999999 59999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---ccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---AEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~  156 (329)
                                                                            ...++|+|||.+.......   ....
T Consensus       137 ------------------------------------------------------~~~~kl~d~~~~~~~~~~~~~~~~~~  162 (256)
T cd08221         137 ------------------------------------------------------AGLIKLGDFGISKILGSEYSMAETVV  162 (256)
T ss_pred             ------------------------------------------------------CCCEEECcCcceEEcccccccccccC
Confidence                                                                  3468999999986544322   3456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||...      +.......+.  .|..+               
T Consensus       163 ~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~------~~~~~~~~~~--~~~~~---------------  219 (256)
T cd08221         163 GTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT------NPLNLVVKIV--QGNYT---------------  219 (256)
T ss_pred             CCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHH--cCCCC---------------
Confidence            788999999999888999999999999999999999999654      2222222221  11110               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ..+...+..+.+++.+||..+|.+|||+.|+++|||+
T Consensus       220 ------------------------~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         220 ------------------------PVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             ------------------------CCccccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence                                    0112235678999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-29  Score=220.66  Aligned_cols=181  Identities=32%  Similarity=0.496  Sum_probs=146.1

Q ss_pred             Ccccccc-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||||| +|+.+++.... .+|++.++..+++.-+.||+|||. +.-||||||..|||++.                  
T Consensus       105 IVMEYCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~-~~KIHRDIKAGNILLNT------------------  164 (502)
T KOG0574|consen  105 IVMEYCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHD-LKKIHRDIKAGNILLNT------------------  164 (502)
T ss_pred             eehhhcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHH-HHHHHhhcccccEEEcc------------------
Confidence            6999994 89999988765 679999999999999999999999 68999999999999944                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ....+|+|||.+-..+.   ......
T Consensus       165 ------------------------------------------------------~G~AKLADFGVAGQLTDTMAKRNTVI  190 (502)
T KOG0574|consen  165 ------------------------------------------------------DGIAKLADFGVAGQLTDTMAKRNTVI  190 (502)
T ss_pred             ------------------------------------------------------cchhhhhhccccchhhhhHHhhCccc
Confidence                                                                  56789999999966654   334568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|||||++.+..|..++||||||++.-||..|++||...-+         +..|..+=-.+|+              
T Consensus       191 GTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHP---------MRAIFMIPT~PPP--------------  247 (502)
T KOG0574|consen  191 GTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHP---------MRAIFMIPTKPPP--------------  247 (502)
T ss_pred             cCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccc---------cceeEeccCCCCC--------------
Confidence            99999999999999999999999999999999999999975411         1111100000110              


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                            ....+..-+.+|-||+++||...|++|.||..+++|||++..
T Consensus       248 ----------------------TF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA  289 (502)
T KOG0574|consen  248 ----------------------TFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNA  289 (502)
T ss_pred             ----------------------CCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCC
Confidence                                  011233446789999999999999999999999999999864

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.95  E-value=5.7e-28  Score=217.98  Aligned_cols=180  Identities=32%  Similarity=0.488  Sum_probs=141.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||+|||+. +++|+||+|+||++..                  
T Consensus        79 lv~e~~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~-~ivH~dl~p~Nil~~~------------------  136 (277)
T cd06640          79 IIMEYLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSE-KKIHRDIKAANVLLSE------------------  136 (277)
T ss_pred             EEEecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC-CccCcCCChhhEEEcC------------------
Confidence            589999 88999988753   488999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...++++|||.+.....   ......
T Consensus       137 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06640         137 ------------------------------------------------------QGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             ------------------------------------------------------CCCEEEcccccceeccCCcccccccc
Confidence                                                                  44689999999854432   122335


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+.   ..                 
T Consensus       163 ~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~------~~~~~~~~~---~~-----------------  216 (277)
T cd06640         163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMH------PMRVLFLIP---KN-----------------  216 (277)
T ss_pred             CcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcC------hHhHhhhhh---cC-----------------
Confidence            6778999999988889999999999999999999999997542      111110000   00                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                           .........+..+.+|+.+||+.+|++|||+.++++||||......
T Consensus       217 ---------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  262 (277)
T cd06640         217 ---------------------NPPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNAKK  262 (277)
T ss_pred             ---------------------CCCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhcchh
Confidence                                 0001223446788999999999999999999999999999876654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.95  E-value=3.3e-28  Score=225.88  Aligned_cols=212  Identities=33%  Similarity=0.497  Sum_probs=155.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|..++...   .++...+..++.||+.||.|||+. |++|+||+|+||+++                    
T Consensus        86 lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~-~i~H~dl~p~nill~--------------------  141 (337)
T cd07852          86 LVFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSG-NVIHRDLKPSNILLN--------------------  141 (337)
T ss_pred             EEecccccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc--------------------
Confidence            58999977999888764   478889999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--------cc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--------QF  152 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--------~~  152 (329)
                                                                          ....++|+|||.+.....        ..
T Consensus       142 ----------------------------------------------------~~~~~kl~d~g~~~~~~~~~~~~~~~~~  169 (337)
T cd07852         142 ----------------------------------------------------SDCRVKLADFGLARSLSELEENPENPVL  169 (337)
T ss_pred             ----------------------------------------------------CCCcEEEeeccchhccccccccccCcch
Confidence                                                                345799999998854322        11


Q ss_pred             ccCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          153 AEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....++..|+|||.+.+ ..++.++|+||+||++|+|++|+.||...      ........+....|..+...+......
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T cd07852         170 TDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGT------STLNQLEKIIEVIGPPSAEDIESIKSP  243 (337)
T ss_pred             hcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHHHHhh
Confidence            23457888999998865 45789999999999999999999999765      456677778888777665443322110


Q ss_pred             --ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          232 --KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                        ...++..+.      ........       .....+..+.+||.+||+.||++|||+.++++||||.....+..+.
T Consensus       244 ~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~~~~~  308 (337)
T cd07852         244 FAATMLDSLPS------RPRKPLDE-------LLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNPSDEP  308 (337)
T ss_pred             hHHHhhhhccc------ccccchhh-------hccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccCCCCC
Confidence              000000000      00000011       1112467899999999999999999999999999999876554443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.95  E-value=8.8e-28  Score=215.15  Aligned_cols=176  Identities=27%  Similarity=0.415  Sum_probs=135.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||++ |++|+||+|+||++.                   
T Consensus        83 ~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~~-------------------  140 (265)
T cd06652          83 IFMEHMPGGSIKDQLKSY--GALTENVTRKYTRQILEGVSYLHSN-MIVHRDIKGANILRD-------------------  140 (265)
T ss_pred             EEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEec-------------------
Confidence            479999 88999998765  3488899999999999999999995 999999999999983                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                           ....++|+|||.+.....      ...
T Consensus       141 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  167 (265)
T cd06652         141 -----------------------------------------------------SVGNVKLGDFGASKRLQTICLSGTGMK  167 (265)
T ss_pred             -----------------------------------------------------CCCCEEECcCccccccccccccccccc
Confidence                                                                 245789999998864432      122


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||....      ....   +.+......            
T Consensus       168 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~------~~~~---~~~~~~~~~------------  226 (265)
T cd06652         168 SVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE------AMAA---IFKIATQPT------------  226 (265)
T ss_pred             cCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc------hHHH---HHHHhcCCC------------
Confidence            3457789999999988889999999999999999999999996431      1111   111111100            


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                               ....+......+.++|++|+. +|++|||++|+++|||+.
T Consensus       227 -------------------------~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         227 -------------------------NPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             -------------------------CCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence                                     000123345678899999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.95  E-value=7.5e-28  Score=219.38  Aligned_cols=188  Identities=27%  Similarity=0.419  Sum_probs=140.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++.+|.+++.... ..++...+..++.|++.||+|||+..|++||||+|+||++.                    
T Consensus        91 ~v~e~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~--------------------  149 (296)
T cd06618          91 ICMELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLD--------------------  149 (296)
T ss_pred             EEeeccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEc--------------------
Confidence            589999888888887644 46899999999999999999999734999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       150 ----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~  177 (296)
T cd06618         150 ----------------------------------------------------ASGNVKLCDFGISGRLVDSKAKTRSAGC  177 (296)
T ss_pred             ----------------------------------------------------CCCCEEECccccchhccCCCcccCCCCC
Confidence                                                                245789999999855432  22233467


Q ss_pred             CCCcchHHhhcCC----CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          159 RQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       159 ~~y~aPE~~~~~~----~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..|+|||.+.+..    ++.++|+|||||++|+|++|+.||....     .....+..+   +.....            
T Consensus       178 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~~---~~~~~~------------  237 (296)
T cd06618         178 AAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCK-----TEFEVLTKI---LQEEPP------------  237 (296)
T ss_pred             ccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcch-----hHHHHHHHH---hcCCCC------------
Confidence            7899999987653    7899999999999999999999996531     111111111   111000            


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                                              ........+.++.+|+.+||..||++|||+.++++||||........
T Consensus       238 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~~  284 (296)
T cd06618         238 ------------------------SLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRYETAEV  284 (296)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhccchhHH
Confidence                                    00001123567899999999999999999999999999997654433

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=3.1e-28  Score=219.57  Aligned_cols=181  Identities=34%  Similarity=0.498  Sum_probs=139.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++..   ..++...+..++.|++.|+.|||++ |++|+||+|+||++..                  
T Consensus        79 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~-~ivH~dl~p~ni~i~~------------------  136 (277)
T cd06642          79 IIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLHSE-RKIHRDIKAANVLLSE------------------  136 (277)
T ss_pred             EEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHhcC-CeeccCCChheEEEeC------------------
Confidence            589999 8899998865   3488999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       137 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06642         137 ------------------------------------------------------QGDVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             ------------------------------------------------------CCCEEEccccccccccCcchhhhccc
Confidence                                                                  346899999998554321   12235


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+.   ...                
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~------~~~~~~~~~---~~~----------------  217 (277)
T cd06642         163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLH------PMRVLFLIP---KNS----------------  217 (277)
T ss_pred             CcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc------hhhHHhhhh---cCC----------------
Confidence            6788999999998889999999999999999999999986541      111110000   000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                            ........+..+.+|+.+||+.+|++|||+.|+++||||.......
T Consensus       218 ----------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  263 (277)
T cd06642         218 ----------------------PPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKT  263 (277)
T ss_pred             ----------------------CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHHHhhhH
Confidence                                  0001223356789999999999999999999999999998765443

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.95  E-value=6.1e-28  Score=217.15  Aligned_cols=174  Identities=32%  Similarity=0.511  Sum_probs=139.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |++|.+++...  ..++...+..++.|++.||.|||+. |++|+||+|+||++.                   
T Consensus        79 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~ql~~~l~~Lh~~-~~~H~dl~~~ni~i~-------------------  136 (280)
T cd05581          79 FVLEYAPNGELLQYIRKY--GSLDEKCTRFYAAEILLALEYLHSK-GIIHRDLKPENILLD-------------------  136 (280)
T ss_pred             EEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHeEEC-------------------
Confidence            589999 99999999875  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------  152 (329)
                                                                           ....++|+|||.+.......       
T Consensus       137 -----------------------------------------------------~~~~~~l~df~~~~~~~~~~~~~~~~~  163 (280)
T cd05581         137 -----------------------------------------------------KDMHIKITDFGTAKVLDPNSSPESNKG  163 (280)
T ss_pred             -----------------------------------------------------CCCCEEecCCccccccCCccccccCCC
Confidence                                                                 24578999999885443221       


Q ss_pred             ----------------ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHH
Q 020248          153 ----------------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  216 (329)
Q Consensus       153 ----------------~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~  216 (329)
                                      ....++..|+|||++....++.++|+|||||+++++++|..||....      .......+   
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~---  234 (280)
T cd05581         164 DATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN------EYLTFQKI---  234 (280)
T ss_pred             CCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHH---
Confidence                            12345778999999998889999999999999999999999997652      11111111   


Q ss_pred             hCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH----HHHh
Q 020248          217 IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCL  292 (329)
Q Consensus       217 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell  292 (329)
                                                             .......+...+..+.+|+++||+.+|++|||+    .+++
T Consensus       235 ---------------------------------------~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll  275 (280)
T cd05581         235 ---------------------------------------LKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELK  275 (280)
T ss_pred             ---------------------------------------HhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHh
Confidence                                                   111222344446789999999999999999999    9999


Q ss_pred             cCCCc
Q 020248          293 QHPWL  297 (329)
Q Consensus       293 ~hpwf  297 (329)
                      +||||
T Consensus       276 ~~~~~  280 (280)
T cd05581         276 AHPFF  280 (280)
T ss_pred             cCCCC
Confidence            99998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=1.3e-27  Score=216.34  Aligned_cols=189  Identities=28%  Similarity=0.378  Sum_probs=140.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  +.++...+..++.|++.||.|||+..|++|+||+|+||++..                  
T Consensus        80 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~------------------  139 (284)
T cd06620          80 MCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNS------------------  139 (284)
T ss_pred             EEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECC------------------
Confidence            589999 88999988764  358999999999999999999997448999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                            ...++|+|||.+..... ......++
T Consensus       140 ------------------------------------------------------~~~~~l~d~gl~~~~~~~~~~~~~~~  165 (284)
T cd06620         140 ------------------------------------------------------RGQIKLCDFGVSGELINSIADTFVGT  165 (284)
T ss_pred             ------------------------------------------------------CCcEEEccCCcccchhhhccCccccC
Confidence                                                                  45789999998754332 22334678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCC--chHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCE--DEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~--~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ..|+|||.+.+..++.++|+||+||++|++++|..||..........  .......+......                 
T Consensus       166 ~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  228 (284)
T cd06620         166 STYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQE-----------------  228 (284)
T ss_pred             cccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhc-----------------
Confidence            89999999988889999999999999999999999997653111000  00000100000000                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCC-hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFS-ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                           .....+ ...+..+.+|+.+||+.||++|||+.|+++|+||....
T Consensus       229 ---------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         229 ---------------------PPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             ---------------------cCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence                                 000011 12456789999999999999999999999999997644

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.8e-28  Score=217.59  Aligned_cols=185  Identities=28%  Similarity=0.475  Sum_probs=141.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||.|||+. |++|+||+|+||++.                   
T Consensus        79 lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~p~ni~i~-------------------  135 (277)
T cd06917          79 IIMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKV-GVIHRDIKAANILVT-------------------  135 (277)
T ss_pred             EEEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcCHHHEEEc-------------------
Confidence            589999 88999988653   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       136 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06917         136 -----------------------------------------------------NTGNVKLCDFGVAALLNQNSSKRSTFV  162 (277)
T ss_pred             -----------------------------------------------------CCCCEEEccCCceeecCCCcccccccc
Confidence                                                                 2457899999988654432   23346


Q ss_pred             CCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+ ..++.++|+|||||++|+|++|..||....      .......+   ....++             
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~------~~~~~~~~---~~~~~~-------------  220 (277)
T cd06917         163 GTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVD------AFRAMMLI---PKSKPP-------------  220 (277)
T ss_pred             CCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCC------hhhhhhcc---ccCCCC-------------
Confidence            7888999999875 457899999999999999999999996542      11000000   000000             


Q ss_pred             CccCchhhhccccccchhHHHhhhcCC-ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~  308 (329)
                                               .. ....+..+.+||++||+.||++|||+.|+++||||+..........
T Consensus       221 -------------------------~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~~~~~~~~  269 (277)
T cd06917         221 -------------------------RLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHSKTPVSIL  269 (277)
T ss_pred             -------------------------CCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhccccCchhhH
Confidence                                     00 1113568899999999999999999999999999988765544433

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=1.4e-27  Score=214.47  Aligned_cols=180  Identities=32%  Similarity=0.511  Sum_probs=136.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...++.++.||+.||.|||++ |++||||+|+||++.                   
T Consensus        85 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~~~nil~~-------------------  142 (272)
T cd06629          85 IFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLHSK-GILHRDLKADNLLVD-------------------  142 (272)
T ss_pred             EEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CeeecCCChhhEEEc-------------------
Confidence            589999 89999998875  3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                           ....++|+|||.+......     ...
T Consensus       143 -----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~  169 (272)
T cd06629         143 -----------------------------------------------------ADGICKISDFGISKKSDDIYDNDQNMS  169 (272)
T ss_pred             -----------------------------------------------------CCCeEEEeecccccccccccccccccc
Confidence                                                                 2457999999988544321     223


Q ss_pred             CCCCCCCcchHHhhcCC--CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~--~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..++..|+|||.+....  ++.++|+|||||++|++++|..||....      ....   +.+.....          ..
T Consensus       170 ~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~------~~~~---~~~~~~~~----------~~  230 (272)
T cd06629         170 MQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE------AIAA---MFKLGNKR----------SA  230 (272)
T ss_pred             ccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc------hHHH---HHHhhccc----------cC
Confidence            35678899999988654  8899999999999999999999996431      1111   11110000          00


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..                 .      ........+..+.+||.+||..+|++|||++++++||||
T Consensus       231 ~~-----------------~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         231 PP-----------------I------PPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             Cc-----------------C------CccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            00                 0      000112346789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=9.4e-29  Score=248.54  Aligned_cols=180  Identities=33%  Similarity=0.452  Sum_probs=148.0

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      -|||| ||+|.+++..+..  .++...+.+..|++.|++|||++ ||+||||||.||++..                   
T Consensus      1312 FMEyC~~GsLa~ll~~gri--~dE~vt~vyt~qll~gla~LH~~-gIVHRDIK~aNI~Ld~------------------- 1369 (1509)
T KOG4645|consen 1312 FMEYCEGGSLASLLEHGRI--EDEMVTRVYTKQLLEGLAYLHEH-GIVHRDIKPANILLDF------------------- 1369 (1509)
T ss_pred             HHHHhccCcHHHHHHhcch--hhhhHHHHHHHHHHHHHHHHHhc-CceecCCCccceeeec-------------------
Confidence            49999 9999999999754  78888899999999999999995 9999999999999933                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------cc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------FA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------~~  153 (329)
                                                                           ...+|++|||.|.....+       ..
T Consensus      1370 -----------------------------------------------------~g~iK~~DFGsa~ki~~~~~~~~~el~ 1396 (1509)
T KOG4645|consen 1370 -----------------------------------------------------NGLIKYGDFGSAVKIKNNAQTMPGELQ 1396 (1509)
T ss_pred             -----------------------------------------------------CCcEEeecccceeEecCchhcCCHHHH
Confidence                                                                 457999999999655433       23


Q ss_pred             cCCCCCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          154 EEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ..+||+.|||||++.+..   -.-+.|||||||++.||+||+.||...      ++..++...+-...+           
T Consensus      1397 ~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~------dne~aIMy~V~~gh~----------- 1459 (1509)
T KOG4645|consen 1397 SMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAEL------DNEWAIMYHVAAGHK----------- 1459 (1509)
T ss_pred             hhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhc------cchhHHHhHHhccCC-----------
Confidence            458899999999998653   567899999999999999999999877      455555444432222           


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                   .++|+..+.+.+|||.+||+-||++|.++.||++|-|-+....
T Consensus      1460 -----------------------------Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~d 1502 (1509)
T KOG4645|consen 1460 -----------------------------PQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCTD 1502 (1509)
T ss_pred             -----------------------------CCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHHhhccccccc
Confidence                                         2245556889999999999999999999999999998776543

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.7e-27  Score=210.85  Aligned_cols=174  Identities=34%  Similarity=0.526  Sum_probs=140.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |++|.+++....  .++...+..++.|++.|+.|||+ .+++|+||+|+||+++.                  
T Consensus        70 ~v~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~-~~~~H~~l~p~ni~~~~------------------  128 (250)
T cd05123          70 LVLEYAPGGELFSHLSKEG--RFSEERARFYAAEIVLALEYLHS-LGIIYRDLKPENILLDA------------------  128 (250)
T ss_pred             EEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHH-CCceecCCCcceEEEcC------------------
Confidence            589999 999999998763  48999999999999999999999 49999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       129 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  154 (250)
T cd05123         129 ------------------------------------------------------DGHIKLTDFGLAKELSSEGSRTNTFC  154 (250)
T ss_pred             ------------------------------------------------------CCcEEEeecCcceecccCCCcccCCc
Confidence                                                                  457899999998654432   33456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|++||...+..++.++|+|||||++|++++|..||....      .......+.                      
T Consensus       155 ~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~----------------------  206 (250)
T cd05123         155 GTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED------RKEIYEKIL----------------------  206 (250)
T ss_pred             CCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHh----------------------
Confidence            6788999999988888999999999999999999999996541      111111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH---HHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA---QQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta---~ell~hpwf  297 (329)
                                          ......+...+..+.+||++||..||++|||+   .++++||||
T Consensus       207 --------------------~~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         207 --------------------KDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence                                11122344446788999999999999999999   899999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.95  E-value=1.3e-27  Score=212.97  Aligned_cols=173  Identities=20%  Similarity=0.293  Sum_probs=134.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||+|||++ |++||||||+||+++                   
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~~-------------------  136 (256)
T cd05082          77 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN-NFVHRDLAARNVLVS-------------------  136 (256)
T ss_pred             EEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeccccchheEEEc-------------------
Confidence            589999 78999999876544588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........++.
T Consensus       137 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  163 (256)
T cd05082         137 -----------------------------------------------------EDNVAKVSDFGLTKEASSTQDTGKLPV  163 (256)
T ss_pred             -----------------------------------------------------CCCcEEecCCccceeccccCCCCccce
Confidence                                                                 245789999999865544333444566


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||++.+..++.++|||||||++|+|++ |..||....      .......+..   .                   
T Consensus       164 ~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~------~~~~~~~~~~---~-------------------  215 (256)
T cd05082         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK---G-------------------  215 (256)
T ss_pred             eecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc---C-------------------
Confidence            8999999988889999999999999999997 999986541      1111111100   0                   


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                         .....+...+..+.+++.+||+.+|++|||+.++++
T Consensus       216 -------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         216 -------------------YKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             -------------------CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                               000122334678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.95  E-value=1.7e-27  Score=214.85  Aligned_cols=177  Identities=21%  Similarity=0.395  Sum_probs=134.0

Q ss_pred             Cccccc-chhHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +||||+ |++|.+++.....     ..+++..+..++.||+.|++|||++ |++|+||||+||++...            
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~nil~~~~------------  152 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN-HFIHRDIAARNCLLTCK------------  152 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchheEEEecc------------
Confidence            589999 9999999987532     2488899999999999999999995 99999999999999432            


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc--
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--  152 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~--  152 (329)
                                                                               +....++|+|||.+.......  
T Consensus       153 ---------------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~  175 (277)
T cd05036         153 ---------------------------------------------------------GPGRVAKIADFGMARDIYRASYY  175 (277)
T ss_pred             ---------------------------------------------------------CCCcceEeccCccccccCCccce
Confidence                                                                     113468999999986543211  


Q ss_pred             ---ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          153 ---AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       153 ---~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                         .....+..|+|||++.+..++.++|||||||++|+|++ |..||....      .......+. ..+.         
T Consensus       176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~------~~~~~~~~~-~~~~---------  239 (277)
T cd05036         176 RKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRT------NQEVMEFVT-GGGR---------  239 (277)
T ss_pred             ecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHH-cCCc---------
Confidence               12223457999999998899999999999999999996 999997652      221111111 0000         


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                     ...+...+..+.+|+.+||+.+|++|||+.++++|
T Consensus       240 -------------------------------~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         240 -------------------------------LDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             -------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                           01122345688999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.95  E-value=6.4e-28  Score=216.13  Aligned_cols=178  Identities=31%  Similarity=0.442  Sum_probs=133.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++...  ..+++..+..++.|++.||.|||+. |++||||+|+||++.                   
T Consensus        83 iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~nill~-------------------  140 (267)
T cd06646          83 ICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLHSK-GKMHRDIKGANILLT-------------------  140 (267)
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEC-------------------
Confidence            589999 78999988754  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (267)
T cd06646         141 -----------------------------------------------------DNGDVKLADFGVAAKITATIAKRKSFI  167 (267)
T ss_pred             -----------------------------------------------------CCCCEEECcCccceeecccccccCccc
Confidence                                                                 2446899999998654322   22345


Q ss_pred             CCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          157 QTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       157 ~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ++..|+|||.+.   ...++.++|+||+||++|+|++|..||.....      ......+... ...+            
T Consensus       168 ~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~------~~~~~~~~~~-~~~~------------  228 (267)
T cd06646         168 GTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP------MRALFLMSKS-NFQP------------  228 (267)
T ss_pred             cCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch------hhhheeeecC-CCCC------------
Confidence            778999999985   34578899999999999999999999865421      0000000000 0000            


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  296 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpw  296 (329)
                              .                ........+..+.+||++||..+|++|||++++++|+|
T Consensus       229 --------~----------------~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         229 --------P----------------KLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             --------C----------------CCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence                    0                00001123468899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.95  E-value=1.4e-27  Score=212.30  Aligned_cols=178  Identities=26%  Similarity=0.436  Sum_probs=137.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+ .+++|+||+|+||++...                 
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~-~~i~H~dl~~~nil~~~~-----------------  137 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHD-RKILHRDIKSQNIFLSKN-----------------  137 (257)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHH-CCcccccCCHHHEEEcCC-----------------
Confidence            589999 8999999987654458899999999999999999999 499999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       138 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  163 (257)
T cd08225         138 ------------------------------------------------------GMVAKLGDFGIARQLNDSMELAYTCV  163 (257)
T ss_pred             ------------------------------------------------------CCeEEecccccchhccCCcccccccC
Confidence                                                                  235799999988654432   12335


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||.+....++.++|+||+||++|++++|..||....      .......+.  .+..                
T Consensus       164 ~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~--~~~~----------------  219 (257)
T cd08225         164 GTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN------LHQLVLKIC--QGYF----------------  219 (257)
T ss_pred             CCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHh--cccC----------------
Confidence            7888999999988889999999999999999999999996541      111111100  0000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                             .......+..+.+++++||..+|++|||+.|+++||||
T Consensus       220 -----------------------~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         220 -----------------------APISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             -----------------------CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence                                   00112335679999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.95  E-value=2.2e-27  Score=215.52  Aligned_cols=182  Identities=22%  Similarity=0.398  Sum_probs=137.4

Q ss_pred             Cccccc-chhHHHHHHhhcC--------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ |++|.+++.....        ..++...+..++.||+.||.|||++ |++||||||+||++.           
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dikp~nili~-----------  153 (288)
T cd05061          86 VVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK-KFVHRDLAARNCMVA-----------  153 (288)
T ss_pred             EEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCCChheEEEc-----------
Confidence            589999 8999999976421        1245567889999999999999995 999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  150 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-  150 (329)
                                                                                   ....++|+|||.+..... 
T Consensus       154 -------------------------------------------------------------~~~~~~L~Dfg~~~~~~~~  172 (288)
T cd05061         154 -------------------------------------------------------------HDFTVKIGDFGMTRDIYET  172 (288)
T ss_pred             -------------------------------------------------------------CCCcEEECcCCcccccccc
Confidence                                                                         245689999998854322 


Q ss_pred             ----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          151 ----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       151 ----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                          ......++..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      .......+..  +..     
T Consensus       173 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~--~~~-----  239 (288)
T cd05061         173 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS------NEQVLKFVMD--GGY-----  239 (288)
T ss_pred             ccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CCC-----
Confidence                1112234667999999998889999999999999999998 788886541      2222211110  000     


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc------CCCcCC
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ------HPWLSL  299 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~------hpwf~~  299 (329)
                                                        ...+...+..+.+++.+||+.||++|||+.++++      ||||.+
T Consensus       240 ----------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~  285 (288)
T cd05061         240 ----------------------------------LDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPE  285 (288)
T ss_pred             ----------------------------------CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCC
Confidence                                              0012233568999999999999999999999987      999998


Q ss_pred             CCC
Q 020248          300 RNS  302 (329)
Q Consensus       300 ~~~  302 (329)
                      ++|
T Consensus       286 ~~~  288 (288)
T cd05061         286 VSF  288 (288)
T ss_pred             CCC
Confidence            765

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-27  Score=212.18  Aligned_cols=179  Identities=34%  Similarity=0.480  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ |.+|.+++.... ..++...+..++.|++.||.|||+. |++|+||+|+||++.                   
T Consensus        77 l~~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~-~i~h~dl~p~ni~i~-------------------  135 (262)
T cd06613          77 IVMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHET-GKIHRDIKGANILLT-------------------  135 (262)
T ss_pred             EEEeCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CceecCCChhhEEEC-------------------
Confidence            589999 789999887652 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       136 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  162 (262)
T cd06613         136 -----------------------------------------------------EDGDVKLADFGVSAQLTATIAKRKSFI  162 (262)
T ss_pred             -----------------------------------------------------CCCCEEECccccchhhhhhhhcccccc
Confidence                                                                 245789999999865442   223346


Q ss_pred             CCCCCcchHHhhcC---CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          157 QTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       157 ~~~~y~aPE~~~~~---~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ++..|+|||.+.+.   .++.++|+||+||++|+|++|..||....      .......+. ..+..+.           
T Consensus       163 ~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~------~~~~~~~~~-~~~~~~~-----------  224 (262)
T cd06613         163 GTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH------PMRALFLIS-KSNFPPP-----------  224 (262)
T ss_pred             CCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH-hccCCCc-----------
Confidence            67889999999876   78999999999999999999999997642      111111110 0000000           


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  296 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpw  296 (329)
                                               ........+..+.+||++||..+|..|||+.+++.|+|
T Consensus       225 -------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         225 -------------------------KLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             -------------------------cccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence                                     00001122467899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.95  E-value=1.9e-27  Score=211.94  Aligned_cols=177  Identities=29%  Similarity=0.469  Sum_probs=138.9

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHH-----hhCCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLH-----RELGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH-----~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      ++|||+ |++|.+++....  ...++...+..++.||+.||.|||     +. +++|+||+|+||++..           
T Consensus        78 ~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~-~i~h~dl~p~nili~~-----------  145 (265)
T cd08217          78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN-TVLHRDLKPANIFLDA-----------  145 (265)
T ss_pred             EEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC-cceecCCCHHHEEEec-----------
Confidence            589999 889999987642  245899999999999999999999     84 9999999999999932           


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  151 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-  151 (329)
                                                                                   ...++|+|||.+...... 
T Consensus       146 -------------------------------------------------------------~~~~kl~d~g~~~~~~~~~  164 (265)
T cd08217         146 -------------------------------------------------------------NNNVKLGDFGLAKILGHDS  164 (265)
T ss_pred             -------------------------------------------------------------CCCEEEecccccccccCCc
Confidence                                                                         457999999998654432 


Q ss_pred             --cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 --~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                        .....++..|+|||.+.+..++.++|+|||||++|+|++|..||...      +.......+..  +..         
T Consensus       165 ~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~~---------  227 (265)
T cd08217         165 SFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTAR------NQLQLASKIKE--GKF---------  227 (265)
T ss_pred             ccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCc------CHHHHHHHHhc--CCC---------
Confidence              22346788999999999888999999999999999999999999764      11111111100  000         


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                    ...+...+..+.+++.+||..+|++|||+.++++|||+
T Consensus       228 ------------------------------~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         228 ------------------------------RRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             ------------------------------CCCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence                                          01222345688999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.95  E-value=9.7e-28  Score=213.91  Aligned_cols=177  Identities=29%  Similarity=0.441  Sum_probs=139.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |.+|.+++...  ..++...+..++.||+.||.|||+. |++|+||+|+||++.                   
T Consensus        77 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~lh~~-~i~h~dl~~~nil~~-------------------  134 (258)
T cd05578          77 LVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYLHSK-GIIHRDIKPDNILLD-------------------  134 (258)
T ss_pred             EEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEEc-------------------
Confidence            589999 89999999875  3589999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....+
T Consensus       135 -----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~  161 (258)
T cd05578         135 -----------------------------------------------------EQGHVHITDFNIATKVTPDTLTTSTSG  161 (258)
T ss_pred             -----------------------------------------------------CCCCEEEeecccccccCCCccccccCC
Confidence                                                                 2457899999998654432  233456


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+||+||++|+|++|..||......       ....+......                  
T Consensus       162 ~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~------------------  216 (258)
T cd05578         162 TPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT-------IRDQIRAKQET------------------  216 (258)
T ss_pred             ChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc-------HHHHHHHHhcc------------------
Confidence            77899999999888999999999999999999999999865210       11111111000                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH--HHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA--QQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta--~ell~hpwf  297 (329)
                                          .....+...+..+.++|++||+.||.+|+++  .|+++||||
T Consensus       217 --------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         217 --------------------ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             --------------------ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence                                0111233345789999999999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=6.4e-28  Score=217.96  Aligned_cols=186  Identities=26%  Similarity=0.404  Sum_probs=157.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|--.+...  +.+.++.+..++..|+.||-|||++ |||.||||.+|||+                    
T Consensus       427 FVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~k-gIiYRDLKLDNvmL--------------------  483 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVML--------------------  483 (683)
T ss_pred             eEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcC-CeeeeeccccceEe--------------------
Confidence            599999 99998877765  4489999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc---cccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR---ANKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~---~~~~~~~~~  156 (329)
                                                                          +.+.+++|+|||....   ......+.+
T Consensus       484 ----------------------------------------------------d~eGHiKi~DFGmcKEni~~~~TTkTFC  511 (683)
T KOG0696|consen  484 ----------------------------------------------------DSEGHIKIADFGMCKENIFDGVTTKTFC  511 (683)
T ss_pred             ----------------------------------------------------ccCCceEeeecccccccccCCcceeeec
Confidence                                                                5578999999999732   223456689


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++...+|+.++|.||+|+++|||+.|++||.+.      ++......|++.                    
T Consensus       512 GTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe------DE~elF~aI~eh--------------------  565 (683)
T KOG0696|consen  512 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE------DEDELFQAIMEH--------------------  565 (683)
T ss_pred             CCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHc--------------------
Confidence            999999999999999999999999999999999999999987      455555555432                    


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhhhhc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~~~~  309 (329)
                                            .-..+...+.++.+++..+|...|.+|+-     -.+|-.||||+.++|..-+.+.
T Consensus       566 ----------------------nvsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~e  621 (683)
T KOG0696|consen  566 ----------------------NVSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERRE  621 (683)
T ss_pred             ----------------------cCcCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHHhhcc
Confidence                                  22245666889999999999999999984     3578999999999998776543

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.95  E-value=1.3e-27  Score=213.23  Aligned_cols=182  Identities=34%  Similarity=0.563  Sum_probs=142.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.|+.|||+ . |++|+||+|+||++.                  
T Consensus        76 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lh~~~-~~~H~~l~~~ni~~~------------------  134 (264)
T cd06623          76 IVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYLHTKR-HIIHRDIKPSNLLIN------------------  134 (264)
T ss_pred             EEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhccC-CCccCCCCHHHEEEC------------------
Confidence            589999 79999999875  458999999999999999999998 7 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---ccC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---AEE  155 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---~~~  155 (329)
                                                                            ....++|+|||.+.......   ...
T Consensus       135 ------------------------------------------------------~~~~~~l~df~~~~~~~~~~~~~~~~  160 (264)
T cd06623         135 ------------------------------------------------------SKGEVKIADFGISKVLENTLDQCNTF  160 (264)
T ss_pred             ------------------------------------------------------CCCCEEEccCccceecccCCCcccce
Confidence                                                                  34578999999986554322   133


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .++..|+|||.+.+..++.++|+|||||++|+|++|..||.....      ......+........              
T Consensus       161 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~------~~~~~~~~~~~~~~~--------------  220 (264)
T cd06623         161 VGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ------PSFFELMQAICDGPP--------------  220 (264)
T ss_pred             eecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc------cCHHHHHHHHhcCCC--------------
Confidence            567889999999988899999999999999999999999976521      011111111111100              


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChh-hHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSET-DAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              ...+.. .+..+.++|++||..+|++|||+.|+++||||...+
T Consensus       221 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~~~  263 (264)
T cd06623         221 ------------------------PSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKKAD  263 (264)
T ss_pred             ------------------------CCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHhcc
Confidence                                    001122 467899999999999999999999999999997653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.95  E-value=2.6e-27  Score=210.51  Aligned_cols=176  Identities=30%  Similarity=0.482  Sum_probs=137.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.|++|||+. |++|+||+|+||++.                   
T Consensus        79 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~~~ni~~~-------------------  136 (258)
T cd06632          79 IFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDR-NTVHRDIKGANILVD-------------------  136 (258)
T ss_pred             EEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 889999987653  488999999999999999999994 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....+
T Consensus       137 -----------------------------------------------------~~~~~kl~d~~~~~~~~~~~~~~~~~~  163 (258)
T cd06632         137 -----------------------------------------------------TNGVVKLADFGMAKQVVEFSFAKSFKG  163 (258)
T ss_pred             -----------------------------------------------------CCCCEEEccCccceeccccccccccCC
Confidence                                                                 2457899999988544322  234457


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|++||.+.... ++.++|+||+||++|+|++|..||....      .......+... +.                 
T Consensus       164 ~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~-~~-----------------  219 (258)
T cd06632         164 SPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE------GVAAVFKIGRS-KE-----------------  219 (258)
T ss_pred             CcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc------HHHHHHHHHhc-cc-----------------
Confidence            88899999988766 8999999999999999999999996541      11111111000 00                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                            ....+...+..+.+|+++||+.+|.+|||+.+++.|||+
T Consensus       220 ----------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         220 ----------------------LPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             ----------------------CCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence                                  001223345788999999999999999999999999997

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.95  E-value=1.7e-27  Score=211.11  Aligned_cols=177  Identities=28%  Similarity=0.465  Sum_probs=139.5

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +|||++ |.+|.+++....  ...++...+..++.|++.||.|||+. |++|+||+|+||++..                
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~-~~~H~dl~~~nil~~~----------------  138 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR-KILHRDIKPQNIFLTS----------------  138 (258)
T ss_pred             EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHHeEEcC----------------
Confidence            589999 789999998753  35689999999999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                              ...++|+|||.+......   ...
T Consensus       139 --------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~  162 (258)
T cd08215         139 --------------------------------------------------------NGLVKLGDFGISKVLSSTVDLAKT  162 (258)
T ss_pred             --------------------------------------------------------CCcEEECCccceeecccCcceecc
Confidence                                                                    457899999998654432   223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..+++.|+|||.+.+..++.++|+||+|+++|+|++|..||....      .......+.+  +.               
T Consensus       163 ~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~--~~---------------  219 (258)
T cd08215         163 VVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN------LLELALKILK--GQ---------------  219 (258)
T ss_pred             eeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc------HHHHHHHHhc--CC---------------
Confidence            456788999999998889999999999999999999999996541      1111111100  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ....+...+..+.+++++||..+|++|||+.|+++||||
T Consensus       220 ------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         220 ------------------------YPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence                                    001122345688999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=2.5e-27  Score=212.04  Aligned_cols=173  Identities=21%  Similarity=0.333  Sum_probs=133.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||+|||++ |++||||||+||++..                  
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~nil~~~------------------  139 (263)
T cd05052          79 IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE------------------  139 (263)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEEcC------------------
Confidence            589999 89999999775545589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc----cC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA----EE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~----~~  155 (329)
                                                                            ...++|+|||.+........    ..
T Consensus       140 ------------------------------------------------------~~~~kl~df~~~~~~~~~~~~~~~~~  165 (263)
T cd05052         140 ------------------------------------------------------NHLVKVADFGLSRLMTGDTYTAHAGA  165 (263)
T ss_pred             ------------------------------------------------------CCcEEeCCCccccccccceeeccCCC
Confidence                                                                  45789999999865543211    11


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      .......+..   ..              
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~---~~--------------  222 (263)
T cd05052         166 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEK---GY--------------  222 (263)
T ss_pred             CCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHC---CC--------------
Confidence            23457999999998899999999999999999998 999987541      1111111110   00              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+.++.+|+.+||..||++|||+.++++
T Consensus       223 ------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         223 ------------------------RMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                                    00122334678999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.95  E-value=2.8e-27  Score=208.81  Aligned_cols=177  Identities=38%  Similarity=0.608  Sum_probs=138.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ |.+|.+++.... ..++...+..++.|++.|+.+||+ .|++||||+|+||++.                   
T Consensus        74 l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~-~~i~h~dl~p~ni~i~-------------------  132 (253)
T cd05122          74 IVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHS-NGIIHRDIKAANILLT-------------------  132 (253)
T ss_pred             EEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhc-CCEecCCCCHHHEEEc-------------------
Confidence            578999 799999988753 458999999999999999999999 5999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....+
T Consensus       133 -----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~  159 (253)
T cd05122         133 -----------------------------------------------------SDGEVKLIDFGLSAQLSDTKARNTMVG  159 (253)
T ss_pred             -----------------------------------------------------cCCeEEEeeccccccccccccccceec
Confidence                                                                 2457999999998665543  244567


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|+|||.+.+..++.++|+|||||++|+|++|..||....      ....+..+..  ...+.               
T Consensus       160 ~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~~---------------  216 (253)
T cd05122         160 TPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP------PMKALFKIAT--NGPPG---------------  216 (253)
T ss_pred             CCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc------hHHHHHHHHh--cCCCC---------------
Confidence            889999999998889999999999999999999999997541      1111111110  00000               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW  296 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpw  296 (329)
                                            .......+..+.+|+.+||+.||++|||+.|+++|||
T Consensus       217 ----------------------~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         217 ----------------------LRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             ----------------------cCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence                                  0001112567999999999999999999999999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=1.4e-27  Score=218.70  Aligned_cols=183  Identities=29%  Similarity=0.414  Sum_probs=139.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+.++|.+++.... ..++...+..++.|++.||.|||+ .|++|+||+|+||++.                    
T Consensus        92 lv~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~-~~i~H~dl~p~nIl~~--------------------  149 (307)
T cd06607          92 LVMEYCLGSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHS-HERIHRDIKAGNILLT--------------------  149 (307)
T ss_pred             EEHHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHH-CCceecCCCcccEEEC--------------------
Confidence            589999778888876543 358999999999999999999999 5999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+..... .....++..
T Consensus       150 ----------------------------------------------------~~~~~kL~dfg~~~~~~~-~~~~~~~~~  176 (307)
T cd06607         150 ----------------------------------------------------EPGTVKLADFGSASLVSP-ANSFVGTPY  176 (307)
T ss_pred             ----------------------------------------------------CCCCEEEeecCcceecCC-CCCccCCcc
Confidence                                                                345799999998854432 234567889


Q ss_pred             CcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+|||++.   ...++.++||||+||++|+|++|..||....      .......+..  +..|                
T Consensus       177 y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~------~~~~~~~~~~--~~~~----------------  232 (307)
T cd06607         177 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NDSP----------------  232 (307)
T ss_pred             ccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCcc------HHHHHHHHhc--CCCC----------------
Confidence            99999875   3468899999999999999999999997651      1111111100  0000                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                            .......+..+.+||.+||..+|++|||+.+++.||||.....+.
T Consensus       233 ----------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  277 (307)
T cd06607         233 ----------------------TLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERPPT  277 (307)
T ss_pred             ----------------------CCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhhcccCCcH
Confidence                                  000112356789999999999999999999999999999766443

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.95  E-value=2e-27  Score=214.73  Aligned_cols=174  Identities=20%  Similarity=0.364  Sum_probs=134.3

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      ++|||+ |++|.+++.....              ..++...+..++.|++.||.|||++ |++|+||||+||+++.    
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp~Nil~~~----  159 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH-HFVHRDLAARNCLVGE----  159 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccccceEEEcC----
Confidence            479999 8999999986421              3478889999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       160 --------------------------------------------------------------------~~~~~L~dfg~~  171 (283)
T cd05048         160 --------------------------------------------------------------------GLTVKISDFGLS  171 (283)
T ss_pred             --------------------------------------------------------------------CCcEEECCCcce
Confidence                                                                                457899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....+++.|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      ..+....+..  +.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~------~~~~~~~i~~--~~  243 (283)
T cd05048         172 RDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS------NQEVIEMIRS--RQ  243 (283)
T ss_pred             eeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC
Confidence            543221     223345678999999998889999999999999999997 999997652      1221111110  00


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+...+.++.+|+.+||..||.+|||+.|++++
T Consensus       244 ---------------------------------------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         244 ---------------------------------------LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             ---------------------------------------cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                                   001233456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.95  E-value=2e-27  Score=216.48  Aligned_cols=181  Identities=29%  Similarity=0.527  Sum_probs=139.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .+++..+..++.|++.||+|||+. |++||||+|+||+++                   
T Consensus        94 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~-givH~dl~p~Nilv~-------------------  150 (292)
T cd06657          94 VVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLKALSVLHAQ-GVIHRDIKSDSILLT-------------------  150 (292)
T ss_pred             EEEecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC-------------------
Confidence            589999 88999877543   488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       151 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  177 (292)
T cd06657         151 -----------------------------------------------------HDGRVKLSDFGFCAQVSKEVPRRKSLV  177 (292)
T ss_pred             -----------------------------------------------------CCCCEEEcccccceecccccccccccc
Confidence                                                                 2346899999987544321   22345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||.+.      .....+..+..   ..|..             
T Consensus       178 ~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~------~~~~~~~~~~~---~~~~~-------------  235 (292)
T cd06657         178 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE------PPLKAMKMIRD---NLPPK-------------  235 (292)
T ss_pred             cCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHh---hCCcc-------------
Confidence            678899999998888999999999999999999999999754      12222222111   00000             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                             .......+..+.+|+.+||+.+|.+||++.++++||||.....
T Consensus       236 -----------------------~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~  278 (292)
T cd06657         236 -----------------------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP  278 (292)
T ss_pred             -----------------------cCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCC
Confidence                                   0001122456789999999999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.95  E-value=3.4e-27  Score=210.66  Aligned_cols=178  Identities=34%  Similarity=0.523  Sum_probs=136.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|+||+ |++|.+++....  .++...+..++.|++.||.|||+. |++|+||+|+||++.                   
T Consensus        76 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~-~i~H~dl~~~nil~~-------------------  133 (264)
T cd06626          76 IFMEYCSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHSH-GIVHRDIKPANIFLD-------------------  133 (264)
T ss_pred             EEEecCCCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 899999998753  488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------  152 (329)
                                                                           ....++|+|||.+.......       
T Consensus       134 -----------------------------------------------------~~~~~kl~d~g~~~~~~~~~~~~~~~~  160 (264)
T cd06626         134 -----------------------------------------------------HNGVIKLGDFGCAVKLKNNTTTMGEEV  160 (264)
T ss_pred             -----------------------------------------------------CCCCEEEcccccccccCCCCCcccccc
Confidence                                                                 24578999999986554321       


Q ss_pred             ccCCCCCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          153 AEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      ....++..|+|||.+.+..   ++.++|+||+||++|++++|+.||....      ........... +..+.       
T Consensus       161 ~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~------~~~~~~~~~~~-~~~~~-------  226 (264)
T cd06626         161 QSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD------NEFQIMFHVGA-GHKPP-------  226 (264)
T ss_pred             cCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc------chHHHHHHHhc-CCCCC-------
Confidence            1235677899999998766   8899999999999999999999997541      11111111100 11000       


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                    .+.....+..+.+|+++||+.+|++|||+.|+++|||+
T Consensus       227 ------------------------------~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         227 ------------------------------IPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             ------------------------------CCcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence                                          00011225677899999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-28  Score=216.29  Aligned_cols=186  Identities=28%  Similarity=0.437  Sum_probs=157.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||. |+.|+-.+.+.  +.++++.++.+-..|++||.|||++ +|+.||+|.+|+|+                    
T Consensus       245 FVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~-~ivYRDlKLENLlL--------------------  301 (516)
T KOG0690|consen  245 FVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSR-NIVYRDLKLENLLL--------------------  301 (516)
T ss_pred             EEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhC-Ceeeeechhhhhee--------------------
Confidence            589999 99999888775  4599999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc---ccccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC---RANKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~---~~~~~~~~~~  156 (329)
                                                                          +...++||+|||+..   .........+
T Consensus       302 ----------------------------------------------------DkDGHIKitDFGLCKE~I~~g~t~kTFC  329 (516)
T KOG0690|consen  302 ----------------------------------------------------DKDGHIKITDFGLCKEEIKYGDTTKTFC  329 (516)
T ss_pred             ----------------------------------------------------ccCCceEeeecccchhcccccceecccc
Confidence                                                                556899999999973   3345667789


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |||.|+|||++....|+..+|.|.+|++.|||++|+.||....      +......                        
T Consensus       330 GTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d------h~kLFeL------------------------  379 (516)
T KOG0690|consen  330 GTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD------HEKLFEL------------------------  379 (516)
T ss_pred             CChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc------hhHHHHH------------------------
Confidence            9999999999999999999999999999999999999998762      2222222                        


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhhhc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~~~  309 (329)
                                        ++.....++...+.+++.|+..+|..||.+|+     .|.||++|+||..++|+....+.
T Consensus       380 ------------------Il~ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kk  439 (516)
T KOG0690|consen  380 ------------------ILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKK  439 (516)
T ss_pred             ------------------HHhhhccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhc
Confidence                              22333446667788999999999999999997     58999999999999998655443

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.95  E-value=4.8e-28  Score=226.05  Aligned_cols=173  Identities=29%  Similarity=0.422  Sum_probs=144.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| -+-|..+++..+  .+.......|..+|+.||+|||.+ .|||||||.-|||+..                  
T Consensus       189 IiMEfCa~GqL~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~h-KIIHRDLKSPNiLIs~------------------  247 (904)
T KOG4721|consen  189 IIMEFCAQGQLYEVLKAGR--PITPSLLVDWSKGIAGGMNYLHLH-KIIHRDLKSPNILISY------------------  247 (904)
T ss_pred             EeeeccccccHHHHHhccC--ccCHHHHHHHHHHhhhhhHHHHHh-hHhhhccCCCceEeec------------------
Confidence            689999 789999999874  488889999999999999999995 9999999999999944                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                            ...|||+|||-+.....  ....+.|
T Consensus       248 ------------------------------------------------------~d~VKIsDFGTS~e~~~~STkMSFaG  273 (904)
T KOG4721|consen  248 ------------------------------------------------------DDVVKISDFGTSKELSDKSTKMSFAG  273 (904)
T ss_pred             ------------------------------------------------------cceEEeccccchHhhhhhhhhhhhhh
Confidence                                                                  34799999999865553  4567899


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |..|||||++...+++.++|||||||+||||+||..||.....            +.-+.|.                  
T Consensus       274 TVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVds------------sAIIwGV------------------  323 (904)
T KOG4721|consen  274 TVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDS------------SAIIWGV------------------  323 (904)
T ss_pred             hHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccch------------heeEEec------------------
Confidence            9999999999999999999999999999999999999976521            0000110                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                       |..             .  -..+++..+++-|+=||++||+-.|..||++.+|+.|
T Consensus       324 -GsN-------------s--L~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~H  364 (904)
T KOG4721|consen  324 -GSN-------------S--LHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLH  364 (904)
T ss_pred             -cCC-------------c--ccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence             000             0  0234788899999999999999999999999999988

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.95  E-value=3.4e-27  Score=209.08  Aligned_cols=177  Identities=36%  Similarity=0.539  Sum_probs=140.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |++|.+++....  .++...+..++.|++.||.|||+. |++|+||+|+||++.                   
T Consensus        78 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~-~~~h~dl~p~ni~i~-------------------  135 (260)
T cd06606          78 IFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSN-GIVHRDIKGANILVD-------------------  135 (260)
T ss_pred             EEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEc-------------------
Confidence            589999 899999998764  589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                           ....++|+|||.+......     ...
T Consensus       136 -----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~  162 (260)
T cd06606         136 -----------------------------------------------------SDGVVKLADFGCAKRLGDIETGEGTGS  162 (260)
T ss_pred             -----------------------------------------------------CCCCEEEcccccEEecccccccccccC
Confidence                                                                 2457899999998655433     234


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..++..|+|||.+.+..++.++|+|||||++|+|++|..||....        .....+..+...               
T Consensus       163 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--------~~~~~~~~~~~~---------------  219 (260)
T cd06606         163 VRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG--------NPMAALYKIGSS---------------  219 (260)
T ss_pred             CCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------chHHHHHhcccc---------------
Confidence            567789999999998889999999999999999999999997652        111111111000               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                            ......+...+..+.+|+.+||..||++|||+.|+++||||
T Consensus       220 ----------------------~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         220 ----------------------GEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             ----------------------CCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence                                  00011233446789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.95  E-value=3e-27  Score=214.11  Aligned_cols=186  Identities=34%  Similarity=0.571  Sum_probs=143.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||+. |++|+||+|+||++..                  
T Consensus        92 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~-gi~H~dl~p~ni~i~~------------------  151 (286)
T cd06614          92 VVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQ-NVIHRDIKSDNILLSK------------------  151 (286)
T ss_pred             EEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCChhhEEEcC------------------
Confidence            589999 799999999864 3589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       152 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  177 (286)
T cd06614         152 ------------------------------------------------------DGSVKLADFGFAAQLTKEKSKRNSVV  177 (286)
T ss_pred             ------------------------------------------------------CCCEEECccchhhhhccchhhhcccc
Confidence                                                                  446899999987543321   12334


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .......+..  +..+.              
T Consensus       178 ~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~~--------------  235 (286)
T cd06614         178 GTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREP------PLRALFLITT--KGIPP--------------  235 (286)
T ss_pred             CCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--cCCCC--------------
Confidence            6778999999988889999999999999999999999996541      1111111110  00000              


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                                             .......+..+.+||.+||+.+|.+|||+.++++|+||+..++...
T Consensus       236 -----------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~~  281 (286)
T cd06614         236 -----------------------LKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACPKEE  281 (286)
T ss_pred             -----------------------CcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhccCchHh
Confidence                                   0001113567899999999999999999999999999999776554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.95  E-value=5e-27  Score=215.90  Aligned_cols=181  Identities=29%  Similarity=0.426  Sum_probs=138.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+.++|.+++.... ..++...+..++.||+.|+.|||+. |++|+||+|+||++.                    
T Consensus        98 lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dl~p~nili~--------------------  155 (313)
T cd06633          98 LVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILLT--------------------  155 (313)
T ss_pred             EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChhhEEEC--------------------
Confidence            589999778888876543 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+.... ......++..
T Consensus       156 ----------------------------------------------------~~~~~kL~dfg~~~~~~-~~~~~~~~~~  182 (313)
T cd06633         156 ----------------------------------------------------EPGQVKLADFGSASKSS-PANSFVGTPY  182 (313)
T ss_pred             ----------------------------------------------------CCCCEEEeecCCCcccC-CCCCcccccc
Confidence                                                                24579999999885433 2234567889


Q ss_pred             CcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+|||++.   ...++.++|+||+||++|+|++|..||....      ....+..+..  +..|.               
T Consensus       183 y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~--~~~~~---------------  239 (313)
T cd06633         183 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NDSPT---------------  239 (313)
T ss_pred             ccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHh--cCCCC---------------
Confidence            99999985   3568899999999999999999999997652      2222221110  00000               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                             ......+..+.+|+.+||+.+|++||++.++++||||.....
T Consensus       240 -----------------------~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~~  281 (313)
T cd06633         240 -----------------------LQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDRP  281 (313)
T ss_pred             -----------------------CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCch
Confidence                                   001112356889999999999999999999999999997553

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.95  E-value=3.8e-27  Score=213.70  Aligned_cols=185  Identities=30%  Similarity=0.405  Sum_probs=139.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...++.++.|++.||.|||+. |++||||+|.||++.                   
T Consensus        82 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~-~~~H~dl~p~nil~~-------------------  139 (288)
T cd05583          82 LILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLHQL-GIIYRDIKLENILLD-------------------  139 (288)
T ss_pred             EEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHeEEC-------------------
Confidence            589999 88999988764  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       140 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  166 (288)
T cd05583         140 -----------------------------------------------------SEGHVVLTDFGLSKEFLAEEEERAYSF  166 (288)
T ss_pred             -----------------------------------------------------CCCCEEEEECccccccccccccccccc
Confidence                                                                 2456899999987543321    1223


Q ss_pred             CCCCCCcchHHhhcCC--CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~--~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .++..|++||.+.+..  .+.++|+||+|+++|+|++|..||.....      ......+.+                  
T Consensus       167 ~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~------~~~~~~~~~------------------  222 (288)
T cd05583         167 CGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGE------QNSQSEISR------------------  222 (288)
T ss_pred             cCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcc------cchHHHHHH------------------
Confidence            5688999999987654  78899999999999999999999964311      000011100                  


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC---HHHHhcCCCcCCCCCCh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT---AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t---a~ell~hpwf~~~~~~~  304 (329)
                                          .........+...+..+.+||.+||+.||++|||   +.++++||||+...|..
T Consensus       223 --------------------~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~~~~~  276 (288)
T cd05583         223 --------------------RILKSKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDWDD  276 (288)
T ss_pred             --------------------HHHccCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccCCHHH
Confidence                                0000111123334567899999999999999998   56789999999987743

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.95  E-value=5.8e-27  Score=209.11  Aligned_cols=175  Identities=27%  Similarity=0.475  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ....+++..+..++.|++.||.|||+. |++|+||+|+||++..                
T Consensus        79 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~~l~~~nili~~----------------  141 (260)
T cd08222          79 IITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR-RILHRDLKAKNIFLKN----------------  141 (260)
T ss_pred             EEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc-CccccCCChhheEeec----------------
Confidence            589999 88999988753  224589999999999999999999995 9999999999999822                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                               ..++|+|||.+......   ...
T Consensus       142 ---------------------------------------------------------~~~~l~d~g~~~~~~~~~~~~~~  164 (260)
T cd08222         142 ---------------------------------------------------------NLLKIGDFGVSRLLMGSCDLATT  164 (260)
T ss_pred             ---------------------------------------------------------CCEeecccCceeecCCCcccccC
Confidence                                                                     24899999988544321   223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHh-CCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|+||+|+++|+|++|..||...      ....   .+.... +..|            
T Consensus       165 ~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~------~~~~---~~~~~~~~~~~------------  223 (260)
T cd08222         165 FTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQ------NFLS---VVLRIVEGPTP------------  223 (260)
T ss_pred             CCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCc------cHHH---HHHHHHcCCCC------------
Confidence            45677899999998888899999999999999999999999643      1111   111111 1111            


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                 ..+...+.++.++|++||+.+|++||++.|+++||||
T Consensus       224 ---------------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         224 ---------------------------SLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             ---------------------------CCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence                                       1233446788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=1.5e-27  Score=217.31  Aligned_cols=180  Identities=31%  Similarity=0.551  Sum_probs=138.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.|+.|||++ |++|+||+|+||++..                  
T Consensus        93 lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~-gi~H~dL~p~Nili~~------------------  150 (293)
T cd06647          93 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLGM------------------  150 (293)
T ss_pred             EEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CEeeccCCHHHEEEcC------------------
Confidence            589999 89999998764   378999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...++|+|||.+.....   ......
T Consensus       151 ------------------------------------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~  176 (293)
T cd06647         151 ------------------------------------------------------DGSVKLTDFGFCAQITPEQSKRSTMV  176 (293)
T ss_pred             ------------------------------------------------------CCCEEEccCcceeccccccccccccc
Confidence                                                                  34689999998744332   222345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||.+....++.++|+||+||++|++++|+.||....      ....+..+. ..+. |               
T Consensus       177 ~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~------~~~~~~~~~-~~~~-~---------------  233 (293)
T cd06647         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN------PLRALYLIA-TNGT-P---------------  233 (293)
T ss_pred             CChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------hhhheeehh-cCCC-C---------------
Confidence            7788999999988889999999999999999999999997542      111110000 0000 0               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                            ....+...+..+.+|+++||..+|++||++.+++.||||....
T Consensus       234 ----------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         234 ----------------------ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             ----------------------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCc
Confidence                                  0001122355788999999999999999999999999998765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.95  E-value=4e-27  Score=210.06  Aligned_cols=171  Identities=19%  Similarity=0.340  Sum_probs=131.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++...  ..++...+..++.|++.||+|||++ |++||||||.||++.                   
T Consensus        72 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~nill~-------------------  129 (257)
T cd05116          72 LVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYLEET-NFVHRDLAARNVLLV-------------------  129 (257)
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccchhhEEEc-------------------
Confidence            589999 78999998765  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       130 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  156 (257)
T cd05116         130 -----------------------------------------------------TQHYAKISDFGLSKALGADENYYKAKT  156 (257)
T ss_pred             -----------------------------------------------------CCCeEEECCCccccccCCCCCeeeecC
Confidence                                                                 24578999999986543221      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+....++.++|+|||||++|+|++ |..||....      .......+.+  +.             
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~i~~--~~-------------  215 (257)
T cd05116         157 HGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMK------GNEVTQMIES--GE-------------  215 (257)
T ss_pred             CCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHC--CC-------------
Confidence            2233568999999988889999999999999999997 999997652      2222222210  00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ..+.+...+..+.+||++||+.||++|||+++|..
T Consensus       216 --------------------------~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         216 --------------------------RMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             --------------------------CCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHH
Confidence                                      00122334678899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.95  E-value=3.9e-27  Score=213.83  Aligned_cols=185  Identities=25%  Similarity=0.380  Sum_probs=140.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||+. |++||||+|+||+++                   
T Consensus        82 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~i~H~dl~p~nil~~-------------------  139 (290)
T cd05613          82 LILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHLHKL-GIIYRDIKLENILLD-------------------  139 (290)
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeEEC-------------------
Confidence            589999 88999998765  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       140 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  166 (290)
T cd05613         140 -----------------------------------------------------SNGHVVLTDFGLSKEFHEDEVERAYSF  166 (290)
T ss_pred             -----------------------------------------------------CCCCEEEeeCccceecccccccccccc
Confidence                                                                 2457899999988554321    1234


Q ss_pred             CCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .++..|+|||.+...  .++.++|+||+||++|+|++|..||....      .......+.+..                
T Consensus       167 ~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~------~~~~~~~~~~~~----------------  224 (290)
T cd05613         167 CGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDG------EKNSQAEISRRI----------------  224 (290)
T ss_pred             cCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCC------ccccHHHHHHHh----------------
Confidence            578899999998753  46789999999999999999999996431      111111111100                


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                            .......+...+..+.+|+++||..||++|+     ++.++++||||...++..
T Consensus       225 ----------------------~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~~~~  278 (290)
T cd05613         225 ----------------------LKSEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWDD  278 (290)
T ss_pred             ----------------------hccCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCCHHH
Confidence                                  0001112233456889999999999999997     899999999999988633

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=3.7e-27  Score=222.21  Aligned_cols=154  Identities=23%  Similarity=0.379  Sum_probs=115.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHH
Q 020248           21 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  100 (329)
Q Consensus        21 ~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (329)
                      .++...+..++.||+.||.|||++ |++||||||+||+++.                                       
T Consensus       208 ~l~~~~~~~i~~qi~~aL~yLH~~-giiHrDLkp~Nil~~~---------------------------------------  247 (374)
T cd05106         208 PLDLDDLLRFSSQVAQGMDFLASK-NCIHRDVAARNVLLTD---------------------------------------  247 (374)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHC-CEEeccCchheEEEeC---------------------------------------
Confidence            367888999999999999999995 9999999999999932                                       


Q ss_pred             HHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----ccCCCCCCCcchHHhhcCCCCcc
Q 020248          101 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFS  175 (329)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~s~~  175 (329)
                                                       ...++|+|||.+.......     ....++..|+|||++.+..++.+
T Consensus       248 ---------------------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  294 (374)
T cd05106         248 ---------------------------------GRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQ  294 (374)
T ss_pred             ---------------------------------CCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCcc
Confidence                                             3468999999985433211     11223567999999998899999


Q ss_pred             chHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhH
Q 020248          176 VDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR  254 (329)
Q Consensus       176 ~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +|||||||++|+|++ |..||....      ....+..+... +.                                   
T Consensus       295 ~DvwSlGvil~ellt~G~~Pf~~~~------~~~~~~~~~~~-~~-----------------------------------  332 (374)
T cd05106         295 SDVWSYGILLWEIFSLGKSPYPGIL------VNSKFYKMVKR-GY-----------------------------------  332 (374)
T ss_pred             ccHHHHHHHHHHHHhCCCCCCcccc------ccHHHHHHHHc-cc-----------------------------------
Confidence            999999999999997 999997542      11111111110 00                                   


Q ss_pred             HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       255 ~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                          ....+...+.++.+++.+||+.||++|||+.++++
T Consensus       333 ----~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         333 ----QMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             ----CccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                00011223568899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=4.1e-27  Score=211.00  Aligned_cols=177  Identities=20%  Similarity=0.311  Sum_probs=128.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|..++.... ..+++..+..++.||+.||+|||++ ||+||||||+||++.....               
T Consensus        81 lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nill~~~~~---------------  143 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLEDK-DLVHGNVCTKNILLAREGI---------------  143 (262)
T ss_pred             EEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhhC-CeECCCCCcccEEEecCCc---------------
Confidence            589999 788888776533 4589999999999999999999995 9999999999999943200               


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                        .......++++|||.+...... ....++.
T Consensus       144 --------------------------------------------------~~~~~~~~~l~d~g~~~~~~~~-~~~~~~~  172 (262)
T cd05077         144 --------------------------------------------------DGECGPFIKLSDPGIPITVLSR-QECVERI  172 (262)
T ss_pred             --------------------------------------------------cCCCCceeEeCCCCCCccccCc-ccccccc
Confidence                                                              0011235899999988554332 2345678


Q ss_pred             CCcchHHhh-cCCCCccchHHHHHHHHHHHH-hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          160 QYRAPEVIL-RAGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       160 ~y~aPE~~~-~~~~s~~~DiwslG~il~~l~-~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      .|+|||.+. +..++.++|||||||++|+|+ .|..||....       ......+   ...                  
T Consensus       173 ~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-------~~~~~~~---~~~------------------  224 (262)
T cd05077         173 PWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT-------LAEKERF---YEG------------------  224 (262)
T ss_pred             cccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc-------hhHHHHH---Hhc------------------
Confidence            899999987 456899999999999999997 5888876431       0000000   000                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                           ..........++.+||.+||+.||++||++.+|+++
T Consensus       225 ---------------------~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         225 ---------------------QCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             ---------------------CccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence                                 000111124578999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.95  E-value=4.4e-27  Score=218.66  Aligned_cols=155  Identities=25%  Similarity=0.391  Sum_probs=117.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHH
Q 020248           21 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  100 (329)
Q Consensus        21 ~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (329)
                      .++...+..++.||+.||+|||++ ||+||||||+||++..                                       
T Consensus       169 ~l~~~~~~~~~~qi~~aL~~lH~~-~ivHrDikp~Nill~~---------------------------------------  208 (337)
T cd05054         169 PLTLEDLISYSFQVARGMEFLASR-KCIHRDLAARNILLSE---------------------------------------  208 (337)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEeC---------------------------------------
Confidence            578889999999999999999995 9999999999999932                                       


Q ss_pred             HHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCcc
Q 020248          101 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFS  175 (329)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~  175 (329)
                                                       ...++|+|||.+......     .....++..|+|||.+.+..++.+
T Consensus       209 ---------------------------------~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  255 (337)
T cd05054         209 ---------------------------------NNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQ  255 (337)
T ss_pred             ---------------------------------CCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCcc
Confidence                                             346899999998654321     122344668999999999999999


Q ss_pred             chHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhH
Q 020248          176 VDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR  254 (329)
Q Consensus       176 ~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +|||||||++|+|++ |..||.+..      ..+.+...... +.                                   
T Consensus       256 ~Di~SlGv~l~el~t~g~~p~~~~~------~~~~~~~~~~~-~~-----------------------------------  293 (337)
T cd05054         256 SDVWSFGVLLWEIFSLGASPYPGVQ------IDEEFCRRLKE-GT-----------------------------------  293 (337)
T ss_pred             ccHHHHHHHHHHHHHcCCCCCCCCC------ccHHHHHHHhc-cC-----------------------------------
Confidence            999999999999997 999997642      11111111000 00                                   


Q ss_pred             HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       255 ~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                          ....+......+.+++.+||+.+|++|||+.|+++|
T Consensus       294 ----~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         294 ----RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             ----CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                000122335678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=5.7e-27  Score=208.29  Aligned_cols=174  Identities=26%  Similarity=0.440  Sum_probs=137.1

Q ss_pred             Cccccc-chhHHHHHHhhc-------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR-------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      +||||+ |++|.+++....       ...+++..+..++.|++.||+|||++ |++|+||+|+||++.            
T Consensus        73 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~nili~------------  139 (262)
T cd00192          73 LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK-KFVHRDLAARNCLVG------------  139 (262)
T ss_pred             EEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC-CcccCccCcceEEEC------------
Confidence            589999 999999998752       24589999999999999999999995 999999999999993            


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  151 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-  151 (329)
                                                                                  ....++|+|||.+...... 
T Consensus       140 ------------------------------------------------------------~~~~~~l~dfg~~~~~~~~~  159 (262)
T cd00192         140 ------------------------------------------------------------EDLVVKISDFGLSRDVYDDD  159 (262)
T ss_pred             ------------------------------------------------------------CCCcEEEccccccccccccc
Confidence                                                                        3457999999998655432 


Q ss_pred             ----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh
Q 020248          152 ----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  226 (329)
Q Consensus       152 ----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  226 (329)
                          .....++..|+|||.+....++.++|+||+||++|+|++ |..||...      ........+..  +        
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~------~~~~~~~~~~~--~--------  223 (262)
T cd00192         160 YYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL------SNEEVLEYLRK--G--------  223 (262)
T ss_pred             ccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC------CHHHHHHHHHc--C--------
Confidence                233455778999999998889999999999999999998 69999765      12222222111  0        


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                     .....+...+.++.+++.+||+.+|++|||+.|++++
T Consensus       224 -------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         224 -------------------------------YRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             -------------------------------CCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                                           0011233346789999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.95  E-value=7.7e-27  Score=214.13  Aligned_cols=181  Identities=29%  Similarity=0.388  Sum_probs=138.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.|++.||.|||+. |++||||+|+||++.                    
T Consensus        92 lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nil~~--------------------  149 (308)
T cd06634          92 LVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLS--------------------  149 (308)
T ss_pred             EEEEccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHhEEEC--------------------
Confidence            589999778888776543 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+..... .....++..
T Consensus       150 ----------------------------------------------------~~~~~kl~dfg~~~~~~~-~~~~~~~~~  176 (308)
T cd06634         150 ----------------------------------------------------EPGLVKLGDFGSASIMAP-ANXFVGTPY  176 (308)
T ss_pred             ----------------------------------------------------CCCcEEECCcccceeecC-cccccCCcc
Confidence                                                                245799999998855433 234567889


Q ss_pred             CcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+|||.+.+   ..++.++|||||||++|+|++|..||....      ....+..+.+  +..|                
T Consensus       177 y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~--~~~~----------------  232 (308)
T cd06634         177 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESP----------------  232 (308)
T ss_pred             ccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc------HHHHHHHHhh--cCCC----------------
Confidence            999999863   457889999999999999999999986541      1111111110  0000                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                            .......+..+.+||.+||..+|++|||+.++++|||+.....
T Consensus       233 ----------------------~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~~~  275 (308)
T cd06634         233 ----------------------ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  275 (308)
T ss_pred             ----------------------CcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccccCC
Confidence                                  0011234567899999999999999999999999999998644

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.95  E-value=6.7e-27  Score=208.85  Aligned_cols=173  Identities=25%  Similarity=0.429  Sum_probs=133.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||+|||+. |++|+||||+||+++.                  
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~di~p~Nili~~------------------  137 (260)
T cd05070          77 IVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM-NYIHRDLRSANILVGD------------------  137 (260)
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEEeC------------------
Confidence            589999 88999999875545689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       138 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05070         138 ------------------------------------------------------GLVCKIADFGLARLIEDNEYTARQGA  163 (260)
T ss_pred             ------------------------------------------------------CceEEeCCceeeeeccCcccccccCC
Confidence                                                                  3578999999986543221    112


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|+|++ |..||...      +.......+..   ..              
T Consensus       164 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~------~~~~~~~~~~~---~~--------------  220 (260)
T cd05070         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM------NNREVLEQVER---GY--------------  220 (260)
T ss_pred             CCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC------CHHHHHHHHHc---CC--------------
Confidence            34567999999988889999999999999999999 89999754      22222222211   00              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ..+.+...+..+.+|+.+||..+|++|||++++.+
T Consensus       221 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         221 ------------------------RMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             ------------------------CCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                                    00112334568999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.94  E-value=6e-27  Score=208.44  Aligned_cols=173  Identities=20%  Similarity=0.343  Sum_probs=134.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.|+.|||+ .|++||||||+||++.                   
T Consensus        75 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~H~dl~p~nili~-------------------  134 (254)
T cd05083          75 IVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLES-KKLVHRDLAARNILVS-------------------  134 (254)
T ss_pred             EEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHh-CCeeccccCcceEEEc-------------------
Confidence            589999 8999999987654568999999999999999999999 4999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+............+.
T Consensus       135 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (254)
T cd05083         135 -----------------------------------------------------EDGVAKVSDFGLARVGSMGVDNSKLPV  161 (254)
T ss_pred             -----------------------------------------------------CCCcEEECCCccceeccccCCCCCCCc
Confidence                                                                 245789999999865443333344466


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+.+  +.                   
T Consensus       162 ~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~-------------------  214 (254)
T cd05083         162 KWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMS------LKEVKECVEK--GY-------------------  214 (254)
T ss_pred             eecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCC------HHHHHHHHhC--CC-------------------
Confidence            8999999988889999999999999999997 999997542      1111111100  00                   


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                          ....+...+..+.+|+++||..+|++|||+++++.
T Consensus       215 --------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         215 --------------------RMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             --------------------CCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                00112234578899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.94  E-value=6.6e-27  Score=211.15  Aligned_cols=172  Identities=21%  Similarity=0.335  Sum_probs=131.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++||++ +++|.+++.... ..++...+..++.|++.||+|||++ |++||||||+||++..                  
T Consensus        85 l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~iiH~dlkp~Nil~~~------------------  144 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEEV-RLVHRDLAARNVLVKS------------------  144 (279)
T ss_pred             EEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccccceEEEcC------------------
Confidence            478899 889999987643 3589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----~~  154 (329)
                                                                            ...++|+|||.+.......     ..
T Consensus       145 ------------------------------------------------------~~~~kL~dfG~~~~~~~~~~~~~~~~  170 (279)
T cd05109         145 ------------------------------------------------------PNHVKITDFGLARLLDIDETEYHADG  170 (279)
T ss_pred             ------------------------------------------------------CCcEEECCCCceeecccccceeecCC
Confidence                                                                  3468999999986554221     11


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|||||||++|+|++ |..||....      . ..+.........+             
T Consensus       171 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~-~~~~~~~~~~~~~-------------  230 (279)
T cd05109         171 GKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP------A-REIPDLLEKGERL-------------  230 (279)
T ss_pred             CccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC------H-HHHHHHHHCCCcC-------------
Confidence            223567999999998889999999999999999998 899986541      1 1111111110000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                 +.+...+..+.+++.+||..||++|||+.|++.
T Consensus       231 ---------------------------~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         231 ---------------------------PQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             ---------------------------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                       011223567899999999999999999999984

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=7.7e-27  Score=212.81  Aligned_cols=176  Identities=22%  Similarity=0.257  Sum_probs=129.2

Q ss_pred             cccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            2 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      +||+++.++.+++...  ...+...++.++.|++.||+|||++ +++||||||+||++.                     
T Consensus       105 ~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~iiHrDiKp~Nill~---------------------  160 (294)
T PHA02882        105 LLEKLVENTKEIFKRI--KCKNKKLIKNIMKDMLTTLEYIHEH-GISHGDIKPENIMVD---------------------  160 (294)
T ss_pred             EEehhccCHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc---------------------
Confidence            4566666777777654  2367888999999999999999995 999999999999993                     


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------c
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------Q  151 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------~  151 (329)
                                                                         ....++|+|||.+.....          .
T Consensus       161 ---------------------------------------------------~~~~~~l~DFGla~~~~~~~~~~~~~~~~  189 (294)
T PHA02882        161 ---------------------------------------------------GNNRGYIIDYGIASHFIIHGKHIEYSKEQ  189 (294)
T ss_pred             ---------------------------------------------------CCCcEEEEEcCCceeeccCCccccccccc
Confidence                                                               234689999999854421          1


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHH-HHHhCCCcHHHHhcCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM-MELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i-~~~~g~~p~~~~~~~~~  230 (329)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|..||.....     ....+... ....             
T Consensus       190 ~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~-----~~~~~~~~~~~~~-------------  251 (294)
T PHA02882        190 KDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGH-----NGNLIHAAKCDFI-------------  251 (294)
T ss_pred             ccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCcccc-----chHHHHHhHHHHH-------------
Confidence            1224689999999999999999999999999999999999999976521     11111100 0000             


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                            +.+..... .....+..+.+++..|++.+|++||+.+++++
T Consensus       252 ----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        252 ----------------------KRLHEGKI-KIKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             ----------------------HHhhhhhh-ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                                  00000111 11223578999999999999999999999875

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.94  E-value=8.5e-27  Score=208.75  Aligned_cols=173  Identities=25%  Similarity=0.399  Sum_probs=133.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||+|||+. |++|+||||+||++.                   
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~Nill~-------------------  136 (262)
T cd05071          77 IVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVG-------------------  136 (262)
T ss_pred             EEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcccEEEc-------------------
Confidence            589999 78999999875444588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc----cC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA----EE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~----~~  155 (329)
                                                                           ....++|+|||.+........    ..
T Consensus       137 -----------------------------------------------------~~~~~~L~dfg~~~~~~~~~~~~~~~~  163 (262)
T cd05071         137 -----------------------------------------------------ENLVCKVADFGLARLIEDNEYTARQGA  163 (262)
T ss_pred             -----------------------------------------------------CCCcEEeccCCceeeccccccccccCC
Confidence                                                                 245689999999865433211    12


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||...+..++.++|+|||||++|++++ |..||....      ....+..+..   ..              
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~------~~~~~~~~~~---~~--------------  220 (262)
T cd05071         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVER---GY--------------  220 (262)
T ss_pred             cccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------hHHHHHHHhc---CC--------------
Confidence            34567999999988889999999999999999999 888886541      2222221110   00              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+|+.+||+.||++|||++++++
T Consensus       221 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         221 ------------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             ------------------------CCCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                                    00112234568899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.94  E-value=6.8e-27  Score=208.81  Aligned_cols=173  Identities=24%  Similarity=0.416  Sum_probs=133.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||+|||+. |++|+||||+||++..                  
T Consensus        78 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~-~i~H~dl~p~nili~~------------------  138 (261)
T cd05072          78 IITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK-NYIHRDLRAANVLVSE------------------  138 (261)
T ss_pred             EEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEecC------------------
Confidence            589999 89999999876555688999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       139 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (261)
T cd05072         139 ------------------------------------------------------SLMCKIADFGLARVIEDNEYTAREGA  164 (261)
T ss_pred             ------------------------------------------------------CCcEEECCCccceecCCCceeccCCC
Confidence                                                                  456899999998654432    1222


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|+|++ |..||...      ........+..   ..              
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~------~~~~~~~~~~~---~~--------------  221 (261)
T cd05072         165 KFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM------SNSDVMSALQR---GY--------------  221 (261)
T ss_pred             ccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC------CHHHHHHHHHc---CC--------------
Confidence            34567999999988889999999999999999998 99999754      22222222211   00              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ..+.....+..+.+|+.+||..+|++|||++++++
T Consensus       222 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         222 ------------------------RMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                    00011223567899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=4.4e-27  Score=241.50  Aligned_cols=196  Identities=18%  Similarity=0.196  Sum_probs=136.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++||+++.+|.+++... ...++...++.++.||+.||+|||++ ||+||||||+|||+.....  -+..+.+....   
T Consensus        57 ~~~e~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-gIvHrDlKP~NiLl~~~~~--~k~~d~~~~~~---  129 (793)
T PLN00181         57 RALECEDVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQ-GIVVHNVRPSCFVMSSFNH--VSFIESASCSD---  129 (793)
T ss_pred             hhhccCCccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhC-CeeeccCCchhEEEcccCc--EEEeeccccCc---
Confidence            36888989999999753 24599999999999999999999995 9999999999999943210  00000000000   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                      ...+....++++|||.+.....          
T Consensus       130 ------------------------------------------------~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~  161 (793)
T PLN00181        130 ------------------------------------------------SGSDEDATTKSREIGSSRREEILSERRIEKLE  161 (793)
T ss_pred             ------------------------------------------------ccccccCcccccccccccccccccccchhhhh
Confidence                                                            0001234689999998854211          


Q ss_pred             ---------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          151 ---------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       151 ---------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                               ......+|+.|+|||++.+..|+.++|||||||++|||++|..|+...        ...+..+..  +.+|
T Consensus       162 ~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~--------~~~~~~~~~--~~~~  231 (793)
T PLN00181        162 EVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK--------SRTMSSLRH--RVLP  231 (793)
T ss_pred             ccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH--------HHHHHHHHH--hhcC
Confidence                     011135788899999999999999999999999999999988876432        111111110  0011


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      +..                                       ........+++.+||+.+|.+|||+.|+++||||...
T Consensus       232 ~~~---------------------------------------~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        232 PQI---------------------------------------LLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             hhh---------------------------------------hhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            000                                       0012245688899999999999999999999999864

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=5.6e-27  Score=208.62  Aligned_cols=173  Identities=24%  Similarity=0.407  Sum_probs=134.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+. |++|+||||+||++.                   
T Consensus        75 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dl~p~nili~-------------------  134 (255)
T cd08219          75 IVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK-RVLHRDIKSKNIFLT-------------------  134 (255)
T ss_pred             EEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEEC-------------------
Confidence            589999 88999988765555689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++++|||.+......   .....
T Consensus       135 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  161 (255)
T cd08219         135 -----------------------------------------------------QNGKVKLGDFGSARLLTSPGAYACTYV  161 (255)
T ss_pred             -----------------------------------------------------CCCcEEEcccCcceeeccccccccccc
Confidence                                                                 2457899999998554332   22346


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||++.+..++.++|+||+||++|+|++|..||....      .......+.  .+..                
T Consensus       162 ~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~------~~~~~~~~~--~~~~----------------  217 (255)
T cd08219         162 GTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS------WKNLILKVC--QGSY----------------  217 (255)
T ss_pred             CCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC------HHHHHHHHh--cCCC----------------
Confidence            7888999999988889999999999999999999999997541      111111110  0000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             ...+...+..+.+|+++||..||++|||+.|+++
T Consensus       218 -----------------------~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  251 (255)
T cd08219         218 -----------------------KPLPSHYSYELRSLIKQMFKRNPRSRPSATTILS  251 (255)
T ss_pred             -----------------------CCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhh
Confidence                                   0012223557899999999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.94  E-value=1.1e-26  Score=207.56  Aligned_cols=173  Identities=26%  Similarity=0.408  Sum_probs=133.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+. |++|+||||+||+++                   
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dl~~~Nill~-------------------  136 (260)
T cd05069          77 IVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM-NYIHRDLRAANILVG-------------------  136 (260)
T ss_pred             EEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccCcceEEEc-------------------
Confidence            589999 78999999875545588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                           ....++|+|||.+.......    ...
T Consensus       137 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05069         137 -----------------------------------------------------DNLVCKIADFGLARLIEDNEYTARQGA  163 (260)
T ss_pred             -----------------------------------------------------CCCeEEECCCccceEccCCcccccCCC
Confidence                                                                 24578999999985543211    122


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||...+..++.++|+|||||++|+|++ |..||.+.      .+......+..   ..              
T Consensus       164 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~------~~~~~~~~~~~---~~--------------  220 (260)
T cd05069         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM------VNREVLEQVER---GY--------------  220 (260)
T ss_pred             ccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc---CC--------------
Confidence            34567999999988889999999999999999999 89999764      22222222111   00              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+|+.+||..||++|||++++++
T Consensus       221 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         221 ------------------------RMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             ------------------------CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                    00112234578999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.94  E-value=9.1e-27  Score=207.84  Aligned_cols=173  Identities=23%  Similarity=0.427  Sum_probs=135.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||++ |++|+||+|+||+++.                  
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~h~dl~~~nilv~~------------------  139 (261)
T cd05148          79 IITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ-NSIHRDLAARNILVGE------------------  139 (261)
T ss_pred             EEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccCcceEEEcC------------------
Confidence            589999 88999999876555689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---ccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---AEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~  156 (329)
                                                                            ...++|+|||.+.......   ....
T Consensus       140 ------------------------------------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~  165 (261)
T cd05148         140 ------------------------------------------------------DLVCKVADFGLARLIKEDVYLSSDKK  165 (261)
T ss_pred             ------------------------------------------------------CceEEEccccchhhcCCccccccCCC
Confidence                                                                  4578999999986544321   1223


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      ....+..+..  +                 
T Consensus       166 ~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~--~-----------------  220 (261)
T cd05148         166 IPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN------NHEVYDQITA--G-----------------  220 (261)
T ss_pred             CceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHHh--C-----------------
Confidence            4567999999998889999999999999999998 899997652      2222222211  0                 


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                            ...+.+..++..+.+++.+||+.||++|||++++++
T Consensus       221 ----------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         221 ----------------------YRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             ----------------------CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                  001123344678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.94  E-value=5.3e-27  Score=211.69  Aligned_cols=180  Identities=32%  Similarity=0.485  Sum_probs=139.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.|+.|||++ |++|+||+|+||++..                  
T Consensus        79 lv~e~~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~dl~p~Ni~i~~------------------  136 (277)
T cd06641          79 IIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLSE------------------  136 (277)
T ss_pred             EEEEeCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccC-CeecCCCCHHhEEECC------------------
Confidence            589999 88999988753   489999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       137 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  162 (277)
T cd06641         137 ------------------------------------------------------HGEVKLADFGVAGQLTDTQIKRNTFV  162 (277)
T ss_pred             ------------------------------------------------------CCCEEEeecccceecccchhhhcccc
Confidence                                                                  456899999988544321   12235


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+||++|+|++|..||....      .......+..  +.                 
T Consensus       163 ~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~--~~-----------------  217 (277)
T cd06641         163 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH------PMKVLFLIPK--NN-----------------  217 (277)
T ss_pred             CCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc------hHHHHHHHhc--CC-----------------
Confidence            6778999999988888999999999999999999999996541      1111111100  00                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            ........+..+.+++.+||+.+|++||++.++++||||.....+
T Consensus       218 ----------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~~~~  262 (277)
T cd06641         218 ----------------------PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFAKK  262 (277)
T ss_pred             ----------------------CCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhhhhc
Confidence                                  001122345678999999999999999999999999999986543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.94  E-value=1.3e-26  Score=209.43  Aligned_cols=172  Identities=23%  Similarity=0.357  Sum_probs=131.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.||+.||.|||++ |++|+||||+||++.                   
T Consensus        85 ~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~nili~-------------------  143 (279)
T cd05111          85 LVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEH-RMVHRNLAARNILLK-------------------  143 (279)
T ss_pred             EEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEEc-------------------
Confidence            478998 899999997643 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                           ....++|+|||.+.....     ....
T Consensus       144 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  170 (279)
T cd05111         144 -----------------------------------------------------SDSIVQIADFGVADLLYPDDKKYFYSE  170 (279)
T ss_pred             -----------------------------------------------------CCCcEEEcCCccceeccCCCcccccCC
Confidence                                                                 245789999999854421     1122


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|||||||++|++++ |..||.+..       ...+..+.+....+             
T Consensus       171 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~-------------  230 (279)
T cd05111         171 HKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR-------PHEVPDLLEKGERL-------------  230 (279)
T ss_pred             CCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHCCCcC-------------
Confidence            345678999999998889999999999999999998 999997641       12222221100000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                 ..+..++..+.+++.+||..||++|||+.|+++
T Consensus       231 ---------------------------~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         231 ---------------------------AQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             ---------------------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                       011223456788999999999999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.94  E-value=7.8e-27  Score=209.43  Aligned_cols=172  Identities=18%  Similarity=0.314  Sum_probs=131.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..++...+..++.||+.||+|||+. |++||||||+||++.                   
T Consensus        83 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~-~iiH~dikp~nili~-------------------  141 (266)
T cd05064          83 IVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEM-GYVHKGLAAHKVLVN-------------------  141 (266)
T ss_pred             EEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeeccccHhhEEEc-------------------
Confidence            689999 789999987643 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++++|||.+......    ....
T Consensus       142 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  168 (266)
T cd05064         142 -----------------------------------------------------SDLVCKISGFRRLQEDKSEAIYTTMSG  168 (266)
T ss_pred             -----------------------------------------------------CCCcEEECCCcccccccccchhcccCC
Confidence                                                                 2446899999976433211    1122


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++||||+||++|++++ |..||....      ....+..+.+.  .               
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~------~~~~~~~~~~~--~---------------  225 (266)
T cd05064         169 KSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS------GQDVIKAVEDG--F---------------  225 (266)
T ss_pred             CCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHCC--C---------------
Confidence            34568999999999999999999999999999765 999997652      22222222110  0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ..+.+...+..+.+++.+||..+|++|||+.+|++
T Consensus       226 ------------------------~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         226 ------------------------RLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence                                    00112334668899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=8.2e-27  Score=212.02  Aligned_cols=173  Identities=20%  Similarity=0.366  Sum_probs=132.5

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++.....              ..+++..+..++.||+.|++|||++ |++||||||+||++.     
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp~Nil~~-----  157 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ-HFVHRDLATRNCLVG-----  157 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCcceEEEc-----
Confidence            589999 8999999976421              2378899999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       158 -------------------------------------------------------------------~~~~~~l~dfg~a  170 (291)
T cd05094         158 -------------------------------------------------------------------ANLLVKIGDFGMS  170 (291)
T ss_pred             -------------------------------------------------------------------cCCcEEECCCCcc
Confidence                                                                               2457999999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      ....+..+.  .+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~--~~~  242 (291)
T cd05094         171 RDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS------NTEVIECIT--QGR  242 (291)
T ss_pred             cccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHh--CCC
Confidence            544321     122345678999999999899999999999999999998 999986542      222111110  000


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      .+                                       ..+...+..+.+|+.+||+.||++|||+.++++
T Consensus       243 ~~---------------------------------------~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         243 VL---------------------------------------ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             CC---------------------------------------CCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence            00                                       011223567899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=9.3e-27  Score=209.90  Aligned_cols=173  Identities=22%  Similarity=0.382  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhhc------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK   67 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~   67 (329)
                      +||||+ |++|.+++....            ...+++..+..++.|++.|+.|||++ |++||||||+||+++       
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~h~dlkp~nili~-------  156 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ-HFVHRDLATRNCLVG-------  156 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-CeeccccccceEEEc-------
Confidence            589999 899999997642            13478889999999999999999995 999999999999993       


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc
Q 020248           68 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  147 (329)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~  147 (329)
                                                                                       ....++|+|||.+..
T Consensus       157 -----------------------------------------------------------------~~~~~kl~d~g~~~~  171 (280)
T cd05049         157 -----------------------------------------------------------------YDLVVKIGDFGMSRD  171 (280)
T ss_pred             -----------------------------------------------------------------CCCeEEECCccccee
Confidence                                                                             345799999998854


Q ss_pred             cccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          148 ANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       148 ~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                      ....     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+.  .|..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~------~~~~~~~~~--~~~~~  243 (280)
T cd05049         172 VYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS------NEEVIECIT--QGRLL  243 (280)
T ss_pred             cccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHH--cCCcC
Confidence            3211     122234668999999999999999999999999999998 999997652      222222211  00000


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                             ..+...+..+.+|+++||..||++|||+.|+++
T Consensus       244 ---------------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         244 ---------------------------------------QRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             ---------------------------------------CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                                                   011233568899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.94  E-value=1.5e-26  Score=213.03  Aligned_cols=181  Identities=30%  Similarity=0.397  Sum_probs=138.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+.++|.+++.... ..++...+..++.|++.||.|||+. |++|+||+|+||++.                    
T Consensus       102 lv~e~~~g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~-~i~H~dL~p~Nil~~--------------------  159 (317)
T cd06635         102 LVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSH-NMIHRDIKAGNILLT--------------------  159 (317)
T ss_pred             EEEeCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcccEEEC--------------------
Confidence            589999668888776543 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+..... .....++..
T Consensus       160 ----------------------------------------------------~~~~~kl~dfg~~~~~~~-~~~~~~~~~  186 (317)
T cd06635         160 ----------------------------------------------------EPGQVKLADFGSASIASP-ANSFVGTPY  186 (317)
T ss_pred             ----------------------------------------------------CCCCEEEecCCCccccCC-cccccCCcc
Confidence                                                                245789999998754332 234467889


Q ss_pred             CcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+|||.+.   +..++.++|+||+||++|+|++|..||...      +....+..+.....+                  
T Consensus       187 y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~------~~~~~~~~~~~~~~~------------------  242 (317)
T cd06635         187 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM------NAMSALYHIAQNESP------------------  242 (317)
T ss_pred             ccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHhccCC------------------
Confidence            99999985   346889999999999999999999998654      122222222110000                  


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                            .......+..+.+|+.+||+.+|++|||+.++++|+|+.....
T Consensus       243 ----------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~  285 (317)
T cd06635         243 ----------------------TLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERP  285 (317)
T ss_pred             ----------------------CCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccCc
Confidence                                  0011123567899999999999999999999999999976544

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.94  E-value=9.5e-27  Score=212.31  Aligned_cols=174  Identities=20%  Similarity=0.313  Sum_probs=131.1

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++.....              ..++...+..++.|++.||+|||++ |++||||||+||+++     
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nill~-----  153 (297)
T cd05089          80 IAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK-QFIHRDLAARNVLVG-----  153 (297)
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCcCCcceEEEC-----
Confidence            579999 8899999976421              2478889999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       154 -------------------------------------------------------------------~~~~~kl~dfg~~  166 (297)
T cd05089         154 -------------------------------------------------------------------ENLASKIADFGLS  166 (297)
T ss_pred             -------------------------------------------------------------------CCCeEEECCcCCC
Confidence                                                                               2346899999998


Q ss_pred             cccccccc--cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          146 CRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       146 ~~~~~~~~--~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ........  ....+..|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+..   ..  
T Consensus       167 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~------~~~~~~~~~~---~~--  235 (297)
T cd05089         167 RGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ---GY--  235 (297)
T ss_pred             ccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHhc---CC--
Confidence            54332111  1223457999999998889999999999999999997 999997652      1111111100   00  


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                          ....+...+..+.+|+.+||..+|.+|||++++++.
T Consensus       236 ------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         236 ------------------------------------RMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             ------------------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                001122345688999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.94  E-value=9e-27  Score=214.37  Aligned_cols=173  Identities=20%  Similarity=0.341  Sum_probs=132.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|+||+ +++|.+++.... ..++...+..++.||+.||+|||++ ||+||||||+||++..                  
T Consensus        85 ~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~iiH~dlkp~Nill~~------------------  144 (316)
T cd05108          85 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEER-RLVHRDLAARNVLVKT------------------  144 (316)
T ss_pred             eeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhc-CeeccccchhheEecC------------------
Confidence            578998 899999988753 3488889999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----~~  154 (329)
                                                                            ...++|+|||.+.......     ..
T Consensus       145 ------------------------------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~  170 (316)
T cd05108         145 ------------------------------------------------------PQHVKITDFGLAKLLGADEKEYHAEG  170 (316)
T ss_pred             ------------------------------------------------------CCcEEEccccccccccCCCcceeccC
Confidence                                                                  4568999999996544211     11


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..       ...+..+......+             
T Consensus       171 ~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~-------------  230 (316)
T cd05108         171 GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-------ASEISSILEKGERL-------------  230 (316)
T ss_pred             CccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHhCCCCC-------------
Confidence            223567999999999999999999999999999987 999997541       11112211100000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                 +.+..++..+.+++.+||..+|++|||+.+++.+
T Consensus       231 ---------------------------~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         231 ---------------------------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             ---------------------------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                       0122234578899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=9.8e-27  Score=211.20  Aligned_cols=173  Identities=20%  Similarity=0.355  Sum_probs=131.9

Q ss_pred             Cccccc-chhHHHHHHhhcC-----------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD   68 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~   68 (329)
                      +||||+ |++|.+++.....           ..+++..+..++.|++.||+|||++ |++||||||+||++.        
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~-~i~H~dlkp~Nili~--------  154 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATRNCLVG--------  154 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccCcceEEEc--------
Confidence            589999 8999999875421           2389999999999999999999995 999999999999993        


Q ss_pred             CCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc
Q 020248           69 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  148 (329)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~  148 (329)
                                                                                      ....++|+|||.+...
T Consensus       155 ----------------------------------------------------------------~~~~~kl~dfg~~~~~  170 (288)
T cd05093         155 ----------------------------------------------------------------ENLLVKIGDFGMSRDV  170 (288)
T ss_pred             ----------------------------------------------------------------cCCcEEeccCCccccc
Confidence                                                                            2457899999998544


Q ss_pred             ccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          149 NKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       149 ~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ...     .....++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      ....+..+..  |..  
T Consensus       171 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~------~~~~~~~i~~--~~~--  240 (288)
T cd05093         171 YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIECITQ--GRV--  240 (288)
T ss_pred             cCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CCc--
Confidence            321     122234668999999998889999999999999999998 999987552      2222222210  100  


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                           ...+...+..+.+|+.+||+.||.+|||+.|+++
T Consensus       241 -------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         241 -------------------------------------LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             -------------------------------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                                                 0012223567999999999999999999999854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.94  E-value=1.7e-26  Score=205.63  Aligned_cols=174  Identities=25%  Similarity=0.353  Sum_probs=134.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+.+.......+++..+..++.|++.||+|||++ |++|+||+|+||++..                  
T Consensus        72 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~di~p~nil~~~------------------  132 (257)
T cd05040          72 MVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK-RFIHRDLAARNILLAS------------------  132 (257)
T ss_pred             EEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC-CccccccCcccEEEec------------------
Confidence            589999 89999998875434589999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       133 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  158 (257)
T cd05040         133 ------------------------------------------------------DDKVKIGDFGLMRALPQNEDHYVMEE  158 (257)
T ss_pred             ------------------------------------------------------CCEEEeccccccccccccccceeccc
Confidence                                                                  457999999988554321      11


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++ |..||...      ...+....+.. .+.             
T Consensus       159 ~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~------~~~~~~~~~~~-~~~-------------  218 (257)
T cd05040         159 HLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGL------SGSQILKKIDK-EGE-------------  218 (257)
T ss_pred             CCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHh-cCC-------------
Confidence            2345678999999998889999999999999999998 99999654      12222222211 000             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+++.+||..+|++|||+.|+++
T Consensus       219 --------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         219 --------------------------RLERPEACPQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             --------------------------cCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence                                      00012234568999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.94  E-value=1.1e-26  Score=209.55  Aligned_cols=174  Identities=21%  Similarity=0.374  Sum_probs=131.1

Q ss_pred             Cccccc-chhHHHHHHhhcC--------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ |++|.+++.....        ..++...+..++.|++.||.|||+. |++|+||||+||+++           
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~~vH~dlkp~Nil~~-----------  153 (277)
T cd05062          86 VIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMVA-----------  153 (277)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCcchheEEEc-----------
Confidence            589999 8999999875321        2356778899999999999999995 999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  151 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~  151 (329)
                                                                                   ....++|+|||.+......
T Consensus       154 -------------------------------------------------------------~~~~~~l~dfg~~~~~~~~  172 (277)
T cd05062         154 -------------------------------------------------------------EDFTVKIGDFGMTRDIYET  172 (277)
T ss_pred             -------------------------------------------------------------CCCCEEECCCCCccccCCc
Confidence                                                                         2457899999988543221


Q ss_pred             -----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          152 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       152 -----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                           .....++..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      ....+..+.. .+.      
T Consensus       173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~------~~~~~~~~~~-~~~------  239 (277)
T cd05062         173 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS------NEQVLRFVME-GGL------  239 (277)
T ss_pred             ceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc-CCc------
Confidence                 112244678999999998889999999999999999998 788886542      2222221110 000      


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                        ...+...+..+.+|+.+||+.||++|||+.|++++
T Consensus       240 ----------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         240 ----------------------------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             ----------------------------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                              01123345689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.94  E-value=1.4e-26  Score=218.42  Aligned_cols=155  Identities=26%  Similarity=0.419  Sum_probs=115.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHH
Q 020248           21 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  100 (329)
Q Consensus        21 ~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (329)
                      .++...+..++.||+.||.|||++ |++||||||+||+++.                                       
T Consensus       210 ~l~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nill~~---------------------------------------  249 (375)
T cd05104         210 ALDTEDLLSFSYQVAKGMSFLASK-NCIHRDLAARNILLTH---------------------------------------  249 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCchhhEEEEC---------------------------------------
Confidence            367788999999999999999995 9999999999999932                                       


Q ss_pred             HHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----ccCCCCCCCcchHHhhcCCCCcc
Q 020248          101 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AEEIQTRQYRAPEVILRAGYSFS  175 (329)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~s~~  175 (329)
                                                       ...++|+|||.+.......     ....++..|+|||.+.+..++.+
T Consensus       250 ---------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  296 (375)
T cd05104         250 ---------------------------------GRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFE  296 (375)
T ss_pred             ---------------------------------CCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCC
Confidence                                             3468999999986543211     11233567999999999999999


Q ss_pred             chHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhH
Q 020248          176 VDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR  254 (329)
Q Consensus       176 ~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +|||||||++|+|++ |..||....     ........+..  +         .                          
T Consensus       297 sDi~slG~~l~ellt~g~~p~~~~~-----~~~~~~~~~~~--~---------~--------------------------  334 (375)
T cd05104         297 SDVWSYGILLWEIFSLGSSPYPGMP-----VDSKFYKMIKE--G---------Y--------------------------  334 (375)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCCCC-----chHHHHHHHHh--C---------c--------------------------
Confidence            999999999999997 888887542     11111111100  0         0                          


Q ss_pred             HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       255 ~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                          ....+...+.++.+|+.+||..||++|||+.|+++.
T Consensus       335 ----~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         335 ----RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             ----cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                000112235678999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.2e-26  Score=206.67  Aligned_cols=173  Identities=24%  Similarity=0.388  Sum_probs=135.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.......++...+..++.|++.||.|||++ |++|+||||+||+++                   
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~Nili~-------------------  136 (256)
T cd05039          77 IVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK-NFVHRDLAARNVLVS-------------------  136 (256)
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccchhcccceEEEe-------------------
Confidence            589999 78999999876544689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+............+.
T Consensus       137 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  163 (256)
T cd05039         137 -----------------------------------------------------EDLVAKVSDFGLAKEASQGQDSGKLPV  163 (256)
T ss_pred             -----------------------------------------------------CCCCEEEcccccccccccccccCCCcc
Confidence                                                                 245789999999876654444444566


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.    .       .+          
T Consensus       164 ~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~----~-------~~----------  216 (256)
T cd05039         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPHVE----K-------GY----------  216 (256)
T ss_pred             cccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHh----c-------CC----------
Confidence            8999999988889999999999999999997 999986541      111111110    0       00          


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                          ....+...+..+.+||++||..+|++|||+.|+++
T Consensus       217 --------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         217 --------------------RMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             --------------------CCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                                00012233578899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.94  E-value=4.2e-27  Score=200.15  Aligned_cols=177  Identities=28%  Similarity=0.398  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhhcCC--CcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYK--GLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~--~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      |+++|. .++|.+.+.....+  .+++.++..|+.+|+.||.+||+. .  ++||||||.|||++               
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls---------------  163 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLS---------------  163 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEec---------------
Confidence            467787 78899988875433  499999999999999999999994 8  99999999999993               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----  150 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----  150 (329)
                                                                               ....++++|||.+.....     
T Consensus       164 ---------------------------------------------------------~~~~~vl~D~GS~~~a~i~i~~~  186 (302)
T KOG2345|consen  164 ---------------------------------------------------------DSGLPVLMDLGSATQAPIQIEGS  186 (302)
T ss_pred             ---------------------------------------------------------CCCceEEEeccCccccceEeech
Confidence                                                                     345789999999865542     


Q ss_pred             -------ccccCCCCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 020248          151 -------QFAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM  220 (329)
Q Consensus       151 -------~~~~~~~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~  220 (329)
                             ..+....|..|+|||.+.   ++..+.+.|||||||++|.|+.|..||.....++.               .+
T Consensus       187 ~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~Gg---------------Sl  251 (302)
T KOG2345|consen  187 RQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGG---------------SL  251 (302)
T ss_pred             HHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCC---------------eE
Confidence                   122335588999999986   34578999999999999999999999975421111               10


Q ss_pred             cHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          221 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                  .+.-..++....                 -....++.+..|+..||+.||.+||++.|++.+
T Consensus       252 ------------aLAv~n~q~s~P-----------------~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  252 ------------ALAVQNAQISIP-----------------NSSRYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             ------------EEeeeccccccC-----------------CCCCccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence                        011111111110                 011246789999999999999999999999864

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=1e-26  Score=206.96  Aligned_cols=176  Identities=23%  Similarity=0.360  Sum_probs=130.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ |++|+||||+||+++...+.              
T Consensus        77 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dlkp~Nill~~~~~~--------------  140 (259)
T cd05037          77 MVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDK-KLVHGNVCGKNILVARYGLN--------------  140 (259)
T ss_pred             EEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhC-CeecccCccceEEEecCccc--------------
Confidence            589999 899999998764 2589999999999999999999995 99999999999999543100              


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                         +.....++|+|||.+..... .....++.
T Consensus       141 ---------------------------------------------------~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~  168 (259)
T cd05037         141 ---------------------------------------------------EGYVPFIKLSDPGIPITVLS-REERVERI  168 (259)
T ss_pred             ---------------------------------------------------cCCceeEEeCCCCccccccc-ccccccCC
Confidence                                                               01234689999999865443 22345567


Q ss_pred             CCcchHHhhcC--CCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          160 QYRAPEVILRA--GYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       160 ~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      .|+|||.+.+.  .++.++|+|||||++|+|++ |..||....      ...... ..                      
T Consensus       169 ~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~------~~~~~~-~~----------------------  219 (259)
T cd05037         169 PWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS------SSEKER-FY----------------------  219 (259)
T ss_pred             CccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC------chhHHH-HH----------------------
Confidence            89999999877  78999999999999999998 577775431      000000 00                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                          ......+......+.+||.+||..+|++|||+.|+++
T Consensus       220 --------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         220 --------------------QDQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             --------------------hcCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence                                0000011111268899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.94  E-value=7.6e-27  Score=212.11  Aligned_cols=174  Identities=22%  Similarity=0.380  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhh--------------cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYS--------------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--------------~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++...              ....++...+..++.|++.||+|||++ |++||||||+||++.     
T Consensus        93 li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~dlkp~Nil~~-----  166 (293)
T cd05053          93 VVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK-KCIHRDLAARNVLVT-----  166 (293)
T ss_pred             EEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC-CccccccceeeEEEc-----
Confidence            589999 88999998752              124588999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       167 -------------------------------------------------------------------~~~~~kL~Dfg~~  179 (293)
T cd05053         167 -------------------------------------------------------------------EDHVMKIADFGLA  179 (293)
T ss_pred             -------------------------------------------------------------------CCCeEEeCccccc
Confidence                                                                               2457899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||.+.+..++.++|||||||++|++++ |..||....      .......+..  +.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~  251 (293)
T cd05053         180 RDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLKE--GY  251 (293)
T ss_pred             cccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC------HHHHHHHHHc--CC
Confidence            654321     112234567999999988889999999999999999987 999987642      1111111100  00


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+...+..+.+|+.+||..||++|||+.|++++
T Consensus       252 ---------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         252 ---------------------------------------RMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             ---------------------------------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence                                                   001123345688999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.94  E-value=1.5e-26  Score=211.52  Aligned_cols=180  Identities=18%  Similarity=0.294  Sum_probs=130.4

Q ss_pred             Cccccc-chhHHHHHHhhcC-----------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST   62 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~   62 (329)
                      +||||+ |++|.+++.....                 ..++...+..++.||+.||.|||+. |++||||||+||+++  
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~ivH~dlkp~Nill~--  172 (304)
T cd05096          96 MITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL-NFVHRDLATRNCLVG--  172 (304)
T ss_pred             EEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC-CccccCcchhheEEc--
Confidence            589999 8999999875321                 1367778999999999999999995 999999999999993  


Q ss_pred             CCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeec
Q 020248           63 IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDF  142 (329)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Df  142 (329)
                                                                                            ....++|+||
T Consensus       173 ----------------------------------------------------------------------~~~~~kl~Df  182 (304)
T cd05096         173 ----------------------------------------------------------------------ENLTIKIADF  182 (304)
T ss_pred             ----------------------------------------------------------------------CCccEEECCC
Confidence                                                                                  2457999999


Q ss_pred             Ccccccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh--CCcCCCCCCCCCCCCchHHHHHHHH
Q 020248          143 GNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMME  215 (329)
Q Consensus       143 g~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~--g~~pf~~~~~~~~~~~~~~l~~i~~  215 (329)
                      |.+......     .....++..|+|||++.+..++.++|||||||++|+|++  +..||...      .....+..+..
T Consensus       183 G~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~------~~~~~~~~~~~  256 (304)
T cd05096         183 GMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGEL------TDEQVIENAGE  256 (304)
T ss_pred             ccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcC------CHHHHHHHHHH
Confidence            998544321     112344678999999998889999999999999999986  55677654      22222222221


Q ss_pred             HhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          216 LIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       216 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      .+......                                  .....+..++..+.+||.+||..||++|||+.||.+
T Consensus       257 ~~~~~~~~----------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~  300 (304)
T cd05096         257 FFRDQGRQ----------------------------------VYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHA  300 (304)
T ss_pred             Hhhhcccc----------------------------------ccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHH
Confidence            11000000                                  000012234678999999999999999999999953

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.94  E-value=1.1e-26  Score=208.68  Aligned_cols=174  Identities=22%  Similarity=0.353  Sum_probs=130.9

Q ss_pred             Cccccc-chhHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~----~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      +||||+ +++|.+++....    ...++...+..++.|++.||+|||++ ||+||||||+||+++               
T Consensus        83 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~---------------  146 (272)
T cd05075          83 VILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK-SFIHRDLAARNCMLN---------------  146 (272)
T ss_pred             EEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhheEEc---------------
Confidence            478999 889998875432    13478999999999999999999995 999999999999993               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  152 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---  152 (329)
                                                                               ....++|+|||.+.......   
T Consensus       147 ---------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~  169 (272)
T cd05075         147 ---------------------------------------------------------ENMNVCVADFGLSKKIYNGDYYR  169 (272)
T ss_pred             ---------------------------------------------------------CCCCEEECCCCcccccCccccee
Confidence                                                                     24568999999986543211   


Q ss_pred             --ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          153 --AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       153 --~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                        ....++..|++||...+..++.++|+|||||++|+|++ |..||.+..      .......+..  |.          
T Consensus       170 ~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~----------  231 (272)
T cd05075         170 QGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE------NSEIYDYLRQ--GN----------  231 (272)
T ss_pred             cCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC----------
Confidence              12234668999999998889999999999999999998 888886541      2111111110  00          


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                   ....+...+..+.++|.+||..||++|||+.|++++
T Consensus       232 -----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         232 -----------------------------RLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             -----------------------------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                         000122345678999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=1.1e-26  Score=207.50  Aligned_cols=178  Identities=22%  Similarity=0.358  Sum_probs=130.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..+++..+..++.||+.||+|||++ |++||||||+||+++......             
T Consensus        76 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~iiH~dlkp~nili~~~~~~~-------------  140 (258)
T cd05078          76 MVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDK-GLTHGNVCAKNVLLIREEDRK-------------  140 (258)
T ss_pred             EEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCccceEEEecccccc-------------
Confidence            589999 889999987653 3588999999999999999999995 999999999999995421000             


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                         ......++++|||.+..... .....++.
T Consensus       141 ---------------------------------------------------~~~~~~~~l~d~g~~~~~~~-~~~~~~~~  168 (258)
T cd05078         141 ---------------------------------------------------TGNPPFIKLSDPGISITVLP-KEILLERI  168 (258)
T ss_pred             ---------------------------------------------------cCCCceEEecccccccccCC-chhccccC
Confidence                                                               01134589999999854432 22345778


Q ss_pred             CCcchHHhhcC-CCCccchHHHHHHHHHHHHhCC-cCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          160 QYRAPEVILRA-GYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       160 ~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      .|+|||++.+. .++.++|+|||||++|+|++|. .||....      ...... ..                       
T Consensus       169 ~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~------~~~~~~-~~-----------------------  218 (258)
T cd05078         169 PWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALD------SQKKLQ-FY-----------------------  218 (258)
T ss_pred             CccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhcc------HHHHHH-HH-----------------------
Confidence            89999999874 5899999999999999999985 5554321      111100 00                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                         ......+.....++.+||.+||+.||++|||++++++.
T Consensus       219 -------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         219 -------------------EDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             -------------------HccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence                               00111222334678999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.2e-26  Score=205.51  Aligned_cols=175  Identities=35%  Similarity=0.551  Sum_probs=138.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |.+|.+++...  ..++...+..++.|++.|+.|||+. |++||||+|+||++..                  
T Consensus        76 ~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i~~------------------  134 (254)
T cd06627          76 IILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYLHEQ-GVIHRDIKAANILTTK------------------  134 (254)
T ss_pred             EEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCHHHEEECC------------------
Confidence            578999 78999998875  4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---ccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---AEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~  156 (329)
                                                                            ...++|+|||.+.......   ....
T Consensus       135 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  160 (254)
T cd06627         135 ------------------------------------------------------DGVVKLADFGVATKLNDVSKDDASVV  160 (254)
T ss_pred             ------------------------------------------------------CCCEEEeccccceecCCCcccccccc
Confidence                                                                  4578999999986554322   2345


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||...+..++.++|+||+|+++|+|++|..||....      .......+..  +                  
T Consensus       161 ~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~------~~~~~~~~~~--~------------------  214 (254)
T cd06627         161 GTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN------PMAALFRIVQ--D------------------  214 (254)
T ss_pred             cchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHhc--c------------------
Confidence            6788999999988888999999999999999999999997541      1111111100  0                  


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                           .....+...+..+.+++.+||..+|++|||+.+++.||||
T Consensus       215 ---------------------~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         215 ---------------------DHPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence                                 0011223346788999999999999999999999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.94  E-value=1.3e-26  Score=207.02  Aligned_cols=172  Identities=22%  Similarity=0.380  Sum_probs=131.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||++..                  
T Consensus        71 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~nil~~~------------------  130 (257)
T cd05115          71 LVMEMASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGK-NFVHRDLAARNVLLVN------------------  130 (257)
T ss_pred             EEEEeCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhc-CeeecccchheEEEcC------------------
Confidence            589999 889999887543 3589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       131 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  156 (257)
T cd05115         131 ------------------------------------------------------QHYAKISDFGLSKALGADDSYYKARS  156 (257)
T ss_pred             ------------------------------------------------------CCcEEeccCCccccccCCccceeccC
Confidence                                                                  346899999988543321      11


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+..  |.             
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~-------------  215 (257)
T cd05115         157 AGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK------GPEVMSFIEQ--GK-------------  215 (257)
T ss_pred             CCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHC--CC-------------
Confidence            1122467999999988889999999999999999996 999997652      2222111110  00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+..++.++.++|.+||..+|++||++.++++
T Consensus       216 --------------------------~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         216 --------------------------RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             --------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                      01123344678999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=1.5e-27  Score=225.07  Aligned_cols=180  Identities=26%  Similarity=0.451  Sum_probs=151.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |+.+++++..+.  .+.+.+++.++.|++.|++|||++ +|||||||++|+++                    
T Consensus       132 lV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~k-~ivHrdLk~eNilL--------------------  188 (596)
T KOG0586|consen  132 LVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHSK-NIVHRDLKAENILL--------------------  188 (596)
T ss_pred             EEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhhc-ceeccccchhhccc--------------------
Confidence            699999 999999999874  467799999999999999999997 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +....++|+|||++..+.  ......+|
T Consensus       189 ----------------------------------------------------~~~mnikIaDfgfS~~~~~~~~lqt~cg  216 (596)
T KOG0586|consen  189 ----------------------------------------------------DENMNIKIADFGFSTFFDYGLMLQTFCG  216 (596)
T ss_pred             ----------------------------------------------------ccccceeeeccccceeecccccccccCC
Confidence                                                                335579999999995554  34456789


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|.|||++.+..| ++.+|+||+|+++|.|+.|..||.+..-...                                 
T Consensus       217 sppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~L---------------------------------  263 (596)
T KOG0586|consen  217 SPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKEL---------------------------------  263 (596)
T ss_pred             CCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccccc---------------------------------
Confidence            999999999999876 6899999999999999999999987631000                                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                     ..+.+..++..+...+.++.++|+++|..+|.+|++.++++.|.|+....+.
T Consensus       264 ---------------r~rvl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  264 ---------------RPRVLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             ---------------cchheeeeecccceeechhHHHHHHhhccCccccCCHHHhhhhcccchhhhh
Confidence                           1223344455666667899999999999999999999999999999987655

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.94  E-value=1.6e-26  Score=206.25  Aligned_cols=173  Identities=23%  Similarity=0.390  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..+++..+..++.||+.||+|||++ |++|+||||+||++.                   
T Consensus        76 lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~nili~-------------------  134 (256)
T cd05113          76 IVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESK-QFIHRDLAARNCLVD-------------------  134 (256)
T ss_pred             EEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccCcceEEEc-------------------
Confidence            589999 889999987653 2589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cc---cC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FA---EE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~---~~  155 (329)
                                                                           ....++|+|||.+...... ..   ..
T Consensus       135 -----------------------------------------------------~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05113         135 -----------------------------------------------------DQGCVKVSDFGLSRYVLDDEYTSSVGS  161 (256)
T ss_pred             -----------------------------------------------------CCCCEEECCCccceecCCCceeecCCC
Confidence                                                                 2457999999987543321 11   12


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+.....                
T Consensus       162 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~~~~----------------  219 (256)
T cd05113         162 KFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN------NSETVEKVSQGLR----------------  219 (256)
T ss_pred             ccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHhcCCC----------------
Confidence            34567999999988889999999999999999998 999997552      2222222211000                


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                               ...+...+..+.+++.+||+.+|++|||+.+++++
T Consensus       220 -------------------------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         220 -------------------------LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence                                     00112235688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.7e-26  Score=206.41  Aligned_cols=173  Identities=24%  Similarity=0.392  Sum_probs=133.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.|+.|||++ |++||||||+||++.                   
T Consensus        78 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  137 (261)
T cd05068          78 IVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ-NYIHRDLAARNVLVG-------------------  137 (261)
T ss_pred             eeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCcceEEEc-------------------
Confidence            589999 99999999875544589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-ccCC--
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-AEEI--  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~--  156 (329)
                                                                           ....++|+|||.+....... ....  
T Consensus       138 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (261)
T cd05068         138 -----------------------------------------------------ENNICKVADFGLARVIKEDIYEAREGA  164 (261)
T ss_pred             -----------------------------------------------------CCCCEEECCcceEEEccCCcccccCCC
Confidence                                                                 24578999999986544221 1112  


Q ss_pred             -CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          157 -QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       157 -~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                       .+..|+|||.+.+..++.++|+|||||++|+|++ |..||.+.      .....+..+.... .               
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~------~~~~~~~~~~~~~-~---------------  222 (261)
T cd05068         165 KFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM------TNAEVLQQVDQGY-R---------------  222 (261)
T ss_pred             cCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC------CHHHHHHHHHcCC-C---------------
Confidence             2347999999998889999999999999999999 99999764      2222222221100 0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ...+...+..+.+++.+||+.+|++||++.++++
T Consensus       223 -------------------------~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         223 -------------------------MPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             -------------------------CCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                     0112234568899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.94  E-value=1.7e-26  Score=205.83  Aligned_cols=172  Identities=27%  Similarity=0.426  Sum_probs=131.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++|+||+|+||++..                  
T Consensus        76 iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~ni~i~~------------------  135 (256)
T cd05114          76 IVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERN-SFIHRDLAARNCLVSS------------------  135 (256)
T ss_pred             EEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccCcceEEEcC------------------
Confidence            589999 899999987643 3488999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       136 ------------------------------------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05114         136 ------------------------------------------------------TGVVKVSDFGMTRYVLDDEYTSSSGA  161 (256)
T ss_pred             ------------------------------------------------------CCeEEECCCCCccccCCCceeccCCC
Confidence                                                                  346899999988543221    1122


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+||+||++|+|++ |+.||...      +....+..+.+  +.               
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~------~~~~~~~~i~~--~~---------------  218 (256)
T cd05114         162 KFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK------SNYEVVEMISR--GF---------------  218 (256)
T ss_pred             CCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC------CHHHHHHHHHC--CC---------------
Confidence            34567999999988889999999999999999999 89999765      22222222211  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+|+.+||..+|++|||++|+++
T Consensus       219 ------------------------~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         219 ------------------------RLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                    00012223457899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.94  E-value=1.9e-26  Score=204.91  Aligned_cols=172  Identities=21%  Similarity=0.375  Sum_probs=129.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..+++..+..++.|++.||.|||++ |++||||||+||++..                  
T Consensus        70 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~-~i~H~dl~p~nil~~~------------------  129 (252)
T cd05084          70 IVMELVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESK-HCIHRDLAARNCLVTE------------------  129 (252)
T ss_pred             EEEeeccCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchheEEEcC------------------
Confidence            589999 889999987542 3588999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccccc-----
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE-----  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~-----  154 (329)
                                                                            ...++|+|||.+.........     
T Consensus       130 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (252)
T cd05084         130 ------------------------------------------------------KNVLKISDFGMSREEEDGVYASTGGM  155 (252)
T ss_pred             ------------------------------------------------------CCcEEECccccCcccccccccccCCC
Confidence                                                                  346899999998543321111     


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...+..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.. ..               
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~------~~~~~~~~~~-~~---------------  213 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS------NQQTREAIEQ-GV---------------  213 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC------HHHHHHHHHc-CC---------------
Confidence            112446999999988889999999999999999997 888886541      1111111110 00               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ....+...+..+.+|+.+||+.+|++|||+.++++
T Consensus       214 -------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         214 -------------------------RLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             -------------------------CCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                     00112234568899999999999999999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.94  E-value=2.1e-26  Score=210.69  Aligned_cols=174  Identities=24%  Similarity=0.396  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......+++..+..++.|++.||.|||++ |++|+||||+||++..                  
T Consensus       116 lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~~~------------------  176 (302)
T cd05055         116 VITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNVLLTH------------------  176 (302)
T ss_pred             EEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeehhhhccceEEEcC------------------
Confidence            589999 89999999865444589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                            ...++|+|||.+......     ...
T Consensus       177 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  202 (302)
T cd05055         177 ------------------------------------------------------GKIVKICDFGLARDIMNDSNYVVKGN  202 (302)
T ss_pred             ------------------------------------------------------CCeEEECCCcccccccCCCceeecCC
Confidence                                                                  346899999998544321     112


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++||||+||++|+|++ |..||....      .......+... +.              
T Consensus       203 ~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~------~~~~~~~~~~~-~~--------------  261 (302)
T cd05055         203 ARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP------VDSKFYKLIKE-GY--------------  261 (302)
T ss_pred             CCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC------chHHHHHHHHc-CC--------------
Confidence            234668999999998889999999999999999998 999997652      11111111000 00              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ....+...+..+.+|+.+||..+|++|||+.|+++
T Consensus       262 -------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         262 -------------------------RMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             -------------------------cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                     00011223568999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.7e-26  Score=207.16  Aligned_cols=174  Identities=24%  Similarity=0.358  Sum_probs=131.7

Q ss_pred             Cccccc-chhHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~----~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      +||||+ +++|..++....    ...+++..+..++.|++.||.|||++ |++||||||+||++.               
T Consensus        84 ~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~-~i~H~dlkp~Nil~~---------------  147 (273)
T cd05035          84 VILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR-NFIHRDLAARNCMLR---------------  147 (273)
T ss_pred             EEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC-CeeccccchheEEEC---------------
Confidence            478999 889998886542    13488999999999999999999995 999999999999992               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc---
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF---  152 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~---  152 (329)
                                                                               ....++|+|||.+.......   
T Consensus       148 ---------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~  170 (273)
T cd05035         148 ---------------------------------------------------------EDMTVCVADFGLSKKIYSGDYYR  170 (273)
T ss_pred             ---------------------------------------------------------CCCeEEECCccceeecccccccc
Confidence                                                                     24578999999985543211   


Q ss_pred             --ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          153 --AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       153 --~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                        .....+..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      .......+.   ...         
T Consensus       171 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~------~~~~~~~~~---~~~---------  232 (273)
T cd05035         171 QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE------NHEIYDYLR---HGN---------  232 (273)
T ss_pred             ccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHH---cCC---------
Confidence              11234567999999988889999999999999999998 888886542      222211111   000         


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                   ....+...+..+.+++++||+.||.+|||+.|++++
T Consensus       233 -----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         233 -----------------------------RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             -----------------------------CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                         001122345689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.8e-26  Score=205.73  Aligned_cols=173  Identities=23%  Similarity=0.366  Sum_probs=132.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.|++|||+. |++|+||||+||++.                   
T Consensus        76 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~ni~i~-------------------  134 (256)
T cd05059          76 IVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESN-GFIHRDLAARNCLVG-------------------  134 (256)
T ss_pred             EEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CcccccccHhhEEEC-------------------
Confidence            589999 899999998654 3588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-cc---C
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-AE---E  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-~~---~  155 (329)
                                                                           ....++|+|||.+....... ..   .
T Consensus       135 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  161 (256)
T cd05059         135 -----------------------------------------------------EDNVVKVSDFGLARYVLDDQYTSSQGT  161 (256)
T ss_pred             -----------------------------------------------------CCCcEEECCcccceecccccccccCCC
Confidence                                                                 24568999999885443221 11   1


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|++++ |..||...      .+......+....                 
T Consensus       162 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~------~~~~~~~~~~~~~-----------------  218 (256)
T cd05059         162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF------SNSEVVESVSAGY-----------------  218 (256)
T ss_pred             CCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCC------CHHHHHHHHHcCC-----------------
Confidence            22347999999998889999999999999999998 89999654      1222222111100                 


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+++.+||..+|++|||+.|+++.
T Consensus       219 ------------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         219 ------------------------RLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             ------------------------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence                                    001122346689999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.94  E-value=2.1e-26  Score=205.69  Aligned_cols=173  Identities=24%  Similarity=0.390  Sum_probs=134.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||+|||+ .|++|+||||+||++.                   
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~-~~i~H~dl~p~ni~i~-------------------  136 (260)
T cd05067          77 IITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIER-KNYIHRDLRAANILVS-------------------  136 (260)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhc-CCeecccccHHhEEEc-------------------
Confidence            589999 8999999877655568999999999999999999999 5999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       137 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05067         137 -----------------------------------------------------ETLCCKIADFGLARLIEDNEYTAREGA  163 (260)
T ss_pred             -----------------------------------------------------CCCCEEEccCcceeecCCCCcccccCC
Confidence                                                                 2457899999998654421    1122


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.....                
T Consensus       164 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~~~~----------------  221 (260)
T cd05067         164 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT------NPEVIQNLERGYR----------------  221 (260)
T ss_pred             cccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHHHcCCC----------------
Confidence            34568999999988889999999999999999998 999997652      2222222211000                


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ...+...+.++.+|+++||..+|++|||++++++
T Consensus       222 -------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         222 -------------------------MPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                                     0112233568999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.94  E-value=2.3e-26  Score=207.99  Aligned_cols=174  Identities=21%  Similarity=0.337  Sum_probs=132.0

Q ss_pred             Cccccc-chhHHHHHHhhc---------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR---------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTID   64 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~---------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~   64 (329)
                      +||||+ +++|.+++....               ...++...+..++.|++.||.|||++ |++|+||||+||+++.   
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp~nili~~---  159 (283)
T cd05090          84 MLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH-FFVHKDLAARNILIGE---  159 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc-CeehhccccceEEEcC---
Confidence            589999 789999986432               12377888999999999999999995 9999999999999932   


Q ss_pred             CCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCc
Q 020248           65 PSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGN  144 (329)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~  144 (329)
                                                                                           ...++|+|||.
T Consensus       160 ---------------------------------------------------------------------~~~~kl~dfg~  170 (283)
T cd05090         160 ---------------------------------------------------------------------QLHVKISDLGL  170 (283)
T ss_pred             ---------------------------------------------------------------------CCcEEeccccc
Confidence                                                                                 34689999999


Q ss_pred             cccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhC
Q 020248          145 ACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIG  218 (329)
Q Consensus       145 a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g  218 (329)
                      +.....     ......++..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      .... ..+.....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~------~~~~-~~~~~~~~  243 (283)
T cd05090         171 SREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS------NQEV-IEMVRKRQ  243 (283)
T ss_pred             cccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC------HHHH-HHHHHcCC
Confidence            855422     1223344667999999988889999999999999999998 999987641      1111 11111100


Q ss_pred             CCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          219 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                      .                                        ...+...+..+.+++.+||+.||++||++.+|+++
T Consensus       244 ~----------------------------------------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         244 L----------------------------------------LPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             c----------------------------------------CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence            0                                        01223345688999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.94  E-value=2.2e-26  Score=208.08  Aligned_cols=174  Identities=17%  Similarity=0.353  Sum_probs=131.4

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +++||+ +.+|.+++....              ...++...+..++.|++.||.|||++ |++||||||+||++..    
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~-gi~H~dlkp~Nil~~~----  159 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH-HVVHKDLATRNVLVFD----  159 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc-CccccccchhheEecC----
Confidence            468898 789999986421              12478888999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       160 --------------------------------------------------------------------~~~~kl~Dfg~~  171 (283)
T cd05091         160 --------------------------------------------------------------------KLNVKISDLGLF  171 (283)
T ss_pred             --------------------------------------------------------------------CCceEecccccc
Confidence                                                                                346899999987


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||.+.      .....+..+...  .
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~------~~~~~~~~i~~~--~  243 (283)
T cd05091         172 REVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY------SNQDVIEMIRNR--Q  243 (283)
T ss_pred             cccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC------CHHHHHHHHHcC--C
Confidence            544321     122334678999999998889999999999999999998 88888654      222222222110  0


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+..++..+.+|+.+||+.+|++|||+++|++.
T Consensus       244 ---------------------------------------~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         244 ---------------------------------------VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             ---------------------------------------cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence                                                   001233456788999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=1.6e-26  Score=209.15  Aligned_cols=183  Identities=23%  Similarity=0.306  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++...   .++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus        85 lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~-~i~H~dlkp~Nili~-------------------  141 (283)
T cd05080          85 LIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQ-HYIHRDLAARNVLLD-------------------  141 (283)
T ss_pred             EEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHC-CeeccccChheEEEc-------------------
Confidence            589999 88999999764   389999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       142 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  168 (283)
T cd05080         142 -----------------------------------------------------NDRLVKIGDFGLAKAVPEGHEYYRVRE  168 (283)
T ss_pred             -----------------------------------------------------CCCcEEEeecccccccCCcchhhccCC
Confidence                                                                 24578999999986543211      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|||||||++|+|++|..||.....       .....+....+....           
T Consensus       169 ~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~-------~~~~~~~~~~~~~~~-----------  230 (283)
T cd05080         169 DGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPK-------KFEEMIGPKQGQMTV-----------  230 (283)
T ss_pred             CCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcc-------hhhhhhcccccccch-----------
Confidence            12345679999999888899999999999999999999999865410       000000000000000           


Q ss_pred             ccCccCchhhhccccccchhHHHhh--hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                      ....+....  ..+.+...+..+.+|+.+||..+|++|||++++++
T Consensus       231 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         231 ----------------VRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             ----------------hhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                            000000000  01123445679999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=2.5e-26  Score=204.79  Aligned_cols=171  Identities=23%  Similarity=0.405  Sum_probs=131.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++....  .++...+..++.|++.||.|||.. |++|+||||+||++.                   
T Consensus        72 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~-~i~H~di~p~nili~-------------------  129 (257)
T cd05060          72 LVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESK-HFVHRDLAARNVLLV-------------------  129 (257)
T ss_pred             EEEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhc-CeeccCcccceEEEc-------------------
Confidence            589999 889999998754  489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA------  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~------  153 (329)
                                                                           ....++|+|||.+........      
T Consensus       130 -----------------------------------------------------~~~~~kl~df~~~~~~~~~~~~~~~~~  156 (257)
T cd05060         130 -----------------------------------------------------NRHQAKISDFGMSRALGAGSDYYRATT  156 (257)
T ss_pred             -----------------------------------------------------CCCcEEeccccccceeecCCccccccc
Confidence                                                                 245789999999854432111      


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.. ..              
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~------~~~~~~~~~~-~~--------------  215 (257)
T cd05060         157 AGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK------GAEVIAMLES-GE--------------  215 (257)
T ss_pred             CccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHc-CC--------------
Confidence            1112457999999998889999999999999999997 999997651      2222221110 00              


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+++.+||..+|++|||+.++++
T Consensus       216 --------------------------~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         216 --------------------------RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             --------------------------cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                      00112234568899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.94  E-value=6.7e-26  Score=201.19  Aligned_cols=177  Identities=30%  Similarity=0.455  Sum_probs=137.7

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |.+|.+++....  ...++...+..++.|++.||+|||+. |++|+||+|+||++..                
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~-~i~h~~l~~~ni~~~~----------------  138 (256)
T cd08530          76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ-KILHRDLKSANILLVA----------------  138 (256)
T ss_pred             EEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC-CcccCCCCcceEEEec----------------
Confidence            589999 889999887632  24588899999999999999999995 9999999999999933                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~  156 (329)
                                                                              ...++|+|||.+...... .....
T Consensus       139 --------------------------------------------------------~~~~kl~d~g~~~~~~~~~~~~~~  162 (256)
T cd08530         139 --------------------------------------------------------NDLVKIGDLGISKVLKKNMAKTQI  162 (256)
T ss_pred             --------------------------------------------------------CCcEEEeeccchhhhccCCccccc
Confidence                                                                    356899999998554432 22245


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||.+.+..++.++|+||+|+++|+|++|+.||....      .......+.  .+..                
T Consensus       163 ~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~--~~~~----------------  218 (256)
T cd08530         163 GTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS------MQDLRYKVQ--RGKY----------------  218 (256)
T ss_pred             CCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHh--cCCC----------------
Confidence            6789999999998889999999999999999999999997652      111111110  0000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                             ...+...+..+.+++.+||+.+|++|||+.|+++||.+
T Consensus       219 -----------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         219 -----------------------PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             -----------------------CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence                                   01122345679999999999999999999999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.94  E-value=2.3e-26  Score=207.59  Aligned_cols=177  Identities=23%  Similarity=0.379  Sum_probs=129.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|..++.... ..+++..+..++.||+.||+|||++ ||+||||||+||++.....               
T Consensus        93 lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~Nill~~~~~---------------  155 (274)
T cd05076          93 MVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLEDK-NLVHGNVCAKNILLARLGL---------------  155 (274)
T ss_pred             EEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcC-CccCCCCCcccEEEeccCc---------------
Confidence            589999 889988887543 4589999999999999999999995 9999999999999943100               


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                        .+.....++++|||.+...... ....++.
T Consensus       156 --------------------------------------------------~~~~~~~~kl~d~g~~~~~~~~-~~~~~~~  184 (274)
T cd05076         156 --------------------------------------------------AEGTSPFIKLSDPGVSFTALSR-EERVERI  184 (274)
T ss_pred             --------------------------------------------------ccCccceeeecCCccccccccc-cccccCC
Confidence                                                              0012335799999987543322 2345677


Q ss_pred             CCcchHHhhc-CCCCccchHHHHHHHHHHH-HhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          160 QYRAPEVILR-AGYSFSVDMWSFACTAFEL-ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       160 ~y~aPE~~~~-~~~s~~~DiwslG~il~~l-~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      .|+|||.+.+ ..++.++|+|||||++|++ ++|..||....      .... ....                       
T Consensus       185 ~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~-~~~~-----------------------  234 (274)
T cd05076         185 PWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERT------PSEK-ERFY-----------------------  234 (274)
T ss_pred             cccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccC------hHHH-HHHH-----------------------
Confidence            8999998876 4689999999999999998 56899886542      1110 0000                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                         ......+......+.++|++||..+|++|||+.+++++
T Consensus       235 -------------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         235 -------------------EKKHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             -------------------HhccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence                               00001111223468899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.94  E-value=2.5e-26  Score=207.74  Aligned_cols=173  Identities=22%  Similarity=0.350  Sum_probs=131.2

Q ss_pred             Cccccc-chhHHHHHHhhcC-------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS   66 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~   66 (329)
                      +||||+ +++|.+++.....             ..+++..+..++.||+.|++|||+. |++||||||+||++.      
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp~nil~~------  156 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL-HFVHRDLATRNCLVG------  156 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC-CeecccccHhhEEEc------
Confidence            589999 8999999876431             2378899999999999999999995 999999999999993      


Q ss_pred             CCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc
Q 020248           67 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  146 (329)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~  146 (329)
                                                                                        ....++|+|||.+.
T Consensus       157 ------------------------------------------------------------------~~~~~kL~dfg~~~  170 (280)
T cd05092         157 ------------------------------------------------------------------QGLVVKIGDFGMSR  170 (280)
T ss_pred             ------------------------------------------------------------------CCCCEEECCCCcee
Confidence                                                                              24578999999885


Q ss_pred             ccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 020248          147 RANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  220 (329)
Q Consensus       147 ~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~  220 (329)
                      .....     .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||....      ....+..+..  +. 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~-  241 (280)
T cd05092         171 DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS------NTEAIECITQ--GR-  241 (280)
T ss_pred             EcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC------HHHHHHHHHc--Cc-
Confidence            43221     112234678999999999899999999999999999998 999986542      1111111110  00 


Q ss_pred             cHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          221 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                            ....+...+..+.+|+.+||+.||++||++.|+++
T Consensus       242 --------------------------------------~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         242 --------------------------------------ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             --------------------------------------cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                                                  00112234567889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.94  E-value=1.7e-26  Score=211.42  Aligned_cols=174  Identities=20%  Similarity=0.305  Sum_probs=131.1

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++....              ...++...+..++.|++.|++|||++ |++||||||+||+++     
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-gi~H~dlkp~Nili~-----  158 (303)
T cd05088          85 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVG-----  158 (303)
T ss_pred             EEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC-CccccccchheEEec-----
Confidence            589999 899999997542              12478899999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       159 -------------------------------------------------------------------~~~~~kl~dfg~~  171 (303)
T cd05088         159 -------------------------------------------------------------------ENYVAKIADFGLS  171 (303)
T ss_pred             -------------------------------------------------------------------CCCcEEeCccccC
Confidence                                                                               2457899999998


Q ss_pred             cccccc--cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          146 CRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       146 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ......  ......+..|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+.   ...  
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~---~~~--  240 (303)
T cd05088         172 RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLP---QGY--  240 (303)
T ss_pred             cccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCC------hHHHHHHHh---cCC--
Confidence            533211  111223567999999988889999999999999999998 999997542      111111110   000  


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                          ....+...+..+.+|+.+||+.+|++|||+.+++++
T Consensus       241 ------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         241 ------------------------------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             ------------------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                000112235678999999999999999999999885

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.6e-26  Score=205.78  Aligned_cols=173  Identities=23%  Similarity=0.402  Sum_probs=132.0

Q ss_pred             Cccccc-chhHHHHHHhhcC--------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ +++|.+++.....        ..+++..+..++.|++.||.|||+. |++|+||||+||++.           
T Consensus        86 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~di~p~nill~-----------  153 (277)
T cd05032          86 VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK-KFVHRDLAARNCMVA-----------  153 (277)
T ss_pred             EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccccChheEEEc-----------
Confidence            589999 8899999875321        2367788999999999999999995 999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  150 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-  150 (329)
                                                                                   ....++|+|||.+..... 
T Consensus       154 -------------------------------------------------------------~~~~~kl~dfg~~~~~~~~  172 (277)
T cd05032         154 -------------------------------------------------------------EDLTVKIGDFGMTRDIYET  172 (277)
T ss_pred             -------------------------------------------------------------CCCCEEECCcccchhhccC
Confidence                                                                         245789999998854332 


Q ss_pred             ----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          151 ----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       151 ----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                          ......++..|+|||.+.+..++.++|||||||++|++++ |..||....      .......+.  .+.      
T Consensus       173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~--~~~------  238 (277)
T cd05032         173 DYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS------NEEVLKFVI--DGG------  238 (277)
T ss_pred             cccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC------HHHHHHHHh--cCC------
Confidence                1223345678999999988889999999999999999998 999987542      222111111  000      


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                       ....+...+..+.+|+.+||+.+|++|||+.++++
T Consensus       239 ---------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         239 ---------------------------------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             ---------------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                             00122334678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=3.3e-26  Score=204.24  Aligned_cols=173  Identities=25%  Similarity=0.397  Sum_probs=134.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.|+.|||++ |++|+||||+||+++                   
T Consensus        78 ~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~-~i~h~di~p~nili~-------------------  137 (261)
T cd05034          78 IVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR-NYIHRDLAARNILVG-------------------  137 (261)
T ss_pred             EEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcchheEEEc-------------------
Confidence            589999 88999999876545689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       138 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  164 (261)
T cd05034         138 -----------------------------------------------------ENLVCKIADFGLARLIEDDEYTAREGA  164 (261)
T ss_pred             -----------------------------------------------------CCCCEEECccccceeccchhhhhhhcc
Confidence                                                                 3457899999998654421    1112


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..+..|+|||.+.+..++.++|+||+||++|++++ |+.||.+.      .....+..+.....                
T Consensus       165 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~------~~~~~~~~~~~~~~----------------  222 (261)
T cd05034         165 KFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM------TNREVLEQVERGYR----------------  222 (261)
T ss_pred             CCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHcCCC----------------
Confidence            23557999999998889999999999999999998 99999765      22223332211000                


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ...+...+..+.+++.+||+.+|++|||++++++
T Consensus       223 -------------------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         223 -------------------------MPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                     0112223567899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.94  E-value=3.6e-26  Score=204.66  Aligned_cols=177  Identities=23%  Similarity=0.359  Sum_probs=133.2

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.|++.||.|||++ |++|+||+|+||+++.                
T Consensus        79 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~~~nil~~~----------------  141 (267)
T cd08228          79 IVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR-RVMHRDIKPANVFITA----------------  141 (267)
T ss_pred             EEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCCHHHEEEcC----------------
Confidence            579999 789998886432  23478899999999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                              ...++|+|||.+......   ...
T Consensus       142 --------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~  165 (267)
T cd08228         142 --------------------------------------------------------TGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             --------------------------------------------------------CCCEEECccccceeccchhHHHhc
Confidence                                                                    346899999988654432   123


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..++..|+|||.+.+..++.++|+||+||++|+|++|..||....     .+...+.......+..|             
T Consensus       166 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~-----~~~~~~~~~~~~~~~~~-------------  227 (267)
T cd08228         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK-----MNLFSLCQKIEQCDYPP-------------  227 (267)
T ss_pred             CCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc-----ccHHHHHHHHhcCCCCC-------------
Confidence            467789999999998889999999999999999999999996531     11111111111111100             


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                ......+..+.+||++||..+|++|||+.|+++.
T Consensus       228 --------------------------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~  261 (267)
T cd08228         228 --------------------------LPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQI  261 (267)
T ss_pred             --------------------------CChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHH
Confidence                                      0112235678999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.94  E-value=3.1e-26  Score=209.90  Aligned_cols=174  Identities=21%  Similarity=0.354  Sum_probs=131.7

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++.....              ..+++..+..++.|++.||+|||+ .|++|+||||+||+++     
T Consensus       101 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~-~gi~H~dlkp~Nill~-----  174 (307)
T cd05098         101 VIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS-KKCIHRDLAARNVLVT-----  174 (307)
T ss_pred             EEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH-CCcccccccHHheEEc-----
Confidence            589999 7899999986421              248889999999999999999999 4999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       175 -------------------------------------------------------------------~~~~~kL~dfg~a  187 (307)
T cd05098         175 -------------------------------------------------------------------EDNVMKIADFGLA  187 (307)
T ss_pred             -------------------------------------------------------------------CCCcEEECCCccc
Confidence                                                                               2356899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||.+.+..++.++|+|||||++|+|++ |..||....       ...+......  .
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~--~  258 (307)
T cd05098         188 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-------VEELFKLLKE--G  258 (307)
T ss_pred             ccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC-------HHHHHHHHHc--C
Confidence            544321     111223467999999998889999999999999999998 888886541       1111111100  0


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            .....+...+.++.+|+++||..+|++|||+.|++++
T Consensus       259 --------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         259 --------------------------------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             --------------------------------------CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                                                  0011233346788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.94  E-value=4.6e-26  Score=209.45  Aligned_cols=173  Identities=23%  Similarity=0.404  Sum_probs=131.4

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++....              ...++...+..++.||+.||.|||++ |++|+||||+||++..    
T Consensus        95 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-gi~H~dlkp~Nill~~----  169 (314)
T cd05099          95 VIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR-RCIHRDLAARNVLVTE----  169 (314)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC-CeeeccccceeEEEcC----
Confidence            589999 889999997642              13478889999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       170 --------------------------------------------------------------------~~~~kL~Dfg~~  181 (314)
T cd05099         170 --------------------------------------------------------------------DNVMKIADFGLA  181 (314)
T ss_pred             --------------------------------------------------------------------CCcEEEcccccc
Confidence                                                                                347899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+..  +.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~  253 (314)
T cd05099         182 RGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP------VEELFKLLRE--GH  253 (314)
T ss_pred             ccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC
Confidence            654321     112223457999999998889999999999999999998 888886542      1222221110  00


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                             ....+...+.++.+|+.+||..||++|||+.|+++
T Consensus       254 ---------------------------------------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         254 ---------------------------------------RMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             ---------------------------------------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                                   00112334568889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.94  E-value=3e-26  Score=205.95  Aligned_cols=173  Identities=20%  Similarity=0.308  Sum_probs=129.9

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++....              ...++...+..++.|++.|++|||+. |++|+||||+||++.     
T Consensus        73 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nili~-----  146 (270)
T cd05047          73 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVG-----  146 (270)
T ss_pred             EEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccccceEEEc-----
Confidence            589999 889999987642              12478899999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       147 -------------------------------------------------------------------~~~~~kl~dfgl~  159 (270)
T cd05047         147 -------------------------------------------------------------------ENYVAKIADFGLS  159 (270)
T ss_pred             -------------------------------------------------------------------CCCeEEECCCCCc
Confidence                                                                               2457899999987


Q ss_pred             cccccc--cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          146 CRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       146 ~~~~~~--~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ......  ......+..|+|||.+....++.++|+|||||++|+|++ |..||...+      .......+..   .   
T Consensus       160 ~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~------~~~~~~~~~~---~---  227 (270)
T cd05047         160 RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ---G---  227 (270)
T ss_pred             cccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC------HHHHHHHHhC---C---
Confidence            432211  111223557999999988889999999999999999996 999997542      1111111100   0   


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                         .....+...+..+.+|+.+||..||.+|||+.|+++
T Consensus       228 -----------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         228 -----------------------------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             -----------------------------------CCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence                                               000012223567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=4.5e-26  Score=204.06  Aligned_cols=175  Identities=30%  Similarity=0.481  Sum_probs=135.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+....  .++...+..++.|++.||.|||+. |++|+||+|+||++..                  
T Consensus        83 ~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~-~i~H~dl~p~ni~i~~------------------  141 (264)
T cd06653          83 IFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSN-MIVHRDIKGANILRDS------------------  141 (264)
T ss_pred             EEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcC------------------
Confidence            478999 889999987643  488999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||.+.....      ...
T Consensus       142 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (264)
T cd06653         142 ------------------------------------------------------AGNVKLGDFGASKRIQTICMSGTGIK  167 (264)
T ss_pred             ------------------------------------------------------CCCEEECccccccccccccccCcccc
Confidence                                                                  34689999998854432      112


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||....      .   ...+.......+            
T Consensus       168 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~---~~~~~~~~~~~~------------  226 (264)
T cd06653         168 SVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYE------A---MAAIFKIATQPT------------  226 (264)
T ss_pred             ccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccC------H---HHHHHHHHcCCC------------
Confidence            3457888999999998889999999999999999999999996431      1   122222211100            


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                               ....+...+..+.+++++||+ +|.+|||+.++++|||.
T Consensus       227 -------------------------~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         227 -------------------------KPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             -------------------------CCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence                                     001234456789999999999 47999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.94  E-value=6.6e-26  Score=201.32  Aligned_cols=173  Identities=25%  Similarity=0.434  Sum_probs=133.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++||++ |++|.+++.......+++..+..++.|++.|++|||+. |++|+||+|+||+++.                  
T Consensus        78 ~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~-~~~h~dl~~~nil~~~------------------  138 (258)
T smart00219       78 IVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK-NFIHRDLAARNCLVGE------------------  138 (258)
T ss_pred             EEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC-CeeecccccceEEEcc------------------
Confidence            589999 89999999875433389999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc----cC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA----EE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~----~~  155 (329)
                                                                            ...++|+|||.+........    ..
T Consensus       139 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (258)
T smart00219      139 ------------------------------------------------------NLVVKISDFGLSRDLYDDDYYKKKGG  164 (258)
T ss_pred             ------------------------------------------------------CCeEEEcccCCceecccccccccccC
Confidence                                                                  45799999999855443211    12


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+||+||++|+|++ |..||...      +.......+..  +.               
T Consensus       165 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~------~~~~~~~~~~~--~~---------------  221 (258)
T smart00219      165 KLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM------SNEEVLEYLKK--GY---------------  221 (258)
T ss_pred             CCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHhc--CC---------------
Confidence            25678999999988889999999999999999998 78888654      12222222110  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+++.+||..||++|||+.|+++
T Consensus       222 ------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      222 ------------------------RLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             ------------------------CCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence                                    00112224678999999999999999999999975

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=217.60  Aligned_cols=180  Identities=27%  Similarity=0.425  Sum_probs=147.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +|.|+| .|+|..+++++.  .+++..++.||+||+.||.|||++ .  |||||||-+||+++.                
T Consensus       120 ~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG----------------  180 (632)
T KOG0584|consen  120 FITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNG----------------  180 (632)
T ss_pred             eeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcC----------------
Confidence            578999 899999999985  499999999999999999999984 5  999999999999943                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccccc-CC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE-EI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~  156 (329)
                                                                             ..+.|||+|+|+|......+++ .+
T Consensus       181 -------------------------------------------------------~~G~VKIGDLGLAtl~r~s~aksvI  205 (632)
T KOG0584|consen  181 -------------------------------------------------------NLGEVKIGDLGLATLLRKSHAKSVI  205 (632)
T ss_pred             -------------------------------------------------------CcCceeecchhHHHHhhccccceec
Confidence                                                                   2568999999999777765544 59


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |||.|||||+.. ..|...+||||||..+.||+|+.+||..+.     +..++...+.  .|.-|..+            
T Consensus       206 GTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~-----n~AQIYKKV~--SGiKP~sl------------  265 (632)
T KOG0584|consen  206 GTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECT-----NPAQIYKKVT--SGIKPAAL------------  265 (632)
T ss_pred             cCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhC-----CHHHHHHHHH--cCCCHHHh------------
Confidence            999999999988 569999999999999999999999998773     2222333221  23322211            


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                +.-...++++||-+||.. .++|+|+.|+|+||||+.-.
T Consensus       266 --------------------------~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d~  303 (632)
T KOG0584|consen  266 --------------------------SKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDEDG  303 (632)
T ss_pred             --------------------------hccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhcccc
Confidence                                      222256899999999999 99999999999999999753

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.94  E-value=7.4e-27  Score=219.82  Aligned_cols=176  Identities=30%  Similarity=0.521  Sum_probs=135.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|..+| |-+|..+++-.. ..|.+.+...|++||++||.|||.+ +|||+|||..||++.                   
T Consensus       464 IiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK-~IIHrDLKSnNIFl~-------------------  522 (678)
T KOG0193|consen  464 IITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAK-NIIHRDLKSNNIFLH-------------------  522 (678)
T ss_pred             eeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhh-hhhhhhccccceEEc-------------------
Confidence            467789 889999988654 5599999999999999999999997 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----ccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~  154 (329)
                                                                           ....|+|+|||++....     ...-.
T Consensus       523 -----------------------------------------------------~~~kVkIgDFGLatvk~~w~g~~q~~q  549 (678)
T KOG0193|consen  523 -----------------------------------------------------EDLKVKIGDFGLATVKTRWSGEQQLEQ  549 (678)
T ss_pred             -----------------------------------------------------cCCcEEEecccceeeeeeeccccccCC
Confidence                                                                 23689999999984333     22333


Q ss_pred             CCCCCCCcchHHhhcC---CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          155 EIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~---~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ..|..-|||||++...   +|++.+|||||||+.|||++|..||....       .+++--|+..               
T Consensus       550 p~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~-------~dqIifmVGr---------------  607 (678)
T KOG0193|consen  550 PHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQN-------RDQIIFMVGR---------------  607 (678)
T ss_pred             CccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCC-------hhheEEEecc---------------
Confidence            4566789999999754   79999999999999999999999998432       2222111110               


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                       .|                    ...+.......+++++++|+..||.+++++||++.+||.
T Consensus       608 -G~--------------------l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  608 -GY--------------------LMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             -cc--------------------cCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHH
Confidence             00                    000111224556889999999999999999999999886

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=6.3e-26  Score=202.52  Aligned_cols=172  Identities=20%  Similarity=0.319  Sum_probs=127.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.|++.||+|||+. +++||||||+||+++.                  
T Consensus        74 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlk~~nili~~------------------  133 (262)
T cd05058          74 VVLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASK-KFVHRDLAARNCMLDE------------------  133 (262)
T ss_pred             EEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEEcC------------------
Confidence            579999 899999987643 2356777888999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------F  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------~  152 (329)
                                                                            ...++|+|||.+......       .
T Consensus       134 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  159 (262)
T cd05058         134 ------------------------------------------------------SFTVKVADFGLARDIYDKEYYSVHNH  159 (262)
T ss_pred             ------------------------------------------------------CCcEEECCccccccccCCcceeeccc
Confidence                                                                  346899999988543321       1


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhC-CcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....++..|+|||.+.+..++.++|||||||++|+|++| .+||...      +.......+   ...            
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~------~~~~~~~~~---~~~------------  218 (262)
T cd05058         160 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV------DSFDITVYL---LQG------------  218 (262)
T ss_pred             ccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC------CHHHHHHHH---hcC------------
Confidence            122346689999999888899999999999999999995 5566543      111111111   000            


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                .....+...+..+.+++.+||..+|++||++.|+++
T Consensus       219 --------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         219 --------------------------RRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             --------------------------CCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                      000012223567899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.94  E-value=5.2e-26  Score=203.79  Aligned_cols=173  Identities=20%  Similarity=0.386  Sum_probs=132.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.|++|||+. |++|+||||+||+++                   
T Consensus        82 iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~-~i~H~di~p~nili~-------------------  140 (266)
T cd05033          82 IITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEM-NYVHRDLAARNILVN-------------------  140 (266)
T ss_pred             EEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEc-------------------
Confidence            589999 889999997754 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---cc--cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QF--AE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~--~~  154 (329)
                                                                           ....++|+|||.+.....   ..  ..
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (266)
T cd05033         141 -----------------------------------------------------SNLVCKVSDFGLSRRLEDSEATYTTKG  167 (266)
T ss_pred             -----------------------------------------------------CCCCEEECccchhhcccccccceeccC
Confidence                                                                 245789999999866531   11  11


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|+|||||++|++++ |..||...      ........+.... .              
T Consensus       168 ~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~------~~~~~~~~~~~~~-~--------------  226 (266)
T cd05033         168 GKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM------SNQDVIKAVEDGY-R--------------  226 (266)
T ss_pred             CCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC------CHHHHHHHHHcCC-C--------------
Confidence            233567999999998889999999999999999987 99998654      1222222221100 0              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                .+.+...+..+.+|+.+||+.+|++||++.|++++
T Consensus       227 --------------------------~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         227 --------------------------LPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             --------------------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                                      00112335678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.94  E-value=5.4e-26  Score=207.88  Aligned_cols=174  Identities=21%  Similarity=0.369  Sum_probs=131.7

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++.....              ..++...+..++.||+.||.|||++ |++||||||+||+++.    
T Consensus        98 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-givH~dlkp~Nili~~----  172 (304)
T cd05101          98 VIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ-KCIHRDLAARNVLVTE----  172 (304)
T ss_pred             EEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC-CeeecccccceEEEcC----
Confidence            589999 8899999986421              2477888999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       173 --------------------------------------------------------------------~~~~kl~D~g~~  184 (304)
T cd05101         173 --------------------------------------------------------------------NNVMKIADFGLA  184 (304)
T ss_pred             --------------------------------------------------------------------CCcEEECCCccc
Confidence                                                                                347899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||++.+..++.++|||||||++|++++ |..||...+      .......+.   ..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~---~~  255 (304)
T cd05101         185 RDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLK---EG  255 (304)
T ss_pred             eecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHH---cC
Confidence            654321     122234567999999998889999999999999999998 788886542      111111110   00


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            .....+...+..+.+|+.+||..+|++|||+.|+++.
T Consensus       256 --------------------------------------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         256 --------------------------------------HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             --------------------------------------CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence                                                  0001122346789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=2.4e-26  Score=208.08  Aligned_cols=186  Identities=25%  Similarity=0.410  Sum_probs=132.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ |++||||||+||++..                  
T Consensus        85 lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~-gi~H~dlkp~Nil~~~------------------  144 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVES------------------  144 (284)
T ss_pred             EEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccchheEEEcC------------------
Confidence            589999 999999987643 3489999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       145 ------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~  170 (284)
T cd05079         145 ------------------------------------------------------EHQVKIGDFGLTKAIETDKEYYTVKD  170 (284)
T ss_pred             ------------------------------------------------------CCCEEECCCccccccccCccceeecC
Confidence                                                                  346899999988544321      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|||||||++|+|+++..|+....           .......|+.+.++...      
T Consensus       171 ~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------  233 (284)
T cd05079         171 DLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPM-----------TLFLKMIGPTHGQMTVT------  233 (284)
T ss_pred             CCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCcccc-----------chhhhhcccccccccHH------
Confidence            2345667999999998889999999999999999999876543220           11111222211110000      


Q ss_pred             ccCccCchhhhccccccchhHHHh--hhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                               .        ..+...  ...+.+...+..+.+|+.+||+.||++|||+.+++++
T Consensus       234 ---------~--------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         234 ---------R--------LVRVLEEGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             ---------H--------HHHHHHcCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                     0        000000  0111233456789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=7.6e-26  Score=205.70  Aligned_cols=180  Identities=19%  Similarity=0.302  Sum_probs=132.6

Q ss_pred             Cccccc-chhHHHHHHhhcC---------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI   70 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~   70 (329)
                      +|||++ +++|.+++.....         ..++...+..++.|++.||+|||+. |++|+||||+||+++.         
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~-~i~H~dlkp~Nili~~---------  165 (296)
T cd05051          96 MIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL-NFVHRDLATRNCLVGK---------  165 (296)
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc-CccccccchhceeecC---------
Confidence            589999 8899999876531         2488999999999999999999995 9999999999999933         


Q ss_pred             CCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc
Q 020248           71 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  150 (329)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~  150 (329)
                                                                                     ...++|+|||.+.....
T Consensus       166 ---------------------------------------------------------------~~~~~l~dfg~~~~~~~  182 (296)
T cd05051         166 ---------------------------------------------------------------NYTIKIADFGMSRNLYS  182 (296)
T ss_pred             ---------------------------------------------------------------CCceEEccccceeeccc
Confidence                                                                           45789999999854322


Q ss_pred             c-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh--CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHH
Q 020248          151 Q-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       151 ~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~  223 (329)
                      .     .....++..|+|||.+.+..++.++|||||||++|+|++  |..||...      .....+..+.......   
T Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~------~~~~~~~~~~~~~~~~---  253 (296)
T cd05051         183 SDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHL------TDQQVIENAGHFFRDD---  253 (296)
T ss_pred             CcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCc------ChHHHHHHHHhccccc---
Confidence            1     122344678999999998889999999999999999988  67777654      2222333222111000   


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                     ...                .....+...+.++.+|+.+||+.||++|||+.|+++
T Consensus       254 ---------------~~~----------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         254 ---------------GRQ----------------IYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             ---------------ccc----------------ccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence                           000                000012233568999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.93  E-value=8.1e-26  Score=190.26  Aligned_cols=168  Identities=23%  Similarity=0.310  Sum_probs=122.1

Q ss_pred             hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCC
Q 020248            8 DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSING   87 (329)
Q Consensus         8 ~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (329)
                      ++|.+++.... .++++..+..++.||+.||.|||++ +      ||+||++..                          
T Consensus         1 GsL~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~lH~~-~------kp~Nil~~~--------------------------   46 (176)
T smart00750        1 VSLADILEVRG-RPLNEEEIWAVCLQCLRALRELHRQ-A------KSGNILLTW--------------------------   46 (176)
T ss_pred             CcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhc-C------CcccEeEcC--------------------------
Confidence            57899988642 4699999999999999999999985 6      999999832                          


Q ss_pred             CCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCCCcchHHh
Q 020248           88 GSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVI  167 (329)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~y~aPE~~  167 (329)
                                                                    ...+++  ||.+......  ...|++.|+|||++
T Consensus        47 ----------------------------------------------~~~~~~--fG~~~~~~~~--~~~g~~~y~aPE~~   76 (176)
T smart00750       47 ----------------------------------------------DGLLKL--DGSVAFKTPE--QSRVDPYFMAPEVI   76 (176)
T ss_pred             ----------------------------------------------ccceee--ccceEeeccc--cCCCcccccChHHh
Confidence                                                          345666  9987554432  23678999999999


Q ss_pred             hcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccc
Q 020248          168 LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL  247 (329)
Q Consensus       168 ~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (329)
                      .+..++.++||||+||++|+|++|..||.....     ....+..+........   .            .         
T Consensus        77 ~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-----~~~~~~~~~~~~~~~~---~------------~---------  127 (176)
T smart00750       77 QGQSYTEKADIYSLGITLYEALDYELPYNEERE-----LSAILEILLNGMPADD---P------------R---------  127 (176)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHhCCCCccccch-----hcHHHHHHHHHhccCC---c------------c---------
Confidence            999999999999999999999999999965421     1111111111000000   0            0         


Q ss_pred             cccchhHHHhhhcCCChhhH--HHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          248 KFWSLDRLLVDKYRFSETDA--REFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~--~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                           .      ........  ..+.+||.+||..||++|||+.|+++|+|+..
T Consensus       128 -----~------~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      128 -----D------RSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             -----c------cccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence                 0      00011112  36899999999999999999999999999874

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.93  E-value=9.3e-26  Score=201.97  Aligned_cols=176  Identities=24%  Similarity=0.354  Sum_probs=131.8

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...+++..+..++.||+.||.|||+. |++|+||+|+||++..                
T Consensus        79 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~-~i~H~dl~p~nili~~----------------  141 (267)
T cd08229          79 IVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFITA----------------  141 (267)
T ss_pred             EEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEcC----------------
Confidence            579999 889999887432  23488999999999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                              ...++|+|||.+......   ...
T Consensus       142 --------------------------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd08229         142 --------------------------------------------------------TGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             --------------------------------------------------------CCCEEECcchhhhccccCCccccc
Confidence                                                                    446999999987544322   123


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..++..|+|||.+.+..++.++|+||+||++|+|++|..||.+..     .+...+..........              
T Consensus       166 ~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~~--------------  226 (267)
T cd08229         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK-----MNLYSLCKKIEQCDYP--------------  226 (267)
T ss_pred             ccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCccccc-----chHHHHhhhhhcCCCC--------------
Confidence            467889999999988889999999999999999999999996541     0000000000000000              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ...+...+..+.+|+.+||..||++|||+.+|++
T Consensus       227 -------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         227 -------------------------PLPSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             -------------------------CCCcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence                                     0011234668999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.93  E-value=1.3e-25  Score=201.30  Aligned_cols=178  Identities=25%  Similarity=0.412  Sum_probs=132.3

Q ss_pred             Cccccc-chhHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +||||+ |++|.+++.....     ..+++..+..++.|++.|+.|||++ +++|+||+|+||++.....          
T Consensus        76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~-~i~H~dl~p~nil~~~~~~----------  144 (269)
T cd05044          76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM-HFIHRDLAARNCLVSEKGY----------  144 (269)
T ss_pred             EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC-CcccCCCChheEEEecCCC----------
Confidence            589999 8999999875422     2378899999999999999999995 9999999999999944210          


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---  151 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---  151 (329)
                                                                               +....++|+|||.+......   
T Consensus       145 ---------------------------------------------------------~~~~~~~l~dfg~~~~~~~~~~~  167 (269)
T cd05044         145 ---------------------------------------------------------DADRVVKIGDFGLARDIYKSDYY  167 (269)
T ss_pred             ---------------------------------------------------------CCCcceEECCccccccccccccc
Confidence                                                                     11347899999998543221   


Q ss_pred             --cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          152 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       152 --~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                        .....++..|+|||.+.+..++.++|||||||++|+|++ |..||...      +.......+.. .+          
T Consensus       168 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~------~~~~~~~~~~~-~~----------  230 (269)
T cd05044         168 RKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPAL------NNQEVLQHVTA-GG----------  230 (269)
T ss_pred             ccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCccc------CHHHHHHHHhc-CC----------
Confidence              112234678999999998889999999999999999998 99999654      22222221110 00          


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                    ....+...+..+.+||.+||..+|++|||+.++++
T Consensus       231 ------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         231 ------------------------------RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             ------------------------------ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                                          00112234668899999999999999999999865

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.93  E-value=9.7e-26  Score=201.44  Aligned_cols=173  Identities=24%  Similarity=0.412  Sum_probs=132.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||+. |++|+||||+||++.                   
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~ni~i~-------------------  136 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVS-------------------  136 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC-CccccccCcceEEEc-------------------
Confidence            589999 78999999875545588889999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       137 -----------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~  163 (260)
T cd05073         137 -----------------------------------------------------ASLVCKIADFGLARVIEDNEYTAREGA  163 (260)
T ss_pred             -----------------------------------------------------CCCcEEECCCcceeeccCCCcccccCC
Confidence                                                                 2457899999988544321    1112


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+....++.++|+|||||++|++++ |..||....      .......+.   +..              
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~~---~~~--------------  220 (260)
T cd05073         164 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS------NPEVIRALE---RGY--------------  220 (260)
T ss_pred             cccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHh---CCC--------------
Confidence            34567999999988889999999999999999998 999997541      222221111   000              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ........+.++.+++.+||+.+|++||++.++++
T Consensus       221 ------------------------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         221 ------------------------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             ------------------------CCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                                    00011233568999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.93  E-value=1.1e-25  Score=199.48  Aligned_cols=172  Identities=19%  Similarity=0.363  Sum_probs=131.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|+|++ |++|+||||+||++..                  
T Consensus        69 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~~~H~dl~p~nili~~------------------  128 (250)
T cd05085          69 IVMELVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESK-NCIHRDLAARNCLVGE------------------  128 (250)
T ss_pred             EEEECCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccChheEEEcC------------------
Confidence            589999 899999887643 3578999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       129 ------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~  154 (250)
T cd05085         129 ------------------------------------------------------NNVLKISDFGMSRQEDDGIYSSSGLK  154 (250)
T ss_pred             ------------------------------------------------------CCeEEECCCccceeccccccccCCCC
Confidence                                                                  3468999999885433221    112


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.   ...              
T Consensus       155 ~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~------~~~~~~~~~---~~~--------------  211 (250)
T cd05085         155 QIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT------NQQAREQVE---KGY--------------  211 (250)
T ss_pred             CCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC------HHHHHHHHH---cCC--------------
Confidence            33567999999988889999999999999999998 999997541      111111110   000              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+|+.+||..+|++|||+.|+++
T Consensus       212 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         212 ------------------------RMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                    00112234578999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=2.2e-26  Score=205.96  Aligned_cols=173  Identities=28%  Similarity=0.452  Sum_probs=129.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| +++|.+++.......++...+..++.||+.||.|||++ +++|++|++.||++..                  
T Consensus        78 lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~-~iiH~~l~~~nill~~------------------  138 (259)
T PF07714_consen   78 LVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN-NIIHGNLSPSNILLDS------------------  138 (259)
T ss_dssp             EEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEEET------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc------------------
Confidence            589999 78999999997445699999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                            ...+||+|||++.....     ....
T Consensus       139 ------------------------------------------------------~~~~Kl~~f~~~~~~~~~~~~~~~~~  164 (259)
T PF07714_consen  139 ------------------------------------------------------NGQVKLSDFGLSRPISEKSKYKNDSS  164 (259)
T ss_dssp             ------------------------------------------------------TTEEEEESTTTGEETTTSSSEEESTT
T ss_pred             ------------------------------------------------------cccccccccccccccccccccccccc
Confidence                                                                  45899999999866521     1122


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...+..|+|||.+....++.++||||||+++||+++ |..||...      +.......+.+                  
T Consensus       165 ~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~------~~~~~~~~~~~------------------  220 (259)
T PF07714_consen  165 QQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY------DNEEIIEKLKQ------------------  220 (259)
T ss_dssp             SESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS------CHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccc------------------
Confidence            344668999999999889999999999999999999 78888654      22222222210                  


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             ......+..++..+.++|.+||..||++|||+.++++
T Consensus       221 -----------------------~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  221 -----------------------GQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             -----------------------TEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             -----------------------cccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                                   0001123345678999999999999999999999975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.93  E-value=1e-25  Score=202.30  Aligned_cols=172  Identities=20%  Similarity=0.326  Sum_probs=132.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.|++.||.|||+. |++|+||||+||+++.                  
T Consensus        83 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~~~H~dl~p~nili~~------------------  142 (270)
T cd05056          83 IVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESK-RFVHRDIAARNVLVSS------------------  142 (270)
T ss_pred             EEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccccChheEEEec------------------
Confidence            589999 899999997653 3589999999999999999999994 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       143 ------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~  168 (270)
T cd05056         143 ------------------------------------------------------PDCVKLGDFGLSRYLEDESYYKASKG  168 (270)
T ss_pred             ------------------------------------------------------CCCeEEccCceeeecccccceecCCC
Confidence                                                                  3578999999885543221    112


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+....++.++|+|||||++|++++ |..||.+..      .......+..  +.               
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~------~~~~~~~~~~--~~---------------  225 (270)
T cd05056         169 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK------NNDVIGRIEN--GE---------------  225 (270)
T ss_pred             CccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHc--CC---------------
Confidence            23457999999988889999999999999999886 999997652      2222221110  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+++.+||.++|++|||+.+++.
T Consensus       226 ------------------------~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~  260 (270)
T cd05056         226 ------------------------RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKA  260 (270)
T ss_pred             ------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                    00122334678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.93  E-value=1.1e-25  Score=200.40  Aligned_cols=173  Identities=22%  Similarity=0.357  Sum_probs=131.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.|++|||+. |++|+||||+||++..                  
T Consensus        76 ~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~i~h~dl~p~ni~i~~------------------  135 (256)
T cd05112          76 LVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESS-NVIHRDLAARNCLVGE------------------  135 (256)
T ss_pred             EEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccccccccceEEEcC------------------
Confidence            589999 889999887643 3478999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       136 ------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05112         136 ------------------------------------------------------NQVVKVSDFGMTRFVLDDQYTSSTGT  161 (256)
T ss_pred             ------------------------------------------------------CCeEEECCCcceeecccCcccccCCC
Confidence                                                                  3468999999885433211    122


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||.+.+..++.++|+||+||++|+|++ |..||....      ....+..+.+.           .      
T Consensus       162 ~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~~-----------~------  218 (256)
T cd05112         162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS------NSEVVETINAG-----------F------  218 (256)
T ss_pred             ccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHhCC-----------C------
Confidence            34568999999998889999999999999999998 999997541      11112111000           0      


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+|+.+||..+|++|||+.|++++
T Consensus       219 ------------------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         219 ------------------------RLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence                                    000112235689999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.2e-25  Score=199.47  Aligned_cols=172  Identities=22%  Similarity=0.384  Sum_probs=130.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.|+.|||++ |++||||+|+||+++                   
T Consensus        69 ~v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~di~p~nili~-------------------  127 (251)
T cd05041          69 IVMELVPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESK-NCIHRDLAARNCLVG-------------------  127 (251)
T ss_pred             EEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CEehhhcCcceEEEc-------------------
Confidence            589999 899999987643 3578899999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc-----c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----E  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~-----~  154 (329)
                                                                           ....++|+|||.+........     .
T Consensus       128 -----------------------------------------------------~~~~~~l~d~g~~~~~~~~~~~~~~~~  154 (251)
T cd05041         128 -----------------------------------------------------ENNVLKISDFGMSREEEGGIYTVSDGL  154 (251)
T ss_pred             -----------------------------------------------------CCCcEEEeeccccccccCCcceecccc
Confidence                                                                 245799999999865432111     1


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...+..|+|||.+.+..++.++|+|||||++|+|++ |..||....      .......+..   .              
T Consensus       155 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~------~~~~~~~~~~---~--------------  211 (251)
T cd05041         155 KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS------NQQTRERIES---G--------------  211 (251)
T ss_pred             CcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC------HHHHHHHHhc---C--------------
Confidence            122456999999988889999999999999999998 888886542      1111111100   0              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              .....+...+..+.+|+.+||+.+|.+|||+.|+++
T Consensus       212 ------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         212 ------------------------YRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             ------------------------CCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                                    001122334668999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.93  E-value=8e-26  Score=227.55  Aligned_cols=114  Identities=21%  Similarity=0.294  Sum_probs=83.1

Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +||+.|+|||++.+..++.++|||||||++|||++|..||.+..      ....+..+..  +.++              
T Consensus       541 vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~------~~~~~~~il~--~~~~--------------  598 (669)
T cd05610         541 LGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDET------PQQVFQNILN--RDIP--------------  598 (669)
T ss_pred             eeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHh--cCCC--------------
Confidence            67899999999999999999999999999999999999997652      2222222211  0000              


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcCCCcc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE  314 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~~~~~  314 (329)
                           +                  ..........+.+++..||..||++|||+.|+++||||....+..-+......+.
T Consensus       599 -----~------------------p~~~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h~~~~~~~~~~~~~~~~~~~~  654 (669)
T cd05610         599 -----W------------------PEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQHPLFHGVDWENLQNQTMPFIP  654 (669)
T ss_pred             -----C------------------CcccccCCHHHHHHHHHHcccChhHCcCHHHHHhCHhhcCCCHHHhcccCCCCCC
Confidence                 0                  0001123457889999999999999999999999999998866555544444443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=1.2e-25  Score=204.23  Aligned_cols=173  Identities=22%  Similarity=0.375  Sum_probs=130.2

Q ss_pred             Cccccc-chhHHHHHHhhc----------------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q 020248            1 MVLEFL-GDSLLRLIKYSR----------------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI   57 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~----------------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Ni   57 (329)
                      +||||+ |++|.+++....                      ...++...+..++.|++.||.|||+. |++||||||+||
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~ivH~dikp~ni  158 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM-KLVHRDLAARNV  158 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC-CeehhhhhhheE
Confidence            579999 899999987532                      12478889999999999999999995 999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCce
Q 020248           58 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  137 (329)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (329)
                      ++.                                                                        ....+
T Consensus       159 ll~------------------------------------------------------------------------~~~~~  166 (290)
T cd05045         159 LVA------------------------------------------------------------------------EGRKM  166 (290)
T ss_pred             EEc------------------------------------------------------------------------CCCcE
Confidence            993                                                                        24578


Q ss_pred             EEeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHH
Q 020248          138 KVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  211 (329)
Q Consensus       138 ~l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~  211 (329)
                      +|+|||.+......     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      ......
T Consensus       167 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~  240 (290)
T cd05045         167 KISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA------PERLFN  240 (290)
T ss_pred             EeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC------HHHHHH
Confidence            99999998543221     112234668999999988889999999999999999998 999996541      111111


Q ss_pred             HHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH
Q 020248          212 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  291 (329)
Q Consensus       212 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el  291 (329)
                      .+.+.                  +                       ....+...+..+.+|+.+||+.+|++||+++|+
T Consensus       241 ~~~~~------------------~-----------------------~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i  279 (290)
T cd05045         241 LLKTG------------------Y-----------------------RMERPENCSEEMYNLMLTCWKQEPDKRPTFADI  279 (290)
T ss_pred             HHhCC------------------C-----------------------CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHH
Confidence            11000                  0                       001122345688999999999999999999999


Q ss_pred             hc
Q 020248          292 LQ  293 (329)
Q Consensus       292 l~  293 (329)
                      ++
T Consensus       280 ~~  281 (290)
T cd05045         280 SK  281 (290)
T ss_pred             HH
Confidence            75

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.93  E-value=1.3e-25  Score=201.44  Aligned_cols=176  Identities=24%  Similarity=0.353  Sum_probs=126.7

Q ss_pred             Cccccc-chhHHHHHHhhcC---CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||+ |++|.+++.....   ...+...+..++.||+.||+|||+. ||+||||||+||++.                
T Consensus        72 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nill~----------------  134 (269)
T cd05042          72 LVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA-DFIHSDLALRNCQLT----------------  134 (269)
T ss_pred             EEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc-CEecccccHhheEec----------------
Confidence            589999 8899999987532   2246778899999999999999995 999999999999993                


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----c
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----Q  151 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~  151 (329)
                                                                              ....++|+|||.+.....     .
T Consensus       135 --------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042         135 --------------------------------------------------------ADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             --------------------------------------------------------CCCcEEEeccccccccccchheec
Confidence                                                                    245789999998854221     1


Q ss_pred             cccCCCCCCCcchHHhhc-------CCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC-CcH
Q 020248          152 FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK-MPR  222 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~-------~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~-~p~  222 (329)
                      .....++..|+|||++..       ..++.++|||||||++|+|++ |..||...      .+...+..+...... +|.
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~  232 (269)
T cd05042         159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDL------SDEQVLKQVVREQDIKLPK  232 (269)
T ss_pred             cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcC------CHHHHHHHHhhccCccCCC
Confidence            122334667999999753       357889999999999999998 78888654      223333322211100 000


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                           ...+...+..+.++++.|+ .||++|||++|+++
T Consensus       233 -------------------------------------~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         233 -------------------------------------PQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             -------------------------------------CcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence                                                 0012233567788899898 49999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.93  E-value=1.5e-25  Score=200.90  Aligned_cols=172  Identities=18%  Similarity=0.336  Sum_probs=131.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.|++.|++|||+. |++|+||||+||+++.                  
T Consensus        83 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~-~i~H~dlkp~Nili~~------------------  142 (268)
T cd05063          83 IITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDM-NYVHRDLAARNILVNS------------------  142 (268)
T ss_pred             EEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccccchhhEEEcC------------------
Confidence            589999 789999987643 4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA------  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~------  153 (329)
                                                                            ...++|+|||.+........      
T Consensus       143 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  168 (268)
T cd05063         143 ------------------------------------------------------NLECKVSDFGLSRVLEDDPEGTYTTS  168 (268)
T ss_pred             ------------------------------------------------------CCcEEECCCccceecccccccceecc
Confidence                                                                  45689999998854432111      


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....+..|+|||.+....++.++|+|||||++|++++ |..||...      ........+... ...            
T Consensus       169 ~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~------~~~~~~~~i~~~-~~~------------  229 (268)
T cd05063         169 GGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM------SNHEVMKAINDG-FRL------------  229 (268)
T ss_pred             CCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC------CHHHHHHHHhcC-CCC------------
Confidence            1112446999999988889999999999999999987 99999654      222222222210 010            


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                  +.+...+..+.+|+.+||+.+|++||++.++++
T Consensus       230 ----------------------------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         230 ----------------------------PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             ----------------------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                        011223567899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-26  Score=222.45  Aligned_cols=172  Identities=20%  Similarity=0.375  Sum_probs=141.9

Q ss_pred             Cccccc-chhHHHHHHhhc--------CCC----cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------YKG----LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK   67 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------~~~----l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~   67 (329)
                      |||||| -++|..|+....        +..    |+..+..+|+.||+.||.||-+ ..++||||...|+|+        
T Consensus       566 MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~-~~FVHRDLATRNCLV--------  636 (774)
T KOG1026|consen  566 MVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSS-HHFVHRDLATRNCLV--------  636 (774)
T ss_pred             EEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh-Ccccccchhhhhcee--------
Confidence            689999 789999998652        122    8888999999999999999999 499999999999999        


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc
Q 020248           68 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  147 (329)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~  147 (329)
                                                                                      +....|||+|||+++.
T Consensus       637 ----------------------------------------------------------------ge~l~VKIsDfGLsRd  652 (774)
T KOG1026|consen  637 ----------------------------------------------------------------GENLVVKISDFGLSRD  652 (774)
T ss_pred             ----------------------------------------------------------------ccceEEEecccccchh
Confidence                                                                            4467899999999954


Q ss_pred             cccccccCC-----CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          148 ANKQFAEEI-----QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       148 ~~~~~~~~~-----~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                      .-.....++     -+..|||||.+...+||.+|||||+||++||+++ |..||.+.      .+.+++..|..      
T Consensus       653 iYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl------Sn~EVIe~i~~------  720 (774)
T KOG1026|consen  653 IYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL------SNQEVIECIRA------  720 (774)
T ss_pred             hhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccccc------chHHHHHHHHc------
Confidence            433222222     2678999999999999999999999999999977 89999887      45666665531      


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  292 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell  292 (329)
                                                         .+....+..++.++.+||+.||+.+|++|||++||-
T Consensus       721 -----------------------------------g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~  756 (774)
T KOG1026|consen  721 -----------------------------------GQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIH  756 (774)
T ss_pred             -----------------------------------CCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHH
Confidence                                               111345788899999999999999999999999974

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.93  E-value=2e-25  Score=204.28  Aligned_cols=173  Identities=20%  Similarity=0.311  Sum_probs=130.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.|++.||.|||++ ||+|+||||+||++..                  
T Consensus        85 ~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~dikp~Nill~~------------------  144 (303)
T cd05110          85 LVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEER-RLVHRDLAARNVLVKS------------------  144 (303)
T ss_pred             eeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhc-CeeccccccceeeecC------------------
Confidence            578999 789999987653 3488899999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                            ...++|+|||.+......     ...
T Consensus       145 ------------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~  170 (303)
T cd05110         145 ------------------------------------------------------PNHVKITDFGLARLLEGDEKEYNADG  170 (303)
T ss_pred             ------------------------------------------------------CCceEEccccccccccCcccccccCC
Confidence                                                                  346899999998654321     112


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+.+..++.++|||||||++|++++ |..||.+..       ...+..+......+             
T Consensus       171 ~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~-------------  230 (303)
T cd05110         171 GKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP-------TREIPDLLEKGERL-------------  230 (303)
T ss_pred             CccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHCCCCC-------------
Confidence            234568999999998889999999999999999987 889886541       11122111100000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                 ..+...+..+.+++.+||..+|++||+++++++.
T Consensus       231 ---------------------------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         231 ---------------------------PQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             ---------------------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                       0112234578899999999999999999998774

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.93  E-value=1.6e-25  Score=203.01  Aligned_cols=173  Identities=18%  Similarity=0.331  Sum_probs=129.6

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      +||||+ |++|.+++.....                    ..++...+..++.|++.||.|||++ |++||||||+||++
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~-~i~H~dl~p~nil~  163 (288)
T cd05050          85 LLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER-KFVHRDLATRNCLV  163 (288)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-CeecccccHhheEe
Confidence            589999 7899999975321                    2367888999999999999999995 99999999999999


Q ss_pred             ecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEE
Q 020248           60 VSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV  139 (329)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  139 (329)
                      .                                                                        ....++|
T Consensus       164 ~------------------------------------------------------------------------~~~~~~l  171 (288)
T cd05050         164 G------------------------------------------------------------------------ENMVVKI  171 (288)
T ss_pred             c------------------------------------------------------------------------CCCceEE
Confidence            3                                                                        2457899


Q ss_pred             eecCcccccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHH
Q 020248          140 VDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALM  213 (329)
Q Consensus       140 ~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i  213 (329)
                      +|||.+......     ......+..|+|||.+.+..++.++|+|||||++|+|++ |..||.+..      .......+
T Consensus       172 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~------~~~~~~~~  245 (288)
T cd05050         172 ADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA------HEEVIYYV  245 (288)
T ss_pred             CccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHH
Confidence            999988543221     112234567999999998899999999999999999997 888886542      12211111


Q ss_pred             HHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          214 MELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       214 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      ..  +..                                       ...+...+..+.+||.+||+.||++|||+.|+++
T Consensus       246 ~~--~~~---------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         246 RD--GNV---------------------------------------LSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             hc--CCC---------------------------------------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            00  000                                       0012234568999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.93  E-value=4.1e-27  Score=218.17  Aligned_cols=185  Identities=30%  Similarity=0.415  Sum_probs=144.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||.|.++....+.....+.|++...+.+..||+.||.|||.+ +|+|+||||+|||+...                  
T Consensus       640 VVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k-nIvHCDLKPENVLLas~------------------  700 (888)
T KOG4236|consen  640 VVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK-NIVHCDLKPENVLLASA------------------  700 (888)
T ss_pred             EEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-ceeeccCCchheeeccC------------------
Confidence            48999944544444444446799999999999999999999996 99999999999999442                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~~  158 (329)
                                                                         +.-.++||+|||+|+...+.  ..+.+||
T Consensus       701 ---------------------------------------------------~~FPQvKlCDFGfARiIgEksFRrsVVGT  729 (888)
T KOG4236|consen  701 ---------------------------------------------------SPFPQVKLCDFGFARIIGEKSFRRSVVGT  729 (888)
T ss_pred             ---------------------------------------------------CCCCceeeccccceeecchhhhhhhhcCC
Confidence                                                               33568999999999766543  3456899


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      ++|+|||++....|....|+||+|+|+|.-+.|.+||....        ++-..|.. -               .+    
T Consensus       730 PAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdE--------dIndQIQN-A---------------aF----  781 (888)
T KOG4236|consen  730 PAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDE--------DINDQIQN-A---------------AF----  781 (888)
T ss_pred             ccccCHHHHhhccccccccceeeeEEEEEEecccccCCCcc--------chhHHhhc-c---------------cc----
Confidence            99999999999999999999999999999999999997542        11111110 0               00    


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                        ..+..-..+.+..++|||..+|+..=++|-|++..+.|||+++..
T Consensus       782 ------------------MyPp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  782 ------------------MYPPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             ------------------ccCCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence                              000011234467899999999999999999999999999998753

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.93  E-value=1.3e-25  Score=208.35  Aligned_cols=174  Identities=22%  Similarity=0.381  Sum_probs=131.5

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ +++|.+++....              ...++...+..++.|++.||.|||++ |++||||||+||+++.    
T Consensus        95 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~-givH~dlkp~Nill~~----  169 (334)
T cd05100          95 VLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ-KCIHRDLAARNVLVTE----  169 (334)
T ss_pred             EEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC-CeeccccccceEEEcC----
Confidence            579999 889999987632              12377888999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       170 --------------------------------------------------------------------~~~~kL~Dfg~~  181 (334)
T cd05100         170 --------------------------------------------------------------------DNVMKIADFGLA  181 (334)
T ss_pred             --------------------------------------------------------------------CCcEEECCcccc
Confidence                                                                                457899999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....++..|+|||++.+..++.++|||||||++|+|++ |..||....      .......+..   .
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~---~  252 (334)
T cd05100         182 RDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLKE---G  252 (334)
T ss_pred             eecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc---C
Confidence            544321     112233457999999999899999999999999999998 888887642      1221111110   0


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            .....+...+..+.+|+++||+.+|++|||+.|++++
T Consensus       253 --------------------------------------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         253 --------------------------------------HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             --------------------------------------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                                                  0001122335688999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.93  E-value=1.5e-25  Score=212.86  Aligned_cols=154  Identities=22%  Similarity=0.367  Sum_probs=115.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHH
Q 020248           21 GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKL  100 (329)
Q Consensus        21 ~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (329)
                      .++...+..++.||+.||.|||+. |++|+||||+||++..                                       
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH~~-~ivH~dikp~Nill~~---------------------------------------  272 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLASK-NCVHRDLAARNVLLAQ---------------------------------------  272 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChHhEEEeC---------------------------------------
Confidence            477888899999999999999995 9999999999999932                                       


Q ss_pred             HHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCcc
Q 020248          101 KRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFS  175 (329)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~  175 (329)
                                                       ...++|+|||.+.....     ......++..|+|||.+.+..++.+
T Consensus       273 ---------------------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  319 (400)
T cd05105         273 ---------------------------------GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTL  319 (400)
T ss_pred             ---------------------------------CCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCch
Confidence                                             34689999999854332     1122345678999999998889999


Q ss_pred             chHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhH
Q 020248          176 VDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDR  254 (329)
Q Consensus       176 ~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +|||||||++|+|++ |..||....     .+......+..  +.                                   
T Consensus       320 ~DiwSlGvil~ellt~g~~P~~~~~-----~~~~~~~~~~~--~~-----------------------------------  357 (400)
T cd05105         320 SDVWSYGILLWEIFSLGGTPYPGMI-----VDSTFYNKIKS--GY-----------------------------------  357 (400)
T ss_pred             hhHHHHHHHHHHHHHCCCCCCcccc-----hhHHHHHHHhc--CC-----------------------------------
Confidence            999999999999986 999987541     01111111100  00                                   


Q ss_pred             HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          255 LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       255 ~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                          ....+...+..+.+++.+||..||++|||+.++.+
T Consensus       358 ----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         358 ----RMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             ----CCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence                00112234668899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.93  E-value=2.9e-25  Score=198.53  Aligned_cols=175  Identities=23%  Similarity=0.359  Sum_probs=131.9

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.|++.||.|||+ .|++||||+|+||+++                 
T Consensus        79 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~-~~i~h~dl~p~nil~~-----------------  140 (267)
T cd08224          79 IVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHS-KRIMHRDIKPANVFIT-----------------  140 (267)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHh-CCEecCCcChhhEEEC-----------------
Confidence            589999 889999887532  2448899999999999999999999 4999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                             ....++|+|||.+......   ...
T Consensus       141 -------------------------------------------------------~~~~~~l~d~~~~~~~~~~~~~~~~  165 (267)
T cd08224         141 -------------------------------------------------------ATGVVKLGDLGLGRFFSSKTTAAHS  165 (267)
T ss_pred             -------------------------------------------------------CCCcEEEeccceeeeccCCCcccce
Confidence                                                                   2457899999988544322   223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..++..|+|||.+.+..++.++|+||+||++|+|++|..||.....    ........+..  +..              
T Consensus       166 ~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~--~~~--------------  225 (267)
T cd08224         166 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM----NLYSLCKKIEK--CDY--------------  225 (267)
T ss_pred             ecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCc----cHHHHHhhhhc--CCC--------------
Confidence            4577889999999988899999999999999999999999965310    00000000000  000              


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCC-hhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFS-ETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               .+.+ ...+..+.++|.+||..+|++|||+.+|++
T Consensus       226 -------------------------~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         226 -------------------------PPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             -------------------------CCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                                     0011 133568899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=2e-25  Score=203.25  Aligned_cols=180  Identities=18%  Similarity=0.287  Sum_probs=130.1

Q ss_pred             Cccccc-chhHHHHHHhhcC----------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDP   69 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~   69 (329)
                      +||||+ |++|.+++.....          ..++...+..++.|++.||.|||+. |++|+||||+||+++.        
T Consensus        94 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~-~i~H~dlkp~Nill~~--------  164 (295)
T cd05097          94 MITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL-NFVHRDLATRNCLVGN--------  164 (295)
T ss_pred             EEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc-CeeccccChhhEEEcC--------
Confidence            589999 8999999865321          1367888999999999999999995 9999999999999932        


Q ss_pred             CCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc
Q 020248           70 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  149 (329)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~  149 (329)
                                                                                      ...++|+|||.+....
T Consensus       165 ----------------------------------------------------------------~~~~kl~dfg~~~~~~  180 (295)
T cd05097         165 ----------------------------------------------------------------HYTIKIADFGMSRNLY  180 (295)
T ss_pred             ----------------------------------------------------------------CCcEEecccccccccc
Confidence                                                                            3468999999885432


Q ss_pred             cc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh--CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          150 KQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       150 ~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ..     .....++..|+|||.+.+..++.++|+|||||++|+|++  |..||...      .....+..+.+.....  
T Consensus       181 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~------~~~~~~~~~~~~~~~~--  252 (295)
T cd05097         181 SGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLL------SDEQVIENTGEFFRNQ--  252 (295)
T ss_pred             cCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCccc------ChHHHHHHHHHhhhhc--
Confidence            11     112234668999999998889999999999999999988  56677654      2222222222211000  


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                      +..                .....+...+..+.+|+++||.+||++|||++++++
T Consensus       253 ----------------~~~----------------~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         253 ----------------GRQ----------------IYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             ----------------ccc----------------ccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                            000                000012223568999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.93  E-value=3.2e-25  Score=201.99  Aligned_cols=180  Identities=19%  Similarity=0.307  Sum_probs=130.1

Q ss_pred             Cccccc-chhHHHHHHhhcC---------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI   70 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~   70 (329)
                      +||||+ |++|.+++.....         ..++...+..++.|++.||+|||+. |++|+||||+||+++          
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dlkp~Nili~----------  164 (296)
T cd05095          96 MITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL-NFVHRDLATRNCLVG----------  164 (296)
T ss_pred             EEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC-CeecccCChheEEEc----------
Confidence            589999 8899999876421         2366788999999999999999995 999999999999993          


Q ss_pred             CCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc
Q 020248           71 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  150 (329)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~  150 (329)
                                                                                    ....++|+|||.+.....
T Consensus       165 --------------------------------------------------------------~~~~~~l~dfg~~~~~~~  182 (296)
T cd05095         165 --------------------------------------------------------------KNYTIKIADFGMSRNLYS  182 (296)
T ss_pred             --------------------------------------------------------------CCCCEEeccCcccccccC
Confidence                                                                          245789999999854322


Q ss_pred             c-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh--CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHH
Q 020248          151 Q-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       151 ~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~  223 (329)
                      .     .....++..|++||...+..++.++|+|||||++|+|++  |..||....      ....+....+.       
T Consensus       183 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~-------  249 (296)
T cd05095         183 GDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS------DEQVIENTGEF-------  249 (296)
T ss_pred             CcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC------hHHHHHHHHHH-------
Confidence            1     111233567999999988889999999999999999998  678886542      11211111110       


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                 +...+.                ....+.+..++..+.+|+.+||+.||.+|||+.|+++
T Consensus       250 -----------~~~~~~----------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         250 -----------FRDQGR----------------QVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             -----------Hhhccc----------------cccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                       000000                0000112234578999999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.93  E-value=2.4e-25  Score=199.64  Aligned_cols=176  Identities=22%  Similarity=0.381  Sum_probs=133.1

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ....++...+..++.|++.||.|||+..|++|+||+|+||++.                 
T Consensus        86 lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~-----------------  148 (269)
T cd08528          86 IVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLG-----------------  148 (269)
T ss_pred             EEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEEC-----------------
Confidence            589999 88999887542  2245899999999999999999999633899999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEE  155 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~  155 (329)
                                                                             ....++|+|||.+......  ....
T Consensus       149 -------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~  173 (269)
T cd08528         149 -------------------------------------------------------EDDKVTITDFGLAKQKQPESKLTSV  173 (269)
T ss_pred             -------------------------------------------------------CCCcEEEecccceeecccccccccc
Confidence                                                                   3457899999998654432  2344


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .++..|+|||.+.+..++.++|+|||||++|+|++|..||...      +.......+.+....                
T Consensus       174 ~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~------~~~~~~~~~~~~~~~----------------  231 (269)
T cd08528         174 VGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST------NMLSLATKIVEAVYE----------------  231 (269)
T ss_pred             cCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc------CHHHHHHHHhhccCC----------------
Confidence            6788899999999888999999999999999999999999643      111111111100000                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              .......+..+.+||++||+.||++|||+.|+.++
T Consensus       232 ------------------------~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         232 ------------------------PLPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             ------------------------cCCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence                                    00011235678999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-25  Score=226.66  Aligned_cols=173  Identities=21%  Similarity=0.426  Sum_probs=140.2

Q ss_pred             Cccccc-chhHHHHHHhhc-----CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR-----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-----~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +++||| |++|.+|+....     ...++..+...++.+|+.|+.||+++ ++|||||...|+|+               
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~-~fvHRDLAaRNCLL---------------  835 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK-HFVHRDLAARNCLL---------------  835 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC-CCcCcchhhhheee---------------
Confidence            589999 999999999872     23588999999999999999999995 99999999999999               


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc-ccccc
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA-NKQFA  153 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~-~~~~~  153 (329)
                                                                               +....||++|||+|.-. ....+
T Consensus       836 ---------------------------------------------------------~~~r~VKIaDFGlArDiy~~~yy  858 (1025)
T KOG1095|consen  836 ---------------------------------------------------------DERRVVKIADFGLARDIYDKDYY  858 (1025)
T ss_pred             ---------------------------------------------------------cccCcEEEcccchhHhhhhchhe
Confidence                                                                     33568999999999622 22222


Q ss_pred             cC----CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          154 EE----IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       154 ~~----~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      ..    .-+..|||||.+....++.++|||||||++||+++ |..||...      ++.+++.... ..|          
T Consensus       859 r~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~------~n~~v~~~~~-~gg----------  921 (1025)
T KOG1095|consen  859 RKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSR------SNFEVLLDVL-EGG----------  921 (1025)
T ss_pred             eccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCc------chHHHHHHHH-hCC----------
Confidence            22    23568999999999999999999999999999987 99999876      3444433222 112          


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                    +.+-+..++..+.++|.+||+.+|++||++..|++
T Consensus       922 ------------------------------RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  922 ------------------------------RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ------------------------------ccCCCCCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence                                          22346677889999999999999999999999987

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.93  E-value=3e-25  Score=206.78  Aligned_cols=154  Identities=26%  Similarity=0.411  Sum_probs=114.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHH
Q 020248           22 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLK  101 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (329)
                      ++...+..++.|++.||+|||++ |++||||||+||++.                                         
T Consensus       176 ~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~~-----------------------------------------  213 (343)
T cd05103         176 LTLEDLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS-----------------------------------------  213 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC-CeecCCCccCeEEEc-----------------------------------------
Confidence            67778889999999999999995 999999999999993                                         


Q ss_pred             HHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCccc
Q 020248          102 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSV  176 (329)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~  176 (329)
                                                     ....++|+|||.+......     .....++..|+|||.+.+..++.++
T Consensus       214 -------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  262 (343)
T cd05103         214 -------------------------------ENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS  262 (343)
T ss_pred             -------------------------------CCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchh
Confidence                                           2457899999998543211     1112345679999999988899999


Q ss_pred             hHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHH
Q 020248          177 DMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL  255 (329)
Q Consensus       177 DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (329)
                      |+|||||++|++++ |..||....     ........+..  |.                                    
T Consensus       263 Di~slG~~l~el~~~g~~p~~~~~-----~~~~~~~~~~~--~~------------------------------------  299 (343)
T cd05103         263 DVWSFGVLLWEIFSLGASPYPGVK-----IDEEFCRRLKE--GT------------------------------------  299 (343)
T ss_pred             hHHHHHHHHHHHHHCCCCCCCCcc-----ccHHHHHHHhc--cC------------------------------------
Confidence            99999999999996 999986542     11111111100  00                                    


Q ss_pred             HhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       256 ~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                         ....+...+..+.+++.+||+.||++|||+.||++|
T Consensus       300 ---~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         300 ---RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             ---CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence               000111224578999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.93  E-value=3e-25  Score=199.25  Aligned_cols=177  Identities=24%  Similarity=0.343  Sum_probs=125.5

Q ss_pred             Cccccc-chhHHHHHHhhcC---CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||+ |++|.+++.....   ..++...+..++.|++.|++|||++ |++|+||||+||++.                
T Consensus        72 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dlkp~nil~~----------------  134 (269)
T cd05087          72 LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN-NFIHSDLALRNCLLT----------------  134 (269)
T ss_pred             EEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CEeccccCcceEEEc----------------
Confidence            589999 8999999976431   2356678889999999999999995 999999999999993                


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  151 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----  151 (329)
                                                                              ....++|+|||.+......     
T Consensus       135 --------------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~  158 (269)
T cd05087         135 --------------------------------------------------------ADLTVKIGDYGLSHNKYKEDYYVT  158 (269)
T ss_pred             --------------------------------------------------------CCCcEEECCccccccccCcceeec
Confidence                                                                    2356899999988543221     


Q ss_pred             cccCCCCCCCcchHHhhcC-------CCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHH
Q 020248          152 FAEEIQTRQYRAPEVILRA-------GYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~-------~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~  223 (329)
                      .....++..|+|||++.+.       .++.++|+||+||++|+|++ |..||....      ..........  +...  
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~~~--  228 (269)
T cd05087         159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS------DEQVLTYTVR--EQQL--  228 (269)
T ss_pred             CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHHhh--cccC--
Confidence            1223456789999998642       35789999999999999996 999997542      2221111110  0000  


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                               .+                       ............+.++|++|+ .+|++|||++||+.
T Consensus       229 ---------~~-----------------------~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         229 ---------KL-----------------------PKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             ---------CC-----------------------CCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence                     00                       000011123557889999998 58999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.93  E-value=2.6e-25  Score=199.49  Aligned_cols=172  Identities=21%  Similarity=0.365  Sum_probs=131.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.|++|||+. |++|+||||+||++.                   
T Consensus        82 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~h~dlkp~nili~-------------------  140 (267)
T cd05066          82 IVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILVN-------------------  140 (267)
T ss_pred             EEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeehhhchhcEEEC-------------------
Confidence            589999 889999998653 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       141 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  167 (267)
T cd05066         141 -----------------------------------------------------SNLVCKVSDFGLSRVLEDDPEAAYTTR  167 (267)
T ss_pred             -----------------------------------------------------CCCeEEeCCCCcccccccccceeeecC
Confidence                                                                 24578999999885443211      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||....      .......+.+..               
T Consensus       168 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~------~~~~~~~~~~~~---------------  226 (267)
T cd05066         168 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS------NQDVIKAIEEGY---------------  226 (267)
T ss_pred             CCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC------HHHHHHHHhCCC---------------
Confidence            1122457999999998889999999999999999886 999997642      112222111100               


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ..+.+...+..+.+++.+||+.+|++|||+.++++
T Consensus       227 --------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         227 --------------------------RLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             --------------------------cCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence                                      00112233568899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.93  E-value=2.8e-25  Score=199.86  Aligned_cols=175  Identities=23%  Similarity=0.405  Sum_probs=132.2

Q ss_pred             Cccccc-chhHHHHHHhhcCC-------CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYK-------GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~-------~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      +||||+ |++|.+++......       .++...+..++.||+.||.|||+. |++|+||||+||++..           
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~-~i~H~dlkp~Nili~~-----------  152 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA-RFVHRDLAARNCLVSS-----------  152 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc-CcccCcCccceEEEeC-----------
Confidence            589999 89999999865411       489999999999999999999995 9999999999999933           


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  150 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--  150 (329)
                                                                                   ...++++|||++.....  
T Consensus       153 -------------------------------------------------------------~~~~~l~~~~~~~~~~~~~  171 (275)
T cd05046         153 -------------------------------------------------------------QREVKVSLLSLSKDVYNSE  171 (275)
T ss_pred             -------------------------------------------------------------CCcEEEcccccccccCccc
Confidence                                                                         34688999998743321  


Q ss_pred             --ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          151 --QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       151 --~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                        ......++..|+|||.+.+..++.++|+|||||++|++++ |..||....      +...+..+..  +..       
T Consensus       172 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~------~~~~~~~~~~--~~~-------  236 (275)
T cd05046         172 YYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS------DEEVLNRLQA--GKL-------  236 (275)
T ss_pred             ccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc------hHHHHHHHHc--CCc-------
Confidence              1122344667999999988888999999999999999998 888886541      2222221110  000       


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                     ....+...+..+.+++.+||+.+|++|||+.|++++
T Consensus       237 -------------------------------~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         237 -------------------------------ELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             -------------------------------CCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence                                           001122346789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=3.3e-25  Score=200.43  Aligned_cols=186  Identities=24%  Similarity=0.360  Sum_probs=130.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ |++||||||+||++.                   
T Consensus        84 lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~-~i~H~dlkp~nili~-------------------  142 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSK-RYVHRDLATRNILVE-------------------  142 (284)
T ss_pred             EEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHhhEEEC-------------------
Confidence            589999 899999987643 3488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       143 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  169 (284)
T cd05081         143 -----------------------------------------------------SENRVKIGDFGLTKVLPQDKEYYKVRE  169 (284)
T ss_pred             -----------------------------------------------------CCCeEEECCCcccccccCCCcceeecC
Confidence                                                                 24578999999986543211      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..++....       ..    ..+..+....           
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~-------~~----~~~~~~~~~~-----------  227 (284)
T cd05081         170 PGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPP-------AE----FMRMMGNDKQ-----------  227 (284)
T ss_pred             CCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcc-------hh----hhhhcccccc-----------
Confidence            1123446999999998889999999999999999999877664331       00    0111111000           


Q ss_pred             ccCccCchhhhccccccchhHHHhhh--cCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDK--YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                           +..      ......+.+...  .+.+...+..+.+|+.+||..+|++|||+.|+++
T Consensus       228 -----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         228 -----GQM------IVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             -----ccc------chHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                 000      000000111111  1122344678999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.93  E-value=2.5e-25  Score=201.81  Aligned_cols=267  Identities=21%  Similarity=0.339  Sum_probs=157.6

Q ss_pred             Ccccccc-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||++ ....++...     ++...++.+++.++.||.++|+. |||||||||+|++++...... ...+.++     
T Consensus       112 ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~-GIvHRDiKpsNFL~n~~t~rg-~LvDFgL-----  179 (418)
T KOG1167|consen  112 IVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKN-GIVHRDIKPSNFLYNRRTQRG-VLVDFGL-----  179 (418)
T ss_pred             EEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhcc-CccccCCCccccccccccCCc-eEEechh-----
Confidence            4788884 455555554     78999999999999999999995 999999999999996542111 0111111     


Q ss_pred             CCCCCCCCCCCchhHHHHHHH-HHH-hhhhccchhhcccc-cCCccCCCCCccCCCCCCceEEeecCcccccccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKL-KRR-AKRAVANISIRRAS-MGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~  156 (329)
                                       .+.. +++ .+..-.......+. +|........-..+.....++-+.-    ..........
T Consensus       180 -----------------A~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~----~r~~~~anrA  238 (418)
T KOG1167|consen  180 -----------------AQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCND----GRPSERANRA  238 (418)
T ss_pred             -----------------HHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCC----CccceecccC
Confidence                             1101 111 01111100001111 1111110000000000000110000    1112345668


Q ss_pred             CCCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc--
Q 020248          157 QTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD--  233 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--  233 (329)
                      ||++|+|||+++.++ .+.++||||.|+|+..++++.+||....     ++.+.+..|+.++|.-  ++.+.....+.  
T Consensus       239 GT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~-----dd~~al~ei~tifG~~--~mrk~A~l~g~~~  311 (418)
T KOG1167|consen  239 GTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAK-----DDADALAEIATIFGSA--EMRKCAALPGRIL  311 (418)
T ss_pred             CCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCc-----cccchHHHHHHHhChH--HHHHHhhcCCcee
Confidence            999999999999985 7899999999999999999999998775     6788999999999973  33332222222  


Q ss_pred             ccCccC--chhhhccccccch--hHHH------hhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          234 YFDRHG--DLKRIRRLKFWSL--DRLL------VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       234 ~~~~~~--~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ++....  ..... ...+.++  +.+.      .......+..+..+.||+.+||..||.+|+||+|+|.||||......
T Consensus       312 l~~ksn~~~~~e~-~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~~~  390 (418)
T KOG1167|consen  312 LWQKSNIPTIPEL-RVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDEADRT  390 (418)
T ss_pred             eeccccccccHHH-HhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcchhhh
Confidence            222111  00000 0000011  1111      11223445566789999999999999999999999999999976655


Q ss_pred             hhhhh
Q 020248          304 RDETK  308 (329)
Q Consensus       304 ~~~~~  308 (329)
                      .....
T Consensus       391 ~~~~~  395 (418)
T KOG1167|consen  391 ERGLQ  395 (418)
T ss_pred             hhhhH
Confidence            54444

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.93  E-value=3.2e-25  Score=200.15  Aligned_cols=173  Identities=21%  Similarity=0.350  Sum_probs=130.6

Q ss_pred             Cccccc-chhHHHHHHhhcC------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      +++||+ +++|.+++.....      ..++...+..++.|++.||+|||+. +++|+||||+||++..            
T Consensus        86 ~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-~i~H~di~p~nil~~~------------  152 (280)
T cd05043          86 VLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR-GVIHKDIAARNCVIDE------------  152 (280)
T ss_pred             EEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCHhhEEEcC------------
Confidence            467888 7899999876532      3488999999999999999999995 9999999999999932            


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--  151 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--  151 (329)
                                                                                  ...++|+|||.+......  
T Consensus       153 ------------------------------------------------------------~~~~kl~d~g~~~~~~~~~~  172 (280)
T cd05043         153 ------------------------------------------------------------ELQVKITDNALSRDLFPMDY  172 (280)
T ss_pred             ------------------------------------------------------------CCcEEECCCCCcccccCCce
Confidence                                                                        357899999998644221  


Q ss_pred             ---cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          152 ---FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       152 ---~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                         .....++..|+|||.+.+..++.++|||||||++|++++ |..||....      .......+.   ...       
T Consensus       173 ~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~---~~~-------  236 (280)
T cd05043         173 HCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID------PFEMAAYLK---DGY-------  236 (280)
T ss_pred             EEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC------HHHHHHHHH---cCC-------
Confidence               112234567999999998889999999999999999998 999997541      111111110   000       


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                     ....+...+..+.+++.+||..||++|||+.|+++
T Consensus       237 -------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         237 -------------------------------RLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             -------------------------------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                           00011223567899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=4.6e-25  Score=199.13  Aligned_cols=172  Identities=22%  Similarity=0.329  Sum_probs=131.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ +++|.+++.... ..++...+..++.|++.||+|||+ .|++|+||||+||++.                   
T Consensus        85 ~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~-~~i~H~di~p~nil~~-------------------  143 (279)
T cd05057          85 LITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEE-KRLVHRDLAARNVLVK-------------------  143 (279)
T ss_pred             EEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHh-CCEEecccCcceEEEc-------------------
Confidence            589999 899999988753 348999999999999999999999 4999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc-----c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----E  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~-----~  154 (329)
                                                                           ....++|+|||.+........     .
T Consensus       144 -----------------------------------------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~  170 (279)
T cd05057         144 -----------------------------------------------------TPQHVKITDFGLAKLLDVDEKEYHAEG  170 (279)
T ss_pred             -----------------------------------------------------CCCeEEECCCcccccccCcccceecCC
Confidence                                                                 244689999999865432111     1


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||.+....++.++|+||+||++|++++ |..||....       ...+........               
T Consensus       171 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~---------------  228 (279)
T cd05057         171 GKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP-------AVEIPDLLEKGE---------------  228 (279)
T ss_pred             CcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC-------HHHHHHHHhCCC---------------
Confidence            122457999999988889999999999999999998 999997642       111111111000               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ....+..++..+.+++.+||..||.+|||+.++++
T Consensus       229 -------------------------~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         229 -------------------------RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             -------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                     00112234567889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.93  E-value=4.6e-25  Score=198.18  Aligned_cols=177  Identities=22%  Similarity=0.359  Sum_probs=125.5

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.....  ..++...+..++.||+.||.|||+. +++|+||||+||++..                
T Consensus        72 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~-~i~H~dikp~nil~~~----------------  134 (268)
T cd05086          72 LVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH-NFLHSDLALRNCFLTS----------------  134 (268)
T ss_pred             EEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC-CeeccCCccceEEEcC----------------
Confidence            589999 8999999986421  3366778889999999999999995 9999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QF  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~  152 (329)
                                                                              ...++|+|||.+.....     ..
T Consensus       135 --------------------------------------------------------~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086         135 --------------------------------------------------------DLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             --------------------------------------------------------CccEEecccccccccCcchhhhcc
Confidence                                                                    35699999998743211     12


Q ss_pred             ccCCCCCCCcchHHhhc-------CCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          153 AEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~-------~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      ....++..|+|||++..       ..++.++|||||||++|+|++ |..||...      .+...+..+..  +...   
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~------~~~~~~~~~~~--~~~~---  227 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHL------SDREVLNHVIK--DQQV---  227 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHh--hccc---
Confidence            33456788999998753       246789999999999999986 57777654      22222222211  0000   


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                              ..+                       ...........+.++++.|| .+|++|||+.|+++
T Consensus       228 --------~~~-----------------------~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         228 --------KLF-----------------------KPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             --------ccC-----------------------CCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence                    000                       00011223567788999999 68999999999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.93  E-value=6.5e-25  Score=192.16  Aligned_cols=178  Identities=38%  Similarity=0.566  Sum_probs=138.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ +++|.+++.....  ++...+..++.+++.++.+||+. |++|+||+|.||++..                  
T Consensus        64 l~~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~l~~~l~~lh~~-~i~h~~i~~~ni~~~~------------------  122 (244)
T smart00220       64 LVMEYCDGGDLFDLLKKRGR--LSEDEARFYARQILSALEYLHSN-GIIHRDLKPENILLDE------------------  122 (244)
T ss_pred             EEEeCCCCCCHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHc-CeecCCcCHHHeEECC------------------
Confidence            579999 5599999887543  88999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                            ...++++|||.+.....  ......+
T Consensus       123 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  148 (244)
T smart00220      123 ------------------------------------------------------DGHVKLADFGLARQLDPGGLLTTFVG  148 (244)
T ss_pred             ------------------------------------------------------CCcEEEccccceeeeccccccccccC
Confidence                                                                  35789999999866554  3345567


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +..|++||.+.+..++.++|+||+|+++|++++|..||....      +...   +.+.+.......             
T Consensus       149 ~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~------~~~~---~~~~~~~~~~~~-------------  206 (244)
T smart00220      149 TPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDD------QLLE---LFKKIGKPKPPF-------------  206 (244)
T ss_pred             CcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------cHHH---HHHHHhccCCCC-------------
Confidence            889999999998889999999999999999999999996531      1111   111111100000             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                            .......+..+.+++.+||..+|++||++.++++||||
T Consensus       207 ----------------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      207 ----------------------PPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             ----------------------ccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence                                  00000035688999999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.92  E-value=6.9e-26  Score=220.72  Aligned_cols=183  Identities=30%  Similarity=0.495  Sum_probs=148.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |+|.-|+++...+..+.++.+.+|++-++.|+.+||.. .++|||||..|||++.                  
T Consensus        98 LVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n-kviHRDikG~NiLLT~------------------  158 (953)
T KOG0587|consen   98 LVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN-KVIHRDIKGQNVLLTE------------------  158 (953)
T ss_pred             EEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc-ceeeecccCceEEEec------------------
Confidence            799999 89999999988878899999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                            +..|||+|||.+.-.+   ......+
T Consensus       159 ------------------------------------------------------e~~VKLvDFGvSaQldsT~grRnT~i  184 (953)
T KOG0587|consen  159 ------------------------------------------------------NAEVKLVDFGVSAQLDSTVGRRNTFI  184 (953)
T ss_pred             ------------------------------------------------------cCcEEEeeeeeeeeeecccccccCcC
Confidence                                                                  5689999999985544   3456679


Q ss_pred             CCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ||++|||||++..     ..|..++|+||||++.-||..|.+|+..+-+         +..+..+-.-+|+.+.      
T Consensus       185 GtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP---------mraLF~IpRNPPPkLk------  249 (953)
T KOG0587|consen  185 GTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP---------MRALFLIPRNPPPKLK------  249 (953)
T ss_pred             CCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch---------hhhhccCCCCCCcccc------
Confidence            9999999999863     3578999999999999999999999987621         1122222222221110      


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                    -+..=.++|.|||..||..|-++||++.++++|||++...
T Consensus       250 ------------------------------rp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~  289 (953)
T KOG0587|consen  250 ------------------------------RPKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFITEQP  289 (953)
T ss_pred             ------------------------------chhhHHHHHHHHHHHHHhhccccCcchhhhccCCcccccc
Confidence                                          1122267999999999999999999999999999999443

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.92  E-value=3.6e-25  Score=199.65  Aligned_cols=185  Identities=24%  Similarity=0.351  Sum_probs=133.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ |++|+||||+||++.                   
T Consensus        85 lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~-~i~H~dl~p~nil~~-------------------  143 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQ-RYIHRDLAARNILVE-------------------  143 (284)
T ss_pred             EEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHhEEEc-------------------
Confidence            589999 889999998654 3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       144 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  170 (284)
T cd05038         144 -----------------------------------------------------SEDLVKISDFGLAKVLPEDKDYYYVKE  170 (284)
T ss_pred             -----------------------------------------------------CCCCEEEcccccccccccCCcceeccC
Confidence                                                                 24578999999986554211      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||.+.+..++.++|+|||||++|+|++|..||......           .....|..+...         
T Consensus       171 ~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~-----------~~~~~~~~~~~~---------  230 (284)
T cd05038         171 PGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAE-----------FLRMIGIAQGQM---------  230 (284)
T ss_pred             CCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccch-----------hccccccccccc---------
Confidence            123345699999999889999999999999999999999988654210           000111100000         


Q ss_pred             ccCccCchhhhccccccchhHHHhhh--cCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDK--YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                    ......+.+...  ...+..++.++.+|+.+||+.+|++|||+.|+++
T Consensus       231 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         231 --------------IVTRLLELLKEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             --------------cHHHHHHHHHcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                          000000111110  1122334578999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.92  E-value=4.4e-25  Score=198.10  Aligned_cols=172  Identities=19%  Similarity=0.354  Sum_probs=129.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ |++|+||||+||+++                   
T Consensus        82 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~~-g~~H~dl~p~nili~-------------------  140 (269)
T cd05065          82 IITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSEM-NYVHRDLAARNILVN-------------------  140 (269)
T ss_pred             EEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccChheEEEc-------------------
Confidence            589999 789999987653 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----AE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----~~  154 (329)
                                                                           ....++|+|||.+.......     ..
T Consensus       141 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  167 (269)
T cd05065         141 -----------------------------------------------------SNLVCKVSDFGLSRFLEDDTSDPTYTS  167 (269)
T ss_pred             -----------------------------------------------------CCCcEEECCCccccccccCcccccccc
Confidence                                                                 24578999999885433211     11


Q ss_pred             CC---CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          155 EI---QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       155 ~~---~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ..   .+..|+|||.+.+..++.++|+||+||++|++++ |..||....      .......+... -            
T Consensus       168 ~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~------~~~~~~~i~~~-~------------  228 (269)
T cd05065         168 SLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS------NQDVINAIEQD-Y------------  228 (269)
T ss_pred             ccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC------HHHHHHHHHcC-C------------
Confidence            11   1346999999998889999999999999999886 999997542      12221211100 0            


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                  ..+.+...+..+.+++.+||..+|.+||++.++++
T Consensus       229 ----------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         229 ----------------------------RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             ----------------------------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                        00112234567899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.92  E-value=3e-26  Score=196.81  Aligned_cols=193  Identities=27%  Similarity=0.402  Sum_probs=147.4

Q ss_pred             CcccccchhHHHHHHh---hcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKY---SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~---~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +.||+|..||..+...   .+...++++-+-+|+.-.+.||.||-.+..|||||+||+|||+                  
T Consensus       140 iCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILl------------------  201 (361)
T KOG1006|consen  140 ICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILL------------------  201 (361)
T ss_pred             eeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEE------------------
Confidence            4699998888776554   3446699999999999999999999998899999999999999                  


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEE  155 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~  155 (329)
                                                                            +....+||+|||.+-....  ..+..
T Consensus       202 ------------------------------------------------------dr~G~vKLCDFGIcGqLv~SiAkT~d  227 (361)
T KOG1006|consen  202 ------------------------------------------------------DRHGDVKLCDFGICGQLVDSIAKTVD  227 (361)
T ss_pred             ------------------------------------------------------ecCCCEeeecccchHhHHHHHHhhhc
Confidence                                                                  4467899999999844433  23456


Q ss_pred             CCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .|..+|+|||.+..  ..|..+||+||||+++||+.||.+|+.+-.     .-.+++..++  .|.+|. +..       
T Consensus       228 aGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~-----svfeql~~Vv--~gdpp~-l~~-------  292 (361)
T KOG1006|consen  228 AGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD-----SVFEQLCQVV--IGDPPI-LLF-------  292 (361)
T ss_pred             cCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH-----HHHHHHHHHH--cCCCCe-ecC-------
Confidence            78899999999874  358999999999999999999999997642     2233333332  233331 110       


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                        +.                        -.......+.+|+.-||..|-.+||...+++.+||+........+
T Consensus       293 --~~------------------------~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~fyr~y~~~~~~  339 (361)
T KOG1006|consen  293 --DK------------------------ECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKFPFYRMYAVEGPD  339 (361)
T ss_pred             --cc------------------------cccccCHHHHHHHHHHhhcccccCcchhhhhcCchhhhhhhcCCc
Confidence              00                        001235689999999999999999999999999999976654444

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=4.2e-25  Score=221.43  Aligned_cols=177  Identities=30%  Similarity=0.507  Sum_probs=130.7

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      =|||| ...|.+++..+... -..+.+.+++++|++||.|+|+ +|+|||||||.||++                     
T Consensus       674 QMEyCE~~ll~~iI~~N~~~-~~~d~~wrLFreIlEGLaYIH~-~giIHRDLKP~NIFL---------------------  730 (1351)
T KOG1035|consen  674 QMEYCEKTLLRDIIRRNHFN-SQRDEAWRLFREILEGLAYIHD-QGIIHRDLKPRNIFL---------------------  730 (1351)
T ss_pred             EHhhhhhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHh-CceeeccCCcceeEE---------------------
Confidence            39999 55666666665421 1478899999999999999999 599999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----------  149 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----------  149 (329)
                                                                         +....|||+|||.|....           
T Consensus       731 ---------------------------------------------------d~~~~VKIGDFGLAt~~~~~~~~~d~~~~  759 (1351)
T KOG1035|consen  731 ---------------------------------------------------DSRNSVKIGDFGLATDLKENLESIDQDLS  759 (1351)
T ss_pred             ---------------------------------------------------cCCCCeeecccccchhhhhhhhhHhhccC
Confidence                                                               345689999999985410           


Q ss_pred             ----------cccccCCCCCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHH
Q 020248          150 ----------KQFAEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL  216 (329)
Q Consensus       150 ----------~~~~~~~~~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~  216 (329)
                                ...+..+||.-|+|||++.+..   |..|+|+||||+||+||+.   ||...        .+....+..+
T Consensus       760 ~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts--------MERa~iL~~L  828 (1351)
T KOG1035|consen  760 FSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTS--------MERASILTNL  828 (1351)
T ss_pred             ccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCch--------HHHHHHHHhc
Confidence                      1345678999999999998764   9999999999999999985   45432        2222222111


Q ss_pred             -hCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          217 -IGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       217 -~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                       -|.+|..                                    ..+....-..-..+|+.||+.||.+||||.|+|++.
T Consensus       829 R~g~iP~~------------------------------------~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~  872 (1351)
T KOG1035|consen  829 RKGSIPEP------------------------------------ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSE  872 (1351)
T ss_pred             ccCCCCCC------------------------------------cccccccchHHHHHHHHHhcCCCccCCCHHHHhhcc
Confidence             2222221                                    001122234556899999999999999999999999


Q ss_pred             CcCC
Q 020248          296 WLSL  299 (329)
Q Consensus       296 wf~~  299 (329)
                      ||-.
T Consensus       873 llpp  876 (1351)
T KOG1035|consen  873 LLPP  876 (1351)
T ss_pred             CCCc
Confidence            9985

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.9e-25  Score=207.59  Aligned_cols=202  Identities=22%  Similarity=0.359  Sum_probs=152.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||+|+ |+++-+++-+.  +-|+++.++.+...+.+|+++.|. +|+|||||||+|||+                    
T Consensus       706 FVMdYIPGGDmMSLLIrm--gIFeE~LARFYIAEltcAiesVHk-mGFIHRDiKPDNILI--------------------  762 (1034)
T KOG0608|consen  706 FVMDYIPGGDMMSLLIRM--GIFEEDLARFYIAELTCAIESVHK-MGFIHRDIKPDNILI--------------------  762 (1034)
T ss_pred             EEEeccCCccHHHHHHHh--ccCHHHHHHHHHHHHHHHHHHHHh-ccceecccCccceEE--------------------
Confidence            599999 99999988876  349999999999999999999998 899999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc----------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----------  149 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~----------  149 (329)
                                                                          +...+|||.|||+..-+.          
T Consensus       763 ----------------------------------------------------DrdGHIKLTDFGLCTGfRWTHdskYYq~  790 (1034)
T KOG0608|consen  763 ----------------------------------------------------DRDGHIKLTDFGLCTGFRWTHDSKYYQE  790 (1034)
T ss_pred             ----------------------------------------------------ccCCceeeeeccccccceeccccccccC
Confidence                                                                446789999999862110          


Q ss_pred             -----------------------------------cccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcC
Q 020248          150 -----------------------------------KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML  194 (329)
Q Consensus       150 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~p  194 (329)
                                                         ......+||+.|+|||++....|+..+|.||.|||||||+.|++|
T Consensus       791 gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~p  870 (1034)
T KOG0608|consen  791 GDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPP  870 (1034)
T ss_pred             CCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCC
Confidence                                               011223889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHH
Q 020248          195 FAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFL  274 (329)
Q Consensus       195 f~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll  274 (329)
                      |-...+.+..      ..+            .             +           ++..+.-.  .-...++++.+||
T Consensus       871 f~~~tp~~tq------~kv------------~-------------n-----------w~~~l~~~--~~~~ls~e~~~li  906 (1034)
T KOG0608|consen  871 FLADTPGETQ------YKV------------I-------------N-----------WRNFLHIP--YQGNLSKEALDLI  906 (1034)
T ss_pred             ccCCCCCcce------eee------------e-------------e-----------hhhccccc--cccccCHHHHHHH
Confidence            9765322110      000            0             0           01111101  1123467899999


Q ss_pred             hhccCCCCCCCcC---HHHHhcCCCcCCCCCChhhhhcCCCccccccccce
Q 020248          275 VPLLDFTPEKRPT---AQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSK  322 (329)
Q Consensus       275 ~~~L~~dP~~R~t---a~ell~hpwf~~~~~~~~~~~~~~~~~~~~~~~~~  322 (329)
                      +++.. ++++|+-   ++++-+||||++++...-..+...-+-++.+-+++
T Consensus       907 ~kLc~-sad~RLGkng~d~vKaHpfFkgIDfsslRkq~ApYIP~ItHptDT  956 (1034)
T KOG0608|consen  907 QKLCC-SADSRLGKNGADQVKAHPFFKGIDFSSLRKQRAPYIPRITHPTDT  956 (1034)
T ss_pred             HHHhc-ChhhhhcccchhhhhcCccccccchHhhhhccCCcCccccCCCcc
Confidence            98765 7999984   67799999999999988666666666666554443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.92  E-value=7.1e-25  Score=221.86  Aligned_cols=125  Identities=26%  Similarity=0.406  Sum_probs=103.5

Q ss_pred             Cccccc-chhHHHHHHhhc---------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR---------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPI   70 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~---------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~   70 (329)
                      +||||+ |++|.+++....         ...++...+..++.||+.||+|||++ ||+||||||+||+++          
T Consensus        79 LVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~-GIIHRDLKPeNILLd----------  147 (932)
T PRK13184         79 YTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK-GVLHRDLKPDNILLG----------  147 (932)
T ss_pred             EEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC-CccccCCchheEEEc----------
Confidence            589999 899999887531         12356678889999999999999995 999999999999993          


Q ss_pred             CCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc
Q 020248           71 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  150 (329)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~  150 (329)
                                                                                    ....++|+|||.+.....
T Consensus       148 --------------------------------------------------------------~dg~vKLiDFGLAk~i~~  165 (932)
T PRK13184        148 --------------------------------------------------------------LFGEVVILDWGAAIFKKL  165 (932)
T ss_pred             --------------------------------------------------------------CCCCEEEEecCcceeccc
Confidence                                                                          245689999999854410


Q ss_pred             ---------------------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          151 ---------------------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       151 ---------------------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                                           .....+||+.|+|||++.+..++.++||||+||++|+|++|..||...
T Consensus       166 ~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~  234 (932)
T PRK13184        166 EEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRK  234 (932)
T ss_pred             ccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCc
Confidence                                 011246899999999999999999999999999999999999999754

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.92  E-value=1.7e-24  Score=205.64  Aligned_cols=154  Identities=20%  Similarity=0.316  Sum_probs=115.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHH
Q 020248           22 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLK  101 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (329)
                      +++..+..++.||+.||.|||++ |++||||||+||++..                                        
T Consensus       236 l~~~~~~~~~~qi~~aL~~LH~~-~ivHrdlkp~NiLl~~----------------------------------------  274 (401)
T cd05107         236 LSYMDLVGFSYQVANGMEFLASK-NCVHRDLAARNVLICE----------------------------------------  274 (401)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcC-CcCcccCCcceEEEeC----------------------------------------
Confidence            56777888999999999999995 9999999999999932                                        


Q ss_pred             HHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCccc
Q 020248          102 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSV  176 (329)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~  176 (329)
                                                      ...++|+|||.+.....     ......++..|+|||.+.+..++.++
T Consensus       275 --------------------------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  322 (401)
T cd05107         275 --------------------------------GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLS  322 (401)
T ss_pred             --------------------------------CCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHh
Confidence                                            34689999999854321     11223456789999999988899999


Q ss_pred             hHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHH
Q 020248          177 DMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL  255 (329)
Q Consensus       177 DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (329)
                      |+|||||++|+|++ |..||....      ....+.....  +..                                   
T Consensus       323 DvwslGvil~e~l~~g~~P~~~~~------~~~~~~~~~~--~~~-----------------------------------  359 (401)
T cd05107         323 DVWSFGILLWEIFTLGGTPYPELP------MNEQFYNAIK--RGY-----------------------------------  359 (401)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC------chHHHHHHHH--cCC-----------------------------------
Confidence            99999999999998 888986541      1111111100  000                                   


Q ss_pred             HhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       256 ~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                         ....+...+..+.+|+++||..+|++||+++||++.
T Consensus       360 ---~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         360 ---RMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             ---CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence               000122235689999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.92  E-value=1.2e-24  Score=195.52  Aligned_cols=173  Identities=23%  Similarity=0.371  Sum_probs=128.4

Q ss_pred             ccccc-chhHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            2 VLEFL-GDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      ++||+ +++|.+++.....    ..++...+..++.|++.||+|||++ |++|+||||+||+++.               
T Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~nili~~---------------  148 (273)
T cd05074          85 ILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK-NFIHRDLAARNCMLNE---------------  148 (273)
T ss_pred             EEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CEeecccchhhEEEcC---------------
Confidence            56788 7899888764321    2378889999999999999999995 9999999999999932               


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----  151 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----  151 (329)
                                                                               ...++|+|||.+......     
T Consensus       149 ---------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~  171 (273)
T cd05074         149 ---------------------------------------------------------NMTVCVADFGLSKKIYSGDYYRQ  171 (273)
T ss_pred             ---------------------------------------------------------CCCEEECcccccccccCCcceec
Confidence                                                                     346899999998654321     


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .....++..|++||.+.+..++.++|||||||++|+|++ |..||....      .......+..  +.           
T Consensus       172 ~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~-----------  232 (273)
T cd05074         172 GCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE------NSEIYNYLIK--GN-----------  232 (273)
T ss_pred             CCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC------HHHHHHHHHc--CC-----------
Confidence            112234567999999998889999999999999999998 888886541      1111111110  00           


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                  ....+...+..+.+++.+||..+|++|||+.|++++
T Consensus       233 ----------------------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         233 ----------------------------RLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             ----------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                        000112235689999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.92  E-value=1.4e-24  Score=209.69  Aligned_cols=189  Identities=21%  Similarity=0.294  Sum_probs=127.6

Q ss_pred             Cccccc-chhHHHHHHhhcC----------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI   57 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Ni   57 (329)
                      |||||+ +++|.+++.....                      ..++...++.++.|++.||.|||+. +|+||||||+||
T Consensus       262 LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~-~ivHrDLKp~NI  340 (507)
T PLN03224        262 LVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRI-GIVHRDIKPENL  340 (507)
T ss_pred             EEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCchHhE
Confidence            689999 8899998874210                      1245678899999999999999995 999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCce
Q 020248           58 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  137 (329)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (329)
                      ++..                                                                        ...+
T Consensus       341 Ll~~------------------------------------------------------------------------~~~~  348 (507)
T PLN03224        341 LVTV------------------------------------------------------------------------DGQV  348 (507)
T ss_pred             EECC------------------------------------------------------------------------CCcE
Confidence            9932                                                                        3578


Q ss_pred             EEeecCcccccccc----cccCCCCCCCcchHHhhcCC--------------------C--CccchHHHHHHHHHHHHhC
Q 020248          138 KVVDFGNACRANKQ----FAEEIQTRQYRAPEVILRAG--------------------Y--SFSVDMWSFACTAFELATG  191 (329)
Q Consensus       138 ~l~Dfg~a~~~~~~----~~~~~~~~~y~aPE~~~~~~--------------------~--s~~~DiwslG~il~~l~~g  191 (329)
                      +|+|||.+......    .....+++.|+|||.+....                    +  ..+.|+||+||++++|++|
T Consensus       349 kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~  428 (507)
T PLN03224        349 KIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVP  428 (507)
T ss_pred             EEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhC
Confidence            99999998544321    11223478999999876421                    1  2347999999999999998


Q ss_pred             Cc-CCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhc--CCChhhHH
Q 020248          192 DM-LFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY--RFSETDAR  268 (329)
Q Consensus       192 ~~-pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  268 (329)
                      .. ||.....      ..  ..+.+ ....-..|.                            ......+  ......+.
T Consensus       429 ~l~p~~~~~~------f~--~~~~~-~~~~~~~~r----------------------------~~~~~~~~~~~~d~~s~  471 (507)
T PLN03224        429 ELRPVANIRL------FN--TELRQ-YDNDLNRWR----------------------------MYKGQKYDFSLLDRNKE  471 (507)
T ss_pred             CCCCccchhh------hh--hHHhh-ccchHHHHH----------------------------hhcccCCCcccccccCh
Confidence            75 6643210      00  00000 000000000                            0000011  11233467


Q ss_pred             HHHHHHhhccCCCC---CCCcCHHHHhcCCCcCC
Q 020248          269 EFAEFLVPLLDFTP---EKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       269 ~~~dll~~~L~~dP---~~R~ta~ell~hpwf~~  299 (329)
                      ...||+.+||..+|   .+|+|++|+|+||||..
T Consensus       472 ~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        472 AGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             HHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            89999999999876   68999999999999964

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=2e-24  Score=201.44  Aligned_cols=191  Identities=27%  Similarity=0.380  Sum_probs=137.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||| .+||++.+.......+++.....|+..++.||+|||..+.  |||||||++|||+                  
T Consensus       149 LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILL------------------  210 (361)
T KOG1187|consen  149 LVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILL------------------  210 (361)
T ss_pred             EEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeE------------------
Confidence            699999 7899999998653378999999999999999999998654  9999999999999                  


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-cccc--
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAE--  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~--  154 (329)
                                                                            +.....||+|||+|..... ....  
T Consensus       211 ------------------------------------------------------D~~~~aKlsDFGLa~~~~~~~~~~~~  236 (361)
T KOG1187|consen  211 ------------------------------------------------------DEDFNAKLSDFGLAKLGPEGDTSVST  236 (361)
T ss_pred             ------------------------------------------------------CCCCCEEccCccCcccCCccccceee
Confidence                                                                  4467899999999955433 2211  


Q ss_pred             C-CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 E-IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~-~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      . .||.+|++||.+.....+.++||||||+++.|+++|+.+.........   .. +....       ...+... ...+
T Consensus       237 ~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~---~~-l~~w~-------~~~~~~~-~~~e  304 (361)
T KOG1187|consen  237 TVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGE---LS-LVEWA-------KPLLEEG-KLRE  304 (361)
T ss_pred             ecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCccc---cc-HHHHH-------HHHHHCc-chhh
Confidence            1 789999999999988899999999999999999999987764321111   00 11110       0000000 1111


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCCh-hhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE-TDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      +.|..                 +.. ...+. .+...+..+..+|++.+|.+||++.|+++
T Consensus       305 iiD~~-----------------l~~-~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  305 IVDPR-----------------LKE-GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             eeCCC-----------------ccC-CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence            11111                 000 01121 34566889999999999999999999744

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=7.7e-25  Score=206.44  Aligned_cols=171  Identities=22%  Similarity=0.373  Sum_probs=139.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||.||| .+||.+++..-....++.-...+++.||.+||.||..+ ++|||||...|+|+                    
T Consensus       340 IiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk-nFIHRDLAARNCLV--------------------  398 (1157)
T KOG4278|consen  340 IITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLV--------------------  398 (1157)
T ss_pred             EEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhhccc--------------------
Confidence            578999 88999999987655677778889999999999999997 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCCC-
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEIQ-  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~-  157 (329)
                                                                          +....||++|||+++.+... .+...| 
T Consensus       399 ----------------------------------------------------gEnhiVKvADFGLsRlMtgDTYTAHAGA  426 (1157)
T KOG4278|consen  399 ----------------------------------------------------GENHIVKVADFGLSRLMTGDTYTAHAGA  426 (1157)
T ss_pred             ----------------------------------------------------cccceEEeeccchhhhhcCCceecccCc
Confidence                                                                34567999999999776643 333334 


Q ss_pred             --CCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 --TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 --~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                        +..|.|||.+....++.++|||+|||++||+.| |..||.+.      +-.++..                       
T Consensus       427 KFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi------dlSqVY~-----------------------  477 (1157)
T KOG4278|consen  427 KFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI------DLSQVYG-----------------------  477 (1157)
T ss_pred             cCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc------cHHHHHH-----------------------
Confidence              568999999999999999999999999999977 88888775      2222222                       


Q ss_pred             cCccCchhhhccccccchhHHHhhh--cCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDK--YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                          ++...  +.-+++|+..+.+||+.||+|.|.+||+++|+-+
T Consensus       478 --------------------LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHq  518 (1157)
T KOG4278|consen  478 --------------------LLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQ  518 (1157)
T ss_pred             --------------------HHhccccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHH
Confidence                                22222  2356789999999999999999999999999854

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-24  Score=207.63  Aligned_cols=177  Identities=20%  Similarity=0.299  Sum_probs=143.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||++ ++||.+.+.......|.......++.||+.||.||.++ ++|||||...|+++                    
T Consensus       187 MV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk-rlvHRDLAARNlll--------------------  245 (1039)
T KOG0199|consen  187 MVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK-RLVHRDLAARNLLL--------------------  245 (1039)
T ss_pred             HHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhhee--------------------
Confidence            699999 89999999986656788999999999999999999997 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCC-
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEI-  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~-  156 (329)
                                                                          .....|||+|||+.+.....  .+... 
T Consensus       246 ----------------------------------------------------asprtVKI~DFGLmRaLg~ned~Yvm~p  273 (1039)
T KOG0199|consen  246 ----------------------------------------------------ASPRTVKICDFGLMRALGENEDMYVMAP  273 (1039)
T ss_pred             ----------------------------------------------------cccceeeeecccceeccCCCCcceEecC
Confidence                                                                33457999999999766532  22111 


Q ss_pred             ---CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          157 ---QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       157 ---~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                         -+..|+|||.+.-..++.+||+|++||++|||++ |.-||.+..      ..+++..|..                 
T Consensus       274 ~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~------g~qIL~~iD~-----------------  330 (1039)
T KOG0199|consen  274 QRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCR------GIQILKNIDA-----------------  330 (1039)
T ss_pred             CCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCC------HHHHHHhccc-----------------
Confidence               2457999999999999999999999999999987 899998873      3444444320                 


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                              ....+-+..|++.+.++|..||..+|++|||+..|.+.-..
T Consensus       331 ------------------------~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~~l  371 (1039)
T KOG0199|consen  331 ------------------------GERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDLVL  371 (1039)
T ss_pred             ------------------------cccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhHHH
Confidence                                    11223467789999999999999999999999998654333

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.91  E-value=3.4e-25  Score=214.98  Aligned_cols=188  Identities=27%  Similarity=0.394  Sum_probs=137.4

Q ss_pred             CcccccchhHHHHHHhh-cC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS-RY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~-~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +..|+|..+|.+++... .. ..........++.|++.||++||+ ++|+||||||.|||+.....              
T Consensus       580 IalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHs-l~iVHRDLkPQNILI~~~~~--------------  644 (903)
T KOG1027|consen  580 IALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHS-LKIVHRDLKPQNILISVPSA--------------  644 (903)
T ss_pred             EEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHh-cccccccCCCceEEEEccCC--------------
Confidence            35789999999999985 11 112223567889999999999999 89999999999999954210              


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------cc
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QF  152 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~  152 (329)
                                                                           ....+++|.|||++.+...      ..
T Consensus       645 -----------------------------------------------------~~~~ra~iSDfglsKkl~~~~sS~~r~  671 (903)
T KOG1027|consen  645 -----------------------------------------------------DGTLRAKISDFGLSKKLAGGKSSFSRL  671 (903)
T ss_pred             -----------------------------------------------------CcceeEEecccccccccCCCcchhhcc
Confidence                                                                 2245789999999966552      34


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhC-CcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....||-+|+|||++.+..-+.++||+|+||++|+.++| .+||-..        ...-+.|..                
T Consensus       672 s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~--------~~R~~NIl~----------------  727 (903)
T KOG1027|consen  672 SGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDS--------LERQANILT----------------  727 (903)
T ss_pred             cCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCch--------HHhhhhhhc----------------
Confidence            456788999999999998888899999999999998875 8898643        111111110                


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                             ++         ..+..       +......++.|||.+|+..+|..||+|.++|.||+|=.....
T Consensus       728 -------~~---------~~L~~-------L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~ekr  776 (903)
T KOG1027|consen  728 -------GN---------YTLVH-------LEPLPDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDSEKR  776 (903)
T ss_pred             -------Cc---------cceee-------eccCchHHHHHHHHHhcCCCcccCCCHHHHhCCCccCChHHH
Confidence                   00         00000       111111289999999999999999999999999999665433

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.91  E-value=8.9e-25  Score=206.44  Aligned_cols=173  Identities=24%  Similarity=0.361  Sum_probs=138.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||||+| |++|.+++..... .++..+...+|.+.+.||+|||++ +++||||...|||++.                  
T Consensus       238 ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k-~~IHRDIAARNcL~~~------------------  297 (474)
T KOG0194|consen  238 LVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSK-NCIHRDIAARNCLYSK------------------  297 (474)
T ss_pred             EEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHC-CCcchhHhHHHheecC------------------
Confidence            689999 9999999998753 599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                            ...+||+|||++.....   .....-
T Consensus       298 ------------------------------------------------------~~~vKISDFGLs~~~~~~~~~~~~~k  323 (474)
T KOG0194|consen  298 ------------------------------------------------------KGVVKISDFGLSRAGSQYVMKKFLKK  323 (474)
T ss_pred             ------------------------------------------------------CCeEEeCccccccCCcceeecccccc
Confidence                                                                  33579999999854431   111112


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      -+..|+|||.+...-|+.++||||+||++||+++ |..||.+..      ..+....+..-                   
T Consensus       324 lPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~------~~~v~~kI~~~-------------------  378 (474)
T KOG0194|consen  324 LPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK------NYEVKAKIVKN-------------------  378 (474)
T ss_pred             CcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC------HHHHHHHHHhc-------------------
Confidence            4678999999999999999999999999999988 888998873      22232222110                   


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                           ..+.+.+...+.....++.+|+..+|++|+|+.++.+
T Consensus       379 ---------------------~~r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  379 ---------------------GYRMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             ---------------------CccCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence                                 1122345567889999999999999999999999865

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=208.31  Aligned_cols=129  Identities=33%  Similarity=0.557  Sum_probs=111.8

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||| |++|...+..-.+ -+|++.++..++..+..||.|||. .|||||||||.||++....               
T Consensus        94 lvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrE-n~IvHRDlKP~NIvl~~Ge---------------  157 (732)
T KOG4250|consen   94 LVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRE-NGIVHRDLKPGNIVLQIGE---------------  157 (732)
T ss_pred             EEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHH-cCceeccCCCCcEEEeecC---------------
Confidence            589999 9999999987532 469999999999999999999998 5999999999999994321               


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                           +....-||+|||.|.-..  ...++.+
T Consensus       158 -----------------------------------------------------dgq~IyKLtDfG~Arel~d~s~~~S~v  184 (732)
T KOG4250|consen  158 -----------------------------------------------------DGQSIYKLTDFGAARELDDNSLFTSLV  184 (732)
T ss_pred             -----------------------------------------------------CCceEEeeecccccccCCCCCeeeeec
Confidence                                                                 123456999999997655  4678889


Q ss_pred             CCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          157 QTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       157 ~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                      ||..|.+||+... ..|+.-+|.||+||++|+.+||+.||.+.
T Consensus       185 GT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  185 GTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             CchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence            9999999999995 78999999999999999999999999765

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=3.4e-24  Score=189.52  Aligned_cols=190  Identities=25%  Similarity=0.381  Sum_probs=150.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|.||. |++|-=.+...  +.|+++.++.+...|..||.|||++ |||.||||.+|||+                    
T Consensus       328 fvieyv~ggdlmfhmqrq--rklpeeharfys~ei~lal~flh~r-giiyrdlkldnvll--------------------  384 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEICLALNFLHER-GIIYRDLKLDNVLL--------------------  384 (593)
T ss_pred             EEEEEecCcceeeehhhh--hcCcHHHhhhhhHHHHHHHHHHhhc-CeeeeeccccceEE--------------------
Confidence            367888 77776444443  4599999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc---cccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR---ANKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~---~~~~~~~~~  156 (329)
                                                                          +.+..+||.|+|....   -.....+.+
T Consensus       385 ----------------------------------------------------daeghikltdygmcke~l~~gd~tstfc  412 (593)
T KOG0695|consen  385 ----------------------------------------------------DAEGHIKLTDYGMCKEGLGPGDTTSTFC  412 (593)
T ss_pred             ----------------------------------------------------ccCCceeecccchhhcCCCCCccccccc
Confidence                                                                5578999999998732   234567789


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC-CCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF-CEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ||+.|.|||++.+..|++.+|.|+||++.+||+.|+.||.-...+.. .+..+.+                         
T Consensus       413 gtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedyl-------------------------  467 (593)
T KOG0695|consen  413 GTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYL-------------------------  467 (593)
T ss_pred             CCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHH-------------------------
Confidence            99999999999999999999999999999999999999975421111 0011111                         


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc------CHHHHhcCCCcCCCCCChhh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP------TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~------ta~ell~hpwf~~~~~~~~~  306 (329)
                                      +.-++.+....+...+-.+..+++..|..||.+|+      -++++-.|+||+.++|.--+
T Consensus       468 ----------------fqvilekqiriprslsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~le  528 (593)
T KOG0695|consen  468 ----------------FQVILEKQIRIPRSLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLE  528 (593)
T ss_pred             ----------------HHHHhhhcccccceeehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHh
Confidence                            22333444455666677788999999999999997      47899999999998886544

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.90  E-value=8e-24  Score=175.91  Aligned_cols=138  Identities=28%  Similarity=0.464  Sum_probs=114.9

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +.||.|..||..+..+.  ++..+++..+-.|+..++.||.|||+++.|||||+||+|||+                   
T Consensus       122 IcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLI-------------------  182 (282)
T KOG0984|consen  122 ICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILI-------------------  182 (282)
T ss_pred             EeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEE-------------------
Confidence            46899999999887764  345589999999999999999999999999999999999999                   


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccccc--CC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE--EI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~  156 (329)
                                                                           +...++|+||||.+-......++  ..
T Consensus       183 -----------------------------------------------------n~~GqVKiCDFGIsG~L~dSiAkt~da  209 (282)
T KOG0984|consen  183 -----------------------------------------------------NYDGQVKICDFGISGYLVDSIAKTMDA  209 (282)
T ss_pred             -----------------------------------------------------ccCCcEEEcccccceeehhhhHHHHhc
Confidence                                                                 34679999999999555443322  46


Q ss_pred             CCCCCcchHHhhc----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHH
Q 020248          157 QTRQYRAPEVILR----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  215 (329)
Q Consensus       157 ~~~~y~aPE~~~~----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~  215 (329)
                      |...|+|||.+..    ..|+.+|||||||+++.||.++++||..-     ..+..++..+++
T Consensus       210 GCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w-----~tpF~qLkqvVe  267 (282)
T KOG0984|consen  210 GCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW-----GTPFQQLKQVVE  267 (282)
T ss_pred             CCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc-----CCHHHHHHHHhc
Confidence            7889999999864    36999999999999999999999999754     367777777664

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.89  E-value=1e-23  Score=198.99  Aligned_cols=172  Identities=20%  Similarity=0.332  Sum_probs=140.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ -+.|..++...+ ..|+......+|.||..||+|||++ .++||||...|||+                    
T Consensus       467 ivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSk-rfVHRDIAaRNiLV--------------------  524 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESK-RFVHRDIAARNILV--------------------  524 (974)
T ss_pred             EEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhh-chhhhhhhhhheee--------------------
Confidence            689999 789999999876 4689999999999999999999996 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc----cC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA----EE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~----~~  155 (329)
                                                                          .+..+|||+|||+++.......    ..
T Consensus       525 ----------------------------------------------------sSp~CVKLaDFGLSR~~ed~~yYkaS~~  552 (974)
T KOG4257|consen  525 ----------------------------------------------------SSPQCVKLADFGLSRYLEDDAYYKASRG  552 (974)
T ss_pred             ----------------------------------------------------cCcceeeecccchhhhccccchhhcccc
Confidence                                                                3456899999999977765322    12


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHH-hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~-~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .-+..|||||.+--..++.+||||-||+..||++ .|.-||.+..      +.+++..|.                    
T Consensus       553 kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvk------NsDVI~~iE--------------------  606 (974)
T KOG4257|consen  553 KLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVK------NSDVIGHIE--------------------  606 (974)
T ss_pred             ccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccc------ccceEEEec--------------------
Confidence            2266899999999999999999999999999974 5999998872      222222221                    


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                         .                  ..+.+.+..|+..+..||.+||.++|.+||+++||..
T Consensus       607 ---n------------------GeRlP~P~nCPp~LYslmskcWayeP~kRPrftei~~  644 (974)
T KOG4257|consen  607 ---N------------------GERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIKA  644 (974)
T ss_pred             ---C------------------CCCCCCCCCCChHHHHHHHHHhccCcccCCcHHHHHH
Confidence               0                  1234578889999999999999999999999998743

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.89  E-value=7.3e-24  Score=204.34  Aligned_cols=172  Identities=19%  Similarity=0.351  Sum_probs=146.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|.||| .++|..|+..+.+ .|+.-+..-+++.|+.||.||.+ +|.+||||...|||+                    
T Consensus       707 IiTEyMENGsLDsFLR~~DG-qftviQLVgMLrGIAsGMkYLsd-m~YVHRDLAARNILV--------------------  764 (996)
T KOG0196|consen  707 IITEYMENGSLDSFLRQNDG-QFTVIQLVGMLRGIASGMKYLSD-MNYVHRDLAARNILV--------------------  764 (996)
T ss_pred             EEhhhhhCCcHHHHHhhcCC-ceEeehHHHHHHHHHHHhHHHhh-cCchhhhhhhhheee--------------------
Confidence            578999 8999999998763 48889999999999999999999 799999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                          +.+..+|+.|||+++...+.    .+..
T Consensus       765 ----------------------------------------------------NsnLvCKVsDFGLSRvledd~~~~ytt~  792 (996)
T KOG0196|consen  765 ----------------------------------------------------NSNLVCKVSDFGLSRVLEDDPEAAYTTL  792 (996)
T ss_pred             ----------------------------------------------------ccceEEEeccccceeecccCCCcccccc
Confidence                                                                44678999999999765432    2222


Q ss_pred             CC--CCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          156 IQ--TRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       156 ~~--~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      .|  +..|.|||.+.-.+++.+|||||+|+++||.++ |..||-.+      .+.+++..|++=.+.+            
T Consensus       793 GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdm------SNQdVIkaIe~gyRLP------------  854 (996)
T KOG0196|consen  793 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM------SNQDVIKAIEQGYRLP------------  854 (996)
T ss_pred             CCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccccc------chHHHHHHHHhccCCC------------
Confidence            33  568999999999999999999999999999755 99999888      4777777776544443            


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                   .|.+++..+..||..||++|-..||++++|++
T Consensus       855 -----------------------------pPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~  886 (996)
T KOG0196|consen  855 -----------------------------PPMDCPAALYQLMLDCWQKDRNRRPKFAQIVS  886 (996)
T ss_pred             -----------------------------CCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence                                         35678999999999999999999999999976

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=1.4e-22  Score=212.83  Aligned_cols=184  Identities=17%  Similarity=0.261  Sum_probs=124.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH---hhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH---RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH---~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||| |++|.+++..     +++..+..++.|++.||+|||   +. +|+||||||+||++...              
T Consensus       760 lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~-~iiH~dlkp~Nil~~~~--------------  819 (968)
T PLN00113        760 LIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHCRCSP-AVVVGNLSPEKIIIDGK--------------  819 (968)
T ss_pred             EEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCC-CeecCCCCHHhEEECCC--------------
Confidence            589999 9999999963     788999999999999999999   53 89999999999999321              


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCC
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEI  156 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~  156 (329)
                                                                                ...++. ||.+..... .....
T Consensus       820 ----------------------------------------------------------~~~~~~-~~~~~~~~~-~~~~~  839 (968)
T PLN00113        820 ----------------------------------------------------------DEPHLR-LSLPGLLCT-DTKCF  839 (968)
T ss_pred             ----------------------------------------------------------CceEEE-ecccccccc-CCCcc
Confidence                                                                      112221 333221111 12236


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++..|+|||++.+..++.++||||+||++|||++|+.||....+.     ...+....+..-.        ......+.+
T Consensus       840 ~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~-----~~~~~~~~~~~~~--------~~~~~~~~~  906 (968)
T PLN00113        840 ISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV-----HGSIVEWARYCYS--------DCHLDMWID  906 (968)
T ss_pred             ccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC-----CCcHHHHHHHhcC--------ccchhheeC
Confidence            788999999999889999999999999999999999999543210     0111111110000        000000000


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                       ............+..++.+++.+||+.||++|||+.|+++.
T Consensus       907 -----------------~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        907 -----------------PSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             -----------------ccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHH
Confidence                             00001111233445678899999999999999999999874

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.87  E-value=3.7e-22  Score=187.39  Aligned_cols=180  Identities=21%  Similarity=0.357  Sum_probs=138.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|+||| .++|..|+..+....+.......||.||++||+||.+ ++++|||+.+.|||+                    
T Consensus       612 mI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes-~nfVHrd~a~rNcLv--------------------  670 (807)
T KOG1094|consen  612 MITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLES-LNFVHRDLATRNCLV--------------------  670 (807)
T ss_pred             HHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHh-hchhhccccccceee--------------------
Confidence            589999 8999999999854444556677799999999999999 799999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-cc----cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QF----AE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~----~~  154 (329)
                                                                          +.+..+|++|||.++-.-. ..    -+
T Consensus       671 ----------------------------------------------------~~e~~iKiadfgmsR~lysg~yy~vqgr  698 (807)
T KOG1094|consen  671 ----------------------------------------------------DGEFTIKIADFGMSRNLYSGDYYRVQGR  698 (807)
T ss_pred             ----------------------------------------------------cCcccEEecCcccccccccCCceeeecc
Confidence                                                                5578899999999853322 11    12


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh--CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT--GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      .+-+..|||+|.++-.+++++||+|++|+++||+++  ...||...      .+.+.....-+.+...+...        
T Consensus       699 ~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~l------t~e~vven~~~~~~~~~~~~--------  764 (807)
T KOG1094|consen  699 AVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQL------TDEQVVENAGEFFRDQGRQV--------  764 (807)
T ss_pred             eeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhh------hHHHHHHhhhhhcCCCCcce--------
Confidence            244779999999999999999999999999999855  67777765      23444333333322221100        


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                -...+..++..+..+|.+||..+-++|||+.++..
T Consensus       765 --------------------------~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~  799 (807)
T KOG1094|consen  765 --------------------------VLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHL  799 (807)
T ss_pred             --------------------------eccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHH
Confidence                                      11245667788889999999999999999999854

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-22  Score=184.11  Aligned_cols=183  Identities=28%  Similarity=0.358  Sum_probs=137.8

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhh-CCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-LGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~-~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |+||| |-+|.=+++.+  +.+++.+++.|.-||+.||.||... --|||-||||.|||+..-                 
T Consensus       546 VLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~G-----------------  606 (775)
T KOG1151|consen  546 VLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNG-----------------  606 (775)
T ss_pred             eeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecC-----------------
Confidence            78999 77888777776  4599999999999999999999972 139999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                          .....++|.|||++.-+..         
T Consensus       607 ----------------------------------------------------tacGeIKITDFGLSKIMdddSy~~vdGm  634 (775)
T KOG1151|consen  607 ----------------------------------------------------TACGEIKITDFGLSKIMDDDSYNSVDGM  634 (775)
T ss_pred             ----------------------------------------------------cccceeEeeecchhhhccCCccCcccce
Confidence                                                                2245789999999965542         


Q ss_pred             -ccccCCCCCCCcchHHhhcC----CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHH--HHHHHhCCCcHH
Q 020248          151 -QFAEEIQTRQYRAPEVILRA----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLA--LMMELIGKMPRK  223 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~~----~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~--~i~~~~g~~p~~  223 (329)
                       -.....||..|+|||++...    +.+.++||||+|||||..+.|+-||-...     ...+++.  .|.....     
T Consensus       635 eLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnq-----sQQdILqeNTIlkAtE-----  704 (775)
T KOG1151|consen  635 ELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQ-----SQQDILQENTILKATE-----  704 (775)
T ss_pred             eeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCch-----hHHHHHhhhchhccee-----
Confidence             23345778999999999755    37899999999999999999999996431     1111111  1100000     


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                        -..+.-...+.++.+||++||.+.-++|+.+-++..||||..
T Consensus       705 ----------------------------------VqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  705 ----------------------------------VQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             ----------------------------------ccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence                                              000111233568899999999999999999999999999975

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.5e-22  Score=199.49  Aligned_cols=191  Identities=24%  Similarity=0.363  Sum_probs=145.5

Q ss_pred             cccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            2 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      +||||..+|+.++....  .+....+-.++.|++.|+.|+|+ +||.|||+|++|+++..                    
T Consensus       399 ~mE~~~~Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~-~GiahrdlK~enll~~~--------------------  455 (601)
T KOG0590|consen  399 SMEYCPYDLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHS-MGLAHRDLKLENLLVTE--------------------  455 (601)
T ss_pred             hhhcccHHHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHh-cCceeccCccccEEEec--------------------
Confidence            48999339999999862  38888999999999999999999 69999999999999933                    


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------cccc
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QFAE  154 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~~~  154 (329)
                                                                          ...++++|||.+..+..       ....
T Consensus       456 ----------------------------------------------------~g~lki~Dfg~~~vf~~~~e~~~~~~~g  483 (601)
T KOG0590|consen  456 ----------------------------------------------------NGILKIIDFGAASVFRYPWEKNIHESSG  483 (601)
T ss_pred             ----------------------------------------------------CCceEEeecCcceeeccCcchhhhhhcC
Confidence                                                                45789999998843332       2344


Q ss_pred             CCCCCCCcchHHhhcCCCC-ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s-~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .+|+.+|+|||++.+..|. ...||||.|+++..|++|+.||......+..                             
T Consensus       484 ~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~-----------------------------  534 (601)
T KOG0590|consen  484 IVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNS-----------------------------  534 (601)
T ss_pred             cccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccc-----------------------------
Confidence            5788999999999998875 5799999999999999999999876321110                             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      +++..+.          ................+...+.+|.+||++||.+|+|+.+|++.+||+.+..+...
T Consensus       535 ~~~~~~~----------~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~~c~v~  597 (601)
T KOG0590|consen  535 FKTNNYS----------DQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIECCHVD  597 (601)
T ss_pred             hhhhccc----------cccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcceEEec
Confidence            0000000          00111112222334557889999999999999999999999999999998776544

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=9e-22  Score=195.81  Aligned_cols=174  Identities=22%  Similarity=0.436  Sum_probs=134.8

Q ss_pred             Cccccc-chhHHHHHHhhc------------C--CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR------------Y--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~------------~--~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +|+||+ .++|.+++....            .  ..++......+++||+.|++||+++ .++||||...|||+..    
T Consensus       379 ~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~-~~vHRDLAaRNVLi~~----  453 (609)
T KOG0200|consen  379 VIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV-PCVHRDLAARNVLITK----  453 (609)
T ss_pred             EEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC-CccchhhhhhhEEecC----
Confidence            478999 889999999875            0  1288889999999999999999995 9999999999999933    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...+|++|||++
T Consensus       454 --------------------------------------------------------------------~~~~kIaDFGla  465 (609)
T KOG0200|consen  454 --------------------------------------------------------------------NKVIKIADFGLA  465 (609)
T ss_pred             --------------------------------------------------------------------CCEEEEccccce
Confidence                                                                                457899999999


Q ss_pred             ccccc-cccc---CC--CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhC
Q 020248          146 CRANK-QFAE---EI--QTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIG  218 (329)
Q Consensus       146 ~~~~~-~~~~---~~--~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g  218 (329)
                      +.... ....   ..  -+..|||||.+....|+.++||||+|+++||+++ |..||.+..     ...+.+..+.    
T Consensus       466 r~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~-----~~~~l~~~l~----  536 (609)
T KOG0200|consen  466 RDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP-----PTEELLEFLK----  536 (609)
T ss_pred             eccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC-----cHHHHHHHHh----
Confidence            64332 1111   12  2456999999999999999999999999999977 888887631     0111111110    


Q ss_pred             CCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          219 KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      .                                     ..+...|..+..++.++|+.||+.+|++||+++++.+
T Consensus       537 ~-------------------------------------G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  537 E-------------------------------------GNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             c-------------------------------------CCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence            0                                     1123356677889999999999999999999999865

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.85  E-value=7.8e-22  Score=187.66  Aligned_cols=182  Identities=31%  Similarity=0.461  Sum_probs=144.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||| |++|++...-.  +++++.++.++|+..+.|++|||+ .|-+|||||..||+++                   
T Consensus        89 icMEycgggslQdiy~~T--gplselqiayvcRetl~gl~ylhs-~gk~hRdiKGanillt-------------------  146 (829)
T KOG0576|consen   89 ICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLKYLHS-QGKIHRDIKGANILLT-------------------  146 (829)
T ss_pred             EEEEecCCCcccceeeec--ccchhHHHHHHHhhhhccchhhhc-CCcccccccccceeec-------------------
Confidence            479999 78999876643  569999999999999999999999 5999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++++|||.+...+.   +...+.
T Consensus       147 -----------------------------------------------------d~gDvklaDfgvsaqitati~Krksfi  173 (829)
T KOG0576|consen  147 -----------------------------------------------------DEGDVKLADFGVSAQITATIAKRKSFI  173 (829)
T ss_pred             -----------------------------------------------------ccCceeecccCchhhhhhhhhhhhccc
Confidence                                                                 356799999999854442   334679


Q ss_pred             CCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          157 QTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       157 ~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ||++|||||+.-   ...|...+|+|++|++.-|+..-.+|....       .......|+...|.-|+.+..       
T Consensus       174 GtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl-------hpmr~l~LmTkS~~qpp~lkD-------  239 (829)
T KOG0576|consen  174 GTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL-------HPMRALFLMTKSGFQPPTLKD-------  239 (829)
T ss_pred             CCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc-------chHHHHHHhhccCCCCCcccC-------
Confidence            999999999865   346999999999999999998877766543       344444455555554432211       


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                                   ...-.+.|.+|++.+|..+|.+|||++-+|+|||...-
T Consensus       240 -----------------------------k~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~  277 (829)
T KOG0576|consen  240 -----------------------------KTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT  277 (829)
T ss_pred             -----------------------------CccchHHHHHHHHHHhcCCCccCCChhhheeceeeccc
Confidence                                         01115689999999999999999999999999998865

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.84  E-value=7.3e-21  Score=184.58  Aligned_cols=172  Identities=22%  Similarity=0.367  Sum_probs=134.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||.+|| +++|.+++..++ ..+.......|+.||+.||.|||.+ +++||||...|||+..                  
T Consensus       774 lvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~q-rlVHrdLaaRNVLVks------------------  833 (1177)
T KOG1025|consen  774 LVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQ-RLVHRDLAARNVLVKS------------------  833 (1177)
T ss_pred             HHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhc-chhhhhhhhhheeecC------------------
Confidence            578899 899999999876 4688889999999999999999996 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccC-
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEE-  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~-  155 (329)
                                                                            ...+++.|||.++.....   .... 
T Consensus       834 ------------------------------------------------------P~hvkitdfgla~ll~~d~~ey~~~~  859 (1177)
T KOG1025|consen  834 ------------------------------------------------------PNHVKITDFGLAKLLAPDEKEYSAPG  859 (1177)
T ss_pred             ------------------------------------------------------CCeEEEEecchhhccCcccccccccc
Confidence                                                                  458999999999655431   1111 


Q ss_pred             -CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 -IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 -~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                       -.++.|+|-|.+...+|++++||||+||++||++| |..|+.+.+       ...+.++.+.                 
T Consensus       860 gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~-------~~eI~dlle~-----------------  915 (1177)
T KOG1025|consen  860 GKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP-------AEEIPDLLEK-----------------  915 (1177)
T ss_pred             cccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC-------HHHhhHHHhc-----------------
Confidence             22567888888889999999999999999999987 888887762       1111111111                 


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             ..+..-+..+.-.+.-+|.+||..|+..||+++++.+
T Consensus       916 -----------------------geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  916 -----------------------GERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             -----------------------cccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHH
Confidence                                   0112245567778899999999999999999999754

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.7e-21  Score=166.83  Aligned_cols=187  Identities=22%  Similarity=0.281  Sum_probs=133.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++|||+ -++|.+-+..   .++.+...+.++.|+++|+.|+|++ +++|||||.+|||+-..                 
T Consensus        99 F~qE~aP~gdL~snv~~---~GigE~~~K~v~~ql~SAi~fMHsk-nlVHRdlK~eNiLif~~-----------------  157 (378)
T KOG1345|consen   99 FVQEFAPRGDLRSNVEA---AGIGEANTKKVFAQLLSAIEFMHSK-NLVHRDLKAENILIFDA-----------------  157 (378)
T ss_pred             EeeccCccchhhhhcCc---ccccHHHHHHHHHHHHHHHHHhhcc-chhhcccccceEEEecC-----------------
Confidence            478999 6788876665   3589999999999999999999997 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ...+|||+|||.+++.+......-...
T Consensus       158 -----------------------------------------------------df~rvKlcDFG~t~k~g~tV~~~~~~~  184 (378)
T KOG1345|consen  158 -----------------------------------------------------DFYRVKLCDFGLTRKVGTTVKYLEYVN  184 (378)
T ss_pred             -----------------------------------------------------CccEEEeeecccccccCceehhhhhhc
Confidence                                                                 234899999999988776554455567


Q ss_pred             CCcchHHhhcC-----CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          160 QYRAPEVILRA-----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       160 ~y~aPE~~~~~-----~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .|.+||++...     ...+..|+|.||+++|..++|.+||....    ..+.....-+.-.-|..| .+          
T Consensus       185 ~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~----~~d~~Y~~~~~w~~rk~~-~~----------  249 (378)
T KOG1345|consen  185 NYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKAS----IMDKPYWEWEQWLKRKNP-AL----------  249 (378)
T ss_pred             ccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhh----ccCchHHHHHHHhcccCc-cC----------
Confidence            89999987643     35788999999999999999999997542    111111111111111111 00          


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCC---cCHHHHhcCCCcCCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R---~ta~ell~hpwf~~~~  301 (329)
                                               ...=...++.+.++.++-|..++++|   -+++.-...-|....-
T Consensus       250 -------------------------P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~E~~i  294 (378)
T KOG1345|consen  250 -------------------------PKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLWKEKLI  294 (378)
T ss_pred             -------------------------chhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHhhh
Confidence                                     00001234567788888999999999   5666666677766543

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.82  E-value=8.8e-20  Score=155.49  Aligned_cols=143  Identities=41%  Similarity=0.651  Sum_probs=121.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++||++ |.+|.+++.... ..++...+..++.+++.++.+||+. |++|+||+|.||++...                 
T Consensus        68 ~~~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~-~~~H~dl~~~ni~~~~~-----------------  128 (215)
T cd00180          68 LVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSN-GIIHRDLKPENILLDSD-----------------  128 (215)
T ss_pred             EEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHhhEEEeCC-----------------
Confidence            579999 699999988752 3489999999999999999999995 99999999999999320                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                            ...++|+|||.+......   .....
T Consensus       129 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  154 (215)
T cd00180         129 ------------------------------------------------------NGKVKLADFGLSKLLTSDKSLLKTIV  154 (215)
T ss_pred             ------------------------------------------------------CCcEEEecCCceEEccCCcchhhccc
Confidence                                                                  357899999998655443   33455


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +...|++||.+... .++.+.|+|++|++++++                                               
T Consensus       155 ~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-----------------------------------------------  187 (215)
T cd00180         155 GTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-----------------------------------------------  187 (215)
T ss_pred             CCCCccChhHhcccCCCCchhhhHHHHHHHHHH-----------------------------------------------
Confidence            67789999999887 788999999999999997                                               


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                                                      ..+.+++.+|+..||++||++.++++|+
T Consensus       188 --------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 --------------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             --------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                                            1567899999999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.82  E-value=7.8e-20  Score=164.84  Aligned_cols=170  Identities=19%  Similarity=0.298  Sum_probs=129.9

Q ss_pred             cccccc-hhHHHHHHhhc------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            2 VLEFLG-DSLLRLIKYSR------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         2 V~e~~g-~sL~~~~~~~~------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +++++| +||..|+..-+      .+.++..+...++.|++.|++|||.. ||||.||...|+++               
T Consensus       366 ~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~-~ViHkDiAaRNCvI---------------  429 (563)
T KOG1024|consen  366 LYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH-GVIHKDIAARNCVI---------------  429 (563)
T ss_pred             EEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc-Ccccchhhhhccee---------------
Confidence            355664 78999888322      23477778889999999999999995 99999999999999               


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccccc
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  154 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~  154 (329)
                                                                               +...+++|+|-.+++..-.....
T Consensus       430 ---------------------------------------------------------dd~LqVkltDsaLSRDLFP~DYh  452 (563)
T KOG1024|consen  430 ---------------------------------------------------------DDQLQVKLTDSALSRDLFPGDYH  452 (563)
T ss_pred             ---------------------------------------------------------hhheeEEeccchhccccCccccc
Confidence                                                                     44578999998887432211111


Q ss_pred             C-----CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          155 E-----IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       155 ~-----~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      .     -.+..||++|-+....|+..+|+||||+++|||++ |+.|+..-      ++.+.                   
T Consensus       453 cLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeI------DPfEm-------------------  507 (563)
T KOG1024|consen  453 CLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEI------DPFEM-------------------  507 (563)
T ss_pred             ccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcccc------CHHHH-------------------
Confidence            1     22668999999999999999999999999999987 88888654      22211                   


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhc--CCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKY--RFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              +.++.+.+  .-|..++.++..+|--||..+|++||+++++..
T Consensus       508 ------------------------~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  508 ------------------------EHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             ------------------------HHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence                                    12222222  246678999999999999999999999999864

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=7.6e-20  Score=167.25  Aligned_cols=180  Identities=23%  Similarity=0.341  Sum_probs=128.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhC-------CccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL-------GIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~-------giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      ||.+|. .+||+|++....   ++.+....++.-++.||+|||.+.       .|.|||||..|||+             
T Consensus       286 LvTdYHe~GSL~DyL~r~t---v~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILV-------------  349 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRNT---VTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV-------------  349 (513)
T ss_pred             EeeecccCCcHHHHHhhcc---CCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEE-------------
Confidence            688999 789999999954   999999999999999999999532       38999999999999             


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---  149 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---  149 (329)
                                                                                 .....+.|+|+|+|.+..   
T Consensus       350 -----------------------------------------------------------Kkn~~C~IADLGLAv~h~~~t  370 (513)
T KOG2052|consen  350 -----------------------------------------------------------KKNGTCCIADLGLAVRHDSDT  370 (513)
T ss_pred             -----------------------------------------------------------ccCCcEEEeeceeeEEecccC
Confidence                                                                       345689999999996554   


Q ss_pred             ----cccccCCCCCCCcchHHhhcC----CC-C-ccchHHHHHHHHHHHHhC----------CcCCCCCCCCCCCCchHH
Q 020248          150 ----KQFAEEIQTRQYRAPEVILRA----GY-S-FSVDMWSFACTAFELATG----------DMLFAPKSGQGFCEDEDH  209 (329)
Q Consensus       150 ----~~~~~~~~~~~y~aPE~~~~~----~~-s-~~~DiwslG~il~~l~~g----------~~pf~~~~~~~~~~~~~~  209 (329)
                          .+....+||..|||||++.+.    .+ + ..+||||||.++||++..          ++||.+.-+  .+...+.
T Consensus       371 ~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp--~DPs~ee  448 (513)
T KOG2052|consen  371 DTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVP--SDPSFEE  448 (513)
T ss_pred             CcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCC--CCCCHHH
Confidence                245678999999999998753    12 2 469999999999998763          345543311  1112222


Q ss_pred             HHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH
Q 020248          210 LALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  289 (329)
Q Consensus       210 l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~  289 (329)
                      +..++-+-.                       .+...+++|.           +......+..||+.||.-||..|.||-
T Consensus       449 MrkVVCv~~-----------------------~RP~ipnrW~-----------s~~~l~~m~klMkeCW~~Np~aRltAL  494 (513)
T KOG2052|consen  449 MRKVVCVQK-----------------------LRPNIPNRWK-----------SDPALRVMAKLMKECWYANPAARLTAL  494 (513)
T ss_pred             Hhcceeecc-----------------------cCCCCCcccc-----------cCHHHHHHHHHHHHhhcCCchhhhHHH
Confidence            222211000                       0011111221           233456788999999999999999976


Q ss_pred             HH
Q 020248          290 QC  291 (329)
Q Consensus       290 el  291 (329)
                      -+
T Consensus       495 ri  496 (513)
T KOG2052|consen  495 RI  496 (513)
T ss_pred             HH
Confidence            54

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1e-19  Score=167.55  Aligned_cols=121  Identities=31%  Similarity=0.474  Sum_probs=101.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhh--------CCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE--------LGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~--------~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      ||++|. .+||.++++.+.   +++....+++.-++.||+|||+.        ..|+|||||..|||+..          
T Consensus       285 LVt~fh~kGsL~dyL~~nt---isw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~----------  351 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKANT---ISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKN----------  351 (534)
T ss_pred             EEeeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEcc----------
Confidence            688998 789999999976   89999999999999999999962        24999999999999933          


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--  149 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--  149 (329)
                                                                                    ...+.|+|||+|.++.  
T Consensus       352 --------------------------------------------------------------DlTccIaDFGLAl~~~p~  369 (534)
T KOG3653|consen  352 --------------------------------------------------------------DLTCCIADFGLALRLEPG  369 (534)
T ss_pred             --------------------------------------------------------------CCcEEeeccceeEEecCC
Confidence                                                                          4578999999995554  


Q ss_pred             ---cccccCCCCCCCcchHHhhcC-CCC-----ccchHHHHHHHHHHHHhCCcCCC
Q 020248          150 ---KQFAEEIQTRQYRAPEVILRA-GYS-----FSVDMWSFACTAFELATGDMLFA  196 (329)
Q Consensus       150 ---~~~~~~~~~~~y~aPE~~~~~-~~s-----~~~DiwslG~il~~l~~g~~pf~  196 (329)
                         ......+||..|||||++.+. .+.     .+.||||+|.++||+++....+.
T Consensus       370 ~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~  425 (534)
T KOG3653|consen  370 KPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDAD  425 (534)
T ss_pred             CCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence               233446899999999999875 233     46999999999999999776664

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.77  E-value=1.2e-19  Score=170.46  Aligned_cols=121  Identities=26%  Similarity=0.484  Sum_probs=107.7

Q ss_pred             Cccccc--chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~--g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |+||..  |-+|++++..+..  +++.+++.|++||+.|+++||+. ||+|||||-+||.+                   
T Consensus       646 l~te~hg~gIDLFd~IE~kp~--m~E~eAk~IFkQV~agi~hlh~~-~ivhrdikdenviv-------------------  703 (772)
T KOG1152|consen  646 LETEVHGEGIDLFDFIEFKPR--MDEPEAKLIFKQVVAGIKHLHDQ-GIVHRDIKDENVIV-------------------  703 (772)
T ss_pred             EEecCCCCCcchhhhhhccCc--cchHHHHHHHHHHHhcccccccc-CceecccccccEEE-------------------
Confidence            467887  5689999999865  99999999999999999999995 99999999999999                   


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc-ccccccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~-~~~~~~~~~  157 (329)
                                                                           +....++|+|||.+... ..++..++|
T Consensus       704 -----------------------------------------------------d~~g~~klidfgsaa~~ksgpfd~f~g  730 (772)
T KOG1152|consen  704 -----------------------------------------------------DSNGFVKLIDFGSAAYTKSGPFDVFVG  730 (772)
T ss_pred             -----------------------------------------------------ecCCeEEEeeccchhhhcCCCcceeee
Confidence                                                                 44678999999998443 457888999


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFA  196 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~  196 (329)
                      |..|.|||++-|.+| +..-|||++|+++|.++....||.
T Consensus       731 tv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  731 TVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             eccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            999999999999876 788999999999999999888874

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.74  E-value=1.1e-17  Score=145.10  Aligned_cols=123  Identities=37%  Similarity=0.555  Sum_probs=103.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++||++ |.+|.+++..... .++...+..++.|++.++.+||+. +++|+|+++.||++..                  
T Consensus        74 ~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~lh~~-~i~h~di~~~ni~v~~------------------  133 (225)
T smart00221       74 LVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEYLHSL-GIVHRDLKPENILLGM------------------  133 (225)
T ss_pred             EEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcC------------------
Confidence            478999 6699999987531 278899999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       134 ------------------------------------------------------~~~~~l~d~g~~~~~~~~~~~~~~~~  159 (225)
T smart00221      134 ------------------------------------------------------DGLVKLADFGLARFIHRDLAALLKTV  159 (225)
T ss_pred             ------------------------------------------------------CCCEEEeeCceeeEecCcccccccce
Confidence                                                                  3579999999886554432    445


Q ss_pred             CCCCCCcchHHh-hcCCCCccchHHHHHHHHHHHHhCCcCCCC
Q 020248          156 IQTRQYRAPEVI-LRAGYSFSVDMWSFACTAFELATGDMLFAP  197 (329)
Q Consensus       156 ~~~~~y~aPE~~-~~~~~s~~~DiwslG~il~~l~~g~~pf~~  197 (329)
                      .++..|++||.+ ....++.++|+|+||+++++|++|+.||..
T Consensus       160 ~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      160 KGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            667789999998 666788899999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=8.1e-18  Score=168.17  Aligned_cols=168  Identities=24%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             cccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCC
Q 020248            4 EFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEG   83 (329)
Q Consensus         4 e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~   83 (329)
                      +|.-.||+|.+.....  +..-+.+.|++||+.||.-+|. .||||||||.+|||++.                      
T Consensus       101 qyvkhnLyDRlSTRPF--L~~iEKkWiaFQLL~al~qcH~-~gVcHGDIKsENILiTS----------------------  155 (1431)
T KOG1240|consen  101 QYVKHNLYDRLSTRPF--LVLIEKKWIAFQLLKALSQCHK-LGVCHGDIKSENILITS----------------------  155 (1431)
T ss_pred             HHHhhhhhhhhccchH--HHHHHHHHHHHHHHHHHHHHHH-cCccccccccceEEEee----------------------
Confidence            3445688888887654  7888999999999999999999 59999999999999943                      


Q ss_pred             CCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----------c
Q 020248           84 SINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----------A  153 (329)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----------~  153 (329)
                                                                        ...+.|.||....+.--+.          .
T Consensus       156 --------------------------------------------------WNW~~LtDFAsFKPtYLPeDNPadf~fFFD  185 (1431)
T KOG1240|consen  156 --------------------------------------------------WNWLYLTDFASFKPTYLPEDNPADFTFFFD  185 (1431)
T ss_pred             --------------------------------------------------echhhhhcccccCCccCCCCCcccceEEEe
Confidence                                                              3467777776542221110          0


Q ss_pred             cCCCCCCCcchHHhhcC----------C-CCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          154 EEIQTRQYRAPEVILRA----------G-YSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~----------~-~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                      +...-..|.|||.+...          + .+++-||+|+||+++||++ |.+||.-.             .+..+     
T Consensus       186 TSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-------------QL~aY-----  247 (1431)
T KOG1240|consen  186 TSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-------------QLLAY-----  247 (1431)
T ss_pred             cCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-------------HHHhH-----
Confidence            00111258999998752          1 5788999999999999976 78888532             11000     


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             +.-.....+..+.      .-+....+.|+..|++.||++|+||++.|+
T Consensus       248 -----------------------r~~~~~~~e~~Le------~Ied~~~Rnlil~Mi~rdPs~RlSAedyL~  290 (1431)
T KOG1240|consen  248 -----------------------RSGNADDPEQLLE------KIEDVSLRNLILSMIQRDPSKRLSAEDYLQ  290 (1431)
T ss_pred             -----------------------hccCccCHHHHHH------hCcCccHHHHHHHHHccCchhccCHHHHHH
Confidence                                   0000111222221      112447889999999999999999999997

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.70  E-value=2.8e-16  Score=145.22  Aligned_cols=130  Identities=26%  Similarity=0.266  Sum_probs=109.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||+.+|+||.++......+.++..++..|+.|++.+|.++|+ .|++||||||+|++++...                 
T Consensus        98 iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~-~G~iHRDiKp~N~~~g~~~-----------------  159 (322)
T KOG1164|consen   98 IVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHS-KGFIHRDIKPENFVVGQSS-----------------  159 (322)
T ss_pred             EEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHh-cCcccCCcCHHHeeecCCC-----------------
Confidence            5899999999999977666679999999999999999999999 5999999999999995421                 


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc--ccc-------c-
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC--RAN-------K-  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~--~~~-------~-  150 (329)
                                                                        ......+.|+|||++.  +..       . 
T Consensus       160 --------------------------------------------------~~~~~~~~llDfGlar~~~~~~~~~~~~~~  189 (322)
T KOG1164|consen  160 --------------------------------------------------RSEVRTLYLLDFGLARRFKYVGDSGGNLRP  189 (322)
T ss_pred             --------------------------------------------------CcccceEEEEecCCCccccccCCCCccccc
Confidence                                                              0112578999999997  311       1 


Q ss_pred             --c-cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          151 --Q-FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       151 --~-~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                        + .....||..|+++....+...+.+.|+||++.++.++..|..||...
T Consensus       190 ~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~  240 (322)
T KOG1164|consen  190 PRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEAL  240 (322)
T ss_pred             CCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccc
Confidence              1 12345899999999999999999999999999999999999999765

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.67  E-value=9.8e-16  Score=138.37  Aligned_cols=195  Identities=31%  Similarity=0.398  Sum_probs=139.7

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ++++++ |.++.+++..... ..+....+..+..|++.++.|+|+. |++|||+||+||++..                 
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~-~~~hrd~kp~nil~~~-----------------  136 (384)
T COG0515          75 LVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK-GIIHRDIKPENILLDR-----------------  136 (384)
T ss_pred             EEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeecC-----------------
Confidence            478898 8888877776531 1488999999999999999999995 9999999999999933                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCC-ceEEeecCccccccc-------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANK-------  150 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~Dfg~a~~~~~-------  150 (329)
                                                                             .. .++++|||.+.....       
T Consensus       137 -------------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~  161 (384)
T COG0515         137 -------------------------------------------------------DGRVVKLIDFGLAKLLPDPGSTSSI  161 (384)
T ss_pred             -------------------------------------------------------CCCeEEEeccCcceecCCCCccccc
Confidence                                                                   23 689999999854432       


Q ss_pred             --ccccCCCCCCCcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCC--cHH
Q 020248          151 --QFAEEIQTRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PRK  223 (329)
Q Consensus       151 --~~~~~~~~~~y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~--p~~  223 (329)
                        ......++..|++||.+.+   ..++...|+||+|++++++++|..||......   .............+..  ...
T Consensus       162 ~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  238 (384)
T COG0515         162 PALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS---SATSQTLKIILELPTPSLASP  238 (384)
T ss_pred             cccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc---ccHHHHHHHHHhcCCcccccc
Confidence              2356678999999999998   57899999999999999999999997654210   0012222222111110  000


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      .                            ...      ........+.+++.+++..+|..|.+..+...++|.......
T Consensus       239 ~----------------------------~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  284 (384)
T COG0515         239 L----------------------------SPS------NPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLK  284 (384)
T ss_pred             c----------------------------Ccc------ccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhCcccc
Confidence            0                            000      001224578899999999999999999999988777665444


Q ss_pred             hh
Q 020248          304 RD  305 (329)
Q Consensus       304 ~~  305 (329)
                      ..
T Consensus       285 ~~  286 (384)
T COG0515         285 ES  286 (384)
T ss_pred             cc
Confidence            33

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.67  E-value=8.9e-17  Score=160.51  Aligned_cols=152  Identities=31%  Similarity=0.455  Sum_probs=116.6

Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhc
Q 020248           35 LTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIR  114 (329)
Q Consensus        35 l~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (329)
                      +.+++|||+. ||+|||+||+|.++..                                                     
T Consensus       153 vla~Eylh~y-givhrdlkpdnllIT~-----------------------------------------------------  178 (1205)
T KOG0606|consen  153 VLAVEYLHSY-GIVHRDLKPDNLLITS-----------------------------------------------------  178 (1205)
T ss_pred             hHHhHhhccC-CeecCCCCCCcceeee-----------------------------------------------------
Confidence            6789999995 9999999999999943                                                     


Q ss_pred             ccccCCccCCCCCccCCCCCCceEEeecCccccccc------------------ccccCCCCCCCcchHHhhcCCCCccc
Q 020248          115 RASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------------------QFAEEIQTRQYRAPEVILRAGYSFSV  176 (329)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------------------~~~~~~~~~~y~aPE~~~~~~~s~~~  176 (329)
                                         ..++|+.|||++...-.                  .....+||+.|.|||+++...|+..+
T Consensus       179 -------------------mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpv  239 (1205)
T KOG0606|consen  179 -------------------MGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPV  239 (1205)
T ss_pred             -------------------cccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCc
Confidence                               46899999998732210                  11223889999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHH
Q 020248          177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL  256 (329)
Q Consensus       177 DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (329)
                      |.|++|+|+|+.+-|.+||.+..      ..+.+...+......|               +.                  
T Consensus       240 dwwamGiIlyeFLVgcvpffGdt------peelfg~visd~i~wp---------------E~------------------  280 (1205)
T KOG0606|consen  240 DWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEWP---------------EE------------------  280 (1205)
T ss_pred             cHHHHHHHHHHHheeeeeccCCC------HHHHHhhhhhhhcccc---------------cc------------------
Confidence            99999999999999999998752      2222222222111111               10                  


Q ss_pred             hhhcCCChhhHHHHHHHHhhccCCCCCCCc---CHHHHhcCCCcCCCCCCh
Q 020248          257 VDKYRFSETDAREFAEFLVPLLDFTPEKRP---TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       257 ~~~~~~~~~~~~~~~dll~~~L~~dP~~R~---ta~ell~hpwf~~~~~~~  304 (329)
                            ......++.+++.++|+.+|..|.   .+-++.+|+||...+|+.
T Consensus       281 ------dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~LDw~~  325 (1205)
T KOG0606|consen  281 ------DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQLLDWKS  325 (1205)
T ss_pred             ------CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceeecccch
Confidence                  122357899999999999999996   577889999999999983

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.66  E-value=1.8e-16  Score=141.91  Aligned_cols=124  Identities=24%  Similarity=0.378  Sum_probs=87.8

Q ss_pred             cccccchhHHHHHHh---hcCC--CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            2 VLEFLGDSLLRLIKY---SRYK--GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         2 V~e~~g~sL~~~~~~---~~~~--~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +|+-+-++|.+++..   ....  .+.......+..|++..+++||+. |++|+||+|+|+++                 
T Consensus       117 l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~-GlVHgdi~~~nfll-----------------  178 (288)
T PF14531_consen  117 LMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY-GLVHGDIKPENFLL-----------------  178 (288)
T ss_dssp             EEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEE-----------------
T ss_pred             ccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc-ceEecccceeeEEE-----------------
Confidence            455666677777654   2211  144445567779999999999995 99999999999999                 


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCC
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEI  156 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~  156 (329)
                                                                             +....+.|+||+.....+.......
T Consensus       179 -------------------------------------------------------~~~G~v~Lg~F~~~~r~g~~~~~~~  203 (288)
T PF14531_consen  179 -------------------------------------------------------DQDGGVFLGDFSSLVRAGTRYRCSE  203 (288)
T ss_dssp             --------------------------------------------------------TTS-EEE--GGGEEETTEEEEGGG
T ss_pred             -------------------------------------------------------cCCCCEEEcChHHHeecCceeeccC
Confidence                                                                   4467899999998877766544344


Q ss_pred             CCCCCcchHHhhc--------CCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          157 QTRQYRAPEVILR--------AGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       157 ~~~~y~aPE~~~~--------~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                      .+..|.|||....        ..++.+.|.|+||+++|.+.+|..||...
T Consensus       204 ~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  204 FPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             S-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             CCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            5678999998754        24789999999999999999999999765

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.65  E-value=1.2e-16  Score=136.29  Aligned_cols=128  Identities=23%  Similarity=0.344  Sum_probs=107.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||+++|+||++++..-. +.++..++..++-|++.-++|+|.+ +++||||||+|+|++..                  
T Consensus        88 lVMdLLGPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r-~fiHRDIKPdNFLMGlg------------------  147 (341)
T KOG1163|consen   88 LVMDLLGPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLR-NFIHRDIKPDNFLMGLG------------------  147 (341)
T ss_pred             eeeeccCccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhh-ccccccCCccceeeccc------------------
Confidence            699999999999988643 5699999999999999999999996 99999999999999653                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                         -...++.|+|||+|.+...          
T Consensus       148 ---------------------------------------------------rh~~kl~LIDFGLaKky~d~~t~~HIpyr  176 (341)
T KOG1163|consen  148 ---------------------------------------------------RHCNKLYLIDFGLAKKYRDIRTRQHIPYR  176 (341)
T ss_pred             ---------------------------------------------------cccceEEEEeccchhhhccccccccCccc
Confidence                                                               1245789999999965542          


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKS  199 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~  199 (329)
                      .....+||..|.+--...+...|.+-|+=|+|.++..+-.|..||.+..
T Consensus       177 e~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglk  225 (341)
T KOG1163|consen  177 EDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLK  225 (341)
T ss_pred             cCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccc
Confidence            2234477888887766667777899999999999999999999998763

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.65  E-value=8.3e-17  Score=153.47  Aligned_cols=179  Identities=31%  Similarity=0.434  Sum_probs=142.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +++++. |+.|+..+...  ..+.+...+.....++.|++++|+ .|++++|+|++||++                    
T Consensus        74 l~ld~~rgg~lft~l~~~--~~f~~~~~~~~~aelaLald~lh~-l~iiyrd~k~enill--------------------  130 (612)
T KOG0603|consen   74 LILDFLRGGDLFTRLSKE--VMFDELDVAFYLAELALALDHLHK-LGIAYRDYKLENVLL--------------------  130 (612)
T ss_pred             HhhhhcccchhhhccccC--CchHHHHHHHHHHHHHHHHhhcch-hHHHHhcccccceee--------------------
Confidence            356666 66777666655  348888889999999999999999 599999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          .....+++.|||.+...-.... .+|+.
T Consensus       131 ----------------------------------------------------d~~Ghi~~tdfglske~v~~~~-~cgt~  157 (612)
T KOG0603|consen  131 ----------------------------------------------------LLEGHIKLTDFGLSKEAVKEKI-ACGTY  157 (612)
T ss_pred             ----------------------------------------------------cccCccccCCchhhhHhHhhhh-cccch
Confidence                                                                4467899999999854333222 28899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      -|||||++.  .....+|.||+|++.++|++|-.||.+.          .                              
T Consensus       158 eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~~----------~------------------------------  195 (612)
T KOG0603|consen  158 EYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGGD----------T------------------------------  195 (612)
T ss_pred             hhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCchH----------H------------------------------
Confidence            999999998  4577899999999999999999999641          1                              


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChhhhhc
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~~~~~  309 (329)
                                  ...++.....++......+.++++.++..+|..|+-.     .|+.+|++|..++|..-..+.
T Consensus       196 ------------~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i~~~~l~~r~  258 (612)
T KOG0603|consen  196 ------------MKRILKAELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSIDWNELEARS  258 (612)
T ss_pred             ------------HHHHhhhccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchheeeeHhhHhhcC
Confidence                        2233344555777888999999999999999999854     789999999999988444433

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.65  E-value=3.7e-16  Score=138.72  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=110.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||++|+||+|++.-- ++.|+..++..++.|++.-++|+|++ .+|.|||||+|+|++....                
T Consensus       101 LVidLLGPSLEDLFD~C-gR~FSvKTV~miA~Qmi~rie~vH~k-~LIYRDIKPdNFLIGrp~~----------------  162 (449)
T KOG1165|consen  101 LVIDLLGPSLEDLFDLC-GRRFSVKTVAMIAKQMITRIEYVHEK-DLIYRDIKPDNFLIGRPGT----------------  162 (449)
T ss_pred             hhhhhhCcCHHHHHHHh-cCcccHHhHHHHHHHHHHHHHHHHhc-ceeecccCccceeecCCCC----------------
Confidence            79999999999999874 47799999999999999999999996 9999999999999965310                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                         .....|.++|||+|.....+         
T Consensus       163 ---------------------------------------------------k~~n~IhiiDFGmAK~YrDp~TkqHIPYr  191 (449)
T KOG1165|consen  163 ---------------------------------------------------KDANVIHIIDFGMAKEYRDPKTKQHIPYR  191 (449)
T ss_pred             ---------------------------------------------------CCCceEEEEeccchhhhcCccccccCccc
Confidence                                                               22456899999999655432         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                       +.+..||..||+--..+|...|.+-|+=|||-+|++.+.|..||.+.
T Consensus       192 E~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  192 EHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             cccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence             33457899999988888999999999999999999999999999876

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.2e-16  Score=149.67  Aligned_cols=171  Identities=29%  Similarity=0.465  Sum_probs=128.9

Q ss_pred             Cccccc-chhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +.|++| -.+|.+++.... ....+....+.+..|+..|+.|   + |.+|+|+||.||.+..                 
T Consensus       333 I~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k-~~ihrdlkp~nif~~~-----------------  391 (516)
T KOG1033|consen  333 IQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K-GLIHRDLKPSNIFFSD-----------------  391 (516)
T ss_pred             hhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c-cchhhhcccccccccc-----------------
Confidence            468888 789999998543 3447788899999999999999   6 9999999999999932                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--------  150 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--------  150 (329)
                                                                             ..+++|.|||+......        
T Consensus       392 -------------------------------------------------------d~q~kIgDFgl~ts~~~~~~~~~~~  416 (516)
T KOG1033|consen  392 -------------------------------------------------------DDQLKIGDFGLVTSQDKDETVAPAA  416 (516)
T ss_pred             -------------------------------------------------------chhhhhhhhhheeecccCCcccchh
Confidence                                                                   34789999999854432        


Q ss_pred             -ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHh-CCCcHHHHhcC
Q 020248          151 -QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPRKIAIGG  228 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~  228 (329)
                       .++..+||.-||+||.+.+..|+.++||||||++++||+.-   |.        ...+.++.+..+. |.+|+.++   
T Consensus       417 a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~---f~--------T~~er~~t~~d~r~g~ip~~~~---  482 (516)
T KOG1033|consen  417 ASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQ---FS--------TQFERIATLTDIRDGIIPPEFL---  482 (516)
T ss_pred             hhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHH---hc--------cHHHHHHhhhhhhcCCCChHHh---
Confidence             45667889999999999999999999999999999999872   22        1222233332221 22222221   


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                          ...+.-..|+++||...|++||++.+.--|+|.
T Consensus       483 ------------------------------------~d~p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  483 ------------------------------------QDYPEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             ------------------------------------hcCcHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence                                                012345689999999999999998888778775

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.8e-15  Score=137.26  Aligned_cols=171  Identities=20%  Similarity=0.208  Sum_probs=126.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||.-...+|..++-..   ..+.-...-+..|+++|+.|||.+ ||.|||+|.+|||+..+.                 
T Consensus       320 lvMkrY~~tLr~yl~~~---~~s~r~~~~~laQlLEav~hL~~h-gvAhRDlKSDNiL~Eldd-----------------  378 (598)
T KOG4158|consen  320 LVMKRYRQTLREYLWTR---HRSYRTGRVILAQLLEAVTHLHKH-GVAHRDLKSDNILLELDD-----------------  378 (598)
T ss_pred             EehhcchhhHHHHHhcC---CCchHHHHHHHHHHHHHHHHHHHc-cchhhcccccceEEEecC-----------------
Confidence            46666677888888764   378888999999999999999995 999999999999996542                 


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc---------ccccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC---------RANKQ  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~---------~~~~~  151 (329)
                                                                         +...+++++|||-+.         ++...
T Consensus       379 ---------------------------------------------------D~~P~LVvaDFGCcLAd~~hGlqlpy~S~  407 (598)
T KOG4158|consen  379 ---------------------------------------------------DEIPQLVVADFGCCLADDNHGLQLPYESD  407 (598)
T ss_pred             ---------------------------------------------------CCCcEEEEcccceeeeccccccccccccc
Confidence                                                               334578999999752         22233


Q ss_pred             cccCCCCCCCcchHHhhcCC-----C-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          152 FAEEIQTRQYRAPEVILRAG-----Y-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~-----~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                      .....|....||||+....+     . -.+.|.|+.|.+.||++....||.+...-       ++               
T Consensus       408 ~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem-------~L---------------  465 (598)
T KOG4158|consen  408 EVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEM-------LL---------------  465 (598)
T ss_pred             cccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchh-------ee---------------
Confidence            34456777899999987542     1 14799999999999999999999764100       00               


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHH-hhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHH
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL-VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ  290 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~e  290 (329)
                                               +...+. .+...++..++..+.+++..+|+.||++|+++.-
T Consensus       466 -------------------------~~r~Yqe~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~i  506 (598)
T KOG4158|consen  466 -------------------------DTRTYQESQLPALPSRVPPVARQLVFDLLKRDPSKRVSPNI  506 (598)
T ss_pred             -------------------------chhhhhhhhCCCCcccCChHHHHHHHHHhcCCccccCCccH
Confidence                                     000011 1122467788899999999999999999999543

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=1e-12  Score=133.53  Aligned_cols=125  Identities=26%  Similarity=0.384  Sum_probs=104.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ||+||. -++|.+++...  +.+++..+.++..|++.-+.+||. ++||||||||+|+++....+               
T Consensus       771 lv~ey~~~Gtlld~~N~~--~~m~e~lv~~~~~qml~ive~lH~-~~IIHgDiKPDNfll~~~~~---------------  832 (974)
T KOG1166|consen  771 LVSEYSPYGTLLDLINTN--KVMDEYLVMFFSCQMLRIVEHLHA-MGIIHGDIKPDNFLLRREIC---------------  832 (974)
T ss_pred             eeeeccccccHHHhhccC--CCCCchhhhHHHHHHHHHHHHHHh-cceecccCCcceeEeecccC---------------
Confidence            688998 78999999954  459999999999999999999999 69999999999999955321               


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----ccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~  154 (329)
                                                                        .++...-++|||||.+.-+.     ..+..
T Consensus       833 --------------------------------------------------~~~~~~~l~lIDfG~siDm~lfp~~~~F~~  862 (974)
T KOG1166|consen  833 --------------------------------------------------ADSDSKGLYLIDFGRSIDMKLFPDGTKFKA  862 (974)
T ss_pred             --------------------------------------------------CCCcccceEEEecccceeeeEcCCCcEEee
Confidence                                                              00223468999999995443     35556


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDM  193 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~  193 (329)
                      .++|-.+-.+|+..|++|++..|.|.|+-+++.|+.|.+
T Consensus       863 ~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  863 VWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             eeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999865

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.36  E-value=2.7e-12  Score=111.59  Aligned_cols=170  Identities=19%  Similarity=0.290  Sum_probs=119.5

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC-c-cccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG-I-IHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g-i-iH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +..|| -+||+.++......-.+..++..++..++.|++|||+ .. + -.--++...+++..                 
T Consensus       265 isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhs-lep~ipr~~lns~hvmide-----------------  326 (448)
T KOG0195|consen  265 ISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHS-LEPMIPRFYLNSKHVMIDE-----------------  326 (448)
T ss_pred             eeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhh-cchhhhhhhcccceEEecc-----------------
Confidence            55688 6899999998866557788999999999999999998 33 2 23345666666632                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT  158 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~  158 (329)
                                                                           +...++..+|-.++|..    ......
T Consensus       327 -----------------------------------------------------dltarismad~kfsfqe----~gr~y~  349 (448)
T KOG0195|consen  327 -----------------------------------------------------DLTARISMADTKFSFQE----VGRAYS  349 (448)
T ss_pred             -----------------------------------------------------hhhhheecccceeeeec----cccccC
Confidence                                                                 12335566666665432    233567


Q ss_pred             CCCcchHHhhcCCCC---ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          159 RQYRAPEVILRAGYS---FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s---~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +.|++||.+...+-.   ..+|+|||++++|||.|..+||...++      .+.-..| -+-|.                
T Consensus       350 pawmspealqrkped~n~raadmwsfaillwel~trevpfadlsp------mecgmki-alegl----------------  406 (448)
T KOG0195|consen  350 PAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSP------MECGMKI-ALEGL----------------  406 (448)
T ss_pred             cccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCc------hhhhhhh-hhccc----------------
Confidence            899999999877533   579999999999999999999986531      1111111 00000                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  292 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell  292 (329)
                                             +-..+.+.+.....||.-|+.-||.+||.++.++
T Consensus       407 -----------------------rv~ippgis~hm~klm~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  407 -----------------------RVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             -----------------------cccCCCCccHHHHHHHHHHhcCCCCcCCCcceeh
Confidence                                   1124556677888999999999999999987653

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.28  E-value=1.1e-11  Score=118.24  Aligned_cols=182  Identities=22%  Similarity=0.241  Sum_probs=124.6

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |-+|| .++|++.+.... ..++.-....+.+.|+.||.|+|....-.||-++..|+++                     
T Consensus        25 i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClv---------------------   82 (484)
T KOG1023|consen   25 IWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLV---------------------   82 (484)
T ss_pred             EEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcCcceeeeeecccccee---------------------
Confidence            56788 789999999843 3477778889999999999999985334999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                         +..-.+||.|||+.......     ....
T Consensus        83 ---------------------------------------------------d~~w~lklt~~Gl~~~~~~~~~~~~~~~~  111 (484)
T KOG1023|consen   83 ---------------------------------------------------DSRWVLKLTDFGLNSLLEETAEPEAHHPI  111 (484)
T ss_pred             ---------------------------------------------------eeeEEEEechhhhcccccccccccccchh
Confidence                                                               33557999999988554321     1111


Q ss_pred             CCCCCCcchHHhhcCC-------CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          156 IQTRQYRAPEVILRAG-------YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~-------~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      ....-|.|||.+.+..       .+.+.|+||+|++++|+++..-||........  ..+.+..+.. .|..+       
T Consensus       112 ~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~--~~eii~~~~~-~~~~~-------  181 (484)
T KOG1023|consen  112 RKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVED--PDEIILRVKK-GGSNP-------  181 (484)
T ss_pred             HHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCC--hHHHHHHHHh-cCCCC-------
Confidence            1133589999987641       46789999999999999999999976532111  1122222211 11100       


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                      .+   .....        ..+....+..++++||.-+|++||+++.+-.
T Consensus       182 ----------------~r---P~i~~--------~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~  219 (484)
T KOG1023|consen  182 ----------------FR---PSIEL--------LNELPPELLLLVARCWEEIPEKRPSIEQIRS  219 (484)
T ss_pred             ----------------cC---cchhh--------hhhcchHHHHHHHHhcccChhhCccHHHHHh
Confidence                            00   00000        0022347899999999999999999998743

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.27  E-value=4e-12  Score=108.56  Aligned_cols=56  Identities=25%  Similarity=0.367  Sum_probs=46.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYL-HRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~l-H~~~giiH~Dlk~~Nil~   59 (329)
                      |||||+ |.++.......  ..++...+..++.|++.+|.++ |+ .||+||||||+||++
T Consensus        94 iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H~-~giiHrDlkP~NIli  151 (190)
T cd05147          94 LVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQD-CRLVHADLSEYNLLY  151 (190)
T ss_pred             EEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHHh-CCcccCCCCHHHEEE
Confidence            689999 55555443322  4589999999999999999999 67 599999999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.27  E-value=1.8e-12  Score=112.87  Aligned_cols=49  Identities=20%  Similarity=0.453  Sum_probs=40.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      |||||+ |.+|.++..      ++.    ....+++.++..+|+. |++|||+||+|+++.
T Consensus       120 lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~-gi~H~Dikp~Nili~  169 (232)
T PRK10359        120 MLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQH-GMVSGDPHKGNFIVS  169 (232)
T ss_pred             EEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHc-CCccCCCChHHEEEe
Confidence            589999 889987632      332    2456999999999995 999999999999993

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.25  E-value=1.7e-11  Score=105.04  Aligned_cols=116  Identities=21%  Similarity=0.188  Sum_probs=82.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCC-CCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL-KPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dl-k~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ++|||+ |.+|......        . ...++.|++.+|.++|+. ||+|||| ||+||+++.                 
T Consensus        75 lvmeyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~lH~~-GIvHrDL~kp~NILv~~-----------------  127 (218)
T PRK12274         75 LDRSYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQLHRC-GVAHNDLAKEANWLVQE-----------------  127 (218)
T ss_pred             EEEeeecCccHHhhhhh--------h-hHHHHHHHHHHHHHHHHC-cCccCCCCCcceEEEcC-----------------
Confidence            589998 8888654321        1 134778999999999995 9999999 799999932                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc-----
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----  153 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~-----  153 (329)
                                                                             ...++|+|||.+........     
T Consensus       128 -------------------------------------------------------~g~i~LIDFG~A~~~~~~~~~~r~L  152 (218)
T PRK12274        128 -------------------------------------------------------DGSPAVIDFQLAVRGNPRARWMRLL  152 (218)
T ss_pred             -------------------------------------------------------CCCEEEEECCCceecCCcchHHHHH
Confidence                                                                   34689999999964332210     


Q ss_pred             -----------cCCCCCCCcchHHhhcC-CCC-ccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          154 -----------EEIQTRQYRAPEVILRA-GYS-FSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       154 -----------~~~~~~~y~aPE~~~~~-~~s-~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                                 ...+++.|+.|+..... ..+ ...+..+.|+-+|.++|+..++-+.
T Consensus       153 ~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        153 AREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence                       11346677788754432 344 4566669999999999999877543

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.5e-12  Score=128.90  Aligned_cols=181  Identities=24%  Similarity=0.335  Sum_probs=133.1

Q ss_pred             ccccc-chhHHHHH-HhhcCCCcchHHHHHHHHHHHHHHHHHH-hhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            2 VLEFL-GDSLLRLI-KYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         2 V~e~~-g~sL~~~~-~~~~~~~l~~~~~~~i~~qll~al~~lH-~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ++++. |+++++.+ .... ...+...+...+.|+..++.|+| . .++.|+|+||+|.++...                
T Consensus        99 ~~~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~~-~~~~h~~ikP~n~~l~~s----------------  160 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHPE-NGVTHRDIKPSNSLLDES----------------  160 (601)
T ss_pred             ccCcccccccccccccCCc-cCCCCcchhhhhhhhccCccccCcc-cccccCCCCCccchhccC----------------
Confidence            45676 88888877 3332 24777888999999999999999 7 599999999999998432                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCC-ceEEeecCccccccc------c
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDM-RCKVVDFGNACRANK------Q  151 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~Dfg~a~~~~~------~  151 (329)
                                                                              . ..++.|||+|..+..      .
T Consensus       161 --------------------------------------------------------~~~l~~~df~~At~~~~~~g~~~~  184 (601)
T KOG0590|consen  161 --------------------------------------------------------GSALKIADFGLATAYRNKNGAERS  184 (601)
T ss_pred             --------------------------------------------------------CCcccCCCchhhccccccCCccee
Confidence                                                                    2 578899999844332      2


Q ss_pred             cccCCC-CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 FAEEIQ-TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 ~~~~~~-~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      .....| ++.|.|||...+. ......|+||+|+++..+++|..|+.......                           
T Consensus       185 ~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~---------------------------  237 (601)
T KOG0590|consen  185 LKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD---------------------------  237 (601)
T ss_pred             eecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccccc---------------------------
Confidence            334467 8999999999985 45788999999999999999999997653211                           


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                        ..|+......   .           ...............+++++++..+|+.|.+..++-.+||+..
T Consensus       238 --~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  238 --GRYSSWKSNK---G-----------RFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             --ccceeecccc---c-----------ccccCccccCChhhhhcccccccCCchhccccccccccccccc
Confidence              0010000000   0           0001123334567889999999999999999999999999999

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.23  E-value=8.3e-12  Score=116.40  Aligned_cols=49  Identities=33%  Similarity=0.400  Sum_probs=39.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCC-CCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDL-KPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dl-k~~Nil~   59 (329)
                      |||||| |++|...   ..   ..   ...++.|++.||.|||+. ||+|||| ||+||++
T Consensus        95 LVmE~~~G~~L~~~---~~---~~---~~~~~~~i~~aL~~lH~~-gIiHrDL~KP~NILv  145 (365)
T PRK09188         95 LVRGWTEGVPLHLA---RP---HG---DPAWFRSAHRALRDLHRA-GITHNDLAKPQNWLM  145 (365)
T ss_pred             EEEEccCCCCHHHh---Cc---cc---hHHHHHHHHHHHHHHHHC-CCeeCCCCCcceEEE
Confidence            689999 8888632   11   11   146789999999999995 9999999 9999999

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.19  E-value=2.4e-11  Score=103.73  Aligned_cols=55  Identities=29%  Similarity=0.460  Sum_probs=45.5

Q ss_pred             Cccccc-chhHHH-HHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLR-LIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~-~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~   59 (329)
                      |||||+ |.++.. .+..   ..++...+..++.|++.++.++|+ . ||+||||||+||++
T Consensus        94 lVmE~~~g~~~~~~~l~~---~~~~~~~~~~i~~~l~~~l~~lH~~~-givHrDlkP~NIll  151 (190)
T cd05145          94 LVMEFIGDDGSPAPRLKD---VPLEEEEAEELYEQVVEQMRRLYQEA-GLVHGDLSEYNILY  151 (190)
T ss_pred             EEEEEecCCCchhhhhhh---ccCCHHHHHHHHHHHHHHHHHHHHhC-CEecCCCChhhEEE
Confidence            689999 554433 3332   347888999999999999999998 6 99999999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.00  E-value=3.2e-10  Score=114.35  Aligned_cols=214  Identities=22%  Similarity=0.247  Sum_probs=139.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC-----CCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR-----SGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~-----~~~   74 (329)
                      |||+|+ |++|.+.+...  .+.+.+-++.....+.++.++||+. .+.|+|++|.|.+....- +......     .++
T Consensus       881 L~~~~~~~~~~~Skl~~~--~~~saepaRs~i~~~vqs~e~L~s~-~r~h~~~~p~~~l~~~~g-h~~l~~~~t~~~vg~  956 (1205)
T KOG0606|consen  881 LVGHYLNGGDLPSKLHNS--GCLSAEPARSPILERVQSLESLHSS-LRKHRDLKPDSLLIAYDG-HRPLTDFGTLSKVGL  956 (1205)
T ss_pred             hhhHHhccCCchhhhhcC--CCcccccccchhHHHHhhhhccccc-hhhcccccccchhhcccC-CcccCcccccccccc
Confidence            578888 67787777765  3577777888888899999999984 689999999999973320 0000000     000


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----  149 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----  149 (329)
                      .+...+..                                                 +.......-+++......     
T Consensus       957 ~~p~~~~s-------------------------------------------------g~~~~~~~~~~~~~~~~~~l~~~  987 (1205)
T KOG0606|consen  957 IPPTTDLS-------------------------------------------------GPSSSGTPRRLSRSERRPQLSAD  987 (1205)
T ss_pred             ccCcCCcc-------------------------------------------------cccccCccccccccccccccccc
Confidence            00000000                                                 000011111111111100     


Q ss_pred             --cccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          150 --KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       150 --~~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                        .......+|+.|.+||..++..-+..+|.|++|+++++.++|.+||....++      ...                 
T Consensus       988 ~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq------~~f----------------- 1044 (1205)
T KOG0606|consen  988 EARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQ------QIF----------------- 1044 (1205)
T ss_pred             hhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchh------hhh-----------------
Confidence              1223457799999999999998899999999999999999999999876321      111                 


Q ss_pred             CCCCccccCccCchhhhccccccchhHHHhhhcC---CChhhHHHHHHHHhhccCCCCCCCcCHH---HHhcCCCcCCCC
Q 020248          228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYR---FSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHPWLSLRN  301 (329)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dll~~~L~~dP~~R~ta~---ell~hpwf~~~~  301 (329)
                                               +.++.+..+   .+........+++.++|..+|.+|..+.   ++-.|++|+..+
T Consensus      1045 -------------------------~ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~ 1099 (1205)
T KOG0606|consen 1045 -------------------------ENILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVD 1099 (1205)
T ss_pred             -------------------------hccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcccccccccCCccCCCC
Confidence                                     111111111   2233456788999999999999999988   888999999999


Q ss_pred             CChhhhhcCCCccc
Q 020248          302 STRDETKNKSNVEK  315 (329)
Q Consensus       302 ~~~~~~~~~~~~~~  315 (329)
                      |.....+....+-.
T Consensus      1100 ~~~l~~q~~~~~p~ 1113 (1205)
T KOG0606|consen 1100 WENLALQKAEFVPQ 1113 (1205)
T ss_pred             ccccccccCccCCC
Confidence            98887776665433

>smart00090 RIO RIO-like kinase

Probab=98.98  E-value=3.1e-10  Score=100.28  Aligned_cols=56  Identities=34%  Similarity=0.451  Sum_probs=45.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC-ccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG-IIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g-iiH~Dlk~~Nil~   59 (329)
                      |||||+ |.+|.......  ..+....+..++.|++.++.+||+. | ++||||||+||++
T Consensus       125 lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-g~iiH~Dikp~NIli  182 (237)
T smart00090      125 LVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLYKE-GELVHGDLSEYNILV  182 (237)
T ss_pred             EEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHHhc-CCEEeCCCChhhEEE
Confidence            689999 65666554322  2356667789999999999999995 9 9999999999999

>PRK10345 hypothetical protein; Provisional

Probab=98.91  E-value=2e-09  Score=93.18  Aligned_cols=55  Identities=27%  Similarity=0.413  Sum_probs=44.3

Q ss_pred             Ccccccc---hhHHHHHHhhcCCCcchHHHHHHHHHHHHHH-HHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFLG---DSLLRLIKYSRYKGLELNKVREICKYILTGL-DYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~g---~sL~~~~~~~~~~~l~~~~~~~i~~qll~al-~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      +||||+|   ++|.+++...   .+++.  ..++.|++.++ +|||+. +|+||||||+|||++.
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~-~IvhrDlKp~NILl~~  140 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDN-RIVTMELKPQNILCQR  140 (210)
T ss_pred             EEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHC-CEeecCCCHHHEEEec
Confidence            4789955   8999999763   25555  35678888887 999995 9999999999999953

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.82  E-value=3.8e-09  Score=90.66  Aligned_cols=50  Identities=34%  Similarity=0.499  Sum_probs=41.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      +||||+ |.+|..+...        .....++.+++.++.++|+. |++||||||+||++
T Consensus       108 lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~-gi~H~Dl~p~Nill  158 (198)
T cd05144         108 VVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKH-GIIHGDLSEFNILV  158 (198)
T ss_pred             EEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHC-CCCcCCCCcccEEE
Confidence            589999 7788654321        34567889999999999994 99999999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.80  E-value=7.5e-09  Score=91.58  Aligned_cols=52  Identities=29%  Similarity=0.439  Sum_probs=41.9

Q ss_pred             Cccccc-c-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      +|||++ | .+|.+++...   .++..    .+.||+.+|.+||+. ||+|+||||.||++.
T Consensus       123 lV~e~l~G~~~L~~~l~~~---~l~~~----~~~~i~~~l~~lH~~-GI~HrDlkp~NILv~  176 (239)
T PRK01723        123 ILIERIEGARDLVALLQEA---PLSEE----QWQAIGQLIARFHDA-GVYHADLNAHNILLD  176 (239)
T ss_pred             EEEEecCCCCCHHHHHhcC---CCCHH----HHHHHHHHHHHHHHC-CCCCCCCCchhEEEc
Confidence            588999 5 5898887653   34443    367899999999995 999999999999993

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.78  E-value=9.5e-09  Score=87.99  Aligned_cols=49  Identities=33%  Similarity=0.556  Sum_probs=42.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      +||||+ |.+|.+++....   .      .++.|++.+|.++|+ .|++|||++|+||++
T Consensus        74 lv~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~-~gi~H~Dl~~~Nil~  123 (199)
T TIGR03724        74 IVMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLHK-AGIVHGDLTTSNIIV  123 (199)
T ss_pred             EEEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHHH-CCeecCCCCcceEEE
Confidence            589999 899998876531   1      789999999999999 499999999999999

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.78  E-value=9.7e-09  Score=88.72  Aligned_cols=52  Identities=35%  Similarity=0.584  Sum_probs=46.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      +||||+ |.+|.+++....     . ....++.+++.+|.++|+. |++|||++|.||++
T Consensus        76 lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~-~i~H~Dl~p~Nil~  128 (211)
T PRK14879         76 IVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSA-GIIHGDLTTSNMIL  128 (211)
T ss_pred             EEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhC-CcccCCCCcccEEE
Confidence            589999 899999987532     1 7888999999999999995 99999999999999

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.74  E-value=2.6e-08  Score=89.26  Aligned_cols=59  Identities=31%  Similarity=0.558  Sum_probs=49.1

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~   60 (329)
                      ++.||| -+++..++++.++  ..+.....++||.||+.||.|||+ +.  ++|+.+....|...
T Consensus       149 Fiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~PpiihgnlTc~tifiq  212 (458)
T KOG1266|consen  149 FITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPPIIHGNLTCDTIFIQ  212 (458)
T ss_pred             EEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCccccCCcchhheeec
Confidence            357899 7899998887542  448888999999999999999998 55  89999988888873

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=1.8e-08  Score=96.72  Aligned_cols=177  Identities=23%  Similarity=0.244  Sum_probs=126.0

Q ss_pred             ccccchhHHHHHHhhcCCCcchHHHHHHHHHHHH----HHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            3 LEFLGDSLLRLIKYSRYKGLELNKVREICKYILT----GLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         3 ~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~----al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      .|+||.+|.+++..-. .-++.+.+.....+...    ||.++|+. +++|-|+||.||.+..+                
T Consensus       197 tE~~~~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~al~~~hs~-~~~~~~~kp~~i~~~~~----------------  258 (524)
T KOG0601|consen  197 TELCGESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTALSHLHSN-NIVHDDLKPANIFTTSD----------------  258 (524)
T ss_pred             eccccchhHHhhhccc-ccCCchhhhhHHhhhhhcccccccccCCC-cccccccchhheecccc----------------
Confidence            5788989999888753 34788899999999999    99999995 99999999999999432                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------  152 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------  152 (329)
                                                                             ...++++|||.........      
T Consensus       259 -------------------------------------------------------~~s~~~~df~~v~~i~~~~~~~~~~  283 (524)
T KOG0601|consen  259 -------------------------------------------------------WTSCKLTDFGLVSKISDGNFSSVFK  283 (524)
T ss_pred             -------------------------------------------------------cceeecCCcceeEEccCCcccccee
Confidence                                                                   1567888888775544211      


Q ss_pred             --ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          153 --AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       153 --~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                        ....+..-|++||...+. ++..+|++++|-++.+-+++..++....-                         ..|..
T Consensus       284 ~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~g~~-------------------------~~W~~  337 (524)
T KOG0601|consen  284 VSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSVGKN-------------------------SSWSQ  337 (524)
T ss_pred             eeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccCCCC-------------------------CCccc
Confidence              111455679999987665 78899999999999999999887765410                         01111


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .+.++..               .+...       .-...+...+..|+..+|-.|+++.++++|+++...
T Consensus       338 ~r~~~ip---------------~e~~~-------~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~  385 (524)
T KOG0601|consen  338 LRQGYIP---------------LEFCE-------GGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSK  385 (524)
T ss_pred             cccccCc---------------hhhhc-------CcchhhhhHHHHhcCcchhhhhHHHHHhccccccch
Confidence            1111100               00100       012233348889999999999999999999988743

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.67  E-value=2.5e-08  Score=98.59  Aligned_cols=48  Identities=27%  Similarity=0.565  Sum_probs=43.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      |||||+ |++|.+++.          ....++.|++.+|.+||+. |++|||+||+||++
T Consensus       413 lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~-giiHrDlkp~NILl  461 (535)
T PRK09605        413 IVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKA-GIVHGDLTTSNFIV  461 (535)
T ss_pred             EEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhC-CCccCCCChHHEEE
Confidence            589999 899998876          2467899999999999994 99999999999999

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.64  E-value=3.5e-08  Score=83.59  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeee
Q 020248           25 NKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLV   60 (329)
Q Consensus        25 ~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~   60 (329)
                      ..+..++.+++.++.++|. . |++|+||||+||+++
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~-~ivH~Dl~p~Nili~  149 (187)
T cd05119         114 EDPEELYDQILELMRKLYREA-GLVHGDLSEYNILVD  149 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhcc-CcCcCCCChhhEEEE
Confidence            6688899999999999998 6 999999999999993

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.62  E-value=1.6e-08  Score=98.55  Aligned_cols=164  Identities=21%  Similarity=0.274  Sum_probs=111.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHH
Q 020248           22 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLK  101 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (329)
                      ...+.+..-+.+++.|+.|+|...+++|+.|.|++|.++.                                        
T Consensus        96 ~aTe~~f~nl~~v~dgl~flh~sAk~VH~ni~p~~i~~na----------------------------------------  135 (700)
T KOG2137|consen   96 KATEDGFANLGNVADGLAFLHRSAKVVHGNIQPEAIVVNA----------------------------------------  135 (700)
T ss_pred             hcccHhhhhhhcccchhhhhccCcceeecccchhheeecc----------------------------------------
Confidence            3444555566777799999999889999999999999933                                        


Q ss_pred             HHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------c----c-CCCCCCCcchHHhhc
Q 020248          102 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------A----E-EIQTRQYRAPEVILR  169 (329)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------~----~-~~~~~~y~aPE~~~~  169 (329)
                                                      ....|++.|+++.....+.       .    . ..-...|.|||.+.+
T Consensus       136 --------------------------------~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  136 --------------------------------NGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             --------------------------------CcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence                                            3345677666653222100       0    0 011346999999999


Q ss_pred             CCCCccchHHHHHHHHHHHH-hCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhcccc
Q 020248          170 AGYSFSVDMWSFACTAFELA-TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK  248 (329)
Q Consensus       170 ~~~s~~~DiwslG~il~~l~-~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (329)
                      ...+.++|++|+||.+|.+. .|...+...+..       .........+.                             
T Consensus       184 ~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~-------~~~~~~~~~~~-----------------------------  227 (700)
T KOG2137|consen  184 TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGL-------LSYSFSRNLLN-----------------------------  227 (700)
T ss_pred             ccccccccceeeeeEEEEEecCCcchhhccCCc-------chhhhhhcccc-----------------------------
Confidence            88899999999999999988 566666543210       00000000000                             


Q ss_pred             ccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                            .  .....+...+.++++=|.+++..++..||++.++...|||.+..
T Consensus       228 ------~--~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~~  272 (700)
T KOG2137|consen  228 ------A--GAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDPG  272 (700)
T ss_pred             ------c--ccccccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCch
Confidence                  0  01112355577888889999999999999999999999999764

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.56  E-value=8e-08  Score=81.99  Aligned_cols=56  Identities=21%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             Ccccccchh-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCceee
Q 020248            1 MVLEFLGDS-LLRLIKYSRYKGLELNKVREICKYILTGLDYL-HRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~g~s-L~~~~~~~~~~~l~~~~~~~i~~qll~al~~l-H~~~giiH~Dlk~~Nil~   59 (329)
                      |||||+|++ +..-....  ..++...+..+..+++.+|..+ |. .|+|||||++.||++
T Consensus       101 lvME~Ig~~~~~~~~Lkd--~~~~~~~~~~i~~~i~~~l~~l~H~-~glVHGDLs~~NIL~  158 (197)
T cd05146         101 LVMSFIGDDQVPAPKLKD--AKLNDEEMKNAYYQVLSMMKQLYKE-CNLVHADLSEYNMLW  158 (197)
T ss_pred             EEEEEcCCCCccchhhhc--cccCHHHHHHHHHHHHHHHHHHHHh-CCeecCCCCHHHEEE
Confidence            689999542 32111111  1255566778889999999999 77 699999999999999

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.39  E-value=4.4e-06  Score=77.72  Aligned_cols=104  Identities=14%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHH
Q 020248           22 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLK  101 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (329)
                      ...+...++.+.|+.+.+.||. .|..-||++++|+|++.                                        
T Consensus       114 ~~w~fllrvaRnlA~aFA~lH~-~Gh~vGDVn~~~~lVsd----------------------------------------  152 (637)
T COG4248         114 CAWDFLLRVARNLASAFATLHE-HGHVVGDVNQNSFLVSD----------------------------------------  152 (637)
T ss_pred             cccHHHHHHHHHHHHHHHHHHh-cCCcccccCccceeeec----------------------------------------
Confidence            6778899999999999999999 49999999999999933                                        


Q ss_pred             HHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc--cccccccccCCCCCCCcchHHhh-----cCCCCc
Q 020248          102 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVIL-----RAGYSF  174 (329)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a--~~~~~~~~~~~~~~~y~aPE~~~-----~~~~s~  174 (329)
                                                      ...|+|+|-..-  ......+...+|...|.|||.-.     +..-+.
T Consensus       153 --------------------------------~~~V~LVdsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~  200 (637)
T COG4248         153 --------------------------------DSKVVLVDSDSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTA  200 (637)
T ss_pred             --------------------------------CceEEEEcccceeeccCCceEecccCccccCCHHHhccccccccCCCc
Confidence                                            456777764432  11123345567788999999743     445567


Q ss_pred             cchHHHHHHHHHHHHhC-CcCCCCC
Q 020248          175 SVDMWSFACTAFELATG-DMLFAPK  198 (329)
Q Consensus       175 ~~DiwslG~il~~l~~g-~~pf~~~  198 (329)
                      ..|.+.||+++++++.| .+||.+.
T Consensus       201 ~hD~FGLavLiF~lL~ggrHPysGI  225 (637)
T COG4248         201 NHDNFGLAVLIFHLLFGGRHPYSGI  225 (637)
T ss_pred             cccchhHHHHHHHHHhcCCCCCCcc
Confidence            89999999999999876 9999876

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=2.3e-07  Score=89.12  Aligned_cols=172  Identities=23%  Similarity=0.199  Sum_probs=116.0

Q ss_pred             cccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            3 LEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         3 ~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      -||| |+++.......+  .+.+...+.+..|++.++.++|++ .++|+|++|+||+...+                   
T Consensus       345 ~e~~~~~s~~l~~~~~~--~~d~~~~~~~~~q~~~~l~~i~s~-~~~~~d~~psni~i~~~-------------------  402 (524)
T KOG0601|consen  345 LEFCEGGSSSLRSVTSQ--MLDEDPRLRLTAQILTALNVIHSK-LFVHLDVKPSNILISND-------------------  402 (524)
T ss_pred             hhhhcCcchhhhhHHHH--hcCcchhhhhHHHHHhccccccch-hhhcccccccceeeccc-------------------
Confidence            3678 666665554443  388899999999999999999995 99999999999999432                   


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCC-CCC
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQ  160 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~-~~~  160 (329)
                                                                        +  ...++.|||.+.++.-......+ ...
T Consensus       403 --------------------------------------------------~--~~~~~~~~~~~t~~~~~~~~~~~~~r~  430 (524)
T KOG0601|consen  403 --------------------------------------------------G--FFSKLGDFGCWTRLAFSSGVFHHIDRL  430 (524)
T ss_pred             --------------------------------------------------h--hhhhccccccccccceecccccccccc
Confidence                                                              0  34567777776432221112222 223


Q ss_pred             C-cchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          161 Y-RAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       161 y-~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      | .++.......+..+.|++|||..+.+.+++..+-....         +.                             
T Consensus       431 ~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~---------~~-----------------------------  472 (524)
T KOG0601|consen  431 YPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGV---------QS-----------------------------  472 (524)
T ss_pred             cccchhhccccccccccccccccccccccccCcccCcccc---------cc-----------------------------
Confidence            4 24444445678899999999999999999877544321         00                             


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                   ..+..+..........++..+...+...++..|+.+.++..|.=|..
T Consensus       473 -------------~~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  473 -------------LTIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             -------------eeeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcccchhhh
Confidence                         01111111122233467788889999999999999999998875543

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.27  E-value=1.9e-06  Score=77.39  Aligned_cols=59  Identities=24%  Similarity=0.128  Sum_probs=48.7

Q ss_pred             Cccccc-ch-hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~-sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      ||||++ |. +|.+++........+......++.+++..+.-||. .||+|||++++||++.
T Consensus       112 LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~-~Gi~HgDL~~~NiLl~  172 (268)
T PRK15123        112 IITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHA-AGINHRDCYICHFLLH  172 (268)
T ss_pred             EEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHH-CcCccCCCChhhEEEe
Confidence            589999 44 79999864322345667788999999999999999 4999999999999994

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.25  E-value=3.3e-06  Score=70.34  Aligned_cols=61  Identities=31%  Similarity=0.413  Sum_probs=47.8

Q ss_pred             Cccccc-c-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecC
Q 020248            1 MVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST   62 (329)
Q Consensus         1 lV~e~~-g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~   62 (329)
                      |+|||. | .++.+++...............+++.|-+.+.-||.. ++|||||..+||++..+
T Consensus        87 i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n-diiHGDLTTSNill~~~  149 (229)
T KOG3087|consen   87 IYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN-DIIHGDLTTSNILLRSD  149 (229)
T ss_pred             EEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC-CeecccccccceEEecC
Confidence            579999 4 4888888876543333333368889999999999995 99999999999999543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.22  E-value=1.2e-06  Score=70.44  Aligned_cols=51  Identities=29%  Similarity=0.503  Sum_probs=38.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhh--CCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE--LGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~--~giiH~Dlk~~Nil~~   60 (329)
                      ++|||+ |..+..+         +......+..+++.++.++|..  .+++|+|++|+||++.
T Consensus        70 ~v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~  123 (155)
T cd05120          70 LLMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVD  123 (155)
T ss_pred             EEEEecCCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEE
Confidence            367777 5555433         3456677889999999999972  1699999999999993

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.21  E-value=2.3e-06  Score=71.46  Aligned_cols=50  Identities=28%  Similarity=0.537  Sum_probs=39.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      |+|||. |..|.+.+...     .    ..++..+=.-+.-||. .|||||||.++|+++.
T Consensus        76 I~me~I~G~~lkd~l~~~-----~----~~~~r~vG~~vg~lH~-~givHGDLTtsNiIl~  126 (204)
T COG3642          76 IVMEYIEGELLKDALEEA-----R----PDLLREVGRLVGKLHK-AGIVHGDLTTSNIILS  126 (204)
T ss_pred             EEEEEeCChhHHHHHHhc-----c----hHHHHHHHHHHHHHHh-cCeecCCCccceEEEe
Confidence            589999 78888888875     2    3345555556677998 5999999999999994

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.20  E-value=8.8e-07  Score=75.23  Aligned_cols=55  Identities=35%  Similarity=0.556  Sum_probs=36.5

Q ss_pred             Ccccccc--hh-HHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH-HhhCCccccCCCCCceeee
Q 020248            1 MVLEFLG--DS-LLRLIKYSRYKGLELNKVREICKYILTGLDYL-HRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~g--~s-L~~~~~~~~~~~l~~~~~~~i~~qll~al~~l-H~~~giiH~Dlk~~Nil~~   60 (329)
                      |||||++  +. +..+....    ++......++.+++..+..+ |. +|++|||+.+.||++.
T Consensus        83 ivME~I~~~G~~~~~l~~~~----~~~~~~~~~~~~il~~~~~~~~~-~givHGDLs~~NIlv~  141 (188)
T PF01163_consen   83 IVMEYIGEDGVPLPRLKDVD----LSPEEPKELLEEILEEIIKMLHK-AGIVHGDLSEYNILVD  141 (188)
T ss_dssp             EEEE--EETTEEGGCHHHCG----GGGSTHHHHHHHHHHHHHHHHHC-TTEEESS-STTSEEEE
T ss_pred             EEEEecCCCccchhhHHhcc----ccchhHHHHHHHHHHHHHHHHHh-cCceecCCChhhEEee
Confidence            6899997  43 33322222    33456778888898877664 66 6999999999999993

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.17  E-value=2.5e-06  Score=82.15  Aligned_cols=54  Identities=26%  Similarity=0.493  Sum_probs=39.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHH-HHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILT-GLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~-al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      |||||+ |.+|.++...... +.   ....++.+++. .+..+|. .|++|+|+||.||++
T Consensus       235 LvmE~i~G~~L~~~~~~~~~-~~---~~~~ia~~~~~~~l~ql~~-~g~~H~D~hPgNilv  290 (437)
T TIGR01982       235 LTMEWIDGIPLSDIAALDEA-GL---DRKALAENLARSFLNQVLR-DGFFHADLHPGNIFV  290 (437)
T ss_pred             EEEEeECCcccccHHHHHhc-CC---CHHHHHHHHHHHHHHHHHh-CCceeCCCCcccEEE
Confidence            699999 8999887765321 12   23445555555 3678888 499999999999999

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.07  E-value=2.6e-06  Score=70.63  Aligned_cols=49  Identities=35%  Similarity=0.451  Sum_probs=36.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCc-----cccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGI-----IHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~gi-----iH~Dlk~~Nil~~   60 (329)
                      +|||++ |.++.+.   .    ..   ...+..+++.+++.||+ .++     +|||++|.||++.
T Consensus        68 lv~e~i~G~~l~~~---~----~~---~~~~~~~l~~~l~~LH~-~~~~~~~~~HgD~~~~Nil~~  122 (170)
T cd05151          68 LITEFIEGSELLTE---D----FS---DPENLEKIAKLLKKLHS-SPLPDLVPCHNDLLPGNFLLD  122 (170)
T ss_pred             EEEEecCCCccccc---c----cc---CHHHHHHHHHHHHHHhC-CCCCCceeecCCCCcCcEEEE
Confidence            578998 6666543   0    11   23456789999999998 475     9999999999993

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.05  E-value=9.6e-06  Score=70.08  Aligned_cols=58  Identities=33%  Similarity=0.492  Sum_probs=49.1

Q ss_pred             Cccccc-c-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~-g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      ||+|++ | .+|.+++.....  ++......++.+++..+.-||. .||+|+|+++.|||+..
T Consensus        94 lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~~lH~-~gi~H~Dl~~~NILv~~  153 (206)
T PF06293_consen   94 LITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIAKLHD-AGIYHGDLNPSNILVDP  153 (206)
T ss_pred             EEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHHHHHH-CcCCCCCCCcccEEEeC
Confidence            578888 5 379998887433  6677788999999999999999 49999999999999954

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.85  E-value=1.3e-05  Score=78.59  Aligned_cols=53  Identities=25%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             Cccccc-chhHHHHHHhhcCC----CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFL-GDSLLRLIKYSRYK----GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~----~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      |||||+ |..+.++-.....+    .+....+..++.|++       . .|++|+|+||+||++..
T Consensus       238 LvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-------~-~GffHaDpHPGNIlv~~  295 (537)
T PRK04750        238 MVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF-------R-DGFFHADMHPGNIFVSY  295 (537)
T ss_pred             EEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-------h-CCeeeCCCChHHeEEec
Confidence            699999 88998753322111    144445555556654       3 49999999999999943

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.66  E-value=0.00016  Score=70.88  Aligned_cols=95  Identities=20%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHH
Q 020248           23 ELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKR  102 (329)
Q Consensus        23 ~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (329)
                      ....+..-++||+.||.|||.+++++|+.|.-..|.+                                           
T Consensus       102 ~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfV-------------------------------------------  138 (690)
T KOG1243|consen  102 GKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFV-------------------------------------------  138 (690)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEE-------------------------------------------
Confidence            3556777899999999999977899999999998888                                           


Q ss_pred             HhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc--cC-CCCCCCcchHHhhcCCCCccchHH
Q 020248          103 RAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA--EE-IQTRQYRAPEVILRAGYSFSVDMW  179 (329)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~--~~-~~~~~y~aPE~~~~~~~s~~~Diw  179 (329)
                                                   .....-+|++|.++........  +. ..--.|..|+.+....  -..|.|
T Consensus       139 -----------------------------n~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~  187 (690)
T KOG1243|consen  139 -----------------------------NESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSW  187 (690)
T ss_pred             -----------------------------cCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhh
Confidence                                         3356789999988755443211  11 1111355555443332  346999


Q ss_pred             HHHHHHHHHHhC
Q 020248          180 SFACTAFELATG  191 (329)
Q Consensus       180 slG~il~~l~~g  191 (329)
                      -|||++|+++.|
T Consensus       188 ~Lg~li~el~ng  199 (690)
T KOG1243|consen  188 GLGCLIEELFNG  199 (690)
T ss_pred             hHHHHHHHHhCc
Confidence            999999999999

>PRK09902 hypothetical protein; Provisional

Probab=97.49  E-value=0.00026  Score=60.93  Aligned_cols=59  Identities=12%  Similarity=0.042  Sum_probs=48.7

Q ss_pred             Ccccccc--hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFLG--DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~g--~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      ||.|-++  .+|.+++....-...+......+..+++..++-||+ .|+.|+|+.+.||++.
T Consensus       102 LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~-~Gv~Hgdly~khIll~  162 (216)
T PRK09902        102 LVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHS-VNRQHGCCYVRHIYVK  162 (216)
T ss_pred             EEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH-CCCcCCCCCHhheeec
Confidence            4677775  689988866433345777788999999999999999 5999999999999993

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.45  E-value=0.00014  Score=62.97  Aligned_cols=49  Identities=24%  Similarity=0.556  Sum_probs=37.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      |||||+ |..|.++..      ++.    .+...+.+++.-+|+ .|+.|||.+|+|+++.
T Consensus       120 ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~-~G~~HGD~hpgNFlv~  169 (229)
T PF06176_consen  120 LLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHK-HGFYHGDPHPGNFLVS  169 (229)
T ss_pred             EEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHH-cCCccCCCCcCcEEEE
Confidence            589999 877776543      222    234567778999999 5999999999999983

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.23  E-value=0.00029  Score=61.79  Aligned_cols=59  Identities=31%  Similarity=0.484  Sum_probs=41.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      |||||+|......-.. ...++....+..+..+++.++.-|-..+|++|+||+.=|||+.
T Consensus       143 LvMEfIg~~g~pAP~L-kDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~  201 (268)
T COG1718         143 LVMEFIGDDGLPAPRL-KDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH  201 (268)
T ss_pred             EEEEeccCCCCCCCCc-ccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE
Confidence            6899997652111111 1112334468888899999998887757999999999999993

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.03  E-value=0.0005  Score=59.27  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=24.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR   43 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~   43 (329)
                      +|||++ |.++.+.+..   ..++.+....++.+++.+|..||+
T Consensus        77 ~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          77 YVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             EEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhC
Confidence            467787 6666554321   125566666667777777777764

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=96.60  E-value=0.0023  Score=56.84  Aligned_cols=52  Identities=38%  Similarity=0.567  Sum_probs=37.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      +|||+. |..|..+.       +....+..++.-|+.-+.-+-. .|++|||+++-||+++
T Consensus       184 VvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~-~GiVHGDlSefNIlV~  236 (304)
T COG0478         184 VVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYR-RGIVHGDLSEFNILVT  236 (304)
T ss_pred             eeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHH-cCccccCCchheEEEe
Confidence            588988 65555433       2344456667777777766665 5999999999999993

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=96.49  E-value=0.0041  Score=60.90  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=35.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      |+|||+ |..+.++..... .+++...+.....++..-.- ++  .|+.|.|.+|.||++
T Consensus       243 LtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f~~q~-~~--dgffHaDpHpGNi~v  298 (517)
T COG0661         243 LTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAFLRQL-LR--DGFFHADPHPGNILV  298 (517)
T ss_pred             EEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHHHHHH-Hh--cCccccCCCccceEE
Confidence            689999 888888865443 34553333332222222111 22  399999999999999

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.44  E-value=0.013  Score=61.54  Aligned_cols=168  Identities=21%  Similarity=0.273  Sum_probs=101.0

Q ss_pred             ccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCC
Q 020248            4 EFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPE   82 (329)
Q Consensus         4 e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~   82 (329)
                      ++| +.++.+.+...  ..++.+..+.++.+++.|+.|+|+.        +..|+.+....+..                
T Consensus       266 ~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL~~~h~~--------~l~~v~L~~s~~~~----------------  319 (1351)
T KOG1035|consen  266 EICSKVELRSLLQSV--GSIPLETLRILHQKLLEGLAYLHSL--------SLEHVVLSASSSKE----------------  319 (1351)
T ss_pred             hhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhHHHHHHh--------ccceeEEecccccc----------------
Confidence            344 45566666655  3488899999999999999999983        45666663321100                


Q ss_pred             CCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEE--eecCcccccccccccC--CCC
Q 020248           83 GSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKV--VDFGNACRANKQFAEE--IQT  158 (329)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~Dfg~a~~~~~~~~~~--~~~  158 (329)
                                                                   .+. .....+..  .||+.+.+........  ..+
T Consensus       320 ---------------------------------------------~~~-~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~  353 (1351)
T KOG1035|consen  320 ---------------------------------------------STV-DGEGVVAISLSDFDSSKPLPDNEKSFSDLLA  353 (1351)
T ss_pred             ---------------------------------------------ccc-CccceeecchhhhcccccCCCcccchhhcCc
Confidence                                                         000 11122232  3666665444322211  223


Q ss_pred             CCCcchHHhhcCCC--CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          159 RQYRAPEVILRAGY--SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~~~--s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ..+.++|......+  +...|+|.+|..+..+..|..+-...            +.+                       
T Consensus       354 ~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~------------~~~-----------------------  398 (1351)
T KOG1035|consen  354 EIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKS------------AVP-----------------------  398 (1351)
T ss_pred             cccccccccccccchhhhhhHHHHHHHHHhhhhhcCcccccc------------cch-----------------------
Confidence            45667776665544  44579999999988887764422111            000                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                      ..+      ++........+++.+|+.-++++|+++.+++.|++....
T Consensus       399 ----------------~~~------l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~  440 (1351)
T KOG1035|consen  399 ----------------VSL------LDVLSTSELLDALPKCLDEDSEERLSALELLTHPFLRFP  440 (1351)
T ss_pred             ----------------hhh------hccccchhhhhhhhhhcchhhhhccchhhhhhchhcccc
Confidence                            001      011112267788999999999999999999999998754

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=96.02  E-value=0.011  Score=57.94  Aligned_cols=57  Identities=19%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      |+|||| |..+.|+-.... .+++...+..-..+...-+-+.   .|++|+|=+|.||++..
T Consensus       279 LtME~~~G~~i~Dl~~i~~-~gi~~~~i~~~l~~~~~~qIf~---~GffHaDPHPGNilv~~  336 (538)
T KOG1235|consen  279 LTMEYVDGIKINDLDAIDK-RGISPHDILNKLVEAYLEQIFK---TGFFHADPHPGNILVRP  336 (538)
T ss_pred             EEEEecCCccCCCHHHHHH-cCCCHHHHHHHHHHHHHHHHHh---cCCccCCCCCCcEEEec
Confidence            689999 776665544332 3466554444444433323322   28999999999999953

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=94.78  E-value=0.026  Score=52.56  Aligned_cols=58  Identities=28%  Similarity=0.375  Sum_probs=46.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      |||+|+|.+-+..-... .-.++...+..+-.|++.-+.-|-+.|++||.||.--|+|+
T Consensus       241 LVM~FlGrdgw~aPkLK-d~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Ly  298 (520)
T KOG2270|consen  241 LVMEFLGRDGWAAPKLK-DASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLY  298 (520)
T ss_pred             EeeeeccCCCCcCcccc-cccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheE
Confidence            79999986544333322 13477888999999999999988888999999999999998

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=94.48  E-value=0.017  Score=62.35  Aligned_cols=123  Identities=14%  Similarity=0.085  Sum_probs=86.3

Q ss_pred             ccccc-chhHHHHHHhhcCCC--cchHHHHHHHHHHHHHHHHHHhhCC----ccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            2 VLEFL-GDSLLRLIKYSRYKG--LELNKVREICKYILTGLDYLHRELG----IIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~--l~~~~~~~i~~qll~al~~lH~~~g----iiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +++++ ++.+++.+..+..+.  +...-+.....+.+.+..-+|+.-+    .+|.++|+-|.++.              
T Consensus      1309 r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIV-------------- 1374 (2724)
T KOG1826|consen 1309 RSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIV-------------- 1374 (2724)
T ss_pred             HHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhcccee--------------
Confidence            46777 889999998875432  4444455445554666666665323    57788888888872              


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---c
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---Q  151 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~  151 (329)
                                                                                ....++++++|+..-.+.   .
T Consensus      1375 ----------------------------------------------------------tny~v~~gk~gLdKIknp~~sf 1396 (2724)
T KOG1826|consen 1375 ----------------------------------------------------------TNYNVKLGKGGLDKIKNPVLSF 1396 (2724)
T ss_pred             ----------------------------------------------------------cCCcccccccccccccCchHhh
Confidence                                                                      244678888888752221   2


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA  196 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~  196 (329)
                      .....+++.|+.|++.-.-.++.++|+|..||-.|.+..|..+|.
T Consensus      1397 ~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1397 FGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            223456778999999888889989999999999999888877663

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=94.47  E-value=0.37  Score=46.86  Aligned_cols=58  Identities=16%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             Cccccc--chhHHHHHHhh-------------cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q 020248            1 MVLEFL--GDSLLRLIKYS-------------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~--g~sL~~~~~~~-------------~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~   59 (329)
                      |||+|.  -++|.++.-..             .....+++.+..+..||..||.++|+. |+.-+-|.+.+|++
T Consensus       354 lvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss-GLAck~L~~~kIlv  426 (655)
T KOG3741|consen  354 LVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS-GLACKTLDLKKILV  426 (655)
T ss_pred             EEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc-CceeecccHhHeEe
Confidence            467776  35676654321             123477889999999999999999995 99889999999999

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=94.42  E-value=0.04  Score=53.41  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=61.1

Q ss_pred             ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchh
Q 020248          174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD  253 (329)
Q Consensus       174 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (329)
                      +++||||+|.++.++..|..++...      ....++.-+ ..++..+...                 ....      .+
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~------~~s~~l~~i-~k~~~~d~~~-----------------~~~a------~e  159 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAEL------TESEYLEIL-LKYYTDDQEL-----------------LSTA------ME  159 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHH------HHHHHHHHH-HHhccCchhH-----------------HHHH------HH
Confidence            5999999999999999998887654      122222222 2222222111                 1110      01


Q ss_pred             HHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          254 RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ++      ....++..+.+++.+|+...|..||...+++.|+-|++.
T Consensus       160 ~~------~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  160 HL------IQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HH------HHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHH
Confidence            11      123456788999999999999999999999999999877

>PRK05231 homoserine kinase; Provisional

Probab=91.92  E-value=0.12  Score=47.47  Aligned_cols=15  Identities=47%  Similarity=0.855  Sum_probs=14.1

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      |+||+|+++.||++.
T Consensus       188 ~liHgD~~~~Nil~~  202 (319)
T PRK05231        188 GVIHADLFRDNVLFE  202 (319)
T ss_pred             ccCCCCCCCCcEEEE
Confidence            899999999999993

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=91.91  E-value=0.18  Score=43.94  Aligned_cols=15  Identities=33%  Similarity=0.395  Sum_probs=13.9

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      ++||+|+++.||++.
T Consensus       171 ~l~H~Dl~~~Nil~~  185 (235)
T cd05157         171 VFCHNDLLSGNIIYN  185 (235)
T ss_pred             EEEcCCCCcCcEEEe
Confidence            699999999999993

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=91.69  E-value=0.31  Score=44.34  Aligned_cols=16  Identities=44%  Similarity=0.654  Sum_probs=14.2

Q ss_pred             CCccccCCCCCceeee
Q 020248           45 LGIIHTDLKPENILLV   60 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~~   60 (329)
                      .++||+|+++.||++.
T Consensus       179 ~~lcH~Dl~~~Nil~~  194 (302)
T cd05156         179 VVFCHNDLQEGNILLL  194 (302)
T ss_pred             ceEEecCCCcCeEEec
Confidence            3689999999999993

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=91.05  E-value=0.37  Score=44.04  Aligned_cols=16  Identities=50%  Similarity=0.912  Sum_probs=14.5

Q ss_pred             CCccccCCCCCceeee
Q 020248           45 LGIIHTDLKPENILLV   60 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~~   60 (329)
                      .++||+|+++.|+++.
T Consensus       187 ~~l~HgD~~~~Nvl~~  202 (307)
T TIGR00938       187 RGVIHADLFPDNVLFD  202 (307)
T ss_pred             CccCCCCCCcCcEEEE
Confidence            3899999999999993

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=91.04  E-value=0.42  Score=43.02  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhh-CCccccCCCCCceee
Q 020248           24 LNKVREICKYILTGLDYLHRE-LGIIHTDLKPENILL   59 (329)
Q Consensus        24 ~~~~~~i~~qll~al~~lH~~-~giiH~Dlk~~Nil~   59 (329)
                      .......+..+-.++.-++.. +-+||+|+.|+|+++
T Consensus       131 ~~~~~~~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~  167 (269)
T COG0510         131 NHLLRKKLKELRRALEEVPKDDLVPCHNDLNPGNLLL  167 (269)
T ss_pred             hHHHHHHHHHHHHHhhhcCCCceeeecCCCCccceEE
Confidence            334555666667777777753 359999999999999

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=90.48  E-value=0.52  Score=42.94  Aligned_cols=15  Identities=47%  Similarity=0.616  Sum_probs=14.0

Q ss_pred             CCccccCCCCCceee
Q 020248           45 LGIIHTDLKPENILL   59 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~   59 (329)
                      .++||||+++.||++
T Consensus       187 ~~liHgD~~~~Nil~  201 (313)
T TIGR02906       187 RGFCHQDYAYHNILL  201 (313)
T ss_pred             CceEcCCCCcccEEE
Confidence            379999999999999

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=89.74  E-value=0.24  Score=43.40  Aligned_cols=14  Identities=43%  Similarity=0.674  Sum_probs=13.4

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      ++||||+++.||++
T Consensus       165 ~l~HGD~~~~Nvlv  178 (235)
T cd05155         165 VWFHGDLAPGNLLV  178 (235)
T ss_pred             eEEeCCCCCCcEEE
Confidence            58999999999999

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=89.12  E-value=0.27  Score=44.52  Aligned_cols=15  Identities=47%  Similarity=0.833  Sum_probs=14.0

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      ++||+|++|.|+++.
T Consensus       176 ~l~HgD~~~~Nil~~  190 (296)
T cd05153         176 GVIHADLFRDNVLFD  190 (296)
T ss_pred             cCCccCcCcccEEEe
Confidence            799999999999993

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=88.97  E-value=0.2  Score=49.83  Aligned_cols=61  Identities=26%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             ceEEeecCcccccccc--cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCC
Q 020248          136 RCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFA  196 (329)
Q Consensus       136 ~~~l~Dfg~a~~~~~~--~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~  196 (329)
                      ..++.+|+..-..+..  .....+++.++|||+..+..+....|.|++|.-..++.-|-+|-.
T Consensus       369 ~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  369 EVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence            4677788877555543  456678999999999999999999999999976666666666554

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=88.00  E-value=0.42  Score=44.09  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248           27 VREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus        27 ~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      +..++..+..=+--|.. .|+||||.+--||++.
T Consensus       204 ~~~ly~~lm~~Iv~la~-~GlIHgDFNEFNimv~  236 (465)
T KOG2268|consen  204 PPTLYDDLMGLIVRLAN-HGLIHGDFNEFNIMVK  236 (465)
T ss_pred             hHHHHHHHHHHHHHHHH-cCceecccchheeEEe
Confidence            33444444444555666 4999999999999993

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=87.42  E-value=0.26  Score=42.31  Aligned_cols=15  Identities=53%  Similarity=0.782  Sum_probs=12.0

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      ++||+|+++.||++.
T Consensus       167 ~~~HgD~~~~Nil~~  181 (239)
T PF01636_consen  167 VLIHGDLHPGNILVD  181 (239)
T ss_dssp             EEE-SS-SGGGEEEE
T ss_pred             EEEEeccccccceee
Confidence            699999999999994

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=86.99  E-value=0.43  Score=41.70  Aligned_cols=14  Identities=21%  Similarity=0.439  Sum_probs=13.0

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      .+||||++|.||++
T Consensus       154 ~~~HgD~~~~Nii~  167 (226)
T TIGR02172       154 TCLHGDFQIGNLIT  167 (226)
T ss_pred             ceEecCCCCCcEEE
Confidence            47999999999999

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PRK10271 thiK thiamine kinase; Provisional

Probab=86.70  E-value=0.53  Score=39.88  Aligned_cols=14  Identities=21%  Similarity=0.423  Sum_probs=12.6

Q ss_pred             ccccCCCCCceeee
Q 020248           47 IIHTDLKPENILLV   60 (329)
Q Consensus        47 iiH~Dlk~~Nil~~   60 (329)
                      .||+|+.|.|++++
T Consensus        79 p~H~D~~~~N~~~~   92 (188)
T PRK10271         79 PLHMDVHAGNLVHS   92 (188)
T ss_pred             eecCCCCCccEEEE
Confidence            69999999999983

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=86.67  E-value=0.52  Score=41.34  Aligned_cols=15  Identities=27%  Similarity=0.257  Sum_probs=13.6

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||+|+.+.||++.
T Consensus       164 ~l~HgD~~~~Nil~~  178 (244)
T cd05150         164 VVTHGDACLPNIIVD  178 (244)
T ss_pred             EEECCCCCCccEEEe
Confidence            589999999999993

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR02721 ycfN_thiK thiamine kinase

Probab=86.33  E-value=0.5  Score=41.88  Aligned_cols=15  Identities=20%  Similarity=0.468  Sum_probs=13.7

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||+|+.+.||+++
T Consensus       147 ~l~H~Dl~~~Nil~~  161 (256)
T TIGR02721       147 APLHMDVHAYNLVVT  161 (256)
T ss_pred             eeecCCCCcCcEEEe
Confidence            589999999999993

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=86.32  E-value=0.6  Score=40.06  Aligned_cols=14  Identities=50%  Similarity=0.809  Sum_probs=10.3

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      .+||+|+.+.||++
T Consensus       144 v~cHnDl~~~Nil~  157 (211)
T PF01633_consen  144 VFCHNDLNPGNILI  157 (211)
T ss_dssp             EEE-S--SGGGEEE
T ss_pred             eEeeccCccccEEe
Confidence            58999999999999

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=85.59  E-value=0.76  Score=39.11  Aligned_cols=16  Identities=31%  Similarity=0.356  Sum_probs=14.2

Q ss_pred             CccccCCCCCceeeec
Q 020248           46 GIIHTDLKPENILLVS   61 (329)
Q Consensus        46 giiH~Dlk~~Nil~~~   61 (329)
                      .+||||+.+.|+++..
T Consensus       121 vl~HgD~~~~N~~~~~  136 (196)
T smart00587      121 VLNHGDLWANNIMFKY  136 (196)
T ss_pred             EEeeCCCCccceeecc
Confidence            6899999999999943

subfamily of choline kinases

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=85.37  E-value=1.3  Score=40.50  Aligned_cols=15  Identities=20%  Similarity=0.333  Sum_probs=14.0

Q ss_pred             CCccccCCCCCceee
Q 020248           45 LGIIHTDLKPENILL   59 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~   59 (329)
                      .++||+|+.++|+++
T Consensus       196 ~~lcHgD~~~~Nvl~  210 (309)
T TIGR02904       196 TVLVHGKLSLSHFLY  210 (309)
T ss_pred             eeeeCCCCcHHhEEE
Confidence            379999999999999

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=84.61  E-value=1.3  Score=41.00  Aligned_cols=15  Identities=53%  Similarity=0.955  Sum_probs=13.6

Q ss_pred             ccccCCCCCceeeec
Q 020248           47 IIHTDLKPENILLVS   61 (329)
Q Consensus        47 iiH~Dlk~~Nil~~~   61 (329)
                      +||+|+.+.||++..
T Consensus       199 iIH~D~~~~NVl~d~  213 (331)
T COG2334         199 IIHGDLHPDNVLFDD  213 (331)
T ss_pred             eeecCCCccceeEcC
Confidence            999999999999943

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=84.04  E-value=1.5  Score=37.07  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=32.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHh---hCCccccCCCCCceeee
Q 020248           22 LELNKVREICKYILTGLDYLHR---ELGIIHTDLKPENILLV   60 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~---~~giiH~Dlk~~Nil~~   60 (329)
                      .+...+..|+.+++..+.+|++   . .+.-.|++++|+.+.
T Consensus        56 ~~w~~R~~iA~~lL~~l~~l~~~~~~-~~~lcDv~~~nfgv~   96 (188)
T PF12260_consen   56 SPWEQRAKIALQLLELLEELDHGPLG-FFYLCDVSPDNFGVN   96 (188)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCCCC-cEEEeecchHHeEEe
Confidence            5788999999999999999996   2 366679999999993

Proteins in this uncharacterised family are described as transmembrane proteins.

>PLN02236 choline kinase

Probab=83.49  E-value=1.4  Score=41.04  Aligned_cols=15  Identities=40%  Similarity=0.662  Sum_probs=13.7

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||+|+++.||++.
T Consensus       201 ~~cH~Dl~~~Nil~~  215 (344)
T PLN02236        201 GFCHNDLQYGNIMID  215 (344)
T ss_pred             eEEeCCCCcCcEEEe
Confidence            689999999999993

>PRK11768 serine/threonine protein kinase; Provisional

Probab=81.95  E-value=0.84  Score=42.23  Aligned_cols=14  Identities=43%  Similarity=0.539  Sum_probs=13.5

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      ++||+|+.+.||++
T Consensus       197 ~liHgD~h~~NvL~  210 (325)
T PRK11768        197 LRLHGDCHPGNILW  210 (325)
T ss_pred             cceecCCCchhccc
Confidence            79999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		1e-66
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		1e-66
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		6e-64
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		8e-51
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		8e-51
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		3e-23
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		5e-20
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-19
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		3e-18
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		3e-17
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		4e-17
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		8e-17
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		5e-15
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		5e-15
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		5e-15
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		4e-14
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		2e-13
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		2e-13
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		3e-11
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-10
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		2e-10
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		3e-10
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-10
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		4e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		4e-10
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-10
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		4e-10
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		4e-10
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		5e-10
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		5e-10
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		5e-10
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		5e-10
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		6e-10
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		6e-10
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		6e-10
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		6e-10
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		7e-10
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		7e-10
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		7e-10
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		8e-10
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		8e-10
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		8e-10
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		9e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		9e-10
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		9e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		9e-10
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		9e-10
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		1e-09
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		1e-09
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-09
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		1e-09
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		1e-09
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		1e-09
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		1e-09
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		1e-09
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		1e-09
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-09
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		1e-09
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		1e-09
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-09
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		1e-09
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		1e-09
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		1e-09
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-09
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-09
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		1e-09
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		1e-09
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-09
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		1e-09
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		1e-09
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-09
2oza_B	366	Structure Of P38alpha Complex Length = 366		1e-09
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		1e-09
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		1e-09
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		1e-09
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		1e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		1e-09
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		1e-09
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		1e-09
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		1e-09
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		1e-09
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		1e-09
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		1e-09
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-09
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-09
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		2e-09
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		2e-09
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		2e-09
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		2e-09
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		2e-09
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		2e-09
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-09
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		2e-09
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-09
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-09
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-09
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-09
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		2e-09
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-09
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-09
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-09
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		2e-09
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-09
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-09
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		2e-09
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-09
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-09
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-09
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-09
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-09
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-09
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-09
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-09
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		2e-09
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-09
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-09
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-09
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-09
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		3e-09
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-09
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		3e-09
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		3e-09
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		3e-09
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		3e-09
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-09
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		4e-09
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		4e-09
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		4e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-09
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		5e-09
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		6e-09
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		7e-09
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		8e-09
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		1e-08
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		1e-08
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		1e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		1e-08
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-08
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		2e-08
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		2e-08
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		2e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-08
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		3e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-08
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		4e-08
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		5e-08
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		6e-08
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		7e-08
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		7e-08
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		8e-08
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		9e-08
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-07
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		4e-07
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-07
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-07
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		6e-07
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		6e-07
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		6e-07
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		6e-07
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		8e-07
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		9e-07
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		1e-06
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		1e-06
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-06
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		1e-06
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-06
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-06
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		1e-06
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-06
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		1e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-06
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-06
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-06
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		1e-06
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		1e-06
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		1e-06
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-06
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-06
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-06
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		1e-06
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		1e-06
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		1e-06
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		1e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-06
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-06
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-06
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		1e-06
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		1e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		1e-06
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-06
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		2e-06
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		3e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		3e-06
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-06
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		3e-06
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-06
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		3e-06
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-06
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		3e-06
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		4e-06
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		4e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		4e-06
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		5e-06
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		5e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		5e-06
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		5e-06
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		5e-06
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		5e-06
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		5e-06
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		5e-06
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		5e-06
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		5e-06
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		5e-06
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		6e-06
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		6e-06
4ae9_A	343	Structure And Function Of The Human Sperm-specific		6e-06
3g51_A	325	Structural Diversity Of The Active Conformation Of		6e-06
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		6e-06
4ae6_A	343	Structure And Function Of The Human Sperm-specific		6e-06
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		6e-06
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		6e-06
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		6e-06
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		6e-06
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		6e-06
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		6e-06
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		6e-06
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		6e-06
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		6e-06
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		6e-06
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		7e-06
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		7e-06
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		7e-06
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		7e-06
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		7e-06
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		7e-06
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		7e-06
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		7e-06
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		7e-06
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		7e-06
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		7e-06
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		7e-06
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		7e-06
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		7e-06
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		7e-06
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		7e-06
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		7e-06
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		7e-06
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		8e-06
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		9e-06
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-05
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		1e-05
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-05
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-05
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		1e-05
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		2e-05
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-05
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		2e-05
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		2e-05
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		2e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		2e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		2e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-05
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		2e-05
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-05
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-05
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		3e-05
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		3e-05
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		3e-05
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		3e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		4e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		4e-05
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-05
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		4e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		4e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		4e-05
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-05
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		5e-05
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		5e-05
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		6e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		6e-05
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		6e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-05
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-05
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		6e-05
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		6e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		6e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		7e-05
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-05
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		7e-05
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		7e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		8e-05
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		8e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		8e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		8e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		8e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		8e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		8e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		8e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		8e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		8e-05
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		8e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		8e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		9e-05
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		9e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		9e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		9e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		9e-05
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		9e-05
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		1e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-04
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-04
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-04
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-04
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-04
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-04
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		1e-04
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		1e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		1e-04
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		1e-04
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		1e-04
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		1e-04
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		1e-04
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		1e-04
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		1e-04
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		1e-04
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		1e-04
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		1e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		2e-04
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		2e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-04
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		2e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		2e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		2e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		2e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		2e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		3e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-04
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		3e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		3e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		3e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-04
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		3e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-04
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		4e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		4e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		4e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		4e-04
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		4e-04
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		4e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		4e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		4e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		7e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		7e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		7e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		7e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		9e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		9e-04

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/305 (43%), Positives = 182/305 (59%), Gaps = 37/305 (12%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG  LL+ I  S Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL 
Sbjct: 122 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 181
Query: 61  ST-------IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISI 113
                       + +  RSG  P    P GS                          +S 
Sbjct: 182 VNEQYIRRLAAEATEWQRSGAPP----PSGSA-------------------------VST 212
Query: 114 RRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYS 173
             A+ G   L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+
Sbjct: 213 APATAGNF-LVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYN 271
Query: 174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 233
              D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK+
Sbjct: 272 TPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKE 331
Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
           +F + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+
Sbjct: 332 FFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391
Query: 294 HPWLS 298
           HPWL+
Sbjct: 392 HPWLN 396

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/305 (43%), Positives = 182/305 (59%), Gaps = 37/305 (12%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG  LL+ I  S Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL 
Sbjct: 106 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 165
Query: 61  ST-------IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISI 113
                       + +  RSG  P    P GS                          +S 
Sbjct: 166 VNEQYIRRLAAEATEWQRSGAPP----PSGSA-------------------------VST 196
Query: 114 RRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYS 173
             A+ G   L  P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+
Sbjct: 197 APATAGNF-LVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYN 255
Query: 174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 233
              D+WS AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK+
Sbjct: 256 TPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKE 315
Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
           +F + GDLK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+
Sbjct: 316 FFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 375
Query: 294 HPWLS 298
           HPWL+
Sbjct: 376 HPWLN 380

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score =  240 bits (613), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 178/305 (58%), Gaps = 39/305 (12%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG  LL+ I  S Y+GL +  V+ I + +L GLDYLH +  IIHTD+KPENIL+ 
Sbjct: 116 MVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMC 175
Query: 61  -------STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISI 113
                       + +  ++G  P    P GS    + +   +V                 
Sbjct: 176 VDDAYVRRMAAEATEWQKAGAPP----PSGSAVSTAPAADLLVN---------------- 215
Query: 114 RRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYS 173
                     P   R  D I  R K+ D GNAC  +K F E+IQTRQYR+ EV++ AGYS
Sbjct: 216 ----------PLDPRNADKI--RVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYS 263
Query: 174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 233
              D+WS AC AFELATGD LF P SG+ +  DEDH+A ++EL+G +PR  A+ G  S++
Sbjct: 264 TPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSRE 323
Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
           +F+R G+L+ I +LK WSL  +LV+KY +   DA +F +FL+P+L+  PEKR +A +CL+
Sbjct: 324 FFNRRGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLR 383
Query: 294 HPWLS 298
           HPWL+
Sbjct: 384 HPWLN 388

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score =  197 bits (500), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 157/297 (52%), Gaps = 66/297 (22%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG++LL LIK   ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+ 
Sbjct: 107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM- 165
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
                           I++ PE                            I I+ A +G 
Sbjct: 166 ---------------EIVDSPENL--------------------------IQIKIADLG- 183
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                                  NAC  ++ +   IQTR+YR+PEV+L A +    D+WS
Sbjct: 184 -----------------------NACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWS 220
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
            AC  FEL TGD LF P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  G 
Sbjct: 221 TACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGL 280
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           L+ I +LKFW L+ +L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 281 LRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score =  197 bits (500), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 106/297 (35%), Positives = 157/297 (52%), Gaps = 66/297 (22%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG++LL LIK   ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+ 
Sbjct: 107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM- 165
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
                           I++ PE                            I I+ A +G 
Sbjct: 166 ---------------EIVDSPENL--------------------------IQIKIADLG- 183
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                                  NAC  ++ +   IQTR+YR+PEV+L A +    D+WS
Sbjct: 184 -----------------------NACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWS 220
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
            AC  FEL TGD LF P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  G 
Sbjct: 221 TACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGL 280
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           L+ I +LKFW L+ +L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 281 LRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 130/305 (42%), Gaps = 66/305 (21%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           ++ E LG SL  +I  + Y G  +  ++  C  IL  L+YL R++ + HTDLKPENILL 
Sbjct: 113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYL-RKMSLTHTDLKPENILL- 170
Query: 61  STIDPSKDP-IRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMG 119
                  DP     L  +    +G                           I I R    
Sbjct: 171 ------DDPYFEKSLITVRRVTDGK-------------------------KIQIYRTKST 199
Query: 120 GIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           GI                K++DFG A   +      I TRQYRAPEVIL  G+  S DMW
Sbjct: 200 GI----------------KLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMW 243
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR 237
           SF C   EL TG +LF         E  +HLA+M  +I  +P+ +     ++    Y ++
Sbjct: 244 SFGCVLAELYTGSLLFRTH------EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNK 297
Query: 238 HGDLKRIRRLKFWSLDRLLVDK-----YRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL 292
             +LK        S++ +   K     Y+  + +   F +FL  +L   P  RP+  + L
Sbjct: 298 -DELKLAWPENASSINSIKHVKKCLPLYKIIKHEL--FCDFLYSILQIDPTLRPSPAELL 354
Query: 293 QHPWL 297
           +H +L
Sbjct: 355 KHKFL 359

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 130/317 (41%), Gaps = 94/317 (29%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E LG S    IK + +    L+ +R++   I   +++LH    + HTDLKPENIL V
Sbjct: 94  IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN-KLTHTDLKPENILFV 152
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
            +             P ++R E ++                                   
Sbjct: 153 QS------DYTEAYNPKIKRDERTL----------------------------------- 171
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                       I+   KVVDFG+A   ++  +  + TR YRAPEVIL  G+S   D+WS
Sbjct: 172 ------------INPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWS 219
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   E   G  +F         + ++HLA+M  ++G +P+ +                
Sbjct: 220 IGCILIEYYLGFTVFPTH------DSKEHLAMMERILGPLPKHM---------------- 257
Query: 241 LKRIRRLKFWSLDRLLVDKY----RFSETDAREFAEFLVP--------------LLDFTP 282
           +++ R+ K++  DRL  D++    R+     +   EF++               +L++ P
Sbjct: 258 IQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDP 317
Query: 283 EKRPTAQQCLQHPWLSL 299
            KR T ++ L+HP+  L
Sbjct: 318 AKRITLREALKHPFFDL 334

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 128/317 (40%), Gaps = 94/317 (29%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E LG S    IK + +    L+ +R++   I   +++LH    + HTDLKPENIL V
Sbjct: 94  IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN-KLTHTDLKPENILFV 152
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
            +             P ++R E ++                                   
Sbjct: 153 QS------DYTEAYNPKIKRDERTL----------------------------------- 171
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                       I+   KVVDFG+A   ++  +  +  R YRAPEVIL  G+S   D+WS
Sbjct: 172 ------------INPDIKVVDFGSATYDDEHHSTLVXXRHYRAPEVILALGWSQPCDVWS 219
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   E   G  +F     +      +HLA+M  ++G +P+ +                
Sbjct: 220 IGCILIEYYLGFTVFPTHDSK------EHLAMMERILGPLPKHM---------------- 257
Query: 241 LKRIRRLKFWSLDRLLVDKY----RFSETDAREFAEFLVP--------------LLDFTP 282
           +++ R+ K++  DRL  D++    R+     +   EF++               +L++ P
Sbjct: 258 IQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDP 317
Query: 283 EKRPTAQQCLQHPWLSL 299
            KR T ++ L+HP+  L
Sbjct: 318 AKRITLREALKHPFFDL 334

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 123/303 (40%), Gaps = 72/303 (23%)
Query: 3   LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVST 62
            E LG S    +K + Y    +++VR +   +   + +LH +  + HTDLKPENIL    
Sbjct: 115 FELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLH-DNKLTHTDLKPENILF--- 170
Query: 63  IDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGGIE 122
                                 +N     T                            +E
Sbjct: 171 ----------------------VNSDYELTY--------------------------NLE 182
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
             + ER +    +R  VVDFG+A   ++  +  + TR YRAPEVIL  G+S   D+WS  
Sbjct: 183 KKRDERSVKSTAVR--VVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIG 240
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF------- 235
           C  FE   G  LF         ++ +HLA+M  ++G +P ++ I   + + YF       
Sbjct: 241 CIIFEYYVGFTLFQTH------DNREHLAMMERILGPIPSRM-IRKTRKQKYFYRGRLDW 293
Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           D +    R  R     L R L  +      +  +  + +  +L++ P KR T  + LQHP
Sbjct: 294 DENTSAGRYVRENCKPLRRYLTSE----AEEHHQLFDLIESMLEYEPAKRLTLGEALQHP 349
Query: 296 WLS 298
           + +
Sbjct: 350 FFA 352

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Query: 125 KPERCLDGIDMRC--KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L     R   KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLG 286
Query: 183 CTAFELATGDMLFAPKSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG-- 239
           C   EL TG  L          EDE D LA M+EL+G   +K+     ++K++    G  
Sbjct: 287 CILAELLTGYPLLP-------GEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYP 339
Query: 240 ---------------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK 284
                          +  R RR K                 D   F +FL   L++ P  
Sbjct: 340 RYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAV 399
Query: 285 RPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           R T  Q L+HPWL  R   +  T  K++V++
Sbjct: 400 RMTPGQALRHPWLR-RRLPKPPTGEKTSVKR 429

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 90/196 (45%), Gaps = 26/196 (13%)
Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
           KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  C   EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLP- 300
Query: 198 KSGQGFCEDE-DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG----------------- 239
                  EDE D LA M+EL+G   +K+     ++K++    G                 
Sbjct: 301 ------GEDEGDQLACMIELLGMPXQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVL 354
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
           +  R RR K                 D   F +FL   L++ P  R T  Q L+HPWL  
Sbjct: 355 NGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLR- 413
Query: 300 RNSTRDETKNKSNVEK 315
           R   +  T  K++V++
Sbjct: 414 RRLPKPPTGEKTSVKR 429

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 84.3 bits (207), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 82/180 (45%), Gaps = 23/180 (12%)
Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
           KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  C   EL TG  L  P
Sbjct: 242 KVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-P 300
Query: 198 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG-----------------D 240
              +G     D LA M+EL+G   +K+     ++K++    G                 +
Sbjct: 301 GEDEG-----DQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
             R RR K                 D   F +FL   L++ P  R T  Q L+HPWL  R
Sbjct: 356 GGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRR 415

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 115/319 (36%), Gaps = 100/319 (31%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +  E LG +    +K + ++   L  VR +   +   L +LH E  + HTDLKPENIL V
Sbjct: 108 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFV 166
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
           +                             S    +             N SIR A    
Sbjct: 167 N-----------------------------SEFETLYNEHKSCEEKSVKNTSIRVA---- 193
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                               DFG+A   ++     + TR YR PEVIL  G++   D+WS
Sbjct: 194 --------------------DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWS 233
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  FE   G  LF         E+ +HL +M +++G +P  +                
Sbjct: 234 IGCILFEYYRGFTLFQTH------ENREHLVMMEKILGPIPSHM---------------- 271
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL---------------------LD 279
           + R R+ K++    L+ D+   + +D R   E   PL                     L+
Sbjct: 272 IHRTRKQKYFYKGGLVWDE---NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLE 328
Query: 280 FTPEKRPTAQQCLQHPWLS 298
           F P +R T  + L HP+ +
Sbjct: 329 FDPAQRITLAEALLHPFFA 347

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 115/319 (36%), Gaps = 100/319 (31%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +  E LG +    +K + ++   L  VR +   +   L +LH E  + HTDLKPENIL V
Sbjct: 131 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFV 189
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
           +                             S    +             N SIR A    
Sbjct: 190 N-----------------------------SEFETLYNEHKSCEEKSVKNTSIRVA---- 216
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                               DFG+A   ++     + TR YR PEVIL  G++   D+WS
Sbjct: 217 --------------------DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWS 256
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  FE   G  LF         E+ +HL +M +++G +P  +                
Sbjct: 257 IGCILFEYYRGFTLFQTH------ENREHLVMMEKILGPIPSHM---------------- 294
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL---------------------LD 279
           + R R+ K++    L+ D+   + +D R   E   PL                     L+
Sbjct: 295 IHRTRKQKYFYKGGLVWDE---NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLE 351
Query: 280 FTPEKRPTAQQCLQHPWLS 298
           F P +R T  + L HP+ +
Sbjct: 352 FDPAQRITLAEALLHPFFA 370

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 115/319 (36%), Gaps = 100/319 (31%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +  E LG +    +K + ++   L  VR +   +   L +LH E  + HTDLKPENIL V
Sbjct: 99  IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFV 157
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
           +                             S    +             N SIR A    
Sbjct: 158 N-----------------------------SEFETLYNEHKSCEEKSVKNTSIRVA---- 184
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                               DFG+A   ++     + TR YR PEVIL  G++   D+WS
Sbjct: 185 --------------------DFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWS 224
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  FE   G  LF         E+ +HL +M +++G +P  +                
Sbjct: 225 IGCILFEYYRGFTLFQTH------ENREHLVMMEKILGPIPSHM---------------- 262
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL---------------------LD 279
           + R R+ K++    L+ D+   + +D R   E   PL                     L+
Sbjct: 263 IHRTRKQKYFYKGGLVWDE---NSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLE 319
Query: 280 FTPEKRPTAQQCLQHPWLS 298
           F P +R T  + L HP+ +
Sbjct: 320 FDPAQRITLAEALLHPFFA 338

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
           K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  C   E+ TG+ LF  
Sbjct: 182 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 239
Query: 198 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD----LKRIRRLK----- 248
            SG     + D +  ++E++G  P  I     +++ +F++  D    LK+ +  K     
Sbjct: 240 -SG---ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKP 295
Query: 249 --FWSLDRLL-----------VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                L  +L             +   +  D  +F + ++ +LD+ P+ R      LQH 
Sbjct: 296 PGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQH- 354
Query: 296 WLSLRNSTRDETKNKS 311
             S    T DE  N S
Sbjct: 355 --SFFKKTADEGTNTS 368

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 45/198 (22%)
Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
           K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  C   E+ TG+ LF+ 
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260
Query: 198 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 257
                   + D +  ++E++G  P  I     +++ +F++  D         W+L +   
Sbjct: 261 ------ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD-------GTWNLKKTKD 307
Query: 258 DKYRF-----------------------------SETDAREFAEFLVPLLDFTPEKRPTA 288
            K  +                             +  D  +F + ++ +LD+ P+ R   
Sbjct: 308 GKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQP 367
Query: 289 QQCLQHPWLSLRNSTRDE 306
              LQH   S    T DE
Sbjct: 368 YYALQH---SFFKKTADE 382

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 45/198 (22%)
Query: 138 KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAP 197
           K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  C   E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 258
Query: 198 KSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLV 257
            SG     + D +  ++E++G  P  I     +++ +F++  D         W+L +   
Sbjct: 259 -SG---ANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD-------GTWNLKKTKD 307
Query: 258 DKYRF-----------------------------SETDAREFAEFLVPLLDFTPEKRPTA 288
            K  +                             +  D  +F + ++ +LD+ P+ R   
Sbjct: 308 GKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQP 367
Query: 289 QQCLQHPWLSLRNSTRDE 306
              LQH   S    T DE
Sbjct: 368 YYALQH---SFFKKTADE 382

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 155 KPGNLAVNEDCELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGC 214
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
              E+ TG  LF         +  D L  +M++ G  P +  +   QS +  +    L  
Sbjct: 215 IMAEMITGKTLFKG------SDHLDQLKEIMKVTGTPPAEF-VQRLQSDEAKNYMKGLPE 267
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           + +  F S+            T+A   A   L  +L    E+R TA + L HP+    + 
Sbjct: 268 LEKKDFASI-----------LTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD 316
Query: 303 TRDETKNKSNVEKVD 317
           T DE +    V+K D
Sbjct: 317 TEDEPQ----VQKYD 327

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 24/190 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 181 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGC 240
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA--IGGAQSKDYFDRHGDL 241
              EL TG  LF         +  + L  +M L G  P  +   +   ++++Y +    +
Sbjct: 241 IMAELLTGRTLFPG------TDHINQLQQIMRLTGTPPASVISRMPSHEARNYINSLPQM 294
Query: 242 -KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            KR     F   + L VD               L  +L    +KR TA + L HP+ S  
Sbjct: 295 PKRNFADVFIGANPLAVD--------------LLEKMLVLDTDKRITASEALAHPYFSQY 340
Query: 301 NSTRDETKNK 310
           +   DE +++
Sbjct: 341 HDPDDEPESE 350

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+ +        E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSID 230
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  +K  +  + L  K +      F ++D++   + L  +L F P KR T ++ 
Sbjct: 271 --DLNCIINMKARNYLQSLPSKTKVAWAKLFPKSDSKAL-DLLDRMLTFNPNKRITVEEA 327
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPTDE 342

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L     + K+ DFG A RA       F+ E+ T  YRAP+V++ +  YS S+D+W
Sbjct: 135 KPQNLLINKRGQLKLGDFGLA-RAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIW 193
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ TG  LF          DE+ L L+ +++G  P +           ++ + 
Sbjct: 194 SCGCILAEMITGKPLFPG------TNDEEQLKLIFDIMGT-PNESLWPSVTKLPKYNPNI 246
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             +  R L      R ++  +     D     +FL  LL   P+ R +A+Q L HPW +
Sbjct: 247 QQRPPRDL------RQVLQPHTKEPLDG-NLMDFLHGLLQLNPDMRLSAKQALHHPWFA 298

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L A  Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNXIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNALKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 301 NSTRDE 306
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A+  F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 151 KPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 210
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PRKIAIGGAQS--KDYFDRH 238
           C   EL  G ++F     QG     DH+    ++I ++  P    +   Q   ++Y +  
Sbjct: 211 CIMGELVKGSVIF-----QG----TDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENR 261
Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCLQ 293
                I      + + L  D    SE++       +  + L  +L   P+KR +  + L+
Sbjct: 262 PAYPGI------AFEELFPDWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALR 315
Query: 294 HPWLSL 299
           HP++++
Sbjct: 316 HPYITV 321

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 230
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 271 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 327
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPSDE 342

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 285
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 301 NSTRDE 306
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 252
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 253 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 309
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L+      DE
Sbjct: 310 LAHPYLAQYYDPSDE 324

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY+ +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYAANVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM--PRKIAIGGAQS--KDYFDRH 238
           C   EL  G ++F     QG     DH+    ++I ++  P    +   Q   ++Y +  
Sbjct: 213 CIMGELVKGCVIF-----QG----TDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENR 263
Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                I+  + +  D +   +    +    +  + L  +L   P+KR +  + L+HP+++
Sbjct: 264 PKYPGIKFEELFP-DWIFPSESERDKIKTSQARDLLSKMLVIDPDKRISVDEALRHPYIT 322
Query: 299 L 299
           +
Sbjct: 323 V 323

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 285
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 301 NSTRDE 306
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 171 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 230
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 231 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 284
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 285 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 330
Query: 301 NSTRDE 306
           +   DE
Sbjct: 331 HDPDDE 336

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + + A  + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 214 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 267
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 268 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 237
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 218 IMAELLQGKALFP---GSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 271
Query: 238 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 272 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 313
Query: 297 LSLRNSTRDETKNKSNVEKVDVGMSKLE 324
            S  +   DE + +   E V+     LE
Sbjct: 314 FSQYHDPEDEPEAEPYDESVEAKERTLE 341

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 152 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 211
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 212 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 265
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 266 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 322

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 251 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 304
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 305 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 171 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 230
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 231 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 270
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 271 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 327
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 328 LAHPYLEQYYDPSDE 342

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 214 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 267
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 268 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 163 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 222
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 223 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 276
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 277 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 322
Query: 301 NSTRDE 306
           +   DE
Sbjct: 323 HDPDDE 328

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 267 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 301 NSTRDE 306
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 162 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 221
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 222 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 275
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 276 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 321
Query: 301 NSTRDE 306
           +   DE
Sbjct: 322 HDPDDE 327

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 207 CIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 260
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 261 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 251 CIMGEMVRHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 304
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 305 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 301 NSTRDE 306
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++  + 
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQEDLNC 256
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +LK    L        +     F   D++   + L  +L F P KR   +Q L HP+L
Sbjct: 257 GINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYL 315
Query: 298 SLRNSTRDE 306
           +      DE
Sbjct: 316 AQYYDPSDE 324

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 301 NSTRDE 306
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 207 CIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 260
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 261 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 237
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 218 IMAELLQGKALF---PGSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 271
Query: 238 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 272 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 313
Query: 297 LSLRNSTRDETKNKSNVEKVDVGMSKLE 324
            S  +   DE + +   E V+     LE
Sbjct: 314 FSQYHDPEDEPEAEPYDESVEAKERTLE 341

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 261
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 301 NSTRDE 306
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 206 CIMGEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +   K +  D L       ++  A +  + L  +L   P KR +    LQHP++++
Sbjct: 260 AGLTFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 153 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 212
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 213 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 252
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 253 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 309
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 310 LAHPYLEQYYDPSDE 324

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLAQM 271
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 272 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 317
Query: 301 NSTRDE 306
           +   DE
Sbjct: 318 HDPDDE 323

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 159 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 218
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 219 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 258
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 259 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 315
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 316 LAHPYLEQYYDPSDE 330

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 156 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSID 215
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 216 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 255
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 256 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 312
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 313 LAHPYLEQYYDPSDE 327

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 171 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 230
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
              E+ TG  LF  K         D+L  + ++       + + G    ++  +  D  +
Sbjct: 231 IMAEMLTGKTLFKGK---------DYLDQLTQI-------LKVTGVPGTEFVQKLND--K 272
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAR---EFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
             +    SL +    +  F++   R   + A+ L  +L+   +KR TA Q L HP+    
Sbjct: 273 AAKSYIQSLPQ--TPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPF 330
Query: 301 NSTRDETKNK 310
               +ET+ +
Sbjct: 331 RDPEEETEAQ 340

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 153 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 212
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
              E+ TG  LF    G+ +    D L  ++++ G +P    +     K        L +
Sbjct: 213 IMAEMLTGKTLF---KGKDYL---DQLTQILKVTG-VPGTEFVQKLNDKAAKSYIQSLPQ 265
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
             R  F  L         F     +  A+ L  +L+   +KR TA Q L HP+       
Sbjct: 266 TPRKDFTQL---------FPRASPQA-ADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP 315
Query: 304 RDETKNK 310
            +ET+ +
Sbjct: 316 EEETEAQ 322

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 301 NSTRDE 306
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 149 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 208
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 209 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 248
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 249 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 305
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 306 LAHPYLEQYYDPSDE 320

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 151 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 210
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 211 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 251 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 307
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 308 LAHPYLEQYYDPSDE 322

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 175 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 234
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 235 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 288
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 289 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 334
Query: 301 NSTRDE 306
           +   DE
Sbjct: 335 HDPDDE 340

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 172 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 231
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 232 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 285
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 286 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 331
Query: 301 NSTRDE 306
           +   DE
Sbjct: 332 HDPDDE 337

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 171 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 230
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 231 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 284
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 285 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 330
Query: 301 NSTRDE 306
           +   DE
Sbjct: 331 HDPDDE 336

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 301 NSTRDE 306
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 271
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 272 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 317
Query: 301 NSTRDE 306
           +   DE
Sbjct: 318 HDPDDE 323

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 156 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 215
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 216 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 255
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 256 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 312
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 313 LAHPYLEQYYDPSDE 327

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 157 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 216
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 217 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 256
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 257 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 313
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 314 LAHPYLEQYYDPSDE 328

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 148 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 207
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 208 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 247
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 248 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 304
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 305 LAHPYLEQYYDPSDE 319

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 271
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 272 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 317
Query: 301 NSTRDE 306
           +   DE
Sbjct: 318 HDPDDE 323

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 125 KPERCL-DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L +  D   K+ DFG+A +   ++     I +R YRAPE++L A  Y+ S+D+WS
Sbjct: 168 KPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAXICSRFYRAPELMLGATEYTPSIDLWS 227
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR--- 237
             C   EL  G  LF+ ++                 I ++ R I I G  +K+   R   
Sbjct: 228 IGCVFGELILGKPLFSGETS----------------IDQLVRIIQIMGTPTKEQMIRMNP 271
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           H    R   LK     ++L       E       + L  +L + P+ R    + + HP+ 
Sbjct: 272 HYTEVRFPTLKAKDWRKIL------PEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFF 325
Query: 298 -SLRNSTRDETKNKSN 312
             LRNS   E KN SN
Sbjct: 326 DHLRNSYESEVKNNSN 341

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 163 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 222
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 223 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 276
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 277 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 322
Query: 301 NSTRDE 306
           +   DE
Sbjct: 323 HDPDDE 328

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 301 NSTRDE 306
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 301 NSTRDE 306
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 164 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 223
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 224 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 277
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 278 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 323
Query: 301 NSTRDE 306
           +   DE
Sbjct: 324 HDPDDE 329

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 301 NSTRDE 306
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 150 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 209
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 210 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 263
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 264 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 309
Query: 301 NSTRDE 306
           +   DE
Sbjct: 310 HDPDDE 315

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+ S++    
Sbjct: 215 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPSQE---- 254
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 255 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 311
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 312 LAHPYLEQYYDPSDE 326

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +     +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 208 IMAELLTGRTLF-PGT-----DHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 261
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 262 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 307
Query: 301 NSTRDE 306
           +   DE
Sbjct: 308 HDPDDE 313

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 30/189 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 158 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 217
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      L
Sbjct: 218 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQ---SL 268
Query: 242 KRIRRLKFWSL----DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            ++ ++ F ++    + L VD               L  +L    +KR TA Q L H + 
Sbjct: 269 TQMPKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYF 314
Query: 298 SLRNSTRDE 306
           +  +   DE
Sbjct: 315 AQYHDPDDE 323

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 301 NSTRDE 306
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 175 KPSNLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 234
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 235 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 288
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 289 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 334
Query: 301 NSTRDE 306
           +   DE
Sbjct: 335 HDPDDE 340

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 149 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 208
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 209 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 262
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 263 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 308
Query: 301 NSTRDE 306
           +   DE
Sbjct: 309 HDPDDE 314

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 157 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 216
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 217 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 270
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 271 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 316
Query: 301 NSTRDE 306
           +   DE
Sbjct: 317 HDPDDE 322

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 151 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 210
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 211 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 264
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 265 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 310
Query: 301 NSTRDE 306
           +   DE
Sbjct: 311 HDPDDE 316

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 154 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 213
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 214 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 267
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 268 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 313
Query: 301 NSTRDE 306
           +   DE
Sbjct: 314 HDPDDE 319

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 149 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 208
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 209 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 262
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 263 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 308
Query: 301 NSTRDE 306
           +   DE
Sbjct: 309 HDPDDE 314

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   +++DFG A +A+++    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 150 KPSNVAVNEDCELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 209
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIA-IGGAQSKDYFDR---- 237
              EL  G  LF    G  +    D L  +ME++G   P  +A I    ++ Y       
Sbjct: 210 IMAELLQGKALF---PGSDYI---DQLKRIMEVVGTPSPEVLAKISSEHARTYIQSLPPM 263
Query: 238 -HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL  I    F   + L +D               L  +L    ++R +A + L H +
Sbjct: 264 PQKDLSSI----FRGANPLAID--------------LLGRMLVLDSDQRVSAAEALAHAY 305
Query: 297 LSLRNSTRDETKNKSNVEKVDVGMSKLE 324
            S  +   DE + +   E V+     LE
Sbjct: 306 FSQYHDPEDEPEAEPYDESVEAKERTLE 333

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 301 NSTRDE 306
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 213 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
               E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 VIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 214 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 257
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 258 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 317
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 318 QHPYINV 324

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 155 KPSNIVVKSDCTLKILDFGLARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVG 214
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+  G +LF            DH+    ++I ++       G    ++  +     
Sbjct: 215 CIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPCPEFMKKLQPTV 258
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 259 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 318
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 319 QHPYINV 325

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       ++Y +     
Sbjct: 213 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPAFMKKLQPTVRNYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 267 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 323

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 301 NSTRDE 306
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 28/187 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
               E+  G +LF            DH+    ++I ++       G  S ++  +     
Sbjct: 213 VIMGEMIKGGVLFP---------GTDHIDQWNKVIEQL-------GTPSPEFMKKLQPTV 256
Query: 243 RI---RRLKF--WSLDRLLVDKYRFSETD-----AREFAEFLVPLLDFTPEKRPTAQQCL 292
           R     R K+  +S ++L  D    ++++     A +  + L  +L     KR +  + L
Sbjct: 257 RTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEAL 316
Query: 293 QHPWLSL 299
           QHP++++
Sbjct: 317 QHPYINV 323

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 301 NSTRDE 306
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 219 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 272
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 273 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 318
Query: 301 NSTRDE 306
           +   DE
Sbjct: 319 HDPDDE 324

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F    E+ TR YRAPEVIL  GY  +VD+WS  
Sbjct: 153 KPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVG 212
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 213 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY 266
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 267 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 323

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++D+G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 36/195 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ------FAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 149 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 208
Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F    G+ + +  +H+             + I G+  ++    
Sbjct: 209 IWSVGCILAEMLSNRPIFP---GKHYLDQLNHI-------------LGILGSPEQE---- 248
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYR------FSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
             DL  I  LK  +    L  K +      F   D++   + L  +L F P KR   +Q 
Sbjct: 249 --DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQA 305
Query: 292 LQHPWLSLRNSTRDE 306
           L HP+L       DE
Sbjct: 306 LAHPYLEQYYDPSDE 320

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DFG     + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 237
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 296
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 297 L 297
Sbjct: 300 F 300

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 237
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 296
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 297 L 297
Sbjct: 300 F 300

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 35/181 (19%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L     + K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 147 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDR 237
           C   E+     LF   S      D D L  ++++IG       PR +A+           
Sbjct: 207 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP---------- 250
Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPW 296
                   R  F S     ++K+    TD  E   + L+  L F P KR +A   L HP+
Sbjct: 251 --------RQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299
Query: 297 L 297
Sbjct: 300 F 300

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ TG  LF      G  +D+           ++P+  +I G  +        
Sbjct: 205 SIGCIFAEMITGKPLFP-----GVTDDD-----------QLPKIFSILGTPNPR------ 242
Query: 240 DLKRIRRLKFWSLDRLLV-DKYRFSETD---AREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           +  +++ L  W      V +K  +S       +E  + L  +L F P KR +A+  + HP
Sbjct: 243 EWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHP 302
Query: 296 WL 297
           + 
Sbjct: 303 YF 304

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++ FG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 34/183 (18%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRH 238
           S  C   E+ TG  LF   +      D+D L  +  ++G   PR                
Sbjct: 205 SIGCIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPR---------------- 242
Query: 239 GDLKRIRRLKFWSLDRLLV-DKYRFSETD---AREFAEFLVPLLDFTPEKRPTAQQCLQH 294
            +  +++ L  W      V +K  +S       +E  + L  +L F P KR +A+  + H
Sbjct: 243 -EWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301
Query: 295 PWL 297
           P+ 
Sbjct: 302 PYF 304

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 158 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVG 217
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 218 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY 271
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 272 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 328

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++DF  A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDFYLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF P +        D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLF-PGTDHI-----DQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 10/178 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF--AEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 147 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK-MPRKIAIGGAQSKDYFDRHGDL 241
           C   E+    +LF    G+ +    D    ++E +G   P  +       + Y +     
Sbjct: 207 CIMGEMVCHKILFP---GRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKY 260
Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
                 K +  D L       ++  A +  + L  +L     KR +  + LQHP++++
Sbjct: 261 AGYSFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV 317

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 125 KPERCL-DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 180
           KP+  L D      K++DFG+A    A +     I +R YRAPE+I  A  Y+ ++D+WS
Sbjct: 168 KPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWS 227
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   EL  G  LF  +SG       D L  +++++G   R+       + +Y +    
Sbjct: 228 TGCVMAELMQGQPLFPGESGI------DQLVEIIKVLGTPSREQI--KTMNPNYMEH--K 277
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +IR   F  +         F      +  + +  LL++TP  R TA + L HP+ 
Sbjct: 278 FPQIRPHPFSKV---------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFF 325

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFAC 183
           KP       D   K++D G A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 152 KPSNLAVNEDCELKILDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF         +  D L L++ L+G    ++   I    +++Y      +
Sbjct: 212 IMAELLTGRTLFPG------TDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM 265
Query: 242 KRIRRLK-FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            ++     F   + L VD               L  +L    +KR TA Q L H + +  
Sbjct: 266 PKMNFANVFIGANPLAVD--------------LLEKMLVLDSDKRITAAQALAHAYFAQY 311
Query: 301 NSTRDE 306
           +   DE
Sbjct: 312 HDPDDE 317

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 121/323 (37%), Gaps = 82/323 (25%)
Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +VLE       +L +   Y  L    ++ +   +L G+ Y+H   GI+H DLKP N L+ 
Sbjct: 134 VVLEIADSDFKKLFRTPVY--LTELHIKTLLYNLLVGVKYVH-SAGILHRDLKPANCLV- 189
Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEXXXXXXXXXXXXNISIRRASMGG 120
              D S      GL   ++ PE   NG S                     IS R   M  
Sbjct: 190 -NQDCSVKVCDFGLARTVDYPE---NGNSQ------------------LPISPREDDMN- 226
Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVI-LRAGYSFSVDMW 179
                             +V F +     +Q    + TR YRAPE+I L+  Y+ ++D+W
Sbjct: 227 ------------------LVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVW 268
Query: 180 SFACTAFELAT-----------------GDMLF--AP--KSGQGFC----EDEDHLALMM 214
           S  C   EL                   G   F  +P  K+G  F      + D L ++ 
Sbjct: 269 SIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIF 328
Query: 215 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFL 274
            ++G  P +  I   + +       D KR  R+        L +++  S  DA      L
Sbjct: 329 NILG-TPSEEDIEALEKE-------DAKRYIRIFPKREGTDLAERFPASSADA---IHLL 377
Query: 275 VPLLDFTPEKRPTAQQCLQHPWL 297
             +L F P KR T  +CL HP+ 
Sbjct: 378 KRMLVFNPNKRITINECLAHPFF 400

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 152 FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQG-------- 202
             + + TR YRAPE++L    Y+  +DMWS  C   E+  G  +F   S           
Sbjct: 187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGV 246
Query: 203 --FCEDED----HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 256
             F  +ED           +I  +  K+ I  +  +D F +            W    L 
Sbjct: 247 IDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTK------------WKNLLLK 294
Query: 257 VDKYRFSETDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
           ++     + D  E A + L  LL F P KR +A   L+HP++S+ ++  +E
Sbjct: 295 IN----PKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFHNPNEE 341

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 179
           KP+  L       K+ DFG A RA     K +  E+ T  YR P+++L    YS  +DMW
Sbjct: 127 KPQNLLINERGELKLADFGLA-RAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMW 185
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
              C  +E+ATG  LF P S       E+ L  +  ++G  P +    G  S + F  + 
Sbjct: 186 GVGCIFYEMATGRPLF-PGSTV-----EEQLHFIFRILG-TPTEETWPGILSNEEFKTYN 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             K       +  + LL    R  ++D    A+ L  LL F    R +A+  ++HP+ 
Sbjct: 239 YPK-------YRAEALLSHAPRL-DSDG---ADLLTKLLQFEGRNRISAEDAMKHPFF 285

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 25/180 (13%)
Query: 134 DMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAF 186
           D+  K+ DFG A   +  ++      E + T+ YR+P ++L    Y+ ++DMW+  C   
Sbjct: 157 DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 216
Query: 187 ELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR 246
           E+ TG  LFA         + + + L++E I  +  +            DR   L  I  
Sbjct: 217 EMLTGKTLFAG------AHELEQMQLILESIPVVHEE------------DRQELLSVIPV 258
Query: 247 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
                +        +     +RE  +FL  +L F+P  R TA++ L HP++S+ +   DE
Sbjct: 259 YIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDE 318

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 76/179 (42%), Gaps = 31/179 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L       K+ DFG A   + Q A +  + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L       K+ DFG A   + Q   A  + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALAPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L       K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 147 KPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVG 206
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 207 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 250
Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 251 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 300

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L       K+ DFG A   + Q A    + T  YRAPEV+L++ Y+  VDMWS  
Sbjct: 139 KPENILVTSGGTVKLADFGLARIYSYQMALFPVVVTLWYRAPEVLLQSTYATPVDMWSVG 198
Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      + D L  + +LIG  P          +D + R   L 
Sbjct: 199 CIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPP----------EDDWPRDVSLP 242
Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREF----AEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           R                 R  ++   E     A+ L+ +L F P KR +A + LQH +L
Sbjct: 243 R---------GAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 59/221 (26%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRAN-------------------------KQFAEEIQTR 159
           KP  CL   D   KV DFG A   N                         KQ    + TR
Sbjct: 156 KPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTR 215
Query: 160 QYRAPEVI-LRAGYSFSVDMWSFAC-----------------TAFELATGDMLF--APKS 199
            YRAPE+I L+  Y+ S+D+WS  C                   F L  G   F  +P  
Sbjct: 216 WYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDR 275
Query: 200 GQGFCEDE---DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLL 256
                 ++   D L ++  +I          G  ++D        + I+ +K +   + +
Sbjct: 276 NSKKVHEKSNRDQLNIIFNII----------GTPTEDDLKNINKPEVIKYIKLFPHRKPI 325
Query: 257 VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             K ++    + +    L  +L F P KR T  Q L HP+L
Sbjct: 326 NLKQKYPSI-SDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 88/248 (35%), Gaps = 75/248 (30%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRAN----------------------------KQFAEEI 156
           KP  CL   D   K+ DFG A   N                            KQ    +
Sbjct: 158 KPANCLLNQDCSVKICDFGLARTINSDKDIHIVNDLEEKEENEEPGPHNKNLKKQLTSHV 217
Query: 157 QTRQYRAPEVI-LRAGYSFSVDMWSFAC-----------------TAFELATGDMLF--A 196
            TR YRAPE+I L+  Y+ S+D+WS  C                   F L  G   F  +
Sbjct: 218 VTRWYRAPELILLQENYTNSIDIWSTGCIFAELLNMMKSHINNPTNRFPLFPGSSCFPLS 277
Query: 197 PKSGQGFCEDE---DHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLD 253
           P        ++   D L ++  +IG  P +                DLK I + +     
Sbjct: 278 PDHNSKKVHEKSNRDQLNIIFNVIGTPPEE----------------DLKCITKQEVIKYI 321
Query: 254 RLL-----VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 308
           +L      +D  +   + ++E  + L  +L F  +KR T  + L HP+L      R E  
Sbjct: 322 KLFPTRDGIDLSKKYSSISKEGIDLLESMLRFNAQKRITIDKALSHPYLK---DVRKENL 378
Query: 309 NKSNVEKV 316
              + EK+
Sbjct: 379 ENFSTEKI 386

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 241
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 240
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KPE  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPENLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KPE  L   +   K+ DFG    A    K+      T +Y APEV+ R G+S S D WS+
Sbjct: 157 KPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSY 216
Query: 182 ACTAFELATGDMLFAPK 198
               FE+ TG + F  K
Sbjct: 217 GVLMFEMLTGSLPFQGK 233

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 117 SMGGIELPKPERC----------LDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAP 164
           S+G + LP    C          ++  D   K+ DFG+A +   ++     I +R YRAP
Sbjct: 141 SIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAP 200
Query: 165 EVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
           E+I     Y+ +VD+WS  C   E+  G+ +F   +  G       L  ++ ++G   R+
Sbjct: 201 ELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG------QLHEIVRVLGCPSRE 254
Query: 224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE 283
           +      S    D +   K I     WS   +  D    S  DA+E  + L  LL + PE
Sbjct: 255 VLRKLNPSHTDVDLYNS-KGIP----WS--NVFSDH---SLKDAKEAYDLLSALLQYLPE 304
Query: 284 KRPTAQQCLQHPWL 297
           +R    + L HP+ 
Sbjct: 305 ERMKPYEALCHPYF 318

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 137 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIW 195
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 196 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 246
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 247 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 294

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 137 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 195
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 196 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 246
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 247 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 294

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L    YS +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +C A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 304 RDETKNKSNVEK 315
              ++NK +  K
Sbjct: 268 PSNSQNKESASK 279

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 134 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 192
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 193 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 243
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 244 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 291

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 241
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 25/179 (13%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 134 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIW 192
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 193 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 243
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+  
Sbjct: 244 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFFQ 292

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 133 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 191
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 192 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 242
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 243 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 290

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 241
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     +++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 236
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 297 LSLRN 301
               N
Sbjct: 284 FKENN 288

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 132 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 190
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 191 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLG-TPDEVVWPGVTSMP--DYKP 241
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 242 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 289

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 131 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 189
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 190 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 240
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 241 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 288

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 130 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 188
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 189 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 239
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 240 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDMW 179
           KP+  L   +   K+ DFG A RA     + +  E+ T  YRAPE++L   Y S +VD+W
Sbjct: 129 KPQNLLINTEGAIKLADFGLA-RAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIW 187
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+ T   LF   S      + D L  +   +G  P ++   G  S    D   
Sbjct: 188 SLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGT-PDEVVWPGVTSMP--DYKP 238
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              +  R  F  +   L       + D R     L  +L + P KR +A+  L HP+ 
Sbjct: 239 SFPKWARQDFSKVVPPL-------DEDGR---SLLSQMLHYDPNKRISAKAALAHPFF 286

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     +++  E+ T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 236
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 297 LSLRN 301
               N
Sbjct: 284 FKENN 288

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 125 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 170
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSA 198
Query: 171 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 226
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIGT-PHSDNDLRCI 251
Query: 227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 286
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 287 TAQQCLQHPWLSLRNSTRDE 306
           TA++ L+HP+L   +   DE
Sbjct: 299 TAKEALEHPYLQTYHDPNDE 318

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 31/185 (16%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     +++  E+ T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIW 185
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY---FD 236
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y   F 
Sbjct: 186 SVGCIFAEMVNGAPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
            +  L     LK   LD   +D               L  +L   P +R TA+Q L+H +
Sbjct: 240 VYEPLPWESFLK--GLDESGID--------------LLSKMLKLDPNQRITAKQALEHAY 283
Query: 297 LSLRN 301
               N
Sbjct: 284 FKENN 288

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNA-----CRANKQF--AEEIQTRQYRAPEVILRAG-YSFSV 176
           KP   L   +   K+ DFG A       A  Q+   E + TR YRAPE++L    Y+ ++
Sbjct: 185 KPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAI 244
Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 234
           D+WS  C   E+     LF    G+ +      L L+M ++G     +  A+G  + + Y
Sbjct: 245 DLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPSPAVIQAVGAERVRAY 298
Query: 235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                     R+   W       D+   S          L  +L F P  R +A   L+H
Sbjct: 299 IQSLPP----RQPVPWETVYPGADRQALS---------LLGRMLRFEPSARISAAAALRH 345
Query: 295 PWLSLRNSTRDE 306
           P+L+  +   DE
Sbjct: 346 PFLAKYHDPDDE 357

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 29/192 (15%)
Query: 125 KPERCLDGIDMRCKVVDFGNA-----CRANKQF--AEEIQTRQYRAPEVILRAG-YSFSV 176
           KP   L   +   K+ DFG A       A  Q+   E + TR YRAPE++L    Y+ ++
Sbjct: 186 KPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAI 245
Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDY 234
           D+WS  C   E+     LF    G+ +      L L+M ++G     +  A+G  + + Y
Sbjct: 246 DLWSVGCIFGEMLARRQLF---PGKNYVH---QLQLIMMVLGTPSPAVIQAVGAERVRAY 299
Query: 235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                     R+   W       D+   S          L  +L F P  R +A   L+H
Sbjct: 300 IQSLPP----RQPVPWETVYPGADRQALS---------LLGRMLRFEPSARISAAAALRH 346
Query: 295 PWLSLRNSTRDE 306
           P+L+  +   DE
Sbjct: 347 PFLAKYHDPDDE 358

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 125 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 170
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSA 198
Query: 171 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 226
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIGT-PHSDNDLRCI 251
Query: 227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 286
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 287 TAQQCLQHPWLSLRNSTRDE 306
           TA++ L+HP+L   +   DE
Sbjct: 299 TAKEALEHPYLQTYHDPNDE 318

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 138 KVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 192
           K+ DFG A RA     +QF  EI T  YR PE++L +  YS SVD+WS AC   E+    
Sbjct: 177 KIGDFGLA-RAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235
Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 252
            LF   S      + D L  + E++G +P      G  +   + +     R + LK    
Sbjct: 236 PLFPGDS------EIDQLFKIFEVLG-LPDDTTWPGVTALPDWKQSFPKFRGKTLK---- 284
Query: 253 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
            R+L            E  + L  +L+  P KR +A+  L+HP+ S
Sbjct: 285 -RVL------GALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFS 323

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 66/181 (36%), Gaps = 52/181 (28%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 176
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 210
Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 211 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 258
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 259 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 286
Query: 297 L 297
Sbjct: 287 F 287

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 52/182 (28%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 176
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 138 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 197
Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 198 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 245
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 246 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 273
Query: 297 LS 298
Sbjct: 274 FQ 275

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 180
           KPE  L       K+ DFG A       + + +E+ TR YRAPE+++    Y  +VD+W+
Sbjct: 151 KPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWA 210
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PRKIAIGGAQSKDYFDRHG 239
             C   E+  G+ LF   S      D D L  +M  +G + PR         ++ F+++ 
Sbjct: 211 IGCLVTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPR--------HQELFNKNP 256
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
               +R  +    + L     + SE       +     L   P+KRP   + L H +  +
Sbjct: 257 VFAGVRLPEIKEREPLERRYPKLSEV----VIDLAKKCLHIDPDKRPFCAELLHHDFFQM 312

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 53/204 (25%)
Query: 125 KPERCL---DGIDMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     + L +G   F  K                                     + + 
Sbjct: 207 SAGVILYILLSGTPPFYGK-------------------------------------NEYD 229
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
            LKR+   K ++ D   + ++R    DA++    +  +L F P  R TA QCL+HPW+  
Sbjct: 230 ILKRVETGK-YAFD---LPQWRTISDDAKDL---IRKMLTFHPSLRITATQCLEHPWIQK 282
Query: 300 RNSTRDETKNKSNVEKVDVGMSKL 323
            +S   ET   S++  ++  M+ +
Sbjct: 283 YSS---ETPTISDLPSLESAMTNI 303

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 125 KPERCLDGIDMRCKVVDFG-----------NACRANKQ--FAEEIQTRQYRAPEVIL-RA 170
           KP   L   +   KV DFG           N+    +Q    E + TR YRAPEV+L  A
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSA 198
Query: 171 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI----AI 226
            YS ++D+WS  C   EL     +F    G+ +      L L+  +IG  P        I
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFP---GRDY---RHQLLLIFGIIGT-PHSDNDLRCI 251
Query: 227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 286
              ++++Y         I+ L  +    L   +  F   + +   + L  +L F P KR 
Sbjct: 252 ESPRAREY---------IKSLPMYPAAPL---EKMFPRVNPKGI-DLLQRMLVFDPAKRI 298
Query: 287 TAQQCLQHPWLSLRNSTRDE 306
           TA++ L+HP+L   +   DE
Sbjct: 299 TAKEALEHPYLQTYHDPNDE 318

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 153 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 182 ACTAFELATGDMLFAPK 198
               FE+ TG + F  K
Sbjct: 213 GVLMFEMLTGTLPFQGK 229

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLMIDQQGYIKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 154 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 213
Query: 182 ACTAFELATGDMLFAPK 198
               FE+ TG + F  K
Sbjct: 214 GVLMFEMLTGTLPFQGK 230

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 185 AFELATG 191
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       KV DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIKVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 161 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 220
Query: 185 AFELATG 191
            +E+A G
Sbjct: 221 IYEMAAG 227

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 125 KPERCLDGIDMRCKVVDFG---NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KPE  L   +   K+ DFG    +    K+      T +Y APEV+ R G++ S D WSF
Sbjct: 153 KPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSF 212
Query: 182 ACTAFELATGDMLFAPK 198
               FE+ TG + F  K
Sbjct: 213 GVLMFEMLTGTLPFQGK 229

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 185 AFELATG 191
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 161 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 220
Query: 185 AFELATG 191
            +E+A G
Sbjct: 221 IYEMAAG 227

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 154 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 213
Query: 185 AFELATG 191
            +E+A G
Sbjct: 214 IYEMAAG 220

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 163 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 222
Query: 185 AFELATG 191
            +E+A G
Sbjct: 223 IYEMAAG 229

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   +   K+ DFG A RA     + ++ E+ T  YR P+V+  A  YS S+DMW
Sbjct: 128 KPQNLLINRNGELKLADFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMW 186
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   ELA       P +     + +D L  +  L+G    +      +  DY     
Sbjct: 187 SAGCIFAELANAARPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDY----- 236
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                +    +     LV+         R   + L  LL   P +R +A++ LQHP+ S
Sbjct: 237 -----KPYPMYPATTSLVNVVPKLNATGR---DLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 169 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 228
Query: 185 AFELATG 191
            +E+A G
Sbjct: 229 IYEMAAG 235

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 155 KPENLLIDEQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 214
Query: 185 AFELATG 191
            +E+A G
Sbjct: 215 IYEMAAG 221

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R          T +Y APE+IL  GY+ +VD W+    
Sbjct: 189 KPENLLIDQQGYIQVTDFGFAKRVKGATWTLCGTPEYLAPEIILSKGYNKAVDWWALGVL 248
Query: 185 AFELATG 191
            +E+A G
Sbjct: 249 IYEMAAG 255

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +  E   T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 267 PSNCQNKESASK 278

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 47/171 (27%)
Query: 134 DMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
           D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+WS     + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYILLSG 218
Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              F  K                                     + +  LKR+   K+ +
Sbjct: 219 TPPFYGK-------------------------------------NEYDILKRVETGKY-A 240
Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
            D   + ++R    DA+   + +  +L F P  R TA QCL+HPW+   +S
Sbjct: 241 FD---LPQWRTISDDAK---DLIRKMLTFHPSLRITATQCLEHPWIQKYSS 285

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 47/171 (27%)
Query: 134 DMRCKVVDFG-NAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
           D   K++DFG + C + N +  + I T  Y APEV LR  Y    D+WS     + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYILLSG 218
Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              F  K                                     + +  LKR+   K+ +
Sbjct: 219 TPPFYGK-------------------------------------NEYDILKRVETGKY-A 240
Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
            D   + ++R    DA+   + +  +L F P  R TA QCL+HPW+   +S
Sbjct: 241 FD---LPQWRTISDDAK---DLIRKMLTFHPSLRITATQCLEHPWIQKYSS 285

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 48/165 (29%)
Query: 136 RCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD 192
             K+ DFG A +     A+    I T  + APEVI   GY+   D+WS   TA E+A G 
Sbjct: 163 HAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGK 222
Query: 193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSL 252
             +A          + H    + +I   P                       R+ + WS 
Sbjct: 223 PPYA----------DIHPMRAIFMIPTNPPPT-------------------FRKPELWS- 252
Query: 253 DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                            F +F+   L  +PE+R TA Q LQHP++
Sbjct: 253 ---------------DNFTDFVKQCLVKSPEQRATATQLLQHPFV 282

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 221 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 269
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 270 PSNCQNKESASK 281

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLMIDQQGYIQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 65/181 (35%), Gaps = 52/181 (28%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 176
           KPE  L   DM  K+ DFG +C+ +  ++      T  Y APE+I         GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLRSVCGTPSYLAPEIIECSMNDNHPGYGKEV 210
Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           DMWS     + L  G   F  +             LM+ +I  M      G  +  DY D
Sbjct: 211 DMWSTGVIMYTLLAGSPPFWHRKQM----------LMLRMI--MSGNYQFGSPEWDDYSD 258
Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              DL          + R LV                        P+KR TA++ L HP+
Sbjct: 259 TVKDL----------VSRFLV----------------------VQPQKRYTAEEALAHPF 286
Query: 297 L 297
Sbjct: 287 F 287

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +++A G
Sbjct: 228 IYQMAAG 234

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
           KP+  L   +   K+ +FG A RA     + ++ E+ T  YR P+V+  A  YS S+DMW
Sbjct: 128 KPQNLLINRNGELKLANFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMW 186
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   ELA       P +     + +D L  +  L+G    +      +  DY     
Sbjct: 187 SAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDY----- 236
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                +    +     LV+         R   + L  LL   P +R +A++ LQHP+ S
Sbjct: 237 -----KPYPMYPATTSLVNVVPKLNATGR---DLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 148 ANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED 206
           ANK     +  R YRAPE++++  G++  VDMWS  C   E+     LF    G  F   
Sbjct: 188 ANK--THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF---RGSTFY-- 240
Query: 207 EDHLALMMELIG--KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 264
            + L  ++E++G  K+   +      ++DY                SL  +    +    
Sbjct: 241 -NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRN-------------SLSNVPARAWTAVV 286
Query: 265 TDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWL 297
             A   A + +  +L+F P++R + +Q L+HP+ 
Sbjct: 287 PTADPVALDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 148 ANKQFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED 206
           ANK     +  R YRAPE++++  G++  VDMWS  C   E+     LF    G  F   
Sbjct: 188 ANK--THYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF---RGSTFY-- 240
Query: 207 EDHLALMMELIG--KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE 264
            + L  ++E++G  K+   +      ++DY                SL  +    +    
Sbjct: 241 -NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRN-------------SLSNVPARAWTAVV 286
Query: 265 TDAREFA-EFLVPLLDFTPEKRPTAQQCLQHPWL 297
             A   A + +  +L+F P++R + +Q L+HP+ 
Sbjct: 287 PTADPVALDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 124 PKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           P P+R +       K++D G A   ++     E + T QY APE++ +  Y+ +VD WSF
Sbjct: 157 PGPQRLIH------KIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSF 210
Query: 182 ACTAFELATGDMLFAP 197
              AFE  TG   F P
Sbjct: 211 GTLAFECITGFRPFLP 226

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 124 PKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           P P+R +       K++D G A   ++     E + T QY APE++ +  Y+ +VD WSF
Sbjct: 156 PGPQRLIH------KIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSF 209
Query: 182 ACTAFELATGDMLFAP 197
              AFE  TG   F P
Sbjct: 210 GTLAFECITGFRPFLP 225

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A     +++  T  Y  PE+I    +   VD+WS   
Sbjct: 161 KPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 221 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 243
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 244 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 292
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 293 PSNCQNKESASK 304

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           DM  K+ DFG A +     ++  +   T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 162 DMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLV 221
Query: 191 GDMLF 195
           G   F
Sbjct: 222 GKPPF 226

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 70/182 (38%), Gaps = 58/182 (31%)
Query: 125 KPERCL---DGIDMRCKVVDFG-NACRAN-KQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K+VDFG +A   N K+  E + T  Y APEV LR  Y    D+W
Sbjct: 163 KPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVW 221
Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     F L  G   + P  GQ    D++ L           RK+  G            
Sbjct: 222 SIGVILFILLAG---YPPFGGQT---DQEIL-----------RKVEKG------------ 252
Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE----FLVPLLDFTPEKRPTAQQCLQHP 295
                              KY F   + +  +E     +  +L F  ++R +AQQ L+HP
Sbjct: 253 -------------------KYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHP 293
Query: 296 WL 297
           W+
Sbjct: 294 WI 295

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  +       +V DFG A R   +      T +Y APE+I+  GY+ +VD W+    
Sbjct: 168 KPENLIIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           DM  K+ DFG A +     ++  +   T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 178 DMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLV 237
Query: 191 GDMLF 195
           G   F
Sbjct: 238 GKPPF 242

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 134 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 188
           DM  K+ DFG A +   +F  E +     T  Y APEV+ + G+SF VD+WS  C  + L
Sbjct: 178 DMDVKIGDFGLATKI--EFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTL 235
Query: 189 ATGDMLF 195
             G   F
Sbjct: 236 LVGKPPF 242

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 134 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 188
           DM  K+ DFG A +   +F  E +     T  Y APEV+ + G+SF VD+WS  C  + L
Sbjct: 178 DMDVKIGDFGLATKI--EFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTL 235
Query: 189 ATGDMLF 195
             G   F
Sbjct: 236 LVGKPPF 242

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWS 180
           KPE  L       K+ DFG A      +  + +E+ TR YR+PE+++    Y   VD+W+
Sbjct: 129 KPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWA 188
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKM-PR 222
             C   EL +G  L+  KS      D D L L+ + +G + PR
Sbjct: 189 IGCVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPR 225

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +Y AP +IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A     + +  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 196 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 218
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 267
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 54/166 (32%)
Query: 138 KVVDFG------NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
           K+VDFG      +AC    +  E + T +Y APE++     + + DMW+    A+ L T 
Sbjct: 174 KIVDFGMSRKIGHAC----ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229
Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              F  +  Q     E +L +                  + DY +            F S
Sbjct: 230 TSPFVGEDNQ-----ETYLNI---------------SQVNVDYSEE----------TFSS 259
Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           + +L  D              F+  LL   PEKRPTA+ CL H WL
Sbjct: 260 VSQLATD--------------FIQSLLVKNPEKRPTAEICLSHSWL 291

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTRDETKNKSNV 313
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 69/182 (37%), Gaps = 47/182 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNAC--------RANKQFAEEIQTRQYRAPEVILRA-GYSFS 175
           K    L G D   ++ DFG +           NK     + T  + APEV+ +  GY F 
Sbjct: 148 KAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFK 207
Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
            D+WSF  TA ELATG    AP     + +      LM+ L    P      G Q K+  
Sbjct: 208 ADIWSFGITAIELATGA---AP-----YHKYPPMKVLMLTLQNDPPSLET--GVQDKEML 257
Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
            ++G                            + F + +   L   PEKRPTA + L+H 
Sbjct: 258 KKYG----------------------------KSFRKMISLCLQKDPEKRPTAAELLRHK 289
Query: 296 WL 297
           + 
Sbjct: 290 FF 291

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 68/179 (37%), Gaps = 47/179 (26%)
Query: 125 KPERCLDGIDMRCKVVDFGNAC--------RANKQFAEEIQTRQYRAPEVILRA-GYSFS 175
           K    L G D   ++ DFG +           NK     + T  + APEV+ +  GY F 
Sbjct: 143 KAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFK 202
Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
            D+WSF  TA ELATG    AP     + +      LM+ L    P      G Q K+  
Sbjct: 203 ADIWSFGITAIELATGA---AP-----YHKYPPMKVLMLTLQNDPPSLET--GVQDKEML 252
Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
            ++G                            + F + +   L   PEKRPTA + L+H
Sbjct: 253 KKYG----------------------------KSFRKMISLCLQKDPEKRPTAAELLRH 283

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 267 PSNCQNKESASK 278

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTRDETKNKSNV 313
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 177 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 236
Query: 191 GDMLF 195
           G   F
Sbjct: 237 GKPPF 241

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++     S S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSASKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 137 KPENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 197 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 219
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 220 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 268
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 269 PSNCQNKESASK 280

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 271
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 221 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 269
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 270 PSNCQNKESASK 281

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 175 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 234
Query: 191 GDMLF 195
           G   F
Sbjct: 235 GKPPF 239

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 57/197 (28%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTRDETKNKS--NVEK 315
           ++ +  ++  S  N+EK
Sbjct: 279 DTQQALSRKASAVNMEK 295

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 191 GDMLF 195
           G   F
Sbjct: 213 GKPPF 217

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 157 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 216
Query: 191 GDMLF 195
           G   F
Sbjct: 217 GKPPF 221

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 153 DLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 212
Query: 191 GDMLF 195
           G   F
Sbjct: 213 GKPPF 217

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+WS   
Sbjct: 161 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 221 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 243
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 244 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 292
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 293 PSNCQNKESASK 304

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE I    +   VD+WS   
Sbjct: 140 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGV 199
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 200 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 222
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 223 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPXLREVLEHPWITANSSK 271
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 272 PSNCQNKESASK 283

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 55/193 (28%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTRDETKNKSNV 313
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 152 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 211
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 212 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 234
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 235 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 283
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 284 PSNCQNKESASK 295

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 157 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 216
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 217 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 253

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 168 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 227
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 228 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 264

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 150 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 209
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 210 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 246

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 49/190 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 304 RDETKNKSNV 313
               +NK + 
Sbjct: 267 PSNCQNKESA 276

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 161 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 220
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 221 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 257

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 161 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 220
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 221 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 257

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D+  K+ DFG A +       +     T  Y APEV+ + G+SF VD+WS  C  + L  
Sbjct: 151 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLV 210
Query: 191 GDMLF 195
           G   F
Sbjct: 211 GKPPF 215

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 153 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 212
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 213 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 249

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +  APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVL 227
Query: 185 AFELATG 191
            +E+A G
Sbjct: 228 IYEMAAG 234

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 7   GDSLLRLIK-YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP 65
           G+ L R++   +R K L    V E+ K ++  L Y H +  ++H DLKPENIL   T   
Sbjct: 105 GELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ-HVVHKDLKPENILFQDTSPH 163
Query: 66  SKDPIR---SGLTPILERPEGSINGGSTS 91
           S  PI+    GL  + +  E S N   T+
Sbjct: 164 S--PIKIIDFGLAELFKSDEHSTNAAGTA 190

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 48/183 (26%)
Query: 125 KPER--CLDGIDMRCKVVDFGNACRANKQFAEEI--QTRQYRAPEVILRAGYSFSVDMWS 180
           KPE   C        K++DFG A + N     ++   T ++ APE++ R    F  DMW+
Sbjct: 176 KPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWA 235
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G    +P +G      ED L                              
Sbjct: 236 IGVLGYVLLSG---LSPFAG------EDDLET---------------------------- 258
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
           L+ ++R   W  D    D +     +A+   +F+  LL   P KR T    L+HPWL   
Sbjct: 259 LQNVKRCD-WEFDE---DAFSSVSPEAK---DFIKNLLQKEPRKRLTVHDALEHPWLKGD 311
Query: 301 NST 303
           +S 
Sbjct: 312 HSN 314

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWS 242
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 243 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 279

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTR 304
           ++ +
Sbjct: 279 DTQQ 282

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 49/189 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +  +   T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSSK 266
Query: 304 RDETKNKSN 312
               +NK +
Sbjct: 267 PSNCQNKES 275

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y D +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQDTY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 218 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSS 265

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 209 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 245

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 162 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 221
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 222 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 258

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 154 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 213
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 214 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 250

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 228 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 287
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 288 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 324

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 180
           KP   L   +   K+ DFG A      N+ +  ++ TR YRAPE++  A  Y   VDMW+
Sbjct: 139 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGVDMWA 198
Query: 181 FACTAFEL 188
             C   EL
Sbjct: 199 VGCILAEL 206

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 177 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 236
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 237 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 273

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTR 304
           ++ +
Sbjct: 279 DTQQ 282

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 187 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 246
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 247 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 283

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 185 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 244
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 245 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 281

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTR 304
           ++ +
Sbjct: 279 DTQQ 282

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 125 KPERCLDGIDMRC-KVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   D    K+ DFG+A +    +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 183 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 242
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK 223
             C   EL  G  +F   SG       D L  +++++G   R+
Sbjct: 243 AGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE 279

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTR 304
           ++ +
Sbjct: 279 DTQQ 282

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTR 304
           ++ +
Sbjct: 279 DTQQ 282

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 151 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 201
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 202 IGVITYILLSGASPFL------------------------------------------GD 219
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 220 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 277
Query: 301 NSTR 304
           ++ +
Sbjct: 278 DTQQ 281

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 55/184 (29%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 151 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 201
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 202 IGVITYILLSGASPFL------------------------------------------GD 219
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 220 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 277
Query: 301 NSTR 304
           ++ +
Sbjct: 278 DTQQ 281

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 55/177 (31%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 64/177 (36%), Gaps = 55/177 (31%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T ++ APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWI 275

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 55/193 (28%)
Query: 123 LPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PKP         R K++DFG A + +   +F     T  + APE++         DMWS
Sbjct: 152 VPKP---------RIKIIDFGLAHKIDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWS 202
Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
                + L +G   F                                           GD
Sbjct: 203 IGVITYILLSGASPFL------------------------------------------GD 220
Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
            K+       +++    D+Y FS T A    +F+  LL   P+KR T Q  LQHPW+  +
Sbjct: 221 TKQETLANVSAVNYEFEDEY-FSNTSALA-KDFIRRLLVKDPKKRMTIQDSLQHPWIKPK 278
Query: 301 NSTRDETKNKSNV 313
           ++ +  ++  S V
Sbjct: 279 DTQQALSRKASAV 291

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 134 DMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           D R K+ DFG   + +K+  +    + T  + APEVI R  Y   VD+WS      E+  
Sbjct: 177 DGRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMID 236
Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
           G+  +          +E  L  M  +   +P ++               DL ++  +   
Sbjct: 237 GEPPYF---------NEPPLQAMRRIRDSLPPRVK--------------DLHKVSSVLRG 273
Query: 251 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
            LD +LV          RE            P +R TAQ+ L HP+L L
Sbjct: 274 FLDLMLV----------RE------------PSQRATAQELLGHPFLKL 300

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSAXKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 138 KVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGD 192
           K+ DFG + R    N        T QY APE+I +   GY  + D+WS  CT  E+ATG 
Sbjct: 163 KISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGK 222
Query: 193 MLF 195
             F
Sbjct: 223 PPF 225

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 49/192 (25%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ +FG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 137 KPENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 197 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 219
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R++F   D        F    AR+    +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 220 ISRVEFTFPD--------FVTEGARDL---ISRLLKHNPSQRPMLREVLEHPWITANSSK 268
Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 269 PSNCQNKESASK 280

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +      + +E + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 138 KVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGD 192
           K+ DFG + R    N        T QY APE+I +   GY  + D+WS  CT  E+ATG 
Sbjct: 149 KISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGK 208
Query: 193 MLF 195
             F
Sbjct: 209 PPF 211

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 160 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSACKS 215
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 216 SDLWALGCIIYQLVAG 231

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 156 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSF----VGTAQYVSPELLTEKSACKS 211
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 212 SDLWALGCIIYQLVAG 227

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 141 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 196
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 197 SDLWALGCIIYQLVAG 212

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANAF----VGTAQYVSPELLTEKSACKS 212
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 156 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 211
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 212 SDLWALGCIIYQLVAG 227

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 137 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 192
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 193 SDLWALGCIIYQLVAG 208

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 212
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 134 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 189
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 190 SDLWALGCIIYQLVAG 205

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 160 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 215
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 216 SDLWALGCIIYQLVAG 231

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 159 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 214
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 215 SDLWALGCIIYQLVAG 230

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 137 CKVVDFGNACR-ANKQFAEE--IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD 192
            K+ DFG A +  + Q      + T  + APEVI ++ Y F  D+WS   TA ELA G+
Sbjct: 155 VKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 213

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 162 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 217
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 218 SDLWALGCIIYQLVAG 233

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 190
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 191 SDLWALGCIIYQLVAG 206

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 136 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 191
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 192 SDLWALGCIIYQLVAG 207

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
Query: 125 KPERCLDGIDMRCKVVDFGNA---------CRANKQFAEEIQTRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A          RAN      + T QY +PE++       S
Sbjct: 164 KPENILLNEDMHIQITDFGTAKVLSPESKQARANXF----VGTAQYVSPELLTEKSACKS 219
Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 220 SDLWALGCIIYQLVAG 235

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 134 DMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+ N     +  E   T  Y APE++L   Y+ SVD WSF    +E+ 
Sbjct: 155 DGHIKIADFG-MCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEML 213
Query: 190 TGDMLFAPKSGQ 201
            G    +P  GQ
Sbjct: 214 IGQ---SPFHGQ 222

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A     +++  T  Y  PE+I    +   VD+WS   
Sbjct: 138 KPENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 198 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 220
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 221 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSS 268

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 1   MVLEFLG-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EF G  S+  LIK ++   L+   +  IC+ IL GL +LH+   +IH D+K +N+LL
Sbjct: 104 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLL 162
Query: 60  VSTID 64
               +
Sbjct: 163 TENAE 167

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 277
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 278 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIK 326
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K + K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAKSKWK 304

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 134 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 147 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 205
Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 206 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 259
Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 288
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 260 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 319
Query: 289 QQCL 292
            +C+
Sbjct: 320 MECV 323

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 49/179 (27%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + + A    T  Y  PE+I    +   VD+WS   
Sbjct: 135 KPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 195 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 217
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 218 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSS 265

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 277
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 278 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIK 326
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K + K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAKSKWK 304

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 45/169 (26%)
Query: 158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           T  Y APEV+ +  YS +VD WS    A+ L  G   + P     F ++ D  A + E I
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG---YPP-----FYDEND--AKLFEQI 230
Query: 218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPL 277
            K   +          Y+D   D  +                            +F+  L
Sbjct: 231 LKAEYEF------DSPYWDDISDSAK----------------------------DFIRHL 256
Query: 278 LDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKLEIK 326
           ++  PEKR T +Q LQHPW++  ++  D+  ++S  E++    +K + K
Sbjct: 257 MEKDPEKRFTCEQALQHPWIA-GDTALDKNIHQSVSEQIKKNFAKSKWK 304

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 134 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 145 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 203
Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 204 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 257
Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 288
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 258 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 317
Query: 289 QQCL 292
            +C+
Sbjct: 318 MECV 321

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 134 DMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWSFACTAFELA 189
           D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W      +E+ 
Sbjct: 146 DGHIKITDFG-LCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMM 204
Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA------IGGAQSKDYFDRHG---- 239
            G + F  +  +   E    L LM E+  + PR +       + G   KD   R G    
Sbjct: 205 CGRLPFYNQDHEKLFE----LILMEEI--RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSE 258
Query: 240 DLKRIRRLKFWS-------LDRLLVDKYR---FSETDAREF-AEFLVPLLDFTPEKRPTA 288
           D K I + +F++        ++ L   ++    SETD R F  EF   ++  TP  +  +
Sbjct: 259 DAKEIMQHRFFAGIVWQHVYEKKLSPPFKPQVTSETDTRYFDEEFTAQMITITPPDQDDS 318
Query: 289 QQCL 292
            +C+
Sbjct: 319 MECV 322

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 144 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 204 GIMAIEMIEGE 214

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L  +D R K+ DFG   + +K   +    + T  + APEVI R+ Y+  VD+WS 
Sbjct: 168 KSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSL 227
Query: 182 ACTAFELATGD 192
                E+  G+
Sbjct: 228 GIMVIEMVDGE 238

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 144 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 203
Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 204 GIMAIEMIEGE 214

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE---IQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +   + ++    + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202
Query: 182 ACTAFELATGD 192
              A E+  G+
Sbjct: 203 GIMAIEMIEGE 213

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L   +   K+ DFG A            T  Y APEV+    Y+ S+D WSF   
Sbjct: 133 KPENILLDKNGHIKITDFGFAKYVPDVTYXLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 192
Query: 185 AFELATG 191
            +E+  G
Sbjct: 193 IYEMLAG 199

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           MV+E++  G+    + K+ R + +E    R + + IL+ +DY HR + ++H DLKPEN+L
Sbjct: 88  MVMEYVSGGELFDYICKHGRVEEME---ARRLFQQILSAVDYCHRHM-VVHRDLKPENVL 143
Query: 59  L 59
           L
Sbjct: 144 L 144

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQTRQYRAPEVILR---AGYSFSVDMW 179
           KP+  L        + DF  A    +  Q      T+ Y APE+      AGYSF+VD W
Sbjct: 142 KPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWW 201
Query: 180 SFACTAFELATG 191
           S   TA+EL  G
Sbjct: 202 SLGVTAYELLRG 213

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           MV+E++  G+    + K+ R + +E    R + + IL+ +DY HR + ++H DLKPEN+L
Sbjct: 88  MVMEYVSGGELFDYICKHGRVEEME---ARRLFQQILSAVDYCHRHM-VVHRDLKPENVL 143
Query: 59  L 59
           L
Sbjct: 144 L 144

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           MV+E++  G+    + K  R   L+  + R + + IL+G+DY HR + ++H DLKPEN+L
Sbjct: 93  MVMEYVSGGELFDYICKNGR---LDEKESRRLFQQILSGVDYCHRHM-VVHRDLKPENVL 148
Query: 59  L 59
           L
Sbjct: 149 L 149

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 49/179 (27%)
Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 139 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E                            L+GK P        ++  Y + +   KR
Sbjct: 199 LCYEF---------------------------LVGKPP-------FEANTYQETY---KR 221
Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           I R++F   D        F    AR   + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 222 ISRVEFTFPD--------FVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITANSS 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-101
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	6e-70
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	7e-21
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-66
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-64
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	4e-63
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-43
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-17
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-43
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	2e-17
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-23
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	4e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	6e-23
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	5e-21
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	3e-20
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	5e-04
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	3e-20
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	7e-20
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	2e-04
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-19
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-07
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-19
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-19
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-08
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	3e-19
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-07
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	7e-19
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	3e-08
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-18
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-18
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-18
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	8e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-18
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-07
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-18
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-17
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	8e-04
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	6e-16
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	8e-16
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	9e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-16
3rp9_A	458	Mitogen-activated protein kinase; structural genom	7e-05
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-15
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	7e-05
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-07
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-15
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-08
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-15
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	1e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	3e-15
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-10
3niz_A	311	Rhodanese family protein; structural genomics, str	4e-15
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-07
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	5e-15
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-07
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	9e-15
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-14
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	6e-07
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-14
3o0g_A	292	Cell division protein kinase 5; kinase activator c	3e-07
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-14
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	9e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-14
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-06
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-14
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	3e-10
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-14
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	3e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-14
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-10
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-13
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-06
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-13
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-07
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	8e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-13
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-13
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	1e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-13
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-13
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-09
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	7e-13
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	8e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	9e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-12
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-12
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	4e-08
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-12
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	7e-12
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-07
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	7e-09
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-11
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-07
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-11
3aln_A	327	Dual specificity mitogen-activated protein kinase;	6e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-11
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-09
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-05
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-11
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	2e-11
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	5e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-11
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	1e-07
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	3e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-10
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-10
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-10
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-10
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-07
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-10
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-10
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-10
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-08
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	7e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	8e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-10
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-09
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	8e-10
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-09
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-07
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-07
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-09
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-09
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	6e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	3e-04
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	4e-09
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-08
3bhy_A	283	Death-associated protein kinase 3; death associate	6e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	6e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	6e-09
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-07
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	6e-09
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	7e-09
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-06
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-05
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	7e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-04
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-08
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-08
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	6e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-08
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-08
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	4e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-04
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-08
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-08
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	4e-08
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-08
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	7e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-04
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-08
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	6e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	7e-08
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	4e-05
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	8e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	9e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-04
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-08
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	5e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	6e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	9e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	8e-07
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-07
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	7e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	8e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	6e-05
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-04
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	3e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-05
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-07
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-06
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-07
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	6e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-07
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	7e-07
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-07
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-07
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	7e-07
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-05
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-04
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-06
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	7e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	2e-06
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	5e-07
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	6e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-07
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	6e-07
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	6e-07
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-05
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	8e-07
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	9e-07
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	9e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	9e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	1e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-06
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	5e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-06
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-06
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-06
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	7e-06
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	6e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-06
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	9e-06
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-06
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-05
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	1e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	3e-06
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-05
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	3e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	9e-06
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	3e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	1e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-06
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	8e-05
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	6e-06
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	6e-06
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	6e-06
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	8e-06
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	8e-06
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	5e-05
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	8e-06
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	8e-05
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-06
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-04
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	8e-06
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	9e-06
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	9e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-04
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	2e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	3e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-05
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	5e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	8e-05
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-05
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-04
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-04
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-04
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-04

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  301 bits (772), Expect = e-101
 Identities = 126/298 (42%), Positives = 175/298 (58%), Gaps = 23/298 (7%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG  LL+ I  S Y+GL L  V++I + +L GLDYLH +  IIHTD+KPENILL 
Sbjct: 122 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS 181

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
                                E  I   +              +  AV+       +   
Sbjct: 182 V-------------------NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFL- 221

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                P    +   ++ K+ D GNAC  +K F E+IQTRQYR+ EV++ +GY+   D+WS
Sbjct: 222 ---VNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWS 278

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
            AC AFELATGD LF P SG+ +  DEDH+AL++EL+GK+PRK+ + G  SK++F + GD
Sbjct: 279 TACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGD 338

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           LK I +LK W L  +LV+KY +S+ +A  F +FL+P+L+  PEKR TA +CL+HPWL+
Sbjct: 339 LKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLN 396

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  221 bits (564), Expect = 6e-70
 Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 6/195 (3%)

Query: 125 KPERCLDGIDMRC------KVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  L  I          K+ D GNAC  ++ +   IQTR+YR+PEV+L A +    D+
Sbjct: 159 KPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 218

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS AC  FEL TGD LF P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  
Sbjct: 219 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 278

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           G L+ I +LKFW L+ +L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL 
Sbjct: 279 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 338

Query: 299 LRNSTRDETKNKSNV 313
                 +       +
Sbjct: 339 DTLGMEEIRVPDREL 353

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 90.9 bits (226), Expect = 7e-21
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG++LL LIK   ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+ 
Sbjct: 107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 166

Query: 61  STIDPSKDP 69
               P    
Sbjct: 167 IVDSPENLI 175

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  211 bits (539), Expect = 3e-66
 Identities = 81/301 (26%), Positives = 119/301 (39%), Gaps = 58/301 (19%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           ++ E LG SL  +I  + Y G  +  ++  C  IL  L+YL  ++ + HTDLKPENILL 
Sbjct: 113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR-KMSLTHTDLKPENILLD 171

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
                               P    +  +   +T  +K    R K               
Sbjct: 172 D-------------------PYFEKSLITVRRVTDGKKIQIYRTKST------------- 199

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                            K++DFG A   +      I TRQYRAPEVIL  G+  S DMWS
Sbjct: 200 ---------------GIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWS 244

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGAQSKDYFDRHG 239
           F C   EL TG +LF            +HLA+M  +I  +P+  +      +   +    
Sbjct: 245 FGCVLAELYTGSLLFRTHE------HMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKD 298

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDA---REFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           +LK        S++ +   K             F +FL  +L   P  RP+  + L+H +
Sbjct: 299 ELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKF 358

Query: 297 L 297
           L
Sbjct: 359 L 359

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  205 bits (524), Expect = 3e-64
 Identities = 76/307 (24%), Positives = 120/307 (39%), Gaps = 74/307 (24%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E LG S    IK + +    L+ +R++   I   +++LH    + HTDLKPENIL V
Sbjct: 94  IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH-SNKLTHTDLKPENILFV 152

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
                                         S  T       +R +R + N  I       
Sbjct: 153 Q-----------------------------SDYTEAYNPKIKRDERTLINPDI------- 176

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                            KVVDFG+A   ++  +  + TR YRAPEVIL  G+S   D+WS
Sbjct: 177 -----------------KVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWS 219

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   E   G  +F           E HLA+M  ++G +P+ +     + K +     D
Sbjct: 220 IGCILIEYYLGFTVF-----PTHDSKE-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLD 273

Query: 241 L--------KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL 292
                       R  K   L   ++ +    + +     + +  +L++ P KR T ++ L
Sbjct: 274 WDEHSSAGRYVSRACK--PLKEFMLSQ----DVEHERLFDLIQKMLEYDPAKRITLREAL 327

Query: 293 QHPWLSL 299
           +HP+  L
Sbjct: 328 KHPFFDL 334

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  203 bits (518), Expect = 4e-63
 Identities = 73/301 (24%), Positives = 117/301 (38%), Gaps = 64/301 (21%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +  E LG +    +K + ++   L  VR +   +   L +LH E  + HTDLKPENIL V
Sbjct: 99  IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH-ENQLTHTDLKPENILFV 157

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGG 120
           +                             S    +  + K   +++V N SI       
Sbjct: 158 N-----------------------------SEFETLYNEHKSCEEKSVKNTSI------- 181

Query: 121 IELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
                            +V DFG+A   ++     + TR YR PEVIL  G++   D+WS
Sbjct: 182 -----------------RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWS 224

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG- 239
             C  FE   G  LF     Q     E HL +M +++G +P  + I   + + YF + G 
Sbjct: 225 IGCILFEYYRGFTLF-----QTHENRE-HLVMMEKILGPIPSHM-IHRTRKQKYFYKGGL 277

Query: 240 --DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             D             + L         +  +  + +  +L+F P +R T  + L HP+ 
Sbjct: 278 VWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFF 337

Query: 298 S 298
           +
Sbjct: 338 A 338

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  153 bits (388), Expect = 2e-43
 Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 30/212 (14%)

Query: 125 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L         KV+DFG++C  +++    IQ+R YRAPEVIL A Y   +DMWS  
Sbjct: 227 KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLG 286

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   EL TG  L       G  E  D LA M+EL+G   +K+     ++K++    G  +
Sbjct: 287 CILAELLTGYPLL-----PGEDE-GDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPR 340

Query: 243 -------------------RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPE 283
                              R  +L+     R   +       D   F +FL   L++ P 
Sbjct: 341 YCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGN--ALKGCDDPLFLDFLKQCLEWDPA 398

Query: 284 KRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
            R T  Q L+HPWL  R   +  T  K++V++
Sbjct: 399 VRMTPGQALRHPWLR-RRLPKPPTGEKTSVKR 429

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 81.3 bits (201), Expect = 3e-17
 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           M  E L  +L  LIK ++++G  L  VR+    IL  LD LH+   IIH DLKPENILL 
Sbjct: 176 MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK-NRIIHCDLKPENILLK 234

Query: 61  STIDPSKDPIR 71
                 +  I+
Sbjct: 235 ---QQGRSGIK 242

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  151 bits (384), Expect = 4e-43
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 30/200 (15%)

Query: 125 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KPE  L  +      K+VDFG++C+  ++  + IQ+R YR+PEV+L   Y  ++DMWS  
Sbjct: 186 KPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLG 245

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL- 241
           C   E+ TG+ LF      G  E  D +  ++E++G  P  I     +++ +F++  D  
Sbjct: 246 CILVEMHTGEPLF-----SGANE-VDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGT 299

Query: 242 ----------KRIRRLKFWSLDRLLVDKYRFS-----------ETDAREFAEFLVPLLDF 280
                     +  +      L  +L  +                 D  +F + ++ +LD+
Sbjct: 300 WNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDY 359

Query: 281 TPEKRPTAQQCLQHPWLSLR 300
            P+ R      LQH +    
Sbjct: 360 DPKTRIQPYYALQHSFFKKT 379

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILL 59
           +V E L  +L  L++ + ++G+ LN  R+  + + T L +L   EL IIH DLKPENILL
Sbjct: 133 LVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILL 192

Query: 60  VSTIDPSKDPIR 71
               +P +  I+
Sbjct: 193 C---NPKRSAIK 201

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 99.1 bits (247), Expect = 2e-23
 Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 16/188 (8%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 191 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 250

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 240
           C   E+    +LF  +         D    ++E +G  P    +   Q    +Y +    
Sbjct: 251 CIMGEMVRHKILFPGRDYI------DQWNKVIEQLGT-PCPEFMKKLQPTVRNYVEN--- 300

Query: 241 LKRIRRLKFWSL--DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             +   L F  L  D L       ++  A +  + L  +L   P KR +    LQHP+++
Sbjct: 301 RPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 360

Query: 299 LRNSTRDE 306
           +     + 
Sbjct: 361 VWYDPAEV 368

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E +  +L ++I+      L+  ++  +   +L G+ +LH   GIIH DLKP NI++
Sbjct: 144 LVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLH-SAGIIHRDLKPSNIVV 197

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 97.1 bits (242), Expect = 6e-23
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 16/188 (8%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA--EEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A  A   F     + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 154 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 213

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 240
           C   E+  G +LF            D    ++E +G  P    +   Q     Y +    
Sbjct: 214 CIMGEMIKGGVLFPGTDHI------DQWNKVIEQLGT-PCPEFMKKLQPTVRTYVEN--- 263

Query: 241 LKRIRRLKFWSL--DRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             +     F  L  D L       ++  A +  + L  +L     KR +  + LQHP+++
Sbjct: 264 RPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 323

Query: 299 LRNSTRDE 306
           +     + 
Sbjct: 324 VWYDPSEA 331

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E +  +L ++I+      L+  ++  +   +L G+ +LH   GIIH DLKP NI++
Sbjct: 107 IVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVV 160

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 90.1 bits (224), Expect = 5e-21
 Identities = 51/301 (16%), Positives = 85/301 (28%), Gaps = 109/301 (36%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLEL--NKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           +  E+  G SL   I  +          +++++   +  GL Y+H  + ++H D+KP NI
Sbjct: 88  IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH-SMSLVHMDIKPSNI 146

Query: 58  LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRAS 117
            +                          N  S           K   K            
Sbjct: 147 FI--------------------SRTSIPNAASEEGDEDDWASNKVMFKIG---------- 176

Query: 118 MGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVIL-RAGYSFSV 176
                                  D G+  R +    EE    ++ A EV+     +    
Sbjct: 177 -----------------------DLGHVTRISSPQVEE-GDSRFLANEVLQENYTHLPKA 212

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+++ A T    A  + L                       G    +I            
Sbjct: 213 DIFALALTVVCAAGAEPLPRN--------------------GDQWHEI------------ 240

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           R G L RI +                S+    EF E L  ++   PE+RP+A   ++H  
Sbjct: 241 RQGRLPRIPQ--------------VLSQ----EFTELLKVMIHPDPERRPSAMALVKHSV 282

Query: 297 L 297
           L
Sbjct: 283 L 283

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 183
           KP       D   K++DFG A  A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 153 KPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGC 212

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              E+ TG  LF  K         D L  ++++ G    +    +    +K Y      L
Sbjct: 213 IMAEMLTGKTLFKGKDYL------DQLTQILKVTGVPGTEFVQKLNDKAAKSYIQS---L 263

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
            +  R  F  L       +  +   A +    L  +L+   +KR TA Q L HP+  
Sbjct: 264 PQTPRKDFTQL-------FPRASPQAADL---LEKMLELDVDKRLTAAQALTHPFFE 310

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+ F+   L +++           K++ +   +L GL Y+H   G++H DLKP N+ +
Sbjct: 106 LVMPFMQTDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPGNLAV 159

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 183
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 155 KPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC 214

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              E+ TG  LF            D L  +M++ G  P +    +   ++K+Y      L
Sbjct: 215 IMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKG---L 265

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             + +  F S+          +   A      L  +L    E+R TA + L HP+  
Sbjct: 266 PELEKKDFASI-------LTNASPLAVNL---LEKMLVLDAEQRVTAGEALAHPYFE 312

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+ F+G  L +L+K+ +   L  ++++ +   +L GL Y+H   GIIH DLKP N+ +
Sbjct: 107 LVMPFMGTDLGKLMKHEK---LGEDRIQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAV 161

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 88.2 bits (219), Expect = 7e-20
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 22/177 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFAC 183
           KP       D   K++DFG A     +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 159 KPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 218

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHGDL 241
              EL TG  LF            D L L++ L+G    ++   I    +++Y      L
Sbjct: 219 IMAELLTGRTLFPGTDHI------DQLKLILRLVGTPGAELLKKISSESARNYIQS---L 269

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
            ++ ++ F ++         F   +     + L  +L    +KR TA Q L H + +
Sbjct: 270 TQMPKMNFANV---------FIGANP-LAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V   +G  L  ++   + + L  + V+ +   IL GL Y+H    IIH DLKP N+ +
Sbjct: 111 LVTHLMGADLNNIV---KCQKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAV 165

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 39/182 (21%), Positives = 68/182 (37%), Gaps = 30/182 (16%)

Query: 129 CLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACT 184
            ++  D   K+ DFG+A +    ++     I +R YRAPE+I     Y+ +VD+WS  C 
Sbjct: 163 LVNEADGTLKLCDFGSA-KKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCI 221

Query: 185 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR----KIAIGGAQSKDYFDRHGD 240
             E+  G+ +F   +          L  ++ ++G   R    K+         Y  +   
Sbjct: 222 FAEMMLGEPIFRGDNSA------GQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIP 275

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS-L 299
              +         +   D               L  LL + PE+R    + L HP+   L
Sbjct: 276 WSNVFSDHSLKDAKEAYD--------------LLSALLQYLPEERMKPYEALCHPYFDEL 321

Query: 300 RN 301
            +
Sbjct: 322 HD 323

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRE-LGIIHTDLKPE 55
           +V+E++ D+L R  +    + +       + K     ++  +  LH   + + H D+KP 
Sbjct: 103 VVMEYVPDTLHRCCRNYYRRQVAPP--PILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPH 160

Query: 56  NILL 59
           N+L+
Sbjct: 161 NVLV 164

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 29/186 (15%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRA-GYSFSVDMWSFA 182
           ++  D+  K+ DFG A   +  ++      E + T+ YR+P ++L    Y+ ++DMW+  
Sbjct: 153 INTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAG 212

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGD 240
           C   E+ TG  LFA         + + + L++E I     +       S    Y      
Sbjct: 213 CIFAEMLTGKTLFAGAH------ELEQMQLILESIPV-VHEEDRQELLSVIPVYIRN--- 262

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
                      L                E  +FL  +L F+P  R TA++ L HP++S+ 
Sbjct: 263 DMTEPHKPLTQL---------LPGISR-EAVDFLEQILTFSPMDRLTAEEALSHPYMSIY 312

Query: 301 NSTRDE 306
           +   DE
Sbjct: 313 SFPMDE 318

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E++   L  +++      L     R     +L GL Y+H    ++H DLKP N+ +
Sbjct: 99  IVQEYMETDLANVLEQGP---LLEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFI 153

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 85.3 bits (212), Expect = 3e-19
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 125 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVD 177
           KPE  L  I      K+ DFG A R     +  + +E+ TR YR+PE+++    Y   VD
Sbjct: 129 KPENIL--ITKHSVIKLCDFGFA-RLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVD 185

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +W+  C   EL +G  L+  KS      D D L L+ + +G +  +     + ++ +   
Sbjct: 186 VWAIGCVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPRHQQVFSTNQYF--- 236

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                   ++        L  K+      A      L   L   P +R T +Q L HP+ 
Sbjct: 237 -----SGVKIPDPEDMEPLELKFPNISYPALGL---LKGCLHMDPTERLTCEQLLHHPYF 288

Query: 298 S 298
            
Sbjct: 289 E 289

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E+   ++L  +     +G+  + V+ I    L  +++ H+    IH D+KPENIL+
Sbjct: 79  LVFEYCDHTVLHELD-RYQRGVPEHLVKSITWQTLQAVNFCHKH-NCIHRDVKPENILI 135

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 86.3 bits (214), Expect = 3e-19
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 23/188 (12%)

Query: 129 CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTA 185
            ++  D   K+ DFG+A     ++     I +R YRAPE++L A  Y+ S+D+WS  C  
Sbjct: 173 LVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVF 232

Query: 186 FELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 245
            EL  G  LF+ ++        D L  +++++G  P K  +       Y +       ++
Sbjct: 233 GELILGKPLFSGETSI------DQLVRIIQIMGT-PTKEQMIRMNP-HYTEVR--FPTLK 282

Query: 246 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS-LRNSTR 304
              +  +           E       + L  +L + P+ R    + + HP+   LRNS  
Sbjct: 283 AKDWRKI---------LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRNSYE 333

Query: 305 DETKNKSN 312
            E KN SN
Sbjct: 334 SEVKNNSN 341

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 56
           +++E++ D+L +++K     G  +     +       +   + ++H  LGI H D+KP+N
Sbjct: 115 VIMEYVPDTLHKVLKSFIRSGRSIPM--NLISIYIYQLFRAVGFIH-SLGICHRDIKPQN 171

Query: 57  ILL 59
           +L+
Sbjct: 172 LLV 174

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 27/179 (15%)

Query: 125 KPERCLDGIDMRC--KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRAG-YSFSVD 177
           KPE  L  +      K+ DFG A R      + + +E+ TR YRAPE+++    Y  +VD
Sbjct: 151 KPENIL--VSQSGVVKLCDFGFA-RTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVD 207

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +W+  C   E+  G+ LF   S      D D L  +M  +G +  +      ++  +   
Sbjct: 208 VWAIGCLVTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPRHQELFNKNPVF--- 258

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                   RL        L  +Y        +        L   P+KRP   + L H +
Sbjct: 259 -----AGVRLPEIKEREPLERRYPKLSEVVIDL---AKKCLHIDPDKRPFCAELLHHDF 309

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF+  ++L  ++     GL+   V++    I+ G+ + H    IIH D+KPENIL+
Sbjct: 101 LVFEFVDHTILDDLE-LFPNGLDYQVVQKYLFQIINGIGFCHSH-NIIHRDIKPENILV 157

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 23/188 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSF 181
            P   L   +    + DF  A    A+      +  R YRAPE+++   G++  VDMWS 
Sbjct: 161 HPGNILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSA 220

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYFDRHG 239
            C   E+     LF   +        + L  ++E++G    +         ++DY     
Sbjct: 221 GCVMAEMFNRKALFRGSTFY------NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNS- 273

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
            L  +    + ++          ++  A +    +  +L+F P++R + +Q L+HP+   
Sbjct: 274 -LSNVPARAWTAV-------VPTADPVALDL---IAKMLEFNPQRRISTEQALRHPYFES 322

Query: 300 RNSTRDET 307
                D T
Sbjct: 323 LFDPLDLT 330

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E +   L ++I   +   +    ++    +IL GL  LH E G++H DL P NILL
Sbjct: 111 LVTELMRTDLAQVIH-DQRIVISPQHIQYFMYHILLGLHVLH-EAGVVHRDLHPGNILL 167

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 28/183 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA------EEIQTRQYRAPEVILRA-GYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L + GY+ S+D
Sbjct: 155 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 214

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI--AIGGAQSKDYF 235
           +WS  C   E+ +   +F  K         D L  ++ ++G   ++    I   ++++Y 
Sbjct: 215 IWSVGCILAEMLSNRPIFPGKHYL------DQLNHILGILGSPSQEDLNCIINLKARNYL 268

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                L    ++ +  L       +  +++ A +    L  +L F P KR   +Q L HP
Sbjct: 269 LS---LPHKNKVPWNRL-------FPNADSKALDL---LDKMLTFNPHKRIEVEQALAHP 315

Query: 296 WLS 298
           +L 
Sbjct: 316 YLE 318

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V + +   L +L+K      L  + +      IL GL Y+H    ++H DLKP N+LL
Sbjct: 107 IVQDLMETDLYKLLKTQH---LSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNLLL 161

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 48/194 (24%)

Query: 125 KPER-CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 180
           KP+   LD      K++DFG+A    A +     I +R YRAPE+I  A  Y+ ++D+WS
Sbjct: 168 KPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWS 227

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   EL  G  LF  +SG       D L  +++++G   R+                 
Sbjct: 228 TGCVMAELMQGQPLFPGESG------IDQLVEIIKVLGTPSRE----------------Q 265

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP------------LLDFTPEKRPTA 288
           +K +               ++F +     F++   P            LL++TP  R TA
Sbjct: 266 IKTMNPNYME---------HKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTA 316

Query: 289 QQCLQHPWL-SLRN 301
            + L HP+   LR 
Sbjct: 317 IEALCHPFFDELRT 330

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 2   VLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPENI 57
           VLE++ +++ R  ++       +     + K     +L  L Y+H  +GI H D+KP+N+
Sbjct: 116 VLEYVPETVYRASRHYAKLKQTMPM--LLIKLYMYQLLRSLAYIHS-IGICHRDIKPQNL 172

Query: 58  LLVSTIDPSKD 68
           L    +DP   
Sbjct: 173 L----LDPPSG 179

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 84.0 bits (208), Expect = 3e-18
 Identities = 46/196 (23%), Positives = 76/196 (38%), Gaps = 52/196 (26%)

Query: 125 KPERCLDGIDMRC---KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDM 178
           KP+  L  +D      K+ DFG+A      +     I +R YRAPE+I  A  Y+ S+D+
Sbjct: 183 KPQNLL--LDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 240

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS  C   EL  G  +F   SG       D L  +++++G   R+               
Sbjct: 241 WSAGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTRE--------------- 279

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP------------LLDFTPEKRP 286
             ++ +               ++F +  A  + +   P            LL++TP  R 
Sbjct: 280 -QIREMNPNYTE---------FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARL 329

Query: 287 TAQQCLQHPWLS-LRN 301
           T  +   H +   LR+
Sbjct: 330 TPLEACAHSFFDELRD 345

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 2   VLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPENI 57
           VL+++ +++ R+ ++       L       K     +   L Y+H   GI H D+KP+N+
Sbjct: 131 VLDYVPETVYRVARHYSRAKQTLP--VIYVKLYMYQLFRSLAYIHS-FGICHRDIKPQNL 187

Query: 58  LL 59
           LL
Sbjct: 188 LL 189

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 12/159 (7%)

Query: 154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL 212
           + + TR YRAPE++L +  Y+  +DMWS  C   E+  G  +F   S        + L  
Sbjct: 189 DYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM------NQLER 242

Query: 213 MMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREF 270
           ++ +I     +   +I    +K   +   +   IR+     +     +        A   
Sbjct: 243 IIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCN 302

Query: 271 AE---FLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
            E    L  LL F P KR +A   L+HP++S+ ++  +E
Sbjct: 303 EEALDLLDKLLQFNPNKRISANDALKHPFVSIFHNPNEE 341

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 36/191 (18%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA-------------EEIQTRQYRAPEVILRA- 170
           KP   L   +   KV DFG A   ++  A             E + TR YRAPEV+L + 
Sbjct: 139 KPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSA 198

Query: 171 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI---AIG 227
            YS ++D+WS  C   EL     +F  +  +        L L+  +IG          I 
Sbjct: 199 KYSRAMDVWSCGCILAELFLRRPIFPGRDYR------HQLLLIFGIIGTPHSDNDLRCIE 252

Query: 228 GAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT 287
             ++++Y      L          +       +        +    L  +L F P KR T
Sbjct: 253 SPRAREYIKS---LPMYPAAPLEKM-------FPRVNPKGIDL---LQRMLVFDPAKRIT 299

Query: 288 AQQCLQHPWLS 298
           A++ L+HP+L 
Sbjct: 300 AKEALEHPYLQ 310

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 56
           ++ E +   L R+I         L+      +Y     L  +  LH    +IH DLKP N
Sbjct: 91  IIQELMQTDLHRVIS-----TQMLSDDH--IQYFIYQTLRAVKVLH-GSNVIHRDLKPSN 142

Query: 57  ILL 59
           +L+
Sbjct: 143 LLI 145

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 76.1 bits (188), Expect = 6e-16
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 35/167 (20%)

Query: 138 KVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           K+ DFG A R           + T  YRAPEV+L++ Y+  VDMWS  C   E+     L
Sbjct: 160 KLADFGLA-RIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 218

Query: 195 FAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 249
           F   S      + D L  + +LIG       PR +++              ++ +     
Sbjct: 219 FCGNS------EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPR--GPRPVQSV----V 266

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             ++                    L+ +L F P KR +A + LQH +
Sbjct: 267 PEMEESGAQ--------------LLLEMLTFNPHKRISAFRALQHSY 299

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E +   L   +  +   GL    ++++ +  L GLD+LH    I+H DLKPENIL+
Sbjct: 96  LVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILV 153

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 46/177 (25%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 192
           K+ DFG A RA     +QF  EI T  YR PE++L +  YS SVD+WS AC   E+    
Sbjct: 177 KIGDFGLA-RAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDL 241
            LF   S      + D L  + E++G            +P          K  F +    
Sbjct: 236 PLFPGDS------EIDQLFKIFEVLGLPDDTTWPGVTALP--------DWKQSFPKF-RG 280

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           K ++R+    LD   +D               L  +L+  P KR +A+  L+HP+ S
Sbjct: 281 KTLKRVLGALLDDEGLD--------------LLTAMLEMDPVKRISAKNALEHPYFS 323

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ E+  + L + +   +   + +  ++     ++ G+++ H     +H DLKP+N+LL
Sbjct: 110 LIFEYAENDLKKYM--DKNPDVSMRVIKSFLYQLINGVNFCHSR-RCLHRDLKPQNLLL 165

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 76.8 bits (189), Expect = 8e-16
 Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 41/210 (19%)

Query: 117 SMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRA-GYSFS 175
           ++   E    +  +   +    +V F +     +Q    + TR YRAPE+IL    Y+ +
Sbjct: 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEA 264

Query: 176 VDMWSFACTAFELATGDMLFAPKSGQG-------------------------FCEDEDHL 210
           +D+WS  C   EL                                          + D L
Sbjct: 265 IDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQL 324

Query: 211 ALMMELIGKMPRKI--AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR 268
            ++  ++G    +   A+    +K Y         IR          L +++  S  DA 
Sbjct: 325 NVIFNILGTPSEEDIEALEKEDAKRY---------IRIFPKRE-GTDLAERFPASSADAI 374

Query: 269 EFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                L  +L F P KR T  +CL HP+  
Sbjct: 375 HL---LKRMLVFNPNKRITINECLAHPFFK 401

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 11/63 (17%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 56
           +VLE       +L +      + L +     K     +L G+ Y+H   GI+H DLKP N
Sbjct: 134 VVLEIADSDFKKLFR----TPVYLTE--LHIKTLLYNLLVGVKYVH-SAGILHRDLKPAN 186

Query: 57  ILL 59
            L+
Sbjct: 187 CLV 189

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 40/170 (23%), Positives = 57/170 (33%), Gaps = 38/170 (22%)

Query: 154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDM-----------LF------ 195
             + TR YRAPE+IL    Y+ S+D+WS  C   EL                LF      
Sbjct: 210 SHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCF 269

Query: 196 --APKSGQGFCEDEDH---LALMMELIGKMPRK--IAIGGAQSKDYFDRHGDLKRIRRLK 248
             +P        ++ +   L ++  +IG         I   +   Y          + + 
Sbjct: 270 PLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKL---FPHRKPIN 326

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                     KY     D       L  +L F P KR T  Q L HP+L 
Sbjct: 327 L-------KQKYPSISDDGINL---LESMLKFNPNKRITIDQALDHPYLK 366

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 11/63 (17%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKY----ILTGLDYLHRELGIIHTDLKPEN 56
           +VLE     L +L K      + L +     K     +L G +++H E GIIH DLKP N
Sbjct: 107 IVLEIADSDLKKLFK----TPIFLTEEH--IKTILYNLLLGENFIH-ESGIIHRDLKPAN 159

Query: 57  ILL 59
            LL
Sbjct: 160 CLL 162

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 16/175 (9%), Positives = 39/175 (22%), Gaps = 41/175 (23%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFA 182
            P+      D R  + D     +   +         Y   E +    A ++ +++ W   
Sbjct: 221 TPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLG 280

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
            + + +    + F   +                                       G  K
Sbjct: 281 LSIYRVWCLFLPFGLVTP-----------------------------------GIKGSWK 305

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           R       +            +         +   L+F   +R    + ++ P  
Sbjct: 306 RPSLRVPGTDSLAFGSCTPLPD----FVKTLIGRFLNFDRRRRLLPLEAMETPEF 356

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 7/64 (10%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 1   MVLEFLGDSLLRLIKYSRYKG-----LELNKVREICKYILTGLDYLHRELGIIHTDLKPE 55
           +++      L  L     +         +  +  +   ++     L    G++H    P+
Sbjct: 165 LLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQS-KGLVHGHFTPD 223

Query: 56  NILL 59
           N+ +
Sbjct: 224 NLFI 227

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 44/175 (25%), Positives = 63/175 (36%), Gaps = 47/175 (26%)

Query: 138 KVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDML 194
           K+ DFG A R           + T  YRAPEV+L++ Y+  VD+WS  C   E+     L
Sbjct: 160 KLADFGLA-RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL 218

Query: 195 FAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDLKR 243
           F   S      D D L  ++++IG            +P          +  F       +
Sbjct: 219 FRGSS------DVDQLGKILDVIGLPGEEDWPRDVALP----------RQAFHSKS--AQ 260

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                   +D L  D               L+  L F P KR +A   L HP+  
Sbjct: 261 PIEKFVTDIDELGKD--------------LLLKCLTFNPAKRISAYSALSHPYFQ 301

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E +   L   +      G+    ++++   +L GLD+LH    ++H DLKP+NIL+
Sbjct: 96  LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILV 153

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 32/178 (17%), Positives = 74/178 (41%), Gaps = 16/178 (8%)

Query: 130 LDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAF 186
           +D    + +++D+G A      +++   + +R ++ PE+++    Y +S+DMWS  C   
Sbjct: 163 IDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLA 222

Query: 187 ELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 245
            +    +  F          + D L  + +++G       I     +     +  L R  
Sbjct: 223 SMIFRKEPFFHGHD------NYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHS 276

Query: 246 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-SLRNS 302
           R ++     +  +       +A +F   L  LL +  + R TA++ ++HP+  ++   
Sbjct: 277 RKRWERF--VHSENQHLVSPEALDF---LDKLLRYDHQSRLTAREAMEHPYFYTVVKD 329

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 2   VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           V E + ++  + +    Y+ L    +R     IL  LDY H   GI+H D+KP N+++
Sbjct: 111 VFEHVNNTDFKQL----YQTLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMI 163

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 41/190 (21%), Positives = 60/190 (31%), Gaps = 35/190 (18%)

Query: 125 KPE-----RCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRA------- 170
           KP         DG     K+ DFG       ++QF     T +Y  P++  RA       
Sbjct: 139 KPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 171 -GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 229
             Y  +VD+WS   T +  ATG + F P  G        +  +M ++I   P      GA
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEG-----PRRNKEVMYKIITGKPS-----GA 247

Query: 230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 289
            S      +G +     +               S          L  +L+   EK     
Sbjct: 248 ISGVQKAENGPIDWSGDMPVSC---------SLSRGLQVLLTPVLANILEADQEKCWGFD 298

Query: 290 QCLQHPWLSL 299
           Q        L
Sbjct: 299 QFFAETSDIL 308

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +++EF   G     L + S   GL  ++   + + ++ G+++L  E GI+H ++KP NI+
Sbjct: 86  LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR-ENGIVHRNIKPGNIM 144

Query: 59  LVSTIDPS 66
            V   D  
Sbjct: 145 RVIGEDGQ 152

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   D   K+ DFG A RA     + +  E+ T  YRAP+V++ +  YS SVD+W
Sbjct: 146 KPQNLLINSDGALKLADFGLA-RAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIW 204

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 228
           S  C   E+ TG  LF   +      D+D L  +  ++G           ++P       
Sbjct: 205 SIGCIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPREWPQVQELP------- 251

Query: 229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 288
                +        + R  + +                     + L  +L F P KR +A
Sbjct: 252 ----LW--------KQRTFQVFEKKPW---SSIIPGFCQEGI-DLLSNMLCFDPNKRISA 295

Query: 289 QQCLQHPWLS 298
           +  + HP+  
Sbjct: 296 RDAMNHPYFK 305

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF+   L +++      GL+ ++++     +L G+ + H+   I+H DLKP+N+L+
Sbjct: 96  LVFEFMEKDLKKVLD-ENKTGLQDSQIKIYLYQLLRGVAHCHQH-RILHRDLKPQNLLI 152

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 73.3 bits (181), Expect = 5e-15
 Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 47/190 (24%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMW 179
           KP+  L   +   K+ DFG A RA     +++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 127 KPQNLLINREGELKIADFGLA-RAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGG 228
           S  C   E+  G  LF   S      + D L  +  ++G           ++P       
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELP------- 232

Query: 229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 288
            +    F  +             LD   +D               L  +L   P +R TA
Sbjct: 233 -KYDPNFTVY--EPLPWESFLKGLDESGID--------------LLSKMLKLDPNQRITA 275

Query: 289 QQCLQHPWLS 298
           +Q L+H +  
Sbjct: 276 KQALEHAYFK 285

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E L   L +L+      GLE    +     +L G+ Y H    ++H DLKP+N+L+
Sbjct: 77  LVFEHLDQDLKKLLD-VCEGGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLI 133

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EFL   L + +  S   G+ L  ++     +L GL + H    ++H DLKP+N+L+
Sbjct: 79  LVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLI 136

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 42/177 (23%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 192
           K+ DFG A RA       F+ E+ T  YRAP+V++ +  YS S+D+WS  C   E+ TG 
Sbjct: 148 KLGDFGLA-RAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFDRHGDL 241
            LF   +      DE+ L L+ +++G           K+P+       +           
Sbjct: 207 PLFPGTN------DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLR----- 255

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           + ++      LD  L+D              FL  LL   P+ R +A+Q L HPW +
Sbjct: 256 QVLQPHTKEPLDGNLMD--------------FLHGLLQLNPDMRLSAKQALHHPWFA 298

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 1   MVLEFLGDSLLRLIK----YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V EF+ + L + +      +  +GLELN V+     +L GL + H    I+H DLKP+N
Sbjct: 80  LVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN-KILHRDLKPQN 138

Query: 57  ILL 59
           +L+
Sbjct: 139 LLI 141

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 26/167 (15%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELAT-G 191
           K+ +FG A RA     + ++ E+ T  YR P+V+  A  YS S+DMWS  C   ELA  G
Sbjct: 141 KLANFGLA-RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG 199

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
             LF           +D L  +  L+G    +      +  DY          +    + 
Sbjct: 200 RPLFPGND------VDDQLKRIFRLLGTPTEEQWPSMTKLPDY----------KPYPMYP 243

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
               LV+         R+  + L   L   P +R +A++ LQHP+ S
Sbjct: 244 ATTSLVNVVPKLNATGRDLLQNL---LKCNPVQRISAEEALQHPYFS 287

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF    L +    S    L+   V+     +L GL + H    ++H DLKP+N+L+
Sbjct: 78  LVFEFCDQDLKKYFD-SCNGDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLI 134

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 34/171 (19%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 192
           K+ DFG A RA     K +  E+ T  YR P+++L +  YS  +DMW   C  +E+ATG 
Sbjct: 140 KLADFGLA-RAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
            LF   +       E+ L  +  ++G       P     G   ++++        +    
Sbjct: 199 PLFPGST------VEEQLHFIFRILGTPTEETWP-----GILSNEEF--------KTYNY 239

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             +  + LL       ++D  +       LL F    R +A+  ++HP+  
Sbjct: 240 PKYRAEALL-SHAPRLDSDGADLLTK---LLQFEGRNRISAEDAMKHPFFL 286

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E+L   L + +       + ++ V+     +L GL Y HR+  ++H DLKP+N+L+
Sbjct: 77  LVFEYLDKDLKQYLD-DCGNIINMHNVKLFLFQLLRGLAYCHRQ-KVLHRDLKPQNLLI 133

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 36/182 (19%)

Query: 138 KVVDFGNA------CRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELAT 190
           K+ D G A       +        + T  YRAPE++L A  Y+ ++D+W+  C   EL T
Sbjct: 172 KIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT 231

Query: 191 GDMLFAPKS---GQGFCEDEDHLALMMELIG-----------KMPRKIAIGGAQSKDYFD 236
            + +F  +            D L  +  ++G           KMP              +
Sbjct: 232 SEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMP--------------E 277

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
               +K  RR  + +   +   +    + D++ F   L  LL   P KR T++Q +Q P+
Sbjct: 278 HSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF-HLLQKLLTMDPIKRITSEQAMQDPY 336

Query: 297 LS 298
             
Sbjct: 337 FL 338

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 1   MVLEFLGDSLLRLIKYSRYKG-------LELNKVREICKYILTGLDYLHRELGIIHTDLK 53
           ++ ++    L  +IK+ R          L    V+ +   IL G+ YLH    ++H DLK
Sbjct: 97  LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLK 155

Query: 54  PENILLVSTID 64
           P NIL++    
Sbjct: 156 PANILVMGEGP 166

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 34/168 (20%), Positives = 60/168 (35%), Gaps = 17/168 (10%)

Query: 137 CKVVDFGNACRANKQFAEE-IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF 195
            K+ DFG + +     A   + TR Y +PE +    YS   D+WS   +  E+A G    
Sbjct: 171 IKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 230

Query: 196 APKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL 255
            P       + ++   +    +     +            ++ G   R     F  LD +
Sbjct: 231 PP------PDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYI 284

Query: 256 ------LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                  +    FS     EF +F+   L   P +R   +Q + H ++
Sbjct: 285 VNEPPPKLPSGVFSL----EFQDFVNKCLIKNPAERADLKQLMVHAFI 328

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +E + G SL +++K  +   +    + ++   ++ GL YL  +  I+H D+KP NIL+
Sbjct: 108 ICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV 165

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 71.5 bits (175), Expect = 4e-14
 Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 34/184 (18%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQYR--------------APEVILR--AGYSFSVDMW 179
           +  +    +            Q ++                +PEV+ +   GY    D++
Sbjct: 166 KVYLSGLRSNL----SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIY 221

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR------KIAIGGAQSKD 233
           S   TA ELA G     P     F +      L+ +L G +P         A     S  
Sbjct: 222 SVGITACELANGH---VP-----FKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPS 273

Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
               +  L                  + +  T +  F  F+   L   P+ RP+A   L 
Sbjct: 274 RSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN 333

Query: 294 HPWL 297
           H + 
Sbjct: 334 HSFF 337

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           V  F+   S   LI      G+    +  I + +L  LDY+H   G +H  +K  +IL+
Sbjct: 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILI 161

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 70.9 bits (174), Expect = 4e-14
 Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 53/175 (30%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQ--------YRAPEVILRAGYSFSVDMWSFACTAFE 187
           R  + DFG+A         +             + APEV++       VD+WS  C    
Sbjct: 189 RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLH 248

Query: 188 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
           +  G   +                L +  I   P              +           
Sbjct: 249 MLNGCHPWT---------QYFRGPLCL-KIASEP----------PPIREIPPSC------ 282

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
                          +       A+ +   L   P  R +A +  +    +L+  
Sbjct: 283 ---------------AP----LTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            +E L G SL +LIK  +   L  ++        L GL+YLH    I+H D+K +N+LL
Sbjct: 128 FMELLEGGSLGQLIK--QMGCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLL 183

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 43/169 (25%), Positives = 62/169 (36%), Gaps = 36/169 (21%)

Query: 138 KVVDFGNACRA----NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGD 192
           K+ DFG A ++    N+ +  ++ TR YRAPE++  A  Y   VDMW+  C   EL    
Sbjct: 152 KLADFGLA-KSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV 210

Query: 193 MLFAPKSGQGFCEDEDHLALMMELIG-----KMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
                 S      D D L  + E +G     + P           DY             
Sbjct: 211 PFLPGDS------DLDQLTRIFETLGTPTEEQWP-----DMCSLPDY----------VTF 249

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           K +    L    + FS        + +  L  F P  R TA Q L+  +
Sbjct: 250 KSFPGIPL---HHIFSAAGDDLL-DLIQGLFLFNPCARITATQALKMKY 294

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V +F+   L  +IK      L  + ++      L GL+YLH+   I+H DLKP N+LL
Sbjct: 89  LVFDFMETDLEVIIK-DNSLVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLL 145

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 47/198 (23%), Positives = 71/198 (35%), Gaps = 52/198 (26%)

Query: 125 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K+VDFG +      K+  E + T  Y APEV LR  Y    D+W
Sbjct: 163 KPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVW 221

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 238
           S     F L  G   F  ++ Q           ++  +            +   Y FD  
Sbjct: 222 SIGVILFILLAGYPPFGGQTDQE----------ILRKV------------EKGKYTFDS- 258

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                      W            SE  A+   + +  +L F  ++R +AQQ L+HPW+ 
Sbjct: 259 ---------PEWK---------NVSE-GAK---DLIKQMLQFDSQRRISAQQALEHPWIK 296

Query: 299 LRNSTRDETKNKSNVEKV 316
              S ++      ++   
Sbjct: 297 EMCSKKESGIELPSLANA 314

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+E    G+    +I   ++   E      I K +L+G+ YLH +  I+H DLKPEN+L
Sbjct: 113 LVMECYKGGELFDEIIHRMKFN--E-VDAAVIIKQVLSGVTYLH-KHNIVHRDLKPENLL 168

Query: 59  LVSTIDPSK 67
           L S    + 
Sbjct: 169 LESKEKDAL 177

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 70.5 bits (172), Expect = 2e-13
 Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 125 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  +       +  K++D G        +   E + T QY APE++ +  Y+ +VD W
Sbjct: 148 KPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYW 207

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           SF   AFE  TG   F P     F  +   +    ++  K    I +       Y D  G
Sbjct: 208 SFGTLAFECITG---FRP-----FLPNWQPVQWHGKVREKSNEHIVV-------YDDLTG 252

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
            +K    L   +           S   A +   +L  +L +   +R T  Q         
Sbjct: 253 AVKFSSVLPTPN---------HLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQA 303

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           + +E+   GD    L ++    GL+   +R +   I + L YLH E  IIH DLKPENI+
Sbjct: 95  LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH-ENRIIHRDLKPENIV 153

Query: 59  LVS 61
           L  
Sbjct: 154 LQP 156

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 25/169 (14%), Positives = 52/169 (30%), Gaps = 47/169 (27%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFACTAFEL 188
           + G     K+ D G A      FA+ +  T ++ APE+     Y  SVD+++F     E+
Sbjct: 164 ITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY-EEKYDESVDVYAFGMCMLEM 222

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 248
           AT +  ++         +  + A +   +    +  +                       
Sbjct: 223 ATSEYPYS---------ECQNAAQIYRRVTSGVKPASFDKVAIP---------------- 257

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                               E  E +   +    ++R + +  L H + 
Sbjct: 258 --------------------EVKEIIEGCIRQNKDERYSIKDLLNHAFF 286

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENIL 58
           +V E +   +L   +K  R+K +++  +R  C+ IL GL +LH R   IIH DLK +NI 
Sbjct: 106 LVTELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIF 163

Query: 59  L 59
           +
Sbjct: 164 I 164

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 52/175 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ--TRQYRAPEVILRAGYSFSVDMWSFA 182
           KP     G   RCK+ DFG         A E+Q    +Y APE+ L+  Y  + D++S  
Sbjct: 184 KPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPEL-LQGSYGTAADVFSLG 242

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
            T  E+A    +  P  G+                                        +
Sbjct: 243 LTILEVACN--MELPHGGE--------------------------------------GWQ 262

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           ++R+               F+   + E    LV +L+  P+ R TA+  L  P L
Sbjct: 263 QLRQGYL---------PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVL 308

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +  E  G SL +  + +    L   +V    +  L  L +LH   G++H D+KP NI L
Sbjct: 134 LQTELCGPSLQQHCE-AWGASLPEAQVWGYLRDTLLALAHLH-SQGLVHLDVKPANIFL 190

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 49/192 (25%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A      ++  T  Y  PE+I    +   VD+WS   
Sbjct: 136 KPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E   G     P     F E   +                                KR
Sbjct: 196 LCYEFLVG---KPP-----F-EANTYQETY----------------------------KR 218

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           I R+           ++ F +       + +  LL   P +RP  ++ L+HPW++  +S 
Sbjct: 219 ISRV-----------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSK 267

Query: 304 RDETKNKSNVEK 315
               +NK +  K
Sbjct: 268 PSNCQNKESASK 279

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++LE+    ++ R ++  +    +  +       +   L Y H    +IH D+KPEN+LL
Sbjct: 86  LILEYAPLGTVYRELQ--KLSKFDEQRTATYITELANALSYCHS-KRVIHRDIKPENLLL 142

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV+E     L   +K  + K ++  + +   K +L  +  +H+  GI+H+DLKP N L+V
Sbjct: 105 MVMECGNIDLNSWLK--KKKSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV 161

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 62/206 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 168
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 154 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 212

Query: 169 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 228
           ++  S   D+WS  C  + +  G     P     F +  + ++ +  +I           
Sbjct: 213 KSKISPKSDVWSLGCILYYMTYG---KTP-----FQQIINQISKLHAII----------- 253

Query: 229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 288
               ++                        +  F +   ++  + L   L   P++R + 
Sbjct: 254 --DPNH------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 287

Query: 289 QQCLQHPWLSLRNSTRDETKNKSNVE 314
            + L HP++ ++    ++    +  E
Sbjct: 288 PELLAHPYVQIQTHPVNQMAKGTTEE 313

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 54/175 (30%)

Query: 134 DMRCKVVDFGNACRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
             + K+ DFG         +      T +Y +PE I    Y   VD+++      EL   
Sbjct: 158 TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHV 217

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
                                                      F+       +R      
Sbjct: 218 ---------------------------------------CDTAFETSKFFTDLRDGIISD 238

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE 306
                     F     ++    L  LL   PE RP   + L+   +  ++  ++E
Sbjct: 239 ---------IFD----KKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE 280

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +EF    +L + I+  R + L+     E+ + I  G+DY+H    +I+ DLKP NI L
Sbjct: 97  IQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH-SKKLINRDLKPSNIFL 155

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV+E     L   +K  + K ++  + +   K +L  +  +H+  GI+H+DLKP N L+V
Sbjct: 86  MVMECGNIDLNSWLK--KKKSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV 142

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 62/203 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 168
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 135 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS 193

Query: 169 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 228
           ++  S   D+WS  C  + +  G     P     F +  + ++ +  +I           
Sbjct: 194 KSKISPKSDVWSLGCILYYMTYG---KTP-----FQQIINQISKLHAII----------- 234

Query: 229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 288
               ++                        +  F +   ++  + L   L   P++R + 
Sbjct: 235 --DPNH------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 268

Query: 289 QQCLQHPWLSLRNSTRDETKNKS 311
            + L HP++ ++    ++    +
Sbjct: 269 PELLAHPYVQIQTHPVNQMAKGT 291

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 67.3 bits (164), Expect = 8e-13
 Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 64/184 (34%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-----------YS 173
           +P   +        +  F +  R          +R +  PE+  R              +
Sbjct: 233 RPVDIVLDQRGGVFLTGFEHLVRDGA-RVVSSVSRGFEPPELEARRATISYHRDRRTLMT 291

Query: 174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 233
           FS D W+     + +   D+             +D      E I +  + I     +   
Sbjct: 292 FSFDAWALGLVIYWIWCADLPI----------TKDAALGGSEWIFRSCKNIP-QPVR--- 337

Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
                  L  +                                 L +  E R    Q ++
Sbjct: 338 ------AL--LEG------------------------------FLRYPKEDRLLPLQAME 359

Query: 294 HPWL 297
            P  
Sbjct: 360 TPEY 363

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 3   LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           L+  G+ LL     S +K L  +   ++   ++  L  LH   G++HT L+P +I+L
Sbjct: 186 LQTFGEVLLSHS--STHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVL 239

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 67.1 bits (164), Expect = 9e-13
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV+E     L   +K  + K ++  + +   K +L  +  +H+  GI+H+DLKP N L+V
Sbjct: 133 MVMECGNIDLNSWLK--KKKSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV 189

Query: 61  S 61
            
Sbjct: 190 D 190

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 62/203 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVIL----------- 168
           KP   L  +D   K++DFG A +        ++  Q     Y  PE I            
Sbjct: 182 KPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKS 240

Query: 169 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG 228
           ++  S   D+WS  C  + +  G   F              +   +              
Sbjct: 241 KSKISPKSDVWSLGCILYYMTYGKTPF------------QQIINQISK------------ 276

Query: 229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA 288
                       L  I              +  F +   ++  + L   L   P++R + 
Sbjct: 277 ------------LHAIIDPNH---------EIEFPDIPEKDLQDVLKCCLKRDPKQRISI 315

Query: 289 QQCLQHPWLSLRNSTRDETKNKS 311
            + L HP++ ++    ++    +
Sbjct: 316 PELLAHPYVQIQTHPVNQMAKGT 338

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 41/191 (21%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 125 KPE-----RCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRA------- 170
           KP         DG     K+ DFG       ++QF     T +Y  P++  RA       
Sbjct: 139 KPGNIMRVIGEDG-QSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 171 -GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 229
             Y  +VD+WS   T +  ATG + F P  G        +  +M ++I   P      GA
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKIITGKPS-----GA 247

Query: 230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 289
            S      +G +     +               S          L  +L+   EK     
Sbjct: 248 ISGVQKAENGPIDWSGDMPVSC---------SLSRGLQVLLTPVLANILEADQEKCWGFD 298

Query: 290 QCLQHPWLSLR 300
           Q        L 
Sbjct: 299 QFFAETSDILH 309

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.4 bits (149), Expect = 9e-11
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +++EF   G     L + S   GL  ++   + + ++ G+++L  E GI+H ++KP NI+
Sbjct: 86  LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR-ENGIVHRNIKPGNIM 144

Query: 59  LVSTIDPSK 67
            V   D   
Sbjct: 145 RVIGEDGQS 153

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 57/210 (27%)

Query: 125 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L       +  K+VDFG +     + +  + + T  Y APEV L+  Y+   D+W
Sbjct: 173 KPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEV-LKKKYNEKCDVW 231

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 238
           S     + L  G   F  ++ Q           +++ +            +   Y FD  
Sbjct: 232 SCGVIMYILLCGYPPFGGQNDQD----------IIKKV------------EKGKYYFDF- 268

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                      W            S+ +A+   E +  +L +   KR TA++ L   W+ 
Sbjct: 269 ---------NDWK---------NISD-EAK---ELIKLMLTYDYNKRCTAEEALNSRWIK 306

Query: 299 LRNSTRDETKNKSNVEKVD-----VGMSKL 323
              +  +++  K+    +       G  KL
Sbjct: 307 KYANNINKSDQKTLCGALSNMRKFEGSQKL 336

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V EF   G+   ++I   ++   E      I K IL+G+ YLH +  I+H D+KPENIL
Sbjct: 123 LVTEFYEGGELFEQIINRHKFD--E-CDAANIMKQILSGICYLH-KHNIVHRDIKPENIL 178

Query: 59  LVSTIDPSK 67
           L +      
Sbjct: 179 LENKNSLLN 187

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 64.6 bits (158), Expect = 5e-12
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 1   MVLEFLGDSLLRLIK--YSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           + +E +  SL +  K    + + +  + + +I   I+  L++LH +L +IH D+KP N+L
Sbjct: 83  ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVL 142

Query: 59  L 59
           +
Sbjct: 143 I 143

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 51/166 (30%)

Query: 138 KVVDFGNACRANKQFAEE--IQTRQYRAPEVIL----RAGYSFSVDMWSFACTAFELATG 191
           K+ DFG +       A++     + Y APE I     + GYS   D+WS   T  ELA  
Sbjct: 150 KMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA-- 207

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
                                    I + P            Y       ++++++    
Sbjct: 208 -------------------------ILRFP------------YDSWGTPFQQLKQVVEEP 230

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +L  DK  FS     EF +F    L    ++RPT  + +QHP+ 
Sbjct: 231 SPQLPADK--FSA----EFVDFTSQCLKKNSKERPTYPELMQHPFF 270

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 57/210 (27%)

Query: 125 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   +++DFG +    A+K+  ++I T  Y APEV L   Y    D+W
Sbjct: 153 KPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV-LHGTYDEKCDVW 211

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 238
           S     + L +G   F   +             +++ +            +   Y F+  
Sbjct: 212 STGVILYILLSGCPPFNGANEYD----------ILKKV------------EKGKYTFEL- 248

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                      W          + SE  A+   + +  +L + P  R +A+  L H W+ 
Sbjct: 249 ---------PQWK---------KVSE-SAK---DLIRKMLTYVPSMRISARDALDHEWIQ 286

Query: 299 LRNSTRDETKNKSNVEKVD-----VGMSKL 323
                +      S    +       G  KL
Sbjct: 287 TYTKEQISVDVPSLDNAILNIRQFQGTQKL 316

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V E    G+    +I   R+   E      I + +L+G+ Y+H +  I+H DLKPEN+L
Sbjct: 103 LVGEVYTGGELFDEIISRKRFS--E-VDAARIIRQVLSGITYMH-KNKIVHRDLKPENLL 158

Query: 59  LVSTIDPSK 67
           L S    + 
Sbjct: 159 LESKSKDAN 167

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +E +G    +L K      +    + ++   I+  L YL  + G+IH D+KP NILL
Sbjct: 101 IAMELMGTCAEKLKKR-MQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILL 158

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 51/168 (30%)

Query: 137 CKVVDFGNACRANKQFAE--EIQTRQYRAPEVI-----LRAGYSFSVDMWSFACTAFELA 189
            K+ DFG + R     A+        Y APE I      +  Y    D+WS   +  ELA
Sbjct: 164 IKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELA 223

Query: 190 TGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKF 249
           TG   +                   E++ K+                   +   +     
Sbjct: 224 TGQFPYKNCKT------------DFEVLTKVL----------------QEEPPLLPGHMG 255

Query: 250 WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           +S                 +F  F+   L     KRP   + L+H ++
Sbjct: 256 FS----------------GDFQSFVKDCLTKDHRKRPKYNKLLEHSFI 287

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 60/188 (31%)

Query: 125 KPERCL-----DGIDMRCKVVDFGNACR------ANKQFAEEIQTRQYRAPEVI---LRA 170
           KP   L         ++  + DFG   +      +  + +    T  + APE++    + 
Sbjct: 145 KPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKE 204

Query: 171 GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ 230
             +++VD++S  C  + + +            F +     A    L+G            
Sbjct: 205 NPTYTVDIFSAGCVFYYVISEGSHP-------FGKSLQRQA--NILLGA----------- 244

Query: 231 SKDYFDRHGDLKRIRRLKFWSLD-RLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ 289
                     L  +   K   +  R L++K                 ++   P+KRP+A+
Sbjct: 245 --------CSLDCLHPEKHEDVIARELIEK-----------------MIAMDPQKRPSAK 279

Query: 290 QCLQHPWL 297
             L+HP+ 
Sbjct: 280 HVLKHPFF 287

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           + +E    +L   ++   +  L L +   + +   +GL +LH  L I+H DLKP NIL+ 
Sbjct: 95  IAIELCAATLQEYVEQKDFAHLGL-EPITLLQQTTSGLAHLH-SLNIVHRDLKPHNILIS 152

Query: 61  STIDPSKDPIRS---GLTPILERPEGSINGGSTSTMT-------IVEKKLKRRAKRAV 108
                 K        GL   L     S +  S    T       ++ +  K      V
Sbjct: 153 MPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTV 210

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 35/179 (19%), Positives = 55/179 (30%), Gaps = 64/179 (35%)

Query: 134 DMRCKVVDFGNAC---------------RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           D   KV DFG                   A      ++ T+ Y +PE I    YS  VD+
Sbjct: 200 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDI 259

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           +S     FE     +L++  +              ME                     R 
Sbjct: 260 FSLGLILFE-----LLYSFSTQ-------------ME---------------------RV 280

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +  +R LKF     L   KY        +    +  +L  +P +RP A   +++   
Sbjct: 281 RIITDVRNLKF---PLLFTQKY-------PQEHMMVQDMLSPSPTERPEATDIIENAIF 329

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 2   VLEFL-GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            ++    ++L   +         E      I   I   +++LH + G++H DLKP NI  
Sbjct: 139 QMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFF 197

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 1   MVLEFLGDSLLRLIKY---SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           + +E +  S  +  KY        +    + +I    +  L++L   L IIH D+KP NI
Sbjct: 98  ICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNI 157

Query: 58  LL 59
           LL
Sbjct: 158 LL 159

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 48/166 (28%)

Query: 138 KVVDFGNACRANKQFAE--EIQTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATG 191
           K+ DFG + +     A+  +   R Y APE I     R GY    D+WS   T +ELATG
Sbjct: 166 KLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATG 225

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              +   +             + + + ++ +                       +L    
Sbjct: 226 RFPYPKWNS------------VFDQLTQVVKGDPP-------------------QLSN-- 252

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                 ++  FS      F  F+   L     KRP  ++ L+HP++
Sbjct: 253 -----SEEREFSP----SFINFVNLCLTKDESKRPKYKELLKHPFI 289

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 43/170 (25%), Positives = 63/170 (37%), Gaps = 49/170 (28%)

Query: 138 KVVDFG-NACRANKQFAEEIQTRQ-------YRAPEVILRA-GYSFSVDMWSFACTAFEL 188
           ++ DFG +A  A        + R+       + APEV+ +  GY F  D+WSF  TA EL
Sbjct: 161 QIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIEL 220

Query: 189 ATGDMLFAPKSGQGFCEDEDHL-ALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
           ATG    AP            +  LM+ L    P                   ++    L
Sbjct: 221 ATGA---APYH------KYPPMKVLMLTLQNDPPS--------------LETGVQDKEML 257

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           K +                 + F + +   L   PEKRPTA + L+H + 
Sbjct: 258 KKYG----------------KSFRKMISLCLQKDPEKRPTAAELLRHKFF 291

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVRE------ICKYILTGLDYLHRELGIIHTDLK 53
           +V++ L G S+L +IK+   KG   + V +      I + +L GL+YLH+  G IH D+K
Sbjct: 90  LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN-GQIHRDVK 148

Query: 54  PENILL 59
             NILL
Sbjct: 149 AGNILL 154

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 138 KVVDFGNACRA--------NKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFEL 188
           K+ DFG A RA          ++   + T  YR PE++L    Y   +D+W   C   E+
Sbjct: 164 KLADFGLA-RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEM 222

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 248
            T   +    +      ++  LAL+ +L G            + + +    + +   +L+
Sbjct: 223 WTRSPIMQGNT------EQHQLALISQLCG-SI---------TPEVWPNVDNYELYEKLE 266

Query: 249 FW-SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                 R + D+ +    D     + +  LL   P +R  +   L H +  
Sbjct: 267 LVKGQKRKVKDRLKAYVRDPYAL-DLIDKLLVLDPAQRIDSDDALNHDFFW 316

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V +F    L  L+  +      L++++ + + +L GL Y+HR   I+H D+K  N+L+
Sbjct: 101 LVFDFCEHDLAGLLS-NVLVKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLI 157

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 50/176 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSF 181
           K +      D   ++ DFG A    +  + A     T  Y +PE+     Y+   D+W+ 
Sbjct: 152 KSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWAL 211

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
            C  +EL T    F   S             M  L+     KI              G  
Sbjct: 212 GCVLYELCTLKHAFEAGS-------------MKNLV----LKI------------ISGSF 242

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +                 +S     +    +  L    P  RP+    L+  ++
Sbjct: 243 PPV--------------SLHYSY----DLRSLVSQLFKRNPRDRPSVNSILEKGFI 280

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+++  G  L + I   +    + +++ +    I   L ++H +  I+H D+K +NI L
Sbjct: 100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH-DRKILHRDIKSQNIFL 158

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 52/198 (26%)

Query: 125 KPERCL---DGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K++DFG +   + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY-FDRH 238
           S     + L +G   F  K+             +++ +            ++  Y FD  
Sbjct: 207 SAGVILYILLSGTPPFYGKNEYD----------ILKRV------------ETGKYAFDL- 243

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                      W            S+ DA+   + +  +L F P  R TA QCL+HPW+ 
Sbjct: 244 ---------PQWR---------TISD-DAK---DLIRKMLTFHPSLRITATQCLEHPWIQ 281

Query: 299 LRNSTRDETKNKSNVEKV 316
             +S      +  ++E  
Sbjct: 282 KYSSETPTISDLPSLESA 299

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V E    G+    +IK  R+   E +    I K + +G+ Y+H +  I+H DLKPENIL
Sbjct: 98  IVGELYTGGELFDEIIKRKRFS--E-HDAARIIKQVFSGITYMH-KHNIVHRDLKPENIL 153

Query: 59  LVSTIDPSK 67
           L S      
Sbjct: 154 LESKEKDCD 162

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 61.5 bits (149), Expect = 7e-11
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 125 KPERCL-----------DGIDMRCKVVDFGNAC-----RANKQFAEEIQTRQYRAPEVIL 168
           KP+  +           D +     ++D G +           F  + +T  ++  E++ 
Sbjct: 199 KPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLS 258

Query: 169 RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQ 201
              +++ +D +  A T + +  G  +     G 
Sbjct: 259 NKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG 291

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 1   MVLEFL-GDSLLRLI---KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V E     +LL  I   K +  K +    V      +L  ++ +H +  IIH D+KP+N
Sbjct: 144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH-DCEIIHGDIKPDN 202

Query: 57  ILLVSTIDPSKD 68
            +L +      D
Sbjct: 203 FILGNGFLEQDD 214

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 33/197 (16%), Positives = 57/197 (28%), Gaps = 64/197 (32%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----------------TRQYRAPEVI 167
           KP           K+ DFG A   ++                        T  Y A EV+
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 168 LRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 226
              G Y+  +DM+S     FE+              F    + + ++             
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIYP-----------FSTGMERVNIL------------- 238

Query: 227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP 286
                          K++R +              F +   +   + +  L+D  P KRP
Sbjct: 239 ---------------KKLRSVSI-EFPP------DFDDNKMKVEKKIIRLLIDHDPNKRP 276

Query: 287 TAQQCLQHPWLSLRNST 303
            A+  L   WL +++  
Sbjct: 277 GARTLLNSGWLPVKHQD 293

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +E+    +L  LI  S     + ++   + + IL  L Y+H + GIIH DLKP NI +
Sbjct: 92  IQMEYCENGTLYDLIH-SENLNQQRDEYWRLFRQILEALSYIHSQ-GIIHRDLKPMNIFI 149

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 39/176 (22%), Positives = 60/176 (34%), Gaps = 50/176 (28%)

Query: 125 KPERCLDGIDMRCKVVDFG--NACRANKQFAE-EIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KP           K+ DFG       +  FA+  + T  Y +PE + R  Y+   D+WS 
Sbjct: 143 KPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSL 202

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
            C  +EL      F   S               EL GK                      
Sbjct: 203 GCLLYELCALMPPFTAFS-------------QKELAGK---------------------- 227

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             IR  KF  +        R+S+    E  E +  +L+     RP+ ++ L++P +
Sbjct: 228 --IREGKFRRIPY------RYSD----ELNEIITRMLNLKDYHRPSVEEILENPLI 271

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLEL--NKVREICKYILTGLDYLHRE----LGIIHTDL 52
           +V+E+   GD L  +I     +   L    V  +   +   L   HR       ++H DL
Sbjct: 84  IVMEYCEGGD-LASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDL 142

Query: 53  KPENILL 59
           KP N+ L
Sbjct: 143 KPANVFL 149

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 55/167 (32%)

Query: 138 KVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFELAT 190
           K+ D G      + F+ +            Y +PE I   GY+F  D+WS  C  +E+A 
Sbjct: 176 KLGDLGLG----RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA 231

Query: 191 GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFW 250
               F       + +  +  +L                             K+I +  + 
Sbjct: 232 LQSPF-------YGDKMNLYSLC----------------------------KKIEQCDY- 255

Query: 251 SLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
               L  D Y  SE    E  + +   ++  PEKRP           
Sbjct: 256 --PPLPSDHY--SE----ELRQLVNMCINPDPEKRPDVTYVYDVAKR 294

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 2   VLEFLGD-SLLRLIKYSRYKGLEL--NKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           VLE      L R+IK+ + +   +    V +    + + L+++H    ++H D+KP N+ 
Sbjct: 110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH-SRRVMHRDIKPANVF 168

Query: 59  L 59
           +
Sbjct: 169 I 169

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 125 KPERCL-DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KP   L        K+ DFG AC           +  + APEV   + YS   D++S+  
Sbjct: 132 KPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGI 191

Query: 184 TAFELATGDMLFA 196
             +E+ T    F 
Sbjct: 192 ILWEVITRRKPFD 204

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MVLEFL-GDSLLRLI-KYSRYKGLELNKVREICKYILTGLDYLHRE--LGIIHTDLKPEN 56
           +V+E+  G SL  ++                 C     G+ YLH      +IH DLKP N
Sbjct: 76  LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPN 135

Query: 57  ILLVS 61
           +LLV+
Sbjct: 136 LLLVA 140

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 49/173 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A       +  T  Y  PE+I    +   VD+W    
Sbjct: 141 KPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGV 200

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E   G     P     F +   H                                +R
Sbjct: 201 LCYEFLVG---MPP-----F-DSPSHTETH----------------------------RR 223

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           I  +             +F    +    + +  LL + P +R   +  ++HPW
Sbjct: 224 IVNV-----------DLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPW 265

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++LEF     L + ++  ++   +  +     + +   L Y H    +IH D+KPEN+L+
Sbjct: 91  LMLEFAPRGELYKELQ--KHGRFDEQRSATFMEELADALHYCHE-RKVIHRDIKPENLLM 147

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 30/176 (17%), Positives = 49/176 (27%), Gaps = 53/176 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 180
                L   +M  K+ DFG A +      E+  T      Y +PE+  R+ +    D+WS
Sbjct: 139 TLSNLLLTRNMNIKIADFGLATQLKMP-HEKHYTLCGTPNYISPEIATRSAHGLESDVWS 197

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  + L  G   F         + +                                 
Sbjct: 198 LGCMFYTLLIGRPPF---------DTDTVKNT---------------------------- 220

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           L ++               Y      + E  + +  LL   P  R +    L HP+
Sbjct: 221 LNKVVLA-----------DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPF 265

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VLE      + R +K +R K    N+ R     I+TG+ YLH   GI+H DL   N+LL
Sbjct: 88  LVLEMCHNGEMNRYLK-NRVKPFSENEARHFMHQIITGMLYLHS-HGILHRDLTLSNLLL 145

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 35/176 (19%), Positives = 52/176 (29%), Gaps = 53/176 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 180
           K        D+  K+ DFG A +      E  +       Y APEV+ + G+SF VD+WS
Sbjct: 168 KLGNLFLNEDLEVKIGDFGLATKVEYD-GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 226

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  + L  G   F         E                                   
Sbjct: 227 IGCIMYTLLVGKPPF---------ETSCLKET---------------------------- 249

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             RI++            +Y   +      A  +  +L   P  RPT  + L   +
Sbjct: 250 YLRIKKN-----------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEF 294

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VLE     SLL L K  R K L   + R   + I+ G  YLHR   +IH DLK  N+ L
Sbjct: 118 VVLELCRRRSLLELHK--RRKALTEPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 174

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 35/176 (19%), Positives = 53/176 (30%), Gaps = 53/176 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 180
           K        D+  K+ DFG A +  +   E  +       Y APEV+ + G+SF VD+WS
Sbjct: 142 KLGNLFLNEDLEVKIGDFGLATKV-EYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 200

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C  + L  G   F         E                                   
Sbjct: 201 IGCIMYTLLVGKPPF---------ETSCLKET---------------------------- 223

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
             RI++            +Y   +      A  +  +L   P  RPT  + L   +
Sbjct: 224 YLRIKKN-----------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEF 268

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MVLEF-LGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VLE     SLL L K  R K L   + R   + I+ G  YLHR   +IH DLK  N+ L
Sbjct: 92  VVLELCRRRSLLELHK--RRKALTEPEARYYLRQIVLGCQYLHR-NRVIHRDLKLGNLFL 148

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 64/182 (35%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQTRQ-----------YRAPEVIL-------RAGYSFS 175
           ++R  + DFG      K+      + +           +RAPE++        +   + S
Sbjct: 164 NLRILISDFGLC----KKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS 219

Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
           +D++S  C  + + +                           GK P            + 
Sbjct: 220 IDIFSMGCVFYYILSK--------------------------GKHP------------FG 241

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           D++     I R  F SLD +   K     +   E  + +  ++D  P KRPTA + L+HP
Sbjct: 242 DKYSRESNIIRGIF-SLDEM---KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHP 297

Query: 296 WL 297
             
Sbjct: 298 LF 299

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVRE-----ICKYILTGLDYLHRELGIIHTDLKPE 55
           + LE    +L  L++        L   +E     + + I +G+ +LH  L IIH DLKP+
Sbjct: 86  IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH-SLKIIHRDLKPQ 144

Query: 56  NILLVSTIDPSKDP 69
           NIL+ ++   + D 
Sbjct: 145 NILVSTSSRFTADQ 158

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 2   VLEFL-GDSLLRLIKYSRYKGLELNK--VREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            +E + G SL  L++ S++  L+ N+  +    K IL GL YLH    I+H D+K +N+L
Sbjct: 97  FMEQVPGGSLSALLR-SKWGPLKDNEQTIGFYTKQILEGLKYLHDN-QIVHRDIKGDNVL 154

Query: 59  L 59
           +
Sbjct: 155 I 155

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFAEEIQ---TRQYRAPEVILRA--GYSFSVDMWSFACT 184
           ++      K+ DFG + R             T QY APE+I +   GY  + D+WS  CT
Sbjct: 155 INTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCT 214

Query: 185 AFELATG 191
             E+ATG
Sbjct: 215 IIEMATG 221

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 57.9 bits (140), Expect = 1e-09
 Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 64/203 (31%)

Query: 125 KPERCL--DGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG--YS 173
           KPE  L         K+VDFG +    K    E         T  + APEV+      Y 
Sbjct: 195 KPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYG 254

Query: 174 FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD 233
              D WS       L  G + F            +    +         ++       K 
Sbjct: 255 PKCDAWSAGVLLHLLLMGAVPF---------PGVNDADTI--------SQVLNK----KL 293

Query: 234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
            F+             ++           S   AR+    L  LL+   ++R  A + LQ
Sbjct: 294 CFEN----------PNYN---------VLSP-LARDL---LSNLLNRNVDERFDAMRALQ 330

Query: 294 HPWLSLRNSTRDETKNKSNVEKV 316
           HPW+         ++    + K+
Sbjct: 331 HPWI---------SQFSDKIYKM 344

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
            +  I + I + L YLH   GI H D+KPEN L  +
Sbjct: 169 LISNIMRQIFSALHYLH-NQGICHRDIKPENFLFST 203

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 56/181 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVD 177
           K +  L  +D R K+ DFG       Q ++++  R+       + APEVI R+ Y+  VD
Sbjct: 168 KSDSILLTLDGRVKLSDFGFC----AQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVD 223

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS      E+  G+    P          D     M+ +   P                
Sbjct: 224 IWSLGIMVIEMVDGE---PPYF-------SDSPVQAMKRLRDSPP--------------- 258

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                +++     S                    +FL  +L   P++R TAQ+ L HP+L
Sbjct: 259 ----PKLKNSHKVS----------------PVLRDFLERMLVRDPQERATAQELLDHPFL 298

Query: 298 S 298
            
Sbjct: 299 L 299

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +++EFL G +L  ++   R   L   ++  +C+ +L  L YLH + G+IH D+K ++ILL
Sbjct: 119 VLMEFLQGGALTDIVSQVR---LNEEQIATVCEAVLQALAYLHAQ-GVIHRDIKSDSILL 174

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 64/179 (35%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQ---------------TRQYRAPEVILRAGYSFSVDM 178
           D   KV DFG     ++   E+                 T+ Y +PE I    YS  VD+
Sbjct: 154 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI 213

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           +S     FE     +L+   +                                    +R 
Sbjct: 214 FSLGLILFE-----LLYPFSTQ----------------------------------MERV 234

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             L  +R LKF     L   KY             +  +L  +P +RP A   +++   
Sbjct: 235 RTLTDVRNLKF---PPLFTQKY-------PCEYVMVQDMLSPSPMERPEAINIIENAVF 283

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 7   GDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            ++L   +         E +    I   I   +++LH   G++H DLKP NI  
Sbjct: 99  KENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH-SKGLMHRDLKPSNIFF 151

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 43/192 (22%), Positives = 64/192 (33%), Gaps = 57/192 (29%)

Query: 125 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVI---LRAGYSFSV 176
           KPE  L      D   K+ DFG                T  Y APEV+     AGY+ +V
Sbjct: 266 KPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV 325

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ-SKDYF 235
           D WS     F   +G   + P     F E    ++L          +I  G      + +
Sbjct: 326 DCWSLGVILFICLSG---YPP-----FSEHRTQVSLK--------DQITSGKYNFIPEVW 369

Query: 236 DRHGDLKR--IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
               +     +++L       L+VD                       P+ R T ++ L+
Sbjct: 370 AEVSEKALDLVKKL-------LVVD-----------------------PKARFTTEEALR 399

Query: 294 HPWLSLRNSTRD 305
           HPWL   +  R 
Sbjct: 400 HPWLQDEDMKRK 411

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +VLE +  G+   +++   R K  E    +     +L  + YLH E GIIH DLKPEN+L
Sbjct: 216 IVLELMEGGELFDKVVGNKRLK--E-ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVL 271

Query: 59  LVSTIDPSK 67
           L S  +   
Sbjct: 272 LSSQEEDCL 280

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 40/181 (22%), Positives = 60/181 (33%), Gaps = 56/181 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVD 177
           K +  L G+D   K+ DFG       Q   E   R        + APEV+ R  Y   VD
Sbjct: 143 KSDNILLGMDGSVKLTDFGFC----AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 198

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS    A E+  G+    P          ++    + LI                    
Sbjct: 199 IWSLGIMAIEMIEGE---PPYL-------NENPLRALYLIATNGT--------------- 233

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                 ++  +  S                  F +FL   L+   EKR +A++ LQH +L
Sbjct: 234 ----PELQNPEKLS----------------AIFRDFLNRCLEMDVEKRGSAKELLQHQFL 273

Query: 298 S 298
            
Sbjct: 274 K 274

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+L G SL  ++  +    ++  ++  +C+  L  L++LH    +IH D+K +NILL
Sbjct: 94  VVMEYLAGGSLTDVVTETC---MDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILL 149

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+EF    S+  LIK ++   L+   +  IC+ IL GL +LH+   +IH D+K +N+LL
Sbjct: 104 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLL 162

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 22/72 (30%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQYR----------APEVILR-----AGYSFSVDMWS 180
             K+VDFG +       A+  +T   R          APEVI       A Y F  D+WS
Sbjct: 167 EVKLVDFGVS-------AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWS 219

Query: 181 FACTAFELATGD 192
              TA E+A G 
Sbjct: 220 LGITAIEMAEGA 231

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 13/76 (17%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ---------TRQYRAPEVILRAGYSFS 175
           KPE  L   DM  ++ DFG A    K  + E +         T QY +PE++       S
Sbjct: 157 KPENILLNEDMHIQITDFGTA----KVLSPESKQARANSFVGTAQYVSPELLTEKSACKS 212

Query: 176 VDMWSFACTAFELATG 191
            D+W+  C  ++L  G
Sbjct: 213 SDLWALGCIIYQLVAG 228

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I++ L+YLH   GIIH DLKPENILL
Sbjct: 139 IVSALEYLH-GKGIIHRDLKPENILL 163

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 34/204 (16%), Positives = 64/204 (31%), Gaps = 49/204 (24%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAG--YSFSVDM 178
           KP   L   + R K+ DFG    +     ++I+      ++  PE            VD+
Sbjct: 179 KPSNILMDKNGRVKLSDFG---ESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDI 235

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS     + +        P     F      + L           I            R 
Sbjct: 236 WSLGICLYVMFYN---VVP-----FSLKISLVELF--------NNI------------RT 267

Query: 239 GDLK---RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
            +++         +   ++       F   +  +F   L   L   P +R T++  L+H 
Sbjct: 268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDF---LKLFLRKNPAERITSEDALKHE 324

Query: 296 WLS------LRNSTRDETKNKSNV 313
           WL+      LR  +++  K +  +
Sbjct: 325 WLADTNIEDLREFSKELYKKRKKL 348

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 1   MVLEFL-GDSLLRLI------KYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLK 53
           ++ E++  DS+L+          +    + +  ++ I K +L    Y+H E  I H D+K
Sbjct: 120 IIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVK 179

Query: 54  PENILL 59
           P NIL+
Sbjct: 180 PSNILM 185

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 68
           +  +  K IL G+ YLH    I H DLKPENI+L+    P+  
Sbjct: 109 EATQFLKQILDGVHYLH-SKRIAHFDLKPENIMLLDKNVPNPR 150

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 125 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  +    +  + R K++DFG A +  A  +F     T ++ APE++         DM
Sbjct: 135 KPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADM 194

Query: 179 WS 180
           WS
Sbjct: 195 WS 196

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK 310
           LL   P++R T  Q L+H W+          ++ 
Sbjct: 249 LLVKDPKRRMTIAQSLEHSWIKAIRRRNVRGEDS 282

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 56/169 (33%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQ-------YRAPEVILRAGYSFSVDMWSFACTAFEL 188
             K+ DFG A     Q  + +  R        + APEVI   GY+   D+WS   TA E+
Sbjct: 163 HAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEM 218

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 248
           A G     P +       + H    + +I   P                          +
Sbjct: 219 AEGK---PPYA-------DIHPMRAIFMIPTNPPP----------------------TFR 246

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                        +S+     F +F+   L  +PE+R TA Q LQHP++
Sbjct: 247 ---------KPELWSD----NFTDFVKQCLVKSPEQRATATQLLQHPFV 282

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+    S+  +I+  R K L  +++  I +  L GL+YLH     IH D+K  NILL
Sbjct: 101 IVMEYCGAGSVSDIIR-LRNKTLTEDEIATILQSTLKGLEYLHFM-RKIHRDIKAGNILL 158

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+   S   L++  + K L+  ++  +    L GL YLH    +IH D+K  NILL
Sbjct: 131 LVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILL 187

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 136 RCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELAT 190
             K+ DFG+A        F   + T  + APEVIL      Y   VD+WS   T  ELA 
Sbjct: 192 LVKLGDFGSASIMAPANSF---VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 248

Query: 191 GD 192
             
Sbjct: 249 RK 250

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 55/193 (28%)

Query: 125 KPERCL---DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  L   +  ++  K++DFG A      N+       T  Y APE++ + GY  S D+
Sbjct: 133 KPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDL 192

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS     + + +G + F        C     +                            
Sbjct: 193 WSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI---------------------------- 224

Query: 239 GDLKRIRRLKF------WSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL 292
             +K+I++  F      W            S+ +A++  + L   L   P KR       
Sbjct: 225 --MKKIKKGDFSFEGEAWK---------NVSQ-EAKDLIQGL---LTVDPNKRLKMSGLR 269

Query: 293 QHPWLSLRNSTRD 305
            + WL   +    
Sbjct: 270 YNEWLQDGSQLSS 282

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
             I + +++ + ++H ++G++H DLKPEN+L     D  +
Sbjct: 109 SYIMRKLVSAVSHMH-DVGVVHRDLKPENLLFTDENDNLE 147

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 68
           +     K IL G++YLH    I H DLKPENI+L+    P   
Sbjct: 116 EATSFIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIPH 157

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 125 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  +    +      K++DFG A       +F     T ++ APE++         DM
Sbjct: 142 KPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADM 201

Query: 179 WS 180
           WS
Sbjct: 202 WS 203

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 313
           LL     KR T Q+ L+HPW++  ++ +   + +S V
Sbjct: 256 LLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVV 292

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 61/182 (33%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE----IQTRQYRAPEVILRAG-----YSFS 175
           +P   +        +  F +  R                +  A  ++          +F+
Sbjct: 238 RPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFA 297

Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
            D W+     + +   D+             +D      E I                  
Sbjct: 298 FDTWTLGLAIYWIWCADLPN----------TDDAALGGSEWI------------------ 329

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
                                       +         L   L +  E R    Q ++ P
Sbjct: 330 --------------------FRSCKNIPQ----PVRALLEGFLRYPKEDRLLPLQAMETP 365

Query: 296 WL 297
             
Sbjct: 366 EY 367

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 49.7 bits (118), Expect = 7e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 3   LEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           L+  G+ LL     S +K L  +   ++   ++  L  LH   G++HT L+P +I+L
Sbjct: 191 LQTFGEVLLSHS--STHKSLVHHARLQLTLQVIRLLASLHH-YGLVHTYLRPVDIVL 244

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +VLE +  G+   +++   R K  E    +     +L  + YLH E GIIH DLKPEN+L
Sbjct: 91  IVLELMEGGELFDKVVGNKRLK--E-ATCKLYFYQMLLAVQYLH-ENGIIHRDLKPENVL 146

Query: 59  LVSTIDPSK 67
           L S  +   
Sbjct: 147 LSSQEEDCL 155

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 125 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVI---LRAGYSFSV 176
           KPE  L      D   K+ DFG                T  Y APEV+     AGY+ +V
Sbjct: 141 KPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV 200

Query: 177 DMWS 180
           D WS
Sbjct: 201 DCWS 204

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSN 312
           LL   P+ R T ++ L+HPWL   +  R      S 
Sbjct: 258 LLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSE 293

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 59/382 (15%), Positives = 117/382 (30%), Gaps = 107/382 (28%)

Query: 1   MVLEFLGDSL-------------------LRLIKYSRYKGLELNKVREICKYILTGLDYL 41
           MV +F+ + L                   +    Y   +    N  +   KY ++ L   
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-P 136

Query: 42  HRELGIIHTDLKPENILLV--------STIDPSKDPIRSGLTPILERPEGSI---NGGST 90
           + +L     +L+P   +L+        + +  + D   S    +  + +  I   N  + 
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLS--YKVQCKMDFKIFWLNLKNC 192

Query: 91  STMTIVEKKLKRRAKRAVANISIRRASMGGIELP--------------KP-ERCL----- 130
           ++   V + L++   +   N + R      I+L               KP E CL     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 131 -------DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSFA 182
                  +  ++ CK++               + TR  +  + +  A  +  S+D  S  
Sbjct: 253 VQNAKAWNAFNLSCKIL---------------LTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
            T  E+ +   L         C  +D   L  E++   PR+++I     +D         
Sbjct: 298 LTPDEVKS---LLLKYLD---CRPQD---LPREVLTTNPRRLSIIAESIRDGLAT---WD 345

Query: 243 RIRRLKFWSLDRLLVDKYR-FSETDARE-FAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
             + +    L  ++          + R+ F    V    F P         L   W    
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----F-PPSAHIPTILLSLIWF--- 397

Query: 301 NSTRDET-------KNKSNVEK 315
           +  + +           S VEK
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 56/311 (18%), Positives = 97/311 (31%), Gaps = 101/311 (32%)

Query: 3   LEFLGDSLLRLIKYSRYKG--LELNKVR--EI-------CKYILTGLDYLHRELGIIHTD 51
           +  +   L RL+K   Y+   L L  V+  +        CK +LT      R   +    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQVT-DF 280

Query: 52  LKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAK---RAV 108
           L         T   S D     LTP     E           +++ K L  R +   R V
Sbjct: 281 LSAAT-----TTHISLDHHSMTLTP----DE---------VKSLLLKYLDCRPQDLPREV 322

Query: 109 ANISIRRASMGGIELPKPERCLDGIDM--RCKVVDFGNACRANKQFAEEIQTRQYRA--- 163
              + RR S+        E   DG+      K V+        +     ++  +YR    
Sbjct: 323 LTTNPRRLSIIA------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 164 -----------PEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL 212
                      P ++L      S+ +W            D+              D    
Sbjct: 377 RLSVFPPSAHIPTILL------SL-IW-----------FDV-----------IKSD---- 403

Query: 213 MMELIGKMPRKIAIGGAQSKDY----FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR 268
           +M ++ K+ +   +   Q K+        + +LK     ++ +L R +VD Y        
Sbjct: 404 VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEY-ALHRSIVDHYNI--PKTF 459

Query: 269 EFAEFLVPLLD 279
           +  + + P LD
Sbjct: 460 DSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 41/322 (12%), Positives = 83/322 (25%), Gaps = 109/322 (33%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDY--LHRELGIIHTDLKPENIL 58
           ++ E + D L     +      +L  + E    +L   +Y  +   L +      P +  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSA- 385

Query: 59  LVSTIDPSKDPIRSGLTPIL--ERPEGSINGGSTSTMTIVE---KK--LKRRAKRAVANI 111
                      I + L  ++  +  +       +  M +V    K   ++++ K      
Sbjct: 386 ----------HIPTILLSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKE----- 423

Query: 112 SIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG 171
                S+  I L    +  +   +   +VD                   Y  P+      
Sbjct: 424 --STISIPSIYLELKVKLENEYALHRSIVD------------------HYNIPK------ 457

Query: 172 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHL--ALMMELIGKMPRKIAIGGA 229
              + D              D  F    G        HL      E +            
Sbjct: 458 ---TFDSDDLI-----PPYLDQYFYSHIG-------HHLKNIEHPERMTLFRMV------ 496

Query: 230 QSKDYFD--------RHGDLKRIRRLKFWSLDRLLVD--KYR--FSETDAREFAEFLVPL 277
               + D        RH            S+   L     Y+    + D  ++   +  +
Sbjct: 497 ----FLDFRFLEQKIRHDSTAWNAS---GSILNTLQQLKFYKPYICDNDP-KYERLVNAI 548

Query: 278 LDFTPEKRPTAQQCLQHPWLSL 299
           LDF P+     +  +   +  L
Sbjct: 549 LDFLPK---IEENLICSKYTDL 567

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 68
           +  E  K IL G+ YLH  L I H DLKPENI+L+    P   
Sbjct: 115 EATEFLKQILNGVYYLH-SLQIAHFDLKPENIMLLDRNVPKPR 156

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 125 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  +    +    R K++DFG A +     +F     T ++ APE++         DM
Sbjct: 141 KPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADM 200

Query: 179 WS 180
           WS
Sbjct: 201 WS 202

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 311
           LL   P+KR T Q  LQHPW+  +++ +  ++  S
Sbjct: 255 LLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKAS 289

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD 68
           +     K IL G++YLH    I H DLKPENI+L+    P   
Sbjct: 116 EATSFIKQILDGVNYLH-TKKIAHFDLKPENIMLLDKNIPIPH 157

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 125 KPERCL----DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  +    +      K++DFG A       +F     T ++ APE++         DM
Sbjct: 142 KPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADM 201

Query: 179 WS 180
           WS
Sbjct: 202 WS 203

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 313
           LL     KR T Q+ L+HPW++  ++ +   + +S V
Sbjct: 256 LLVKETRKRLTIQEALRHPWITPVDTQQAMVRRESVV 292

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 26  KVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
            V  + K IL G+ YLH +  I+H DLKP+NILL S      
Sbjct: 132 DVIRLIKQILEGVYYLH-QNNIVHLDLKPQNILLSSIYPLGD 172

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 125 KPERCL---DGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KP+  L          K+VDFG + +     +  E + T +Y APE++     + + DMW
Sbjct: 158 KPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMW 217

Query: 180 S 180
           +
Sbjct: 218 N 218

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNV 313
           LL   PEKRPTA+ CL H WL   +        +++ 
Sbjct: 271 LLVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETSS 307

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
             + + + + LD+LH   GI H DLKPENIL       S 
Sbjct: 114 SVVVQDVASALDFLH-NKGIAHRDLKPENILCEHPNQVSP 152

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 40/202 (19%), Positives = 58/202 (28%), Gaps = 67/202 (33%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQ--------TRQYRAPEVILRA- 170
           KPE  L          K+ DF      + N   +            + +Y APEV+    
Sbjct: 138 KPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFS 197

Query: 171 ----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 226
                Y    D+WS     + L +G   F  + G     D        +    +   I  
Sbjct: 198 EEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ--NMLFESIQE 255

Query: 227 GGAQSKDY-FDRHG---------DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVP 276
           G      Y F             DL  I +L       L+ D                  
Sbjct: 256 G-----KYEFPDKDWAHISCAAKDL--ISKL-------LVRD------------------ 283

Query: 277 LLDFTPEKRPTAQQCLQHPWLS 298
                 ++R +A Q LQHPW+ 
Sbjct: 284 -----AKQRLSAAQVLQHPWVQ 300

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAE---EIQTRQYRAPEVILRAGYSFSVDMWSF 181
           K    L       KV DFG +      F        T ++ APEV+     +   D++SF
Sbjct: 166 KSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSF 225

Query: 182 ACTAFELATGDMLFA 196
               +ELAT    + 
Sbjct: 226 GVILWELATLQQPWG 240

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 1   MVLEFL-GDSLLR-LIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENI 57
           +V E+L   SL R L K    + L+  +   +   +  G++YLH R   I+H +LK  N+
Sbjct: 111 IVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNL 170

Query: 58  LL 59
           L+
Sbjct: 171 LV 172

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +++EF  G ++  ++     +GL   +++ +C+ +L  L++LH +  IIH DLK  N+L+
Sbjct: 93  IMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSK-RIIHRDLKAGNVLM 150

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 22/71 (30%)

Query: 137 CKVVDFGNACRANKQFAEEIQTRQYR----------APEVILR-----AGYSFSVDMWSF 181
            ++ DFG +       A+ ++T Q R          APEV++        Y +  D+WS 
Sbjct: 156 IRLADFGVS-------AKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSL 208

Query: 182 ACTAFELATGD 192
             T  E+A  +
Sbjct: 209 GITLIEMAQIE 219

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
           L+   ++S     EF +FL   LD  PE RP+A Q L+HP++S
Sbjct: 242 LLTPSKWS----VEFRDFLKIALDKNPETRPSAAQLLEHPFVS 280

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++     G +L  +++ ++   L++NK R+I + I+ G+ YLH + GI+H DLK +N+  
Sbjct: 106 IITSLCKGRTLYSVVRDAKIV-LDVNKTRQIAQEIVKGMGYLHAK-GILHKDLKSKNVFY 163

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 17/80 (21%)

Query: 134 DMRCKVVDFGNAC--------RANKQFAEEIQTRQYRAPEVI---------LRAGYSFSV 176
           + +  + DFG           R   +   +     + APE+I          +  +S   
Sbjct: 165 NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHS 224

Query: 177 DMWSFACTAFELATGDMLFA 196
           D+++     +EL   +  F 
Sbjct: 225 DVFALGTIWYELHAREWPFK 244

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V ++  G SL   +  S  K  E+ K+ +I +    G+DYLH +  IIH DLK  NI L
Sbjct: 96  IVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAK-SIIHRDLKSNNIFL 153

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 125 KPERCLDGIDMRCKVVDFGNA-----CRANKQFAEEIQTRQYRAPEVILRAG---YSFSV 176
           K        D   K+ DFG A        + QF +   +  + APEVI       YSF  
Sbjct: 147 KSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQS 206

Query: 177 DMWSFACTAFELATGDMLFA 196
           D+++F    +EL TG + ++
Sbjct: 207 DVYAFGIVLYELMTGQLPYS 226

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
             + + +L+ + YLH E GI+H DLKPEN+L ++  + SK
Sbjct: 109 SLVIQQVLSAVKYLH-ENGIVHRDLKPENLLYLTPEENSK 147

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA-CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L      + +  + DFG +    N   +    T  Y APEV+ +  YS +VD WS
Sbjct: 133 KPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWS 192

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
               + IL  + Y H   GI+H +LKPEN+LL S    + 
Sbjct: 108 SHCIQQILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 146

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L          K+ DFG A     ++ +     T  Y +PEV+ +  YS  VD+W
Sbjct: 132 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIW 191

Query: 180 S 180
           +
Sbjct: 192 A 192

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE 314
           +L   P+KR TA Q L+ PW+  R         +  V+
Sbjct: 245 MLTVNPKKRITADQALKVPWICNRERVASAIHRQDTVD 282

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR 71
             +   I   ++YLH   G++H DLKP NIL V     + + IR
Sbjct: 119 SAVLFTITKTVEYLH-AQGVVHRDLKPSNILYVDE-SGNPESIR 160

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 15/67 (22%)

Query: 125 KPERCL----DGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAGYS 173
           KP   L     G     ++ DFG A    KQ   E         T  + APEV+ R GY 
Sbjct: 143 KPSNILYVDESGNPESIRICDFGFA----KQLRAENGLLMTPCYTANFVAPEVLERQGYD 198

Query: 174 FSVDMWS 180
            + D+WS
Sbjct: 199 AACDIWS 205

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSN 312
           +L   P +R TA   L+HPW+   +       N+ +
Sbjct: 261 MLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQD 296

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           M+ EF+ G  L   +     K  E ++  E  + +  GL ++H E   +H DLKPENI+ 
Sbjct: 231 MIYEFMSGGELFEKVADEHNKMSE-DEAVEYMRQVCKGLCHMH-ENNYVHLDLKPENIMF 288

Query: 60  VSTIDPS 66
            +     
Sbjct: 289 TTKRSNE 295

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 125 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE            K++DFG        +       T ++ APEV       +  DMWS
Sbjct: 282 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWS 341

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           LL   P  R T  Q L+HPWL+  N+   +++  S+   
Sbjct: 394 LLLADPNTRMTIHQALEHPWLTPGNAPGRDSQIPSSRYT 432

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
               + IL  + Y H   GI+H +LKPEN+LL S    + 
Sbjct: 131 SHCIQQILESIAYCH-SNGIVHRNLKPENLLLASKAKGAA 169

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L          K+ DFG A     ++ +     T  Y +PEV+ +  YS  VD+W
Sbjct: 155 KPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIW 214

Query: 180 S 180
           +
Sbjct: 215 A 215

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           +L   P+KR TA Q L+ PW+  R         +  V+ 
Sbjct: 268 MLTVNPKKRITADQALKVPWICNRERVASAIHRQDTVDC 306

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +++E+L G S L L++      L+  ++  I + IL GLDYLH E   IH D+K  N+LL
Sbjct: 97  IIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLL 152

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 17/67 (25%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQYR----------APEVILRAGYSFSVDMWSFACTA 185
             K+ DFG A        +   T+  R          APEVI ++ Y    D+WS   TA
Sbjct: 157 EVKLADFGVA-------GQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 209

Query: 186 FELATGD 192
            ELA G+
Sbjct: 210 IELARGE 216

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+E    G+   R++    ++  E +    I K +L+ + Y H +L + H DLKPEN L
Sbjct: 83  LVMELCTGGELFERVVHKRVFR--E-SDAARIMKDVLSAVAYCH-KLNVAHRDLKPENFL 138

Query: 59  LVSTIDPSK 67
            ++    S 
Sbjct: 139 FLTDSPDSP 147

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 125 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L   D  D   K++DFG     +  K    ++ T  Y +P+V L   Y    D W
Sbjct: 133 KPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQV-LEGLYGPECDEW 191

Query: 180 S 180
           S
Sbjct: 192 S 192

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRD 305
           LL  +P++R T+ Q L+H W   + S+  
Sbjct: 245 LLTKSPKQRITSLQALEHEWFEKQLSSSP 273

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
               + IL  L Y H +  IIH D+KP  +LL S  + + 
Sbjct: 133 SHYMRQILEALRYCH-DNNIIHRDVKPHCVLLASKENSAP 171

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 125 KPERCL---DGIDMRCKVVDFGNAC---RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KP   L          K+  FG A     +       + T  + APEV+ R  Y   VD+
Sbjct: 157 KPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDV 216

Query: 179 WS 180
           W 
Sbjct: 217 WG 218

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           +L   P +R T  + L HPWL  R+    +      VE+
Sbjct: 270 MLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQ 308

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
            +  K IL  + YLH E GI+H DLKPEN+L  +    + 
Sbjct: 151 ADAVKQILEAVAYLH-ENGIVHRDLKPENLLYATPAPDAP 189

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K+ DFG +              T  Y APE++    Y   VDMW
Sbjct: 175 KPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMW 234

Query: 180 S 180
           S
Sbjct: 235 S 235

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKVDVGMSKL 323
           L+   P+KR T  Q LQHPW++ + +            +      KL
Sbjct: 289 LIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKL 335

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELN--KVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           +V+E++  G+   R+I     +   L         K I  G+ ++H ++ I+H DLKPEN
Sbjct: 163 LVMEYVDGGELFDRIID----ESYNLTELDTILFMKQICEGIRHMH-QMYILHLDLKPEN 217

Query: 57  ILLVSTIDPSKDPIR 71
           IL V+        I+
Sbjct: 218 ILCVN---RDAKQIK 229

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 125 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE   C++    + K++DFG A R    ++      T ++ APEV+     SF  DMWS
Sbjct: 214 KPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWS 273

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK 310
           LL      R +A + L+HPWLS        +  K
Sbjct: 326 LLIKEKSWRISASEALKHPWLSDHKLHSRLSAQK 359

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV+E+    +  ++     K   + +       ++ GL+YLH   GI+H D+KP N+LL
Sbjct: 85  MVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHS-QGIVHKDIKPGNLLL 142

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 57/181 (31%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTRQ----YRAPEVIL-RAGYS-FSVD 177
           KP   L       K+   G A   +   A++  +T Q    ++ PE+      +S F VD
Sbjct: 136 KPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVD 195

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS   T + + TG   F          + D++        K+   I  G          
Sbjct: 196 IWSAGVTLYNITTGLYPF----------EGDNIY-------KLFENIGKGSYAIPGDCGP 238

Query: 238 HGDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              L   ++ +       L  +                       P KR + +Q  QH W
Sbjct: 239 --PLSDLLKGM-------LEYE-----------------------PAKRFSIRQIRQHSW 266

Query: 297 L 297
            
Sbjct: 267 F 267

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELN--KVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           M+ EF+   D   R+         ELN  ++      +   L +LH    I H D++PEN
Sbjct: 78  MIFEFISGLDIFERINT----SAFELNEREIVSYVHQVCEALQFLH-SHNIGHFDIRPEN 132

Query: 57  ILLVS 61
           I+  +
Sbjct: 133 IIYQT 137

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 125 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           +PE            K+++FG A +      F       +Y APEV      S + DMWS
Sbjct: 129 RPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWS 188

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           LL    + R TA + LQHPWL  +   R  TK    ++ 
Sbjct: 241 LLVKERKSRMTASEALQHPWLK-QKIERVSTKVIRTLKH 278

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
               + IL  + + H ++G++H +LKPEN+LL S +  + 
Sbjct: 113 SHCIQQILEAVLHCH-QMGVVHRNLKPENLLLASKLKGAA 151

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE--KVDVGMSKL 323
           +L   P KR TA + L+HPW+S R++       +  V+  K      KL
Sbjct: 251 MLTINPSKRITAAEALKHPWISHRSTVASCMHRQETVDCLKKFNARRKL 299

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 125 KPERCL---DGIDMRCKVVDFGNACR---ANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  L          K+ DFG A       + +     T  Y +PEV+ +  Y   VD+
Sbjct: 137 KPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDL 196

Query: 179 WS 180
           W+
Sbjct: 197 WA 198

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V E    G+    +IK  R+   E +    I K + +G+ Y+H +  I+H DLKPENIL
Sbjct: 98  IVGELYTGGELFDEIIKRKRFS--E-HDAARIIKQVFSGITYMH-KHNIVHRDLKPENIL 153

Query: 59  LVSTIDPSK 67
           L S      
Sbjct: 154 LESKEKDCD 162

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      D   K++DFG +   + N +  + I T  Y APEV LR  Y    D+W
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVW 206

Query: 180 S 180
           S
Sbjct: 207 S 207

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNS 302
           +L F P  R TA QCL+HPW+   +S
Sbjct: 260 MLTFHPSLRITATQCLEHPWIQKYSS 285

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK 67
            E+ K ++  L Y H    ++H DLKPENIL   T   S 
Sbjct: 127 AELMKQMMNALAYFH-SQHVVHKDLKPENILFQDTSPHSP 165

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 125 KPERCL---DGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L          K++DFG     ++++       T  Y APEV  +   +F  D+W
Sbjct: 151 KPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEV-FKRDVTFKCDIW 209

Query: 180 S 180
           S
Sbjct: 210 S 210

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 277 LLDFTPEKRPTAQQCLQHPWL 297
           +L   PE+RP+A Q L H W 
Sbjct: 262 MLTKDPERRPSAAQVLHHEWF 282

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYSFSVDMWS 180
           KPE  L   D   ++ D G      K    + +       + APE++L   Y FSVD ++
Sbjct: 316 KPENVLLDDDGNVRISDLG-LAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFA 374

Query: 181 FACTAFELATG 191
              T +E+   
Sbjct: 375 LGVTLYEMIAA 385

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 1   MVLEFL--GDSLLRLIKY-SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           +V+  +  GD    +        G +  +       I++GL++LH +  II+ DLKPEN+
Sbjct: 262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH-QRNIIYRDLKPENV 320

Query: 58  LL 59
           LL
Sbjct: 321 LL 322

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILL 59
           R+I + +L  +  LH +L I+H DLKPENILL
Sbjct: 127 RKIMRALLEVICALH-KLNIVHRDLKPENILL 157

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA------GYSFSV 176
           KPE  L   DM  K+ DFG +      ++  E   T  Y APE+I  +      GY   V
Sbjct: 151 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 210

Query: 177 DMWS 180
           DMWS
Sbjct: 211 DMWS 214

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK 308
            L   P+KR TA++ L HP+   +    +E +
Sbjct: 267 FLVVQPQKRYTAEEALAHPF--FQQYVVEEVR 296

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/189 (14%), Positives = 50/189 (26%), Gaps = 64/189 (33%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA---------EEIQ---TRQYRAPEVI---LR 169
           KP   L G + +  ++D G+  +A              +      T  YRAPE+      
Sbjct: 161 KPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSH 220

Query: 170 AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA 229
                  D+WS  C  + +                             G+ P        
Sbjct: 221 CVIDERTDVWSLGCVLYAMMF---------------------------GEGP-------- 245

Query: 230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDA--REFAEFLVPLLDFTPEKRPT 287
                +D           K  S+   + ++    ++        + L  ++   P +RP 
Sbjct: 246 -----YDMVF-------QKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPH 293

Query: 288 AQQCLQHPW 296
               L    
Sbjct: 294 IPLLLSQLE 302

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 1   MVLEF-LGDSLLRLIKYSRYKG--LELNKVREICKYILTGLDYLHRELGIIHTDLKPENI 57
           ++L F    +L   I+  + KG  L  +++  +   I  GL+ +H   G  H DLKP NI
Sbjct: 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH-AKGYAHRDLKPTNI 165

Query: 58  LL 59
           LL
Sbjct: 166 LL 167

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
            EI + I T + +LH    I H D+KPEN+L  S
Sbjct: 131 AEIMRDIGTAIQFLH-SHNIAHRDVKPENLLYTS 163

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 125 KPERCL---DGIDMRCKVVDFGNA-CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L      D   K+ DFG A             T  Y APEV+    Y  S DMWS
Sbjct: 155 KPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWS 214

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           LL   P +R T  Q + HPW++          + + V +
Sbjct: 271 LLKTDPTERLTITQFMNHPWINQSMVVPQTPLHTARVLQ 309

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATG 191
            +  KV DFG + ++    +  +   Q+ APE I      Y+   D +SFA   + + TG
Sbjct: 165 PVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTG 224

Query: 192 DMLFA 196
           +  F 
Sbjct: 225 EGPFD 229

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENIL 58
           MV+EF+    L   +   +   ++ +    +   I  G++Y+  +   I+H DL+  NI 
Sbjct: 98  MVMEFVPCGDLYHRLL-DKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIF 156

Query: 59  LVST 62
           L S 
Sbjct: 157 LQSL 160

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VL  LG SL   +  S    L    V ++   +L  L++LH E   +H ++  ENI +
Sbjct: 135 LVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH-ENEYVHGNVTAENIFV 192

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 20/77 (25%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 174
           KPE  L  ID +   +V DFG        FA+ ++ R        +  APE+IL  GY+ 
Sbjct: 168 KPENLL--IDQQGYIQVTDFG--------FAKRVKGRTWTLCGTPEALAPEIILSKGYNK 217

Query: 175 SVDMWSFACTAFELATG 191
           +VD W+     +E+A G
Sbjct: 218 AVDWWALGVLIYEMAAG 234

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I+   +YLH  L +I+ DLKPEN+L+
Sbjct: 150 IVLTFEYLH-SLDLIYRDLKPENLLI 174

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELN--KVREICKYILTGLDYLHRELGIIHTDLKPEN 56
           ++LEFL  G+   R+      +  +++  +V    +    GL ++H E  I+H D+KPEN
Sbjct: 125 LILEFLSGGELFDRIAA----EDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPEN 179

Query: 57  ILLVS 61
           I+  +
Sbjct: 180 IMCET 184

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 125 KPER--CLDGIDMRCKVVDFGNACR--ANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE   C        K++DFG A +   ++       T ++ APE++ R    F  DMW+
Sbjct: 176 KPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWA 235

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEKV 316
           LL   P KR T    L+HPWL   +S        S   K+
Sbjct: 288 LLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKI 327

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVS 61
           R I + +L  + +LH    I+H DLKPENILL  
Sbjct: 203 RSIMRSLLEAVSFLH-ANNIVHRDLKPENILLDD 235

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRA------GYSFSV 176
           KPE  L   +M+ ++ DFG +C     ++  E   T  Y APE++  +      GY   V
Sbjct: 227 KPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEV 286

Query: 177 DMWS 180
           D+W+
Sbjct: 287 DLWA 290

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 277 LLDFTPEKRPTAQQCLQHPWL 297
           LL   PE R TA+Q LQHP+ 
Sbjct: 343 LLQVDPEARLTAEQALQHPFF 363

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKY---ILTGLDYLHRELGIIHTDLKPEN 56
           MV E +    ++ +               +   Y   ++ G++YLH    IIH D+KP N
Sbjct: 115 MVFELVNQGPVMEVPTLKPLS------EDQARFYFQDLIKGIEYLHY-QKIIHRDIKPSN 167

Query: 57  ILL 59
           +L+
Sbjct: 168 LLV 170

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 58/182 (31%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ------YRAPEVI--LRAGYS-FS 175
           KP   L G D   K+ DFG    +N+    +           + APE +   R  +S  +
Sbjct: 164 KPSNLLVGEDGHIKIADFG---VSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKA 220

Query: 176 VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF 235
           +D+W+   T +    G   F          DE  + L          KI     +  D  
Sbjct: 221 LDVWAMGVTLYCFVFGQCPF---------MDERIMCLH--------SKIKSQALEFPDQP 263

Query: 236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP 295
           D   DLK +       + R+L         +               PE R    +   HP
Sbjct: 264 DIAEDLKDL-------ITRMLD-------KN---------------PESRIVVPEIKLHP 294

Query: 296 WL 297
           W+
Sbjct: 295 WV 296

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVST 62
            EI K I   + YLH  + I H D+KPEN+L  S 
Sbjct: 164 SEIMKSIGEAIQYLH-SINIAHRDVKPENLLYTSK 197

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 138 KVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           K+ DFG A    ++        T  Y APEV+    Y  S DMWS
Sbjct: 204 KLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWS 248

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILLVST 62
            EI K I   + YLH  + I H D+KPEN+L  S 
Sbjct: 120 SEIMKSIGEAIQYLH-SINIAHRDVKPENLLYTSK 153

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 277 LLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVEK 315
           LL   P +R T  + + HPW+           + S V K
Sbjct: 240 LLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLK 278

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G SL R       + L + +       IL  L YLH   G+++ DLKPENI+L
Sbjct: 161 IVMEYVGGQSLKRSKG----QKLPVAEAIAYLLEILPALSYLHSI-GLVYNDLKPENIML 215

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 136 RCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
           + K++D G        F     T  ++APE++ R G + + D+++   T   L   
Sbjct: 219 QLKLIDLGAV-SRINSFGYLYGTPGFQAPEIV-RTGPTVATDIYTVGRTLAALTLD 272

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGY---SFSVDMWSF 181
                +   DM  ++         + Q    +    + APE + +        S DMWSF
Sbjct: 140 NSRSVMIDEDMTARISMADVKF--SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSF 197

Query: 182 ACTAFELATGDMLFA 196
           A   +EL T ++ FA
Sbjct: 198 AVLLWELVTREVPFA 212

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENIL 58
           ++  ++   SL  ++       ++ ++  +    +  G+ +LH  E  I    L   +++
Sbjct: 86  LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVM 145

Query: 59  L 59
           +
Sbjct: 146 I 146

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ------YRAPEVILRAGYSFSVDM 178
           KPE  L       ++ D G A        E    +       Y APEV+    Y+FS D 
Sbjct: 313 KPENILLDDHGHIRISDLGLA----VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDW 368

Query: 179 WSFACTAFELATG 191
           W+  C  +E+  G
Sbjct: 369 WALGCLLYEMIAG 381

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VL  + G  L   I +    G    +       I  GL+ LH    I++ DLKPENILL
Sbjct: 261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH-RERIVYRDLKPENILL 319

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K +  L   +   K+ D+G  C+   +  +       T  Y APE++    Y FSVD W+
Sbjct: 137 KLDNVLLDSEGHIKLTDYG-MCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 195

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
                FE+  G   F         +       + ++I
Sbjct: 196 LGVLMFEMMAGRSPFDIVGSSDNPDQNTE-DYLFQVI 231

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I   L+YLH E GII+ DLK +N+LL
Sbjct: 119 ISLALNYLH-ERGIIYRDLKLDNVLL 143

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K +  L   +   K+ D+G  C+   +  +       T  Y APE++    Y FSVD W+
Sbjct: 180 KLDNVLLDSEGHIKLTDYG-MCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 238

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
                FE+  G   F         +       + ++I
Sbjct: 239 LGVLMFEMMAGRSPFDIVGSSDNPDQNTE-DYLFQVI 274

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E++  GD +  +    R + L     R     I   L+YLH E GII+ DLK +N+L
Sbjct: 130 FVIEYVNGGDLMFHM---QRQRKLPEEHARFYSAEISLALNYLH-ERGIIYRDLKLDNVL 185

Query: 59  L 59
           L
Sbjct: 186 L 186

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+E+   GD L  L K+     +     R     I+  +D +H  LG +H D+KP+NIL
Sbjct: 138 LVMEYYVGGDLLTLLSKFGER--IPAEMARFYLAEIVMAIDSVH-RLGYVHRDIKPDNIL 194

Query: 59  L 59
           L
Sbjct: 195 L 195

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +V+++   GD L  L K+     L     R     ++  +D +H +L  +H D+KP+NIL
Sbjct: 151 LVMDYYVGGDLLTLLSKFEDR--LPEEMARFYLAEMVIAIDSVH-QLHYVHRDIKPDNIL 207

Query: 59  L 59
           +
Sbjct: 208 M 208

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 39/160 (24%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR------QYRAPEVIL-----RAG 171
           KP+  L  +DM    ++ DFG+  +  +     +Q+        Y +PE++      +  
Sbjct: 202 KPDNIL--MDMNGHIRLADFGSCLKLMED--GTVQSSVAVGTPDYISPEILQAMEGGKGR 257

Query: 172 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS 231
           Y    D WS     +E+  G+  F           E  +      I  M  K        
Sbjct: 258 YGPECDWWSLGVCMYEMLYGETPF---------YAESLVE-TYGKI--MNHKERFQFPTQ 305

Query: 232 KDYFDRHG-DLKRIRRLKFWSLDRLLVDKYRFSETDAREF 270
                 +  DL  IRRL       +   ++R  +    +F
Sbjct: 306 VTDVSENAKDL--IRRL-------ICSREHRLGQNGIEDF 336

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE--LGIIHTDLKPENI 57
           +V+EF  G  L R++     K +  + +      I  G++YLH E  + IIH DLK  NI
Sbjct: 83  LVMEFARGGPLNRVL---SGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNI 139

Query: 58  LL 59
           L+
Sbjct: 140 LI 141

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC-RANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           +     D  +   K+ DFG A                + APEVI  + +S   D+WS+  
Sbjct: 143 QKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGV 202

Query: 184 TAFELATGDMLFA 196
             +EL TG++ F 
Sbjct: 203 LLWELLTGEVPFR 215

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKG-LELNKVREICKYILTGLDYLH-RELGIIHTDLKPENIL 58
           ++ E     L+  +K    +G L  + V +I       + ++H ++  IIH DLK EN+L
Sbjct: 111 LLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLL 170

Query: 59  L 59
           L
Sbjct: 171 L 171

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 35/192 (18%), Positives = 50/192 (26%), Gaps = 72/192 (37%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQF-----------AEEIQTR----QYRAPEVI-- 167
           K E  L       K+ DFG+A   +               EE  TR     YR PE+I  
Sbjct: 165 KVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDL 224

Query: 168 -LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI 226
                     D+W+  C  + L      F           ED   L          +I  
Sbjct: 225 YSNFPIGEKQDIWALGCILYLLCFRQHPF-----------EDGAKL----------RIVN 263

Query: 227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAR--EFAEFLVPLLDFTPEK 284
           G                               KY     D +   F   +  +L   PE+
Sbjct: 264 G-------------------------------KYSIPPHDTQYTVFHSLIRAMLQVNPEE 292

Query: 285 RPTAQQCLQHPW 296
           R +  + +    
Sbjct: 293 RLSIAEVVHQLQ 304

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E+   G+    L   SR +    ++ R     I++ LDYLH E  +++ DLK EN++
Sbjct: 225 FVMEYANGGELFFHL---SRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLM 281

Query: 59  L 59
           L
Sbjct: 282 L 282

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K E  +   D   K+ DFG  C+   +    ++    T +Y APEV+    Y  +VD W 
Sbjct: 276 KLENLMLDKDGHIKITDFG-LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 334

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
                +E+  G + F       + +D +    + ELI
Sbjct: 335 LGVVMYEMMCGRLPF-------YNQDHEK---LFELI 361

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           ++  LDYL     IIH D+KP+NILL
Sbjct: 124 LVMALDYLQ-NQRIIHRDMKPDNILL 148

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 17/78 (21%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILR---AGYS 173
           KP+  L  +D      + DF  A         E Q      T+ Y APE+      AGYS
Sbjct: 142 KPDNIL--LDEHGHVHITDFNIA----AMLPRETQITTMAGTKPYMAPEMFSSRKGAGYS 195

Query: 174 FSVDMWSFACTAFELATG 191
           F+VD WS   TA+EL  G
Sbjct: 196 FAVDWWSLGVTAYELLRG 213

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G +L   I+   +  L ++        IL G+ + H    I+H D+KP+NIL+
Sbjct: 88  LVMEYIEGPTLSEYIE--SHGPLSVDTAINFTNQILDGIKHAHDM-RIVHRDIKPQNILI 144

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 20/77 (25%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQTR--------QYRAPEVILRAGYSF 174
           KPE  L  +D     K+ DFG        FA+ +            Y APEV+    Y+ 
Sbjct: 133 KPENIL--LDKNGHIKITDFG--------FAKYVPDVTYTLCGTPDYIAPEVVSTKPYNK 182

Query: 175 SVDMWSFACTAFELATG 191
           S+D WSF    +E+  G
Sbjct: 183 SIDWWSFGILIYEMLAG 199

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           +   L+YLH    II+ DLKPENILL
Sbjct: 115 VCLALEYLH-SKDIIYRDLKPENILL 139

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILR-AGYSFSVDMW 179
           KP   L       ++ D G AC  +K   ++         Y APEV+ +   Y  S D +
Sbjct: 319 KPANILLDEHGHVRISDLGLACDFSK---KKPHASVGTHGYMAPEVLQKGVAYDSSADWF 375

Query: 180 SFACTAFELATG 191
           S  C  F+L  G
Sbjct: 376 SLGCMLFKLLRG 387

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            +L+ +  GD    L   S++       +R     I+ GL+++H    +++ DLKP NIL
Sbjct: 269 FILDLMNGGDLHYHL---SQHGVFSEADMRFYAAEIILGLEHMH-NRFVVYRDLKPANIL 324

Query: 59  L 59
           L
Sbjct: 325 L 325

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           +   LD+LH  LGII+ DLKPENILL
Sbjct: 135 LALALDHLH-SLGIIYRDLKPENILL 159

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           KPE  L   +   K+ DFG   + +    ++      T +Y APEV+ R G++ S D WS
Sbjct: 153 KPENILLDEEGHIKLTDFG-LSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWS 211

Query: 181 FACTAFELATG 191
           F    FE+ TG
Sbjct: 212 FGVLMFEMLTG 222

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I   L +LH + GII+ DLKPENI+L
Sbjct: 130 ISMALGHLH-QKGIIYRDLKPENIML 154

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           KPE  +       K+ DFG  C+ +            T +Y APE+++R+G++ +VD WS
Sbjct: 148 KPENIMLNHQGHVKLTDFG-LCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWS 206

Query: 181 FACTAFELATG 191
                +++ TG
Sbjct: 207 LGALMYDMLTG 217

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 1   MVLEFLGDSLL-RLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV+E+ G  L   +++  R   +  ++ R   + I+  ++Y HR   I+H DLKPEN+LL
Sbjct: 86  MVIEYAGGELFDYIVEKKR---MTEDEGRRFFQQIICAIEYCHR-HKIVHRDLKPENLLL 141

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 51/176 (28%)

Query: 125 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 181
           KPE  L   ++  K+ DFG  N             +  Y APEVI    Y+   VD+WS 
Sbjct: 135 KPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSC 194

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
               + +  G + F          D++ +  +        +K+                 
Sbjct: 195 GIVLYVMLVGRLPF----------DDEFIPNLF-------KKVNSC-------------- 223

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                             Y   +  +      +  ++   P +R T Q+  + PW 
Sbjct: 224 -----------------VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWF 262

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 36/176 (20%), Positives = 54/176 (30%), Gaps = 51/176 (28%)

Query: 125 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 181
           K E  L   DM  K+ DFG  N      +         Y APE+     Y    VD+WS 
Sbjct: 141 KAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSL 200

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
               + L +G + F          D  +L        ++  ++  G              
Sbjct: 201 GVILYTLVSGSLPF----------DGQNLK-------ELRERVLRG-------------- 229

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                            KYR     + +    L   L   P KR T +Q ++  W+
Sbjct: 230 -----------------KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWI 268

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +++E+   G+    L+ + R   ++  + R   + I++ + Y H+   I+H DLK EN+L
Sbjct: 91  LIMEYASGGEVFDYLVAHGR---MKEKEARSKFRQIVSAVQYCHQ-KRIVHRDLKAENLL 146

Query: 59  L 59
           L
Sbjct: 147 L 147

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G +L  ++       +   +  E+       L++ H+  GIIH D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSHQ-NGIIHRDVKPANIMI 149

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +  + G  L  +++  R   L   +   I + I + LD  H   G  H D+KPENIL+
Sbjct: 111 VDMRLINGVDLAAMLR--RQGPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILV 167

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I+  L++LH +LGII+ D+K ENILL
Sbjct: 168 IVLALEHLH-KLGIIYRDIKLENILL 192

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVIL--RAGYSFSVD 177
           K E  L   +    + DFG   +       E       T +Y AP+++    +G+  +VD
Sbjct: 186 KLENILLDSNGHVVLTDFG-LSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVD 244

Query: 178 MWSFACTAFELATG 191
            WS     +EL TG
Sbjct: 245 WWSLGVLMYELLTG 258

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I + L YLH  L I++ DLKPENILL
Sbjct: 148 IASALGYLH-SLNIVYRDLKPENILL 172

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDM 178
           KPE  L        + DFG  C+ N        T       +Y APEV+ +  Y  +VD 
Sbjct: 166 KPENILLDSQGHIVLTDFG-LCKEN--IEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDW 222

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           W      +E+  G   F       +  +      M + I
Sbjct: 223 WCLGAVLYEMLYGLPPF-------YSRNTAE---MYDNI 251

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV+E LG  L ++   +     + + V ++   +L  L+Y+H E   +H D+K  N+LL
Sbjct: 129 MVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIH-ENEYVHGDIKAANLLL 184

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E+L  GD +  +         +L++       I+ GL +LH   GI++ DLK +NIL
Sbjct: 95  FVMEYLNGGDLMYHI---QSCHKFDLSRATFYAAEIILGLQFLH-SKGIVYRDLKLDNIL 150

Query: 59  L 59
           L
Sbjct: 151 L 151

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K +  L   D   K+ DFG  C+ N     +      T  Y APE++L   Y+ SVD WS
Sbjct: 145 KLDNILLDKDGHIKIADFG-MCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWS 203

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           F    +E+  G   F         +DE+    +   I
Sbjct: 204 FGVLLYEMLIGQSPF-------HGQDEEE---LFHSI 230

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 34/176 (19%), Positives = 55/176 (31%), Gaps = 57/176 (32%)

Query: 125 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 181
           K E  +   D   K++DFG        K F     T +Y APEV++   Y    ++MWS 
Sbjct: 157 KDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWS- 215

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
                    G  L+              L     +  + P             F    +L
Sbjct: 216 --------LGVTLYT-------------L-----VFEENP-------------FC---EL 233

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           +                        ++E    +  LL   PE+R T ++ +  PW+
Sbjct: 234 EETVE-----------AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWV 278

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 28  REICKYILTGLDYLHRELGIIHTDLKPENILL 59
             I + +++ + YL     IIH D+K ENI++
Sbjct: 133 SYIFRQLVSAVGYLRL-KDIIHRDIKDENIVI 163

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 46.2 bits (109), Expect = 8e-06
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V++ LG SL  L  +   K L L  V  +   ++  ++++H +   +H D+KP+N L+
Sbjct: 80  LVMDLLGPSLEDLFNFCSRK-LSLKTVLMLADQMINRVEFVHSK-SFLHRDIKPDNFLM 136

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           I++ L+YLH    +++ D+K EN++L
Sbjct: 114 IVSALEYLH-SRDVVYRDIKLENLML 138

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K E  +   D   K+ DFG  C+        ++    T +Y APEV+    Y  +VD W 
Sbjct: 132 KLENLMLDKDGHIKITDFG-LCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 190

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
                +E+  G + F       + +D +    + ELI
Sbjct: 191 LGVVMYEMMCGRLPF-------YNQDHER---LFELI 217

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+EF+  GD +  +    + +  +  + R     I++ L +LH + GII+ DLK +N+L
Sbjct: 101 FVMEFVNGGDLMFHI---QKSRRFDEARARFYAAEIISALMFLH-DKGIIYRDLKLDNVL 156

Query: 59  L 59
           L
Sbjct: 157 L 157

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K +  L   +  CK+ DFG  C+              T  Y APE++    Y  +VD W+
Sbjct: 151 KLDNVLLDHEGHCKLADFG-MCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWA 209

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP 221
                +E+  G   F         E+ED    + E I    
Sbjct: 210 MGVLLYEMLCGHAPF-------EAENEDD---LFEAILNDE 240

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 13/80 (16%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVI------LRAG 171
           K +  L   + +C + D G A   ++   +          T++Y APEV+          
Sbjct: 140 KSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFD 199

Query: 172 YSFSVDMWSFACTAFELATG 191
               VD+W+F    +E+A  
Sbjct: 200 SYKRVDIWAFGLVLWEVARR 219

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL-------GIIHTDL 52
           ++  +    SL   ++      L+      I   I +GL +LH E+        I H DL
Sbjct: 83  LITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDL 139

Query: 53  KPENILL 59
           K +NIL+
Sbjct: 140 KSKNILV 146

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E++  GD +  +    +    +          I  GL +L    GII+ DLK +N++
Sbjct: 98  FVMEYVNGGDLMYHI---QQVGRFKEPHAVFYAAEIAIGLFFLQ-SKGIIYRDLKLDNVM 153

Query: 59  L 59
           L
Sbjct: 154 L 154

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 19/99 (19%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR------QYRAPEVILRAGYSFSVDM 178
           K +  +   +   K+ DFG  C+ N    + + T+       Y APE+I    Y  SVD 
Sbjct: 148 KLDNVMLDSEGHIKIADFG-MCKEN--IWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDW 204

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           W+F    +E+  G   F         EDED    + + I
Sbjct: 205 WAFGVLLYEMLAGQAPF-------EGEDEDE---LFQSI 233

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV+E LG SL  L  +   K   L  V  +   +++ ++Y+H     IH D+KP+N L+
Sbjct: 82  MVMELLGPSLEDLFNFCSRK-FSLKTVLLLADQMISRIEYIH-SKNFIHRDVKPDNFLM 138

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MVLE LG SL  L          L  V  I   +++ ++Y+H +  +I+ D+KPEN L+
Sbjct: 82  MVLELLGPSLEDLFDLCDRT-FSLKTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLI 138

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 37/176 (21%), Positives = 59/176 (33%), Gaps = 57/176 (32%)

Query: 125 KPERCL-DGIDMRCKVVDFG-NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 181
           K E  L D      K++DFG  A   +  + +   TR Y  PE I    Y   S  +WS 
Sbjct: 176 KDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSL 235

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
                    G +L+                 M  + G +P             F+     
Sbjct: 236 ---------GILLYD----------------M--VCGDIP-------------FE---HD 252

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           + I R + +        + R S ++ +     +   L   P  RPT ++   HPW+
Sbjct: 253 EEIIRGQVFF-------RQRVS-SECQ---HLIRWCLALRPSDRPTFEEIQNHPWM 297

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           +L  + + H   G++H D+K ENIL+
Sbjct: 158 VLEAVRHCHN-CGVLHRDIKDENILI 182

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 28  REICKY---ILTGLDYLHRELGIIHTDLKPENILL 59
            +  ++   ++ G+ YLH  +GI H D+KPEN+LL
Sbjct: 105 PDAQRFFHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 26/179 (14%), Positives = 42/179 (23%), Gaps = 53/179 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTR----QYRAPEVILRAGYS-FSVDM 178
           KPE  L       K+ DFG A        E +         Y APE++ R  +    VD+
Sbjct: 132 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 191

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS       +  G++ +           +       E                  +    
Sbjct: 192 WSCGIVLTAMLAGELPW-----------DQPSDSCQEY-----SDWKEKKTYLNPWKKID 235

Query: 239 GDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                 + +                              +L   P  R T     +  W
Sbjct: 236 SAPLALLHK------------------------------ILVENPSARITIPDIKKDRW 264

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V++ LG SL  L+     K   +  V    K +L  +  +H E  +++ D+KP+N L+
Sbjct: 83  LVIDLLGPSLEDLLDLCGRK-FSVKTVAMAAKQMLARVQSIH-EKSLVYRDIKPDNFLI 139

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 28  REICKY---ILTGLDYLHRELGIIHTDLKPENILL 59
            +  ++   ++ G+ YLH  +GI H D+KPEN+LL
Sbjct: 105 PDAQRFFHQLMAGVVYLHG-IGITHRDIKPENLLL 138

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 31/207 (14%), Positives = 50/207 (24%), Gaps = 55/207 (26%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEI-QTR----QYRAPEVILRAGYS-FSVDM 178
           KPE  L       K+ DFG A        E +         Y APE++ R  +    VD+
Sbjct: 132 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 191

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS       +  G++ +           +       E                  +    
Sbjct: 192 WSCGIVLTAMLAGELPW-----------DQPSDSCQEY-----SDWKEKKTYLNPWKKID 235

Query: 239 GDLKR-IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                 + +                              +L   P  R T     +  W 
Sbjct: 236 SAPLALLHK------------------------------ILVENPSARITIPDIKKDRWY 265

Query: 298 --SLRNSTRDETKNKSNVEKVDVGMSK 322
              L+   +        V +   G SK
Sbjct: 266 NKPLKKGAKRPRVTSGGVSESPSGFSK 292

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 42/211 (19%), Positives = 66/211 (31%), Gaps = 49/211 (23%)

Query: 125 KPERCL-DG-IDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMW 179
           K E  L DG    R K+ DFG   +   + Q    + T  Y APEV+LR  Y     D+W
Sbjct: 143 KLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVW 202

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S   T + +  G   F         ED +          K  ++I         Y     
Sbjct: 203 SCGVTLYVMLVGAYPF---------EDPE----EPRDYRKTIQRILSV-----KY----- 239

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-- 297
               I      S              +       +  +    P  R +  +   H W   
Sbjct: 240 ---SIPDDIRIS-------------PECC---HLISRIFVADPATRISIPEIKTHSWFLK 280

Query: 298 SLRNSTRDETKNKSNVEKVDVGMSKLEIKVG 328
           +L     +E+   S  ++ +  M  L+  + 
Sbjct: 281 NLPADLMNESNTGSQFQEPEQPMQSLDTIMQ 311

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           +L+G+ Y H  + I H DLK EN LL
Sbjct: 125 LLSGVSYCHS-MQICHRDLKLENTLL 149

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            + E++ G +L  +IK S       ++     K I +G+ YLH  + IIH DL   N L+
Sbjct: 84  FITEYIKGGTLRGIIK-SMDSQYPWSQRVSFAKDIASGMAYLHS-MNIIHRDLNSHNCLV 141

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC-----------------RANKQFAEEIQTRQYRAPEVI 167
               CL   +    V DFG A                     K+    +    + APE+I
Sbjct: 135 NSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMI 194

Query: 168 LRAGYSFSVDMWSFACTAFELATGDM 193
               Y   VD++SF     E+     
Sbjct: 195 NGRSYDEKVDVFSFGIVLCEIIGRVN 220

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           M+++  G  L ++ + +  +      V ++   IL  L+Y+H E   +H D+K  N+LL
Sbjct: 129 MIMDRFGSDLQKIYEANAKR-FSRKTVLQLSLRILDILEYIH-EHEYVHGDIKASNLLL 185

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV+E++ G  L+ L+       +     R     ++  LD +H  +G IH D+KP+N+LL
Sbjct: 146 MVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALDAIH-SMGFIHRDVKPDNMLL 201

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 125 KPERCLDGIDMR--CKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAG----YSF 174
           KP+  L  +D     K+ DFG   + NK+          T  Y +PEV+   G    Y  
Sbjct: 195 KPDNML--LDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGR 252

Query: 175 SVDMWSFACTAFELATG 191
             D WS     +E+  G
Sbjct: 253 ECDWWSVGVFLYEMLVG 269

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 28  REICKY---ILTGLDYLHRELGIIHTDLKPENILL 59
            E  +    IL+ +DY HR   ++H DLKPEN+LL
Sbjct: 111 MEARRLFQQILSAVDYCHR-HMVVHRDLKPENVLL 144

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 38/178 (21%), Positives = 59/178 (33%), Gaps = 55/178 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYS-FSVDMW 179
           KPE  L    M  K+ DFG +        E ++T      Y APEVI    Y+   VD+W
Sbjct: 138 KPENVLLDAHMNAKIADFGLS--NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIW 195

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     + L  G + F          D++H+  +        +KI  G      +     
Sbjct: 196 SCGVILYALLCGTLPF----------DDEHVPTLF-------KKIRGG-----VF----- 228

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                  +  +            +          L+ +L   P KR T +   +H W 
Sbjct: 229 ------YIPEY-----------LN-RSVA---TLLMHMLQVDPLKRATIKDIREHEWF 265

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           K +  +   +   K+ DFG  C+ N       +    T  Y APE+I    Y  SVD W+
Sbjct: 469 KLDNVMLDSEGHIKIADFG-MCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA 527

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI 217
           F    +E+  G   F         EDED    + + I
Sbjct: 528 FGVLLYEMLAGQAPF-------EGEDEDE---LFQSI 554

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 1   MVLEFL--GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E++  GD +  + +  R+K             I  GL +L    GII+ DLK +N++
Sbjct: 419 FVMEYVNGGDLMYHIQQVGRFK---EPHAVFYAAEIAIGLFFLQ-SKGIIYRDLKLDNVM 474

Query: 59  L 59
           L
Sbjct: 475 L 475

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL-------GIIHTDL 52
           ++ ++    SL   +K      L+   + ++    ++GL +LH E+        I H DL
Sbjct: 112 LITDYHENGSLYDYLKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDL 168

Query: 53  KPENILL 59
           K +NIL+
Sbjct: 169 KSKNILV 175

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG------ 171
           K +  L   +  C + D G A +      E          T++Y  PEV+  +       
Sbjct: 169 KSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQ 228

Query: 172 YSFSVDMWSFACTAFELATG 191
                DM+SF    +E+A  
Sbjct: 229 SYIMADMYSFGLILWEVARR 248

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 16/26 (61%), Positives = 21/26 (80%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           IL+G+DY HR   ++H DLKPEN+LL
Sbjct: 125 ILSGVDYCHR-HMVVHRDLKPENVLL 149

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 55/178 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR----QYRAPEVILRAGYS-FSVDMW 179
           KPE  L    M  K+ DFG +        E ++T      Y APEVI    Y+   VD+W
Sbjct: 143 KPENVLLDAHMNAKIADFGLS--NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIW 200

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     + L  G + F          D+DH+  +        +KI  G            
Sbjct: 201 SSGVILYALLCGTLPF----------DDDHVPTLF-------KKICDG------------ 231

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                               +   +         L  +L   P KR T +   +H W 
Sbjct: 232 -------------------IFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWF 270

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL--------GIIHTD 51
           +V+E+    SL + +        +      +   +  GL YLH EL         I H D
Sbjct: 89  LVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRD 145

Query: 52  LKPENILL 59
           L   N+L+
Sbjct: 146 LNSRNVLV 153

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 35/176 (19%), Positives = 54/176 (30%), Gaps = 57/176 (32%)

Query: 125 KPERCL-DGIDMRCKVVDFG-NACRANKQFAEEIQTRQYRAPEVILRAGYS-FSVDMWSF 181
           K E  L D      K++DFG  A   ++ + +   TR Y  PE I R  Y      +WS 
Sbjct: 166 KDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSL 225

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
                    G +L+                 M  + G +P             F+     
Sbjct: 226 ---------GILLYD----------------M--VCGDIP-------------FE---RD 242

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           + I   +              S  D       +   L   P  RP+ ++ L  PW+
Sbjct: 243 QEILEAELHF-------PAHVS-PDCC---ALIRRCLAPKPSSRPSLEEILLDPWM 287

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 34  ILTGLDYLHRELGIIHTDLKPENILL 59
           ++  + + H   G++H D+K ENIL+
Sbjct: 148 VVAAIQHCHS-RGVVHRDIKDENILI 172

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAG------ 171
           K +  L   +  C + D G A R +               T++Y APEV+  +       
Sbjct: 174 KSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFE 233

Query: 172 YSFSVDMWSFACTAFELATG 191
                D+++     +E+A  
Sbjct: 234 SFKRADIYAMGLVFWEIARR 253

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL-------GIIHTDL 52
           +V ++    SL   +       + +  + ++     +GL +LH E+        I H DL
Sbjct: 117 LVSDYHEHGSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDL 173

Query: 53  KPENILL 59
           K +NIL+
Sbjct: 174 KSKNILV 180

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 134 DMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVI-----LRAGYSFSVDMWSFAC 183
           ++   + DFG A +     +         TR+Y APEV+      +      +DM++   
Sbjct: 167 NLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGL 226

Query: 184 TAFELATG 191
             +ELA+ 
Sbjct: 227 VLWELASR 234

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E++ G SL  +                  + +    D  HR  G+  +   P  + +
Sbjct: 108 VVAEWIRGGSLQEVAD----TSPSPVGAIRAMQSLAAAADAAHRA-GVALSIDHPSRVRV 162

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +  EF G  L ++      K   L   + I   +   L      L   H DL   N+LL
Sbjct: 141 LEFEFGGIDLEQMRT----KLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLL 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.98
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.98
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.98
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.98
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.98
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.98
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.98
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.98
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.98
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.98
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.98
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.98
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.98
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.98
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.98
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.98
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
3bhy_A	283	Death-associated protein kinase 3; death associate	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.97
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.97
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.96
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.96
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.96
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.96
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.96
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.96
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.96
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.96
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.96
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.96
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.96
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.96
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.96
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.96
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.96
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.96
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.96
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.96
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.96
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.96
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.95
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.95
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.95
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.95
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.95
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.93
3uqc_A	286	Probable conserved transmembrane protein; structur	99.9
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.85
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.62
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.35
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.15
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.68
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.98
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.69
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.39
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.23
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.61
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	96.14
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	95.28
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	94.48
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.07
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	90.79
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	86.8
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	86.28
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	85.88
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	83.67
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.6
3ats_A	357	Putative uncharacterized protein; hypothetical pro	81.82
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	81.76
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	81.57
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	81.48

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=6.4e-43  Score=318.25  Aligned_cols=183  Identities=28%  Similarity=0.434  Sum_probs=153.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||+|||++ ||+||||||+|||+                    
T Consensus       109 ivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDlKPeNILl--------------------  165 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILL--------------------  165 (311)
T ss_dssp             EEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE--------------------
T ss_pred             EEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHeEE--------------------
Confidence            689999 99999999876  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----ccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~  154 (329)
                                                                          +....+||+|||+|....     .....
T Consensus       166 ----------------------------------------------------~~~g~vKl~DFGla~~~~~~~~~~~~~~  193 (311)
T 4aw0_A          166 ----------------------------------------------------NEDMHIQITDFGTAKVLSPESKQARANS  193 (311)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTTTCCCBCC
T ss_pred             ----------------------------------------------------cCCCCEEEEEcCCceecCCCCCcccccC
Confidence                                                                334679999999996543     13345


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.      +....+..|.                    
T Consensus       194 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~------~~~~~~~~i~--------------------  247 (311)
T 4aw0_A          194 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG------NEGLIFAKII--------------------  247 (311)
T ss_dssp             CCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH--------------------
T ss_pred             cccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHH--------------------
Confidence            68999999999999999999999999999999999999999765      2333333332                    


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHH------HhcCCCcCCCCCChhh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------CLQHPWLSLRNSTRDE  306 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~e------ll~hpwf~~~~~~~~~  306 (329)
                                            ...+.++...+.++.+||++||+.||++|+|+.|      |++||||++++|..-.
T Consensus       248 ----------------------~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~l~  303 (311)
T 4aw0_A          248 ----------------------KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLH  303 (311)
T ss_dssp             ----------------------HTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTGG
T ss_pred             ----------------------cCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCCHHHhc
Confidence                                  2222344445678999999999999999999988      5899999999987543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.9e-42  Score=319.64  Aligned_cols=180  Identities=28%  Similarity=0.497  Sum_probs=148.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...   .+++..++.++.||+.||+|||++ |||||||||+|||++                   
T Consensus       148 ivmEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~-------------------  204 (346)
T 4fih_A          148 VVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILLT-------------------  204 (346)
T ss_dssp             EEECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEC-------------------
Confidence            699999 99999999764   499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....+||+|||+|.....   .....+
T Consensus       205 -----------------------------------------------------~~g~vKl~DFGla~~~~~~~~~~~~~~  231 (346)
T 4fih_A          205 -----------------------------------------------------HDGRVKLSDFGFCAQVSKEVPRRKSLV  231 (346)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSSSCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEecCcCceecCCCCCcccccc
Confidence                                                                 345799999999966543   345678


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+.+|+.++|||||||++|+|++|.+||.+.      +....+..|.....+.                
T Consensus       232 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~------~~~~~~~~i~~~~~~~----------------  289 (346)
T 4fih_A          232 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE------PPLKAMKMIRDNLPPR----------------  289 (346)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHHSSCCC----------------
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHcCCCCC----------------
Confidence            999999999999999999999999999999999999999765      3344444332210000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                             .......+.++.+||.+||+.||++|||++|+++||||+...
T Consensus       290 -----------------------~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          290 -----------------------LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  331 (346)
T ss_dssp             -----------------------CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             -----------------------CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCC
Confidence                                   001123357899999999999999999999999999998654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2e-42  Score=314.59  Aligned_cols=182  Identities=30%  Similarity=0.439  Sum_probs=151.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||+|||++ ||+||||||+|||+                    
T Consensus       103 ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl--------------------  159 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSL-GIIYRDLKPENILL--------------------  159 (304)
T ss_dssp             EEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEE--------------------
T ss_pred             EEEEcCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHeEE--------------------
Confidence            699999 99999999876  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....+||+|||+|....   ......+
T Consensus       160 ----------------------------------------------------~~~g~vKl~DFGla~~~~~~~~~~~~~~  187 (304)
T 3ubd_A          160 ----------------------------------------------------DEEGHIKLTDFGLSKESIDHEKKAYSFC  187 (304)
T ss_dssp             ----------------------------------------------------CTTSCEEEESSEEEEC-----CCCCSCC
T ss_pred             ----------------------------------------------------cCCCCEEecccccceeccCCCccccccc
Confidence                                                                334679999999996543   2345678


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++||||+||++|+|++|.+||.+.      +....+..|.+                     
T Consensus       188 GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~------~~~~~~~~i~~---------------------  240 (304)
T 3ubd_A          188 GTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK------DRKETMTMILK---------------------  240 (304)
T ss_dssp             CCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH---------------------
T ss_pred             cCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc------CHHHHHHHHHc---------------------
Confidence            999999999999999999999999999999999999999865      33333333321                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~  305 (329)
                                           ....++...+.++.+||++||+.||++|||+     +|+++||||+.++|..-
T Consensus       241 ---------------------~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l  293 (304)
T 3ubd_A          241 ---------------------AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKL  293 (304)
T ss_dssp             ---------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             ---------------------CCCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCCCHHHH
Confidence                                 1222344456789999999999999999984     79999999999887543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=5e-42  Score=307.90  Aligned_cols=176  Identities=25%  Similarity=0.427  Sum_probs=137.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||||++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++                    
T Consensus        90 ivmEy~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~IiHRDiKP~NILl~--------------------  146 (275)
T 3hyh_A           90 MVIEYAGNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRH-KIVHRDLKPENLLLD--------------------  146 (275)
T ss_dssp             EEEECCCEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEEC--------------------
T ss_pred             EEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCChHHeEEC--------------------
Confidence            68999988999999875  4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....+||+|||+|.....  .....+||
T Consensus       147 ----------------------------------------------------~~~~vkl~DFGla~~~~~~~~~~~~~GT  174 (275)
T 3hyh_A          147 ----------------------------------------------------EHLNVKIADFGLSNIMTDGNFLKTSCGS  174 (275)
T ss_dssp             ----------------------------------------------------TTCCEEECCSSCC---------------
T ss_pred             ----------------------------------------------------CCCCEEEeecCCCeecCCCCccCCeeEC
Confidence                                                                345799999999965443  33456899


Q ss_pred             CCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +.|+|||++.+..| +.++||||+||++|+|++|..||.+.      +.......+.                       
T Consensus       175 ~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~------~~~~~~~~i~-----------------------  225 (275)
T 3hyh_A          175 PNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE------SIPVLFKNIS-----------------------  225 (275)
T ss_dssp             CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH-----------------------
T ss_pred             cccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHH-----------------------
Confidence            99999999998876 68999999999999999999999764      2222222221                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                         .....++...+.++.+||++||+.||++|||++|+++||||+.
T Consensus       226 -------------------~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~  268 (275)
T 3hyh_A          226 -------------------NGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV  268 (275)
T ss_dssp             -------------------HTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred             -------------------cCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCccccc
Confidence                               1222234445678999999999999999999999999999963

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=5.5e-42  Score=319.89  Aligned_cols=219  Identities=28%  Similarity=0.410  Sum_probs=155.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.     .+++..++.++.||+.||+|||++ ||+||||||+|||++..                 
T Consensus        97 lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~-gIiHRDiKPeNiLl~~~-----------------  153 (361)
T 4f9c_A           97 IAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF-GIVHRDVKPSNFLYNRR-----------------  153 (361)
T ss_dssp             EEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEETT-----------------
T ss_pred             EEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC-CeEeCcCCHHHeEEeCC-----------------
Confidence            689999 899999884     289999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                            ...++|+|||+|.....         
T Consensus       154 ------------------------------------------------------~~~~kl~DFGla~~~~~~~~~~~~~~  179 (361)
T 4f9c_A          154 ------------------------------------------------------LKKYALVDFGLAQGTHDTKIELLKFV  179 (361)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECTTCSCGGGGGC
T ss_pred             ------------------------------------------------------CCeEEECcCCCCcccCCccccccccc
Confidence                                                                  24799999999854321         


Q ss_pred             ----------------------ccccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCch
Q 020248          151 ----------------------QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDE  207 (329)
Q Consensus       151 ----------------------~~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~  207 (329)
                                            .....+||+.|+|||++.+. .|+.++||||+||++|+|++|+.||....     ++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~-----~~~  254 (361)
T 4f9c_A          180 QSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS-----DDL  254 (361)
T ss_dssp             --------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHH
T ss_pred             cccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC-----CHH
Confidence                                  12345799999999999886 48999999999999999999999997654     678


Q ss_pred             HHHHHHHHHhCCCcHHHHhcCCCCccccCccC---ch----hhhcccc--ccchhHHH---hhhcCCChhhHHHHHHHHh
Q 020248          208 DHLALMMELIGKMPRKIAIGGAQSKDYFDRHG---DL----KRIRRLK--FWSLDRLL---VDKYRFSETDAREFAEFLV  275 (329)
Q Consensus       208 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~---~~----~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~dll~  275 (329)
                      +++..|..++|..+..................   ..    .......  ........   ..........+.++.|||+
T Consensus       255 ~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~  334 (361)
T 4f9c_A          255 TALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLD  334 (361)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHH
Confidence            89999999999755433221111110000000   00    0000000  00000000   0001122344678999999


Q ss_pred             hccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          276 PLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       276 ~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      +||++||++|+||+|+|+||||++++
T Consensus       335 ~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          335 KLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             HHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             HHCcCChhHCcCHHHHhcCcccCCCC
Confidence            99999999999999999999999864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.8e-42  Score=318.89  Aligned_cols=180  Identities=23%  Similarity=0.409  Sum_probs=149.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||++                   
T Consensus       100 iVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~-------------------  159 (350)
T 4b9d_A          100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR-KILHRDIKSQNIFLT-------------------  159 (350)
T ss_dssp             EEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCEETTCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHHHEEEC-------------------
Confidence            699999 99999999876656689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....+||+|||+|......   ....+
T Consensus       160 -----------------------------------------------------~~g~vKl~DFGla~~~~~~~~~~~~~~  186 (350)
T 4b9d_A          160 -----------------------------------------------------KDGTVQLGDFGIARVLNSTVELARACI  186 (350)
T ss_dssp             -----------------------------------------------------TTCCEEECSTTEESCCCHHHHHHHHHH
T ss_pred             -----------------------------------------------------CCCCEEEcccccceeecCCcccccccC
Confidence                                                                 3457999999999765532   24457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.      +..+.+..+..  +.+|               
T Consensus       187 GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~------~~~~~~~~i~~--~~~~---------------  243 (350)
T 4b9d_A          187 GTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG------SMKNLVLKIIS--GSFP---------------  243 (350)
T ss_dssp             SCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHH--TCCC---------------
T ss_pred             CCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHc--CCCC---------------
Confidence            999999999999999999999999999999999999999865      33334333322  1111               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                              ..+...+.++.+||.+||+.||++|||++|+|+||||+..
T Consensus       244 ------------------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  283 (350)
T 4b9d_A          244 ------------------------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR  283 (350)
T ss_dssp             ------------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             ------------------------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcC
Confidence                                    1223346789999999999999999999999999999754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=321.74  Aligned_cols=180  Identities=29%  Similarity=0.521  Sum_probs=147.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...   .+++..++.++.||+.||+|||++ |||||||||+|||++                   
T Consensus       225 iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~-~IiHRDiKp~NILl~-------------------  281 (423)
T 4fie_A          225 VVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQ-GVIHRDIKSDSILLT-------------------  281 (423)
T ss_dssp             EEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSTTTEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHC-CeecccCCHHHEEEc-------------------
Confidence            699999 99999999764   499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....+||+|||+|.....   .....+
T Consensus       282 -----------------------------------------------------~~g~vKl~DFGla~~~~~~~~~~~~~~  308 (423)
T 4fie_A          282 -----------------------------------------------------HDGRVKLSDFGFCAQVSKEVPRRKSLV  308 (423)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSSCCCBCCCE
T ss_pred             -----------------------------------------------------CCCCEEEecCccceECCCCCccccccc
Confidence                                                                 345799999999965543   345668


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.      +....+..|...   .+.              
T Consensus       309 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~------~~~~~~~~i~~~---~~~--------------  365 (423)
T 4fie_A          309 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE------PPLKAMKMIRDN---LPP--------------  365 (423)
T ss_dssp             ECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHHS---CCC--------------
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHcC---CCC--------------
Confidence            999999999999999999999999999999999999999765      334444433221   000              


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                            ........+.++.+||.+||+.||++|+|++|+|+||||+...
T Consensus       366 ----------------------~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          366 ----------------------RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  408 (423)
T ss_dssp             ----------------------CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             ----------------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCC
Confidence                                  0001223357899999999999999999999999999998654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-41  Score=307.68  Aligned_cols=179  Identities=26%  Similarity=0.415  Sum_probs=141.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||++ |  |+||||||+|||+..                
T Consensus       106 lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~----------------  166 (290)
T 3fpq_A          106 LVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG----------------  166 (290)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESS----------------
T ss_pred             EEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEEC----------------
Confidence            589999 99999999876  4599999999999999999999995 8  999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~  156 (329)
                                                                             ....+||+|||+|..... .....+
T Consensus       167 -------------------------------------------------------~~g~vKl~DFGla~~~~~~~~~~~~  191 (290)
T 3fpq_A          167 -------------------------------------------------------PTGSVKIGDLGLATLKRASFAKAVI  191 (290)
T ss_dssp             -------------------------------------------------------TTSCEEECCTTGGGGCCTTSBEESC
T ss_pred             -------------------------------------------------------CCCCEEEEeCcCCEeCCCCccCCcc
Confidence                                                                   135799999999965443 344568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+ +|+.++|||||||++|+|++|..||.+.      .....+...+. .+..|..             
T Consensus       192 GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~------~~~~~~~~~i~-~~~~~~~-------------  250 (290)
T 3fpq_A          192 GTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC------QNAAQIYRRVT-SGVKPAS-------------  250 (290)
T ss_dssp             SSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC------SSHHHHHHHHT-TTCCCGG-------------
T ss_pred             cCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC------CcHHHHHHHHH-cCCCCCC-------------
Confidence            9999999998865 6999999999999999999999999765      22222222111 0111110             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                               .+...+.++.+||.+||+.||++|||++|+++||||++
T Consensus       251 -------------------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          251 -------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             -------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             -------------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence                                     11223457899999999999999999999999999975

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=321.07  Aligned_cols=211  Identities=29%  Similarity=0.477  Sum_probs=164.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+++...  +.+++..++.+++||+.||.|||++ |||||||||+|||++                    
T Consensus       136 ivmE~~~g~L~~~i~~~--~~l~~~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NIl~~--------------------  192 (398)
T 4b99_A          136 VVLDLMESDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKYMHSA-QVIHRDLKPSNLLVN--------------------  192 (398)
T ss_dssp             EEEECCSEEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC--------------------
T ss_pred             EEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-cCcCCCcCccccccC--------------------
Confidence            68999988899999765  4699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-------cccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-------KQFA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-------~~~~  153 (329)
                                                                          ....+||+|||+|....       ....
T Consensus       193 ----------------------------------------------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~  220 (398)
T 4b99_A          193 ----------------------------------------------------ENCELKIGDFGMARGLCTSPAEHQYFMT  220 (398)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCBCC-------CCCCC
T ss_pred             ----------------------------------------------------CCCCEEEeecceeeecccCccccccccc
Confidence                                                                34679999999996542       2344


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..+||+.|+|||++.+. .|+.++||||+||++|+|++|++||.+.      +..+++..|....|.++...+.......
T Consensus       221 ~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~------~~~~~l~~I~~~~g~p~~~~~~~~~~~~  294 (398)
T 4b99_A          221 EYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK------NYVHQLQLIMMVLGTPSPAVIQAVGAER  294 (398)
T ss_dssp             SSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS------SHHHHHHHHHHHHCCCCGGGTC-----C
T ss_pred             cceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC------CHHHHHHHHHHhcCCCChHHhhhhhhhh
Confidence            56899999999999886 5799999999999999999999999877      6888999999999998876543221110


Q ss_pred             --cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          233 --DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                        .+......      .....++.+.       ...+.++.|||.+||++||++|+||.|+|+||||+....+.+
T Consensus       295 ~~~~~~~~~~------~~~~~~~~~~-------~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~p~~  356 (398)
T 4b99_A          295 VRAYIQSLPP------RQPVPWETVY-------PGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDD  356 (398)
T ss_dssp             HHHHHHSSCC------CCCCCHHHHS-------TTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCCGGG
T ss_pred             hhhhhhcCCC------cCCCCHHHhC-------CCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCCCcc
Confidence              01000000      0001112221       223568999999999999999999999999999998765444

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=5.3e-41  Score=308.99  Aligned_cols=184  Identities=27%  Similarity=0.340  Sum_probs=146.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||+|||++ |||||||||+|||++..                 
T Consensus       127 ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~-~IiHRDlKp~NILl~~~-----------------  186 (336)
T 4g3f_A          127 IFMELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTR-RILHGDVKADNVLLSSD-----------------  186 (336)
T ss_dssp             EEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEECTT-----------------
T ss_pred             EEEeccCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecccCHHHEEEeCC-----------------
Confidence            689999 99999999876  4599999999999999999999995 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--------Q  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--------~  151 (329)
                                                                            ...+||+|||+|.....        .
T Consensus       187 ------------------------------------------------------g~~vKl~DFGla~~~~~~~~~~~~~~  212 (336)
T 4g3f_A          187 ------------------------------------------------------GSRAALCDFGHALCLQPDGLGKSLLT  212 (336)
T ss_dssp             ------------------------------------------------------SCCEEECCCTTCEEC-----------
T ss_pred             ------------------------------------------------------CCEEEEeeCCCCeEccCCCcccceec
Confidence                                                                  12699999999965432        1


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....+||+.|+|||++.+.+|+.++|||||||++|+|++|.+||.+..      ....+..|..  +++|          
T Consensus       213 ~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~------~~~~~~~i~~--~~~~----------  274 (336)
T 4g3f_A          213 GDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF------RGPLCLKIAS--EPPP----------  274 (336)
T ss_dssp             -CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC------CSCCHHHHHH--SCCG----------
T ss_pred             CCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC------HHHHHHHHHc--CCCC----------
Confidence            223479999999999999999999999999999999999999997653      1122222211  1110          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH-------------hcCCCcC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC-------------LQHPWLS  298 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el-------------l~hpwf~  298 (329)
                                                 ....+...+..+.+||.+||+.||++|||+.|+             ++|||+.
T Consensus       275 ---------------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~  327 (336)
T 4g3f_A          275 ---------------------------IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKG  327 (336)
T ss_dssp             ---------------------------GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSS
T ss_pred             ---------------------------chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcC
Confidence                                       001234457789999999999999999999997             5799998


Q ss_pred             CCCCC
Q 020248          299 LRNST  303 (329)
Q Consensus       299 ~~~~~  303 (329)
                      ....+
T Consensus       328 ~~~~P  332 (336)
T 4g3f_A          328 EYKEP  332 (336)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            87644

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=2.3e-39  Score=304.39  Aligned_cols=276  Identities=46%  Similarity=0.826  Sum_probs=203.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||++++|.+.+.......+++..++.++.||+.||.|||+++||+||||||+||++...........  +.......
T Consensus       122 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~--~~~~~~~~  199 (397)
T 1wak_A          122 MVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLA--AEATEWQR  199 (397)
T ss_dssp             EEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHH--HHHC----
T ss_pred             EEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhh--hhhHHHhh
Confidence            5899998888888877655679999999999999999999998339999999999999943210000000  00000000


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                      .......+.                    .........+..... +..........++|+|||.+...........||+.
T Consensus       200 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~  258 (397)
T 1wak_A          200 SGAPPPSGS--------------------AVSTAPATAGNFLVN-PLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQ  258 (397)
T ss_dssp             -------------------------------------CCTTSCC-TTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGG
T ss_pred             cCCCCCCCC--------------------ccccCCccccccccc-ccccccccccceEeccccccccccccCccCCCCCc
Confidence            000000000                    000000000000000 00111122347999999999877776677789999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD  240 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  240 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||..............+..+.+.+|.+|..++........++...+.
T Consensus       259 y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  338 (397)
T 1wak_A          259 YRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGD  338 (397)
T ss_dssp             GCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSS
T ss_pred             ccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccc
Confidence            99999999999999999999999999999999999887666555678899999999999999999888888888888887


Q ss_pred             hhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      .........+...+.+......+...+..+.+||.+||++||++|||++|+|+||||+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          339 LKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             BSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             cccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence            77766666677777777888888999999999999999999999999999999999973

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=6.7e-39  Score=299.20  Aligned_cols=237  Identities=43%  Similarity=0.833  Sum_probs=199.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||++|++|.+++.......++...+..++.||+.||.|||+++||+||||||+||++.....                
T Consensus       107 lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~----------------  170 (373)
T 1q8y_A          107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDS----------------  170 (373)
T ss_dssp             EEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEET----------------
T ss_pred             EEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCC----------------
Confidence            5899999999999998665679999999999999999999998339999999999999943210                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                        ......++|+|||.+...........+|+.
T Consensus       171 --------------------------------------------------~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~  200 (373)
T 1q8y_A          171 --------------------------------------------------PENLIQIKIADLGNACWYDEHYTNSIQTRE  200 (373)
T ss_dssp             --------------------------------------------------TTTEEEEEECCCTTCEETTBCCCSCCSCGG
T ss_pred             --------------------------------------------------CcCcceEEEcccccccccCCCCCCCCCCcc
Confidence                                                              011347899999999877766667789999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD  240 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  240 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||..............+..+.+.+|.+|..+.........++...+.
T Consensus       201 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  280 (373)
T 1q8y_A          201 YRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGL  280 (373)
T ss_dssp             GCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--C
T ss_pred             ccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcch
Confidence            99999999999999999999999999999999999887666566678899999999999999999988888888888887


Q ss_pred             hhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      .........+............+...+..+.+||.+||++||++|||++|+++||||+.....
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  343 (373)
T 1q8y_A          281 LRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGM  343 (373)
T ss_dssp             BSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             hcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccCc
Confidence            777777777788888888888999999999999999999999999999999999999976433

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=5e-39  Score=292.45  Aligned_cols=186  Identities=22%  Similarity=0.336  Sum_probs=132.9

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||| |++|.+++..... ...+...++.++.||+.||+|||++ ||+||||||+|||++                  
T Consensus        92 ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~-~IiHRDlKp~NILl~------------------  152 (299)
T 4g31_A           92 IQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK-GLMHRDLKPSNIFFT------------------  152 (299)
T ss_dssp             EEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC------------------
T ss_pred             EEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC-cCccccCcHHHeEEC------------------
Confidence            589999 9999999986532 1244566889999999999999995 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--------  150 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--------  150 (329)
                                                                            ....+||+|||+|.....        
T Consensus       153 ------------------------------------------------------~~~~vKl~DFGla~~~~~~~~~~~~~  178 (299)
T 4g31_A          153 ------------------------------------------------------MDDVVKVGDFGLVTAMDQDEEEQTVL  178 (299)
T ss_dssp             ------------------------------------------------------TTCCEEECCCCCC-------------
T ss_pred             ------------------------------------------------------CCCcEEEccCccceecCCCccccccc
Confidence                                                                  345799999999965432        


Q ss_pred             -------ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHh-CCCcH
Q 020248          151 -------QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELI-GKMPR  222 (329)
Q Consensus       151 -------~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~-g~~p~  222 (329)
                             ..+..+||+.|+|||++.+..|+.++|||||||++|||++   ||.+        ..+....+.... +.+|+
T Consensus       179 ~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~--------~~~~~~~~~~~~~~~~p~  247 (299)
T 4g31_A          179 TPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST--------QMERVRTLTDVRNLKFPP  247 (299)
T ss_dssp             -------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS--------HHHHHHHHHHHHTTCCCH
T ss_pred             cccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC--------ccHHHHHHHHHhcCCCCC
Confidence                   1234579999999999999999999999999999999995   6643        223333333222 12221


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      .+                                       ......+.+||++||+.||++|||+.|+++||||++.++
T Consensus       248 ~~---------------------------------------~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~~~  288 (299)
T 4g31_A          248 LF---------------------------------------TQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDLDF  288 (299)
T ss_dssp             HH---------------------------------------HHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC--
T ss_pred             CC---------------------------------------cccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCCCC
Confidence            11                                       111345678999999999999999999999999999988


Q ss_pred             Chhhhhc
Q 020248          303 TRDETKN  309 (329)
Q Consensus       303 ~~~~~~~  309 (329)
                      +.+...+
T Consensus       289 p~~~~l~  295 (299)
T 4g31_A          289 PGKTVLR  295 (299)
T ss_dssp             -------
T ss_pred             CCchHHH
Confidence            7655433

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=3.1e-38  Score=301.41  Aligned_cols=221  Identities=38%  Similarity=0.603  Sum_probs=176.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+||++...                  
T Consensus       176 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NILl~~~------------------  236 (429)
T 3kvw_A          176 MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN-RIIHCDLKPENILLKQQ------------------  236 (429)
T ss_dssp             EEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH-TEECSCCSGGGEEESST------------------
T ss_pred             EEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEccC------------------
Confidence            58999988999999987766799999999999999999999996 99999999999999431                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........+|+.
T Consensus       237 ----------------------------------------------------~~~~vkL~DFG~a~~~~~~~~~~~gt~~  264 (429)
T 3kvw_A          237 ----------------------------------------------------GRSGIKVIDFGSSCYEHQRVYTYIQSRF  264 (429)
T ss_dssp             ----------------------------------------------------TSCCEEECCCTTCEETTCCCCSSCSCGG
T ss_pred             ----------------------------------------------------CCcceEEeecccceecCCcccccCCCCC
Confidence                                                                1124899999999777766677789999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD  240 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  240 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||.+.      +..+.+..+.+.+|.++..++..+.....+++..+.
T Consensus       265 y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~------~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~  338 (429)
T 3kvw_A          265 YRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE------DEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGY  338 (429)
T ss_dssp             GCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSC
T ss_pred             ccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCC
Confidence            99999999999999999999999999999999999876      678899999999999999998777666666555442


Q ss_pred             hhhhcc-----------------------ccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          241 LKRIRR-----------------------LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       241 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ......                       .....+...      +....+..+.+||++||++||++|||++|+|+||||
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~  412 (429)
T 3kvw_A          339 PRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNA------LKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL  412 (429)
T ss_dssp             BTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHH------TTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTT
T ss_pred             cccccccccccccccccccccchhhccCCccchhhHhh------ccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhh
Confidence            211100                       000011111      122346789999999999999999999999999999


Q ss_pred             CCCCCCh
Q 020248          298 SLRNSTR  304 (329)
Q Consensus       298 ~~~~~~~  304 (329)
                      +......
T Consensus       413 ~~~~~~~  419 (429)
T 3kvw_A          413 RRRLPKP  419 (429)
T ss_dssp             C------
T ss_pred             ccCCCCC
Confidence            9865433

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1e-38  Score=315.34  Aligned_cols=186  Identities=25%  Similarity=0.374  Sum_probs=152.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||.|||++ |||||||||+|||+                    
T Consensus       269 lVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~-gIiHRDLKPeNILl--------------------  325 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILL--------------------  325 (689)
T ss_dssp             EEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCchHHeEE--------------------
Confidence            699999 99999999876  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                          +....+||+|||+|..... .....+||
T Consensus       326 ----------------------------------------------------d~~G~vKL~DFGlA~~~~~~~~~t~~GT  353 (689)
T 3v5w_A          326 ----------------------------------------------------DEHGHVRISDLGLACDFSKKKPHASVGT  353 (689)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECSSCCCCSCCSC
T ss_pred             ----------------------------------------------------eCCCCEEecccceeeecCCCCCCCccCC
Confidence                                                                3356899999999976543 44567999


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +.|+|||++.+ ..|+.++|+|||||++|+|++|.+||.+....    +...   +                        
T Consensus       354 p~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~----~~~~---i------------------------  402 (689)
T 3v5w_A          354 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK----DKHE---I------------------------  402 (689)
T ss_dssp             GGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC----CHHH---H------------------------
T ss_pred             cCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH----HHHH---H------------------------
Confidence            99999999974 57999999999999999999999999764210    1111   1                        


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~  306 (329)
                                    ...+......++...+.++.+||.+||+.||++|++     ++||++||||++++|..-.
T Consensus       403 --------------~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~  462 (689)
T 3v5w_A          403 --------------DRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVF  462 (689)
T ss_dssp             --------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHHH
T ss_pred             --------------HHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHHH
Confidence                          011122223345556788999999999999999998     7999999999999887643

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.2e-38  Score=312.15  Aligned_cols=189  Identities=26%  Similarity=0.424  Sum_probs=152.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+|||+...                 
T Consensus       231 iv~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~~-~iiHRDlKp~Nill~~~-----------------  291 (573)
T 3uto_A          231 MIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTK-----------------  291 (573)
T ss_dssp             EEEECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSS-----------------
T ss_pred             EEEeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeccCChhhccccCC-----------------
Confidence            689999 999999986532 4599999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....+||+|||++.....  .....+|
T Consensus       292 -----------------------------------------------------~~~~vKl~DFG~a~~~~~~~~~~~~~G  318 (573)
T 3uto_A          292 -----------------------------------------------------RSNELKLIDFGLTAHLDPKQSVKVTTG  318 (573)
T ss_dssp             -----------------------------------------------------SCCCEEECCCSSCEECCTTSEEEEECS
T ss_pred             -----------------------------------------------------CCCCEEEeeccceeEccCCCceeeeEE
Confidence                                                                 135799999999976543  3345689


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+.+|+.++|||||||++|+|++|..||.+.      +....+..|...-..++...             
T Consensus       319 T~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~~-------------  379 (573)
T 3uto_A          319 TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE------NDDETLRNVKSCDWNMDDSA-------------  379 (573)
T ss_dssp             SGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHTTCCCCCSGG-------------
T ss_pred             CccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc------CHHHHHHHHHhCCCCCCccc-------------
Confidence            99999999999999999999999999999999999999876      34445444432211211100             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                                               ....+.++.+||++||++||++|||+.|+|+||||+...++..
T Consensus       380 -------------------------~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~~~  422 (573)
T 3uto_A          380 -------------------------FSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGR  422 (573)
T ss_dssp             -------------------------GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCTTT
T ss_pred             -------------------------ccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCCCCCc
Confidence                                     1123568899999999999999999999999999998776543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=9e-38  Score=284.51  Aligned_cols=177  Identities=25%  Similarity=0.451  Sum_probs=136.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..+..|+.||+.||+|||++ +||||||||+|||++.                  
T Consensus       108 iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~-~IiHRDlKp~NILl~~------------------  167 (307)
T 3omv_A          108 IVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAK-NIIHRDMKSNNIFLHE------------------  167 (307)
T ss_dssp             EEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCCSSSEEEET------------------
T ss_pred             EEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCccCHHHEEECC------------------
Confidence            699999 999999997643 4599999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                            ...+||+|||+|.....     ....
T Consensus       168 ------------------------------------------------------~~~~Ki~DFGla~~~~~~~~~~~~~~  193 (307)
T 3omv_A          168 ------------------------------------------------------GLTVKIGDFGLATVKSRWSGSQQVEQ  193 (307)
T ss_dssp             ------------------------------------------------------TEEEEECCCSSCBC------------
T ss_pred             ------------------------------------------------------CCcEEEeeccCceecccCCcceeecc
Confidence                                                                  46799999999965432     2345


Q ss_pred             CCCCCCCcchHHhhcC---CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          155 EIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~---~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      .+||+.|+|||++.+.   +|+.++|||||||++|||++|..||.+.      +....+..++...-..|.         
T Consensus       194 ~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~------~~~~~~~~~~~~~~~~p~---------  258 (307)
T 3omv_A          194 PTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI------NNRDQIIFMVGRGYASPD---------  258 (307)
T ss_dssp             CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC------CCHHHHHHHHHTTCCCCC---------
T ss_pred             cccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC------ChHHHHHHHHhcCCCCCC---------
Confidence            6899999999999753   5899999999999999999999999875      233333333221111110         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                 ....+..++..+.+||.+||+.||++|||++|+++
T Consensus       259 ---------------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~  293 (307)
T 3omv_A          259 ---------------------------LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILS  293 (307)
T ss_dssp             ---------------------------STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHH
T ss_pred             ---------------------------cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                       00123445678999999999999999999998753

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=3e-37  Score=290.00  Aligned_cols=225  Identities=31%  Similarity=0.585  Sum_probs=175.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||++++|.+++.......++...++.++.||+.||.|||+ +.||+||||||+||++..                  
T Consensus       133 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~------------------  194 (382)
T 2vx3_A          133 LVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCN------------------  194 (382)
T ss_dssp             EEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESS------------------
T ss_pred             EEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEec------------------
Confidence            5899997799999998765669999999999999999999994 249999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          .....++|+|||.+...........+|+
T Consensus       195 ----------------------------------------------------~~~~~~kL~DFG~a~~~~~~~~~~~~t~  222 (382)
T 2vx3_A          195 ----------------------------------------------------PKRSAIKIVDFGSSCQLGQRIYQYIQSR  222 (382)
T ss_dssp             ----------------------------------------------------TTSCCEEECCCTTCEETTCCCCSSCSCG
T ss_pred             ----------------------------------------------------CCCCcEEEEeccCceecccccccccCCc
Confidence                                                                1134699999999987777667778999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|||||||++|+|++|..||.+.      +..+.+..+.+.+|.+|..+.........++....
T Consensus       223 ~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (382)
T 2vx3_A          223 FYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA------NEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLP  296 (382)
T ss_dssp             GGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECT
T ss_pred             cccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhcc
Confidence            999999999999999999999999999999999999876      57889999999999999988766555444443321


Q ss_pred             ch-----------hhhccccccchhHHHhh-----------hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          240 DL-----------KRIRRLKFWSLDRLLVD-----------KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       240 ~~-----------~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                      ..           ..........+...+..           .......+...+.+||++||++||++|||++|+|+||||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f  376 (382)
T 2vx3_A          297 DGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFF  376 (382)
T ss_dssp             TSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGG
T ss_pred             ccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCccc
Confidence            10           00000111112222211           011223445689999999999999999999999999999


Q ss_pred             CCCC
Q 020248          298 SLRN  301 (329)
Q Consensus       298 ~~~~  301 (329)
                      +...
T Consensus       377 ~~~~  380 (382)
T 2vx3_A          377 KKTA  380 (382)
T ss_dssp             CC--
T ss_pred             ccCC
Confidence            8754

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.4e-37  Score=286.81  Aligned_cols=243  Identities=33%  Similarity=0.565  Sum_probs=170.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||+|++|.+++.......++...++.++.||+.||+|||++ ||+||||||+||++........             
T Consensus       113 lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~~~~~~-------------  178 (360)
T 3llt_A          113 LIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM-SLTHTDLKPENILLDDPYFEKS-------------  178 (360)
T ss_dssp             EEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCTTCCEE-------------
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCcccEEEcccccccc-------------
Confidence            58999999999999987666799999999999999999999995 9999999999999943210000             


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                   .........+     +...........++|+|||.+...........||+.
T Consensus       179 -----------------------------~~~~~~~~~~-----~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~  224 (360)
T 3llt_A          179 -----------------------------LITVRRVTDG-----KKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQ  224 (360)
T ss_dssp             -----------------------------EEEEECTTTC-----CEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGG
T ss_pred             -----------------------------ccchhccccc-----ccccccccCCCCEEEEeccCceecCCCCcCccCccc
Confidence                                         0000000000     000000012457999999999777666667789999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCcc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRH  238 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~  238 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||...      +..+.+..+....+++|..+........  .++...
T Consensus       225 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  298 (360)
T 3llt_A          225 YRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH------EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKD  298 (360)
T ss_dssp             GCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETT
T ss_pred             ccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC------cHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcc
Confidence            99999999999999999999999999999999999876      5788999999999999988865433221  121111


Q ss_pred             CchhhhccccccchhHHHhhhcC---CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYR---FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                      ........ ..............   ........+.+||++||++||++|||++|+|+||||+
T Consensus       299 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          299 ELKLAWPE-NASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             TTEECTTT-TCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             cceecCcc-cccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            10000000 00000100000000   1112236889999999999999999999999999995

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.7e-37  Score=285.87  Aligned_cols=242  Identities=26%  Similarity=0.448  Sum_probs=179.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||++++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||++.....  ....          
T Consensus        99 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~-~ivH~Dlkp~NIll~~~~~--~~~~----------  165 (355)
T 2eu9_A           99 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN-QLTHTDLKPENILFVNSEF--ETLY----------  165 (355)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEESCCCE--EEEE----------
T ss_pred             EEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEecccc--cccc----------
Confidence            58999988888888876555699999999999999999999995 9999999999999933100  0000          


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                               ...............++|+|||.+...........||+.
T Consensus       166 -----------------------------------------~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~  204 (355)
T 2eu9_A          166 -----------------------------------------NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRH  204 (355)
T ss_dssp             -----------------------------------------CCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCSCGG
T ss_pred             -----------------------------------------cccccccccccCCCcEEEeecCccccccccccCCcCCCc
Confidence                                                     000000000023457999999999776666667789999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD  240 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  240 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||...      +....+..+...+|++|..+...+.....++.....
T Consensus       205 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  278 (355)
T 2eu9_A          205 YRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH------ENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLV  278 (355)
T ss_dssp             GCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEEC
T ss_pred             ccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccc
Confidence            99999999999999999999999999999999999876      577888999999999999998776655444332221


Q ss_pred             hhhhccccccchhHHH-------hhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          241 LKRIRRLKFWSLDRLL-------VDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      +.....     .....       ..........+..+.+||++||++||++|||++|+++||||+.........
T Consensus       279 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~  347 (355)
T 2eu9_A          279 WDENSS-----DGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEERSF  347 (355)
T ss_dssp             CCTTSH-----HHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCCHHHHC-
T ss_pred             cccccc-----hhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCChhhccc
Confidence            111100     00000       011122344577899999999999999999999999999999876544433

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4e-37  Score=282.73  Aligned_cols=241  Identities=29%  Similarity=0.499  Sum_probs=177.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.......++...+..++.||+.||+|||++ ||+||||||+||++......  .....        
T Consensus        94 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~~~~--~~~~~--------  162 (339)
T 1z57_A           94 IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN-KLTHTDLKPENILFVQSDYT--EAYNP--------  162 (339)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCCCEE--EEEC---------
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCHHHEEEeccccc--cccCC--------
Confidence            58999999999999887655689999999999999999999995 99999999999999432100  00000        


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                 .............++|+|||.+...........||+.
T Consensus       163 -------------------------------------------~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~  199 (339)
T 1z57_A          163 -------------------------------------------KIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRH  199 (339)
T ss_dssp             ----------------------------------------------CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGG
T ss_pred             -------------------------------------------ccccccccccCCCceEeeCcccccCccccccccCCcc
Confidence                                                       0000000011347999999999776666667788999


Q ss_pred             CcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCc
Q 020248          161 YRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD  240 (329)
Q Consensus       161 y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  240 (329)
                      |+|||++.+..++.++|||||||++|+|++|..||...      +....+..+....+++|..+.........+......
T Consensus       200 y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  273 (339)
T 1z57_A          200 YRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH------DSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLD  273 (339)
T ss_dssp             GCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS------CHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEEC
T ss_pred             ccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHhhccchhHHhhcccc
Confidence            99999999999999999999999999999999999876      577788999999999999998776654433222111


Q ss_pred             hhhhccccccchhH---HHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          241 LKRIRRLKFWSLDR---LLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       241 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      +........ ....   ............+..+.+||.+||++||++|||+.|+++||||+....
T Consensus       274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  337 (339)
T 1z57_A          274 WDEHSSAGR-YVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKK  337 (339)
T ss_dssp             CCTTSHHHH-HHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGGC
T ss_pred             ccccccccc-hhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHhc
Confidence            111000000 0000   001111234456788999999999999999999999999999997653

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-36  Score=276.79  Aligned_cols=206  Identities=31%  Similarity=0.495  Sum_probs=162.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+||+++                    
T Consensus        96 lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~~--------------------  154 (308)
T 3g33_A           96 LVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN-CIVHRDLKPENILVT--------------------  154 (308)
T ss_dssp             EEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCTTTEEEC--------------------
T ss_pred             EEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEc--------------------
Confidence            58999988999999987656699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......+|
T Consensus       155 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt  182 (308)
T 3g33_A          155 ----------------------------------------------------SGGTVKLADFGLARIYSYQMALTPVVVT  182 (308)
T ss_dssp             ----------------------------------------------------TTSCEEECSCSCTTTSTTCCCSGGGGCC
T ss_pred             ----------------------------------------------------CCCCEEEeeCccccccCCCcccCCcccc
Confidence                                                                245799999999965542  33445789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc-cccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK-DYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~-~~~~~  237 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+.+.+|.++...+....... ..+..
T Consensus       183 ~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  256 (308)
T 3g33_A          183 LWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN------SEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPP  256 (308)
T ss_dssp             CSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCC
T ss_pred             ccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChhhccchhhccccccCC
Confidence            9999999999999999999999999999999999999876      5788899999999988765543222111 11110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ..         .......       ....+..+.+||.+||++||++|||+.|+|+||||+...
T Consensus       257 ~~---------~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          257 RG---------PRPVQSV-------VPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             CC---------CCCHHHH-------SCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             CC---------CCcHHHh-------CccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence            00         0011111       223467899999999999999999999999999998754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4.2e-37  Score=296.33  Aligned_cols=212  Identities=29%  Similarity=0.523  Sum_probs=158.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+.+..    .++...++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       144 lv~E~~~~~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~-~iiHrDlkp~NIll~--------------------  198 (464)
T 3ttj_A          144 LVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  198 (464)
T ss_dssp             EEEECCSEEHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEeCCCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChHhEEEe--------------------
Confidence            5899997778877754    389999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  .....+||
T Consensus       199 ----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt  226 (464)
T 3ttj_A          199 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  226 (464)
T ss_dssp             ----------------------------------------------------TTSCEEECCCCCC-----CCCC----CC
T ss_pred             ----------------------------------------------------CCCCEEEEEEEeeeecCCCcccCCCccc
Confidence                                                                345799999999966543  23456889


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC-ccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~  237 (329)
                      +.|+|||++.+..|+.++|||||||++|+|++|+.||.+.      +..+++..|.+.+|.++++++...... ..+...
T Consensus       227 ~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~------~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~  300 (464)
T 3ttj_A          227 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVEN  300 (464)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTT
T ss_pred             ccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhc
Confidence            9999999999999999999999999999999999999876      678899999999999888776544311 112221


Q ss_pred             cCchhhhccccccchhHHHhhh-cC----CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDK-YR----FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ......      ..+...+... ..    .....+.++.+||++||++||++|||++|+|+||||+...
T Consensus       301 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~~  363 (464)
T 3ttj_A          301 RPKYAG------LTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  363 (464)
T ss_dssp             SCCCCC------CCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             ccccCC------CChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhcc
Confidence            111110      0111111110 00    0112267899999999999999999999999999998643

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2.5e-36  Score=276.02  Aligned_cols=210  Identities=28%  Similarity=0.448  Sum_probs=161.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||+++|.+++.... ..++...++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        96 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIl~~--------------------  153 (311)
T 3niz_A           96 LVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQH-RILHRDLKPQNLLIN--------------------  153 (311)
T ss_dssp             EEEECCSEEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCchHhEEEC--------------------
Confidence            589999778998887653 4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       154 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  181 (311)
T 3niz_A          154 ----------------------------------------------------SDGALKLADFGLARAFGIPVRSYTHEVV  181 (311)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEETTSCCC---CCCC
T ss_pred             ----------------------------------------------------CCCCEEEccCcCceecCCCcccccCCcc
Confidence                                                                245799999999966542   3344577


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      ...+.+..+...+|.+++..+........+..
T Consensus       182 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3niz_A          182 TLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGV------TDDDQLPKIFSILGTPNPREWPQVQELPLWKQ  255 (311)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------STTTHHHHHHHHHCCCCTTTSGGGTTSHHHHS
T ss_pred             cCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHHCCCChHHhhhhhccchhhh
Confidence            999999999987 46899999999999999999999999876      56778888999999876554433332222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      ......     .......+       ....+.++.+||.+||++||++|||+.|+++||||+..+.
T Consensus       256 ~~~~~~-----~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  309 (311)
T 3niz_A          256 RTFQVF-----EKKPWSSI-------IPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLDP  309 (311)
T ss_dssp             CCCCCC-----CCCCHHHH-------STTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSCT
T ss_pred             cccccc-----cCCcHHHh-------CcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccCCc
Confidence            111000     00001111       1234568899999999999999999999999999998764

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.3e-36  Score=286.19  Aligned_cols=224  Identities=28%  Similarity=0.468  Sum_probs=165.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+++...   .++...+..++.||+.||.|||+. ||+||||||+||+++                    
T Consensus        88 lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~--------------------  143 (388)
T 3oz6_A           88 LVFDYMETDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSG-GLLHRDMKPSNILLN--------------------  143 (388)
T ss_dssp             EEEECCSEEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEecccCcCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC-CEEeCCCCHHHeEEc--------------------
Confidence            58999988999999874   489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                          ....++|+|||++.....          
T Consensus       144 ----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~  171 (388)
T 3oz6_A          144 ----------------------------------------------------AECHVKVADFGLSRSFVNIRRVTNNIPL  171 (388)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEESSSCCCCCCCGGG
T ss_pred             ----------------------------------------------------CCCCEEecCCcccccccccccccccccc
Confidence                                                                345799999999854321          


Q ss_pred             --------------ccccCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHH
Q 020248          151 --------------QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME  215 (329)
Q Consensus       151 --------------~~~~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~  215 (329)
                                    .....+||+.|+|||++.+ ..++.++|||||||++|+|++|.+||.+.      +...++..|..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~~~~i~~  245 (388)
T 3oz6_A          172 SINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS------STMNQLERIIG  245 (388)
T ss_dssp             CCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHH
T ss_pred             cccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHH
Confidence                          1234578999999999987 57999999999999999999999999876      67889999999


Q ss_pred             HhCCCcHHHHhcCCCC--ccccCccCchhhhcccc----ccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH
Q 020248          216 LIGKMPRKIAIGGAQS--KDYFDRHGDLKRIRRLK----FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ  289 (329)
Q Consensus       216 ~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~  289 (329)
                      .+|.++.+........  ..+..............    ......... ........+..+.+||.+||++||++|||++
T Consensus       246 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~  324 (388)
T 3oz6_A          246 VIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLL-KINPKADCNEEALDLLDKLLQFNPNKRISAN  324 (388)
T ss_dssp             HHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHH-HHCTTCCCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             hcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcc-cccccccCCHHHHHHHHHhhccCcccCCCHH
Confidence            9999887766433211  11111000000000000    000111111 1112224467899999999999999999999


Q ss_pred             HHhcCCCcCCCCCChhhh
Q 020248          290 QCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       290 ell~hpwf~~~~~~~~~~  307 (329)
                      |+++||||+.......+.
T Consensus       325 e~l~Hp~~~~~~~~~~~~  342 (388)
T 3oz6_A          325 DALKHPFVSIFHNPNEEP  342 (388)
T ss_dssp             HHTTSTTTTTTCCGGGCC
T ss_pred             HHhCCHHHHHhcCCccCC
Confidence            999999999876655543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=9.3e-37  Score=280.94  Aligned_cols=174  Identities=20%  Similarity=0.337  Sum_probs=136.1

Q ss_pred             Cccccc-chhHHHHHHhhc-------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR-------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPS   66 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~   66 (329)
                      |||||| |++|.+++....             ...+++..+..|+.||+.||+|||++ +|+||||||+|||++.     
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDLKp~NILl~~-----  193 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL-HFVHRDLATRNCLVGQ-----  193 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEET-----
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecccccHhhEEECC-----
Confidence            699999 999999997642             13589999999999999999999995 9999999999999933     


Q ss_pred             CCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccc
Q 020248           67 KDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNAC  146 (329)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~  146 (329)
                                                                                         ...+||+|||++.
T Consensus       194 -------------------------------------------------------------------~~~~Ki~DFGla~  206 (329)
T 4aoj_A          194 -------------------------------------------------------------------GLVVKIGDFGMSR  206 (329)
T ss_dssp             -------------------------------------------------------------------TTEEEECCCC---
T ss_pred             -------------------------------------------------------------------CCcEEEcccccce
Confidence                                                                               4689999999996


Q ss_pred             cccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 020248          147 RANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  220 (329)
Q Consensus       147 ~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~  220 (329)
                      ....     ......||+.|+|||++.+..|+.++|||||||++|||++ |+.||.+.      ...+.+..+.+  |. 
T Consensus       207 ~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~------~~~~~~~~i~~--g~-  277 (329)
T 4aoj_A          207 DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL------SNTEAIDCITQ--GR-  277 (329)
T ss_dssp             -------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS------CHHHHHHHHHH--TC-
T ss_pred             eccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC------CHHHHHHHHHc--CC-
Confidence            5432     2234578999999999999999999999999999999998 89999876      23333333321  11 


Q ss_pred             cHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          221 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            ....+..++.++.+||.+||+.||++|||+.||+++
T Consensus       278 --------------------------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          278 --------------------------------------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             --------------------------------------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             --------------------------------------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                                                  112344567789999999999999999999999764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.5e-37  Score=278.82  Aligned_cols=177  Identities=20%  Similarity=0.351  Sum_probs=142.0

Q ss_pred             Cccccc-chhHHHHHHhhc-----------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR-----------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKD   68 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-----------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~   68 (329)
                      |||||| |++|.+++....           ...+++..+..++.||+.||+|||++ +|+||||||+|||++        
T Consensus        92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDlKp~NILl~--------  162 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ-HFVHRDLATRNCLVG--------  162 (299)
T ss_dssp             EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC--------
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccCHhhEEEC--------
Confidence            699999 999999998642           23599999999999999999999995 999999999999993        


Q ss_pred             CCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc
Q 020248           69 PIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA  148 (329)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~  148 (329)
                                                                                      ....+||+|||+|...
T Consensus       163 ----------------------------------------------------------------~~~~~Ki~DFGla~~~  178 (299)
T 4asz_A          163 ----------------------------------------------------------------ENLLVKIGDFGMSRDV  178 (299)
T ss_dssp             ----------------------------------------------------------------GGGCEEECCCSCHHHH
T ss_pred             ----------------------------------------------------------------CCCcEEECCcccceec
Confidence                                                                            3467999999999544


Q ss_pred             ccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          149 NKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       149 ~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      ...     .....||+.|+|||++.+..|+.++|||||||++|||+| |+.||.+.      ...+.+..+.+  |.   
T Consensus       179 ~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~------~~~~~~~~i~~--~~---  247 (299)
T 4asz_A          179 YSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL------SNNEVIECITQ--GR---  247 (299)
T ss_dssp             TGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHHHHHH--TC---
T ss_pred             CCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC------CHHHHHHHHHc--CC---
Confidence            321     122357899999999999999999999999999999998 99999876      23333333321  11   


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                          ..+.+..++.++.+||.+||+.||++|||+.||  |+|+..
T Consensus       248 ------------------------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i--~~~L~~  286 (299)
T 4asz_A          248 ------------------------------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGI--HTLLQN  286 (299)
T ss_dssp             ------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH--HHHHHH
T ss_pred             ------------------------------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHH--HHHHHH
Confidence                                                112344557789999999999999999999999  456653

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.8e-36  Score=280.62  Aligned_cols=211  Identities=32%  Similarity=0.541  Sum_probs=167.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++...   .++...+..++.||+.||.|||+. ||+||||||+||+++                    
T Consensus       107 lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~--------------------  162 (367)
T 1cm8_A          107 LVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPGNLAVN--------------------  162 (367)
T ss_dssp             EEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCHHHEEEc--------------------
Confidence            58999999999999873   489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+..........++|+.
T Consensus       163 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~t~~  190 (367)
T 1cm8_A          163 ----------------------------------------------------EDCELKILDFGLARQADSEMTGYVVTRW  190 (367)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEECCSSCCSSCSCGG
T ss_pred             ----------------------------------------------------CCCCEEEEeeecccccccccCcCcCCCC
Confidence                                                                3457999999999877666667788999


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~  237 (329)
                      |+|||++.+ ..++.++||||+||++|+|++|..||.+.      +..+++..|.+.+|.+|.++........  .+...
T Consensus       191 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  264 (367)
T 1cm8_A          191 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS------DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKG  264 (367)
T ss_dssp             GCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHH
T ss_pred             cCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHh
Confidence            999999988 67999999999999999999999999876      6788999999999999988876543221  11110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ....      ....+..       .....+..+.+||.+||++||++|||+.|+++||||.......++
T Consensus       265 ~~~~------~~~~~~~-------~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~~~~  320 (367)
T 1cm8_A          265 LPEL------EKKDFAS-------ILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDE  320 (367)
T ss_dssp             SCCC------CCCCGGG-------TCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-----
T ss_pred             CCCC------CCCCHHH-------HCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCCccC
Confidence            0000      0000111       122346789999999999999999999999999999987665544

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.1e-36  Score=277.97  Aligned_cols=174  Identities=17%  Similarity=0.349  Sum_probs=140.8

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      |||||| |++|.+++....              ...+++..+..++.||+.||+|||++ +|+||||||+|||++     
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~-~iiHRDLK~~NILl~-----  179 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH-HVVHKDLATRNVLVY-----  179 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-----
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCccccceEEC-----
Confidence            689999 999999997532              13588999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....+||+|||++
T Consensus       180 -------------------------------------------------------------------~~~~~Ki~DFGla  192 (308)
T 4gt4_A          180 -------------------------------------------------------------------DKLNVKISDLGLF  192 (308)
T ss_dssp             -------------------------------------------------------------------GGGCEEECCSCCB
T ss_pred             -------------------------------------------------------------------CCCCEEECCcccc
Confidence                                                                               3467999999998


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......||+.|+|||++.+..|+.++|||||||++|||++ |..||.+.      ...+.+..+..  |.
T Consensus       193 r~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~------~~~~~~~~i~~--~~  264 (308)
T 4gt4_A          193 REVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY------SNQDVVEMIRN--RQ  264 (308)
T ss_dssp             CGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC------CHHHHHHHHHT--TC
T ss_pred             eeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--CC
Confidence            64432     2334578999999999999999999999999999999998 89999876      23333332211  11


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ..+.+..++..+.+||.+||+.||++|||++||+++
T Consensus       265 ---------------------------------------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          265 ---------------------------------------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------------------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                                   012344567789999999999999999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=7.9e-37  Score=283.77  Aligned_cols=175  Identities=23%  Similarity=0.376  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      |||||| |++|.+++.....              ..+++..+..++.||+.||+|||++ +||||||||+|||++     
T Consensus       146 iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~-~iiHRDLK~~NILl~-----  219 (353)
T 4ase_A          146 VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS-----  219 (353)
T ss_dssp             EEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-----
T ss_pred             EEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC-CeecCccCccceeeC-----
Confidence            589999 9999999986431              3488999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....+||+|||+|
T Consensus       220 -------------------------------------------------------------------~~~~vKi~DFGla  232 (353)
T 4ase_A          220 -------------------------------------------------------------------EKNVVKICDFGLA  232 (353)
T ss_dssp             -------------------------------------------------------------------GGGCEEECCCGGG
T ss_pred             -------------------------------------------------------------------CCCCEEECcchhh
Confidence                                                                               3457999999999


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......||+.|+|||++.+..|+.++|||||||++|||++ |..||.+..      ....+..++.. |.
T Consensus       233 r~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~------~~~~~~~~i~~-g~  305 (353)
T 4ase_A          233 RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK------IDEEFCRRLKE-GT  305 (353)
T ss_dssp             SCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------CSHHHHHHHHH-TC
T ss_pred             hhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC------HHHHHHHHHHc-CC
Confidence            65432     1223467899999999999999999999999999999998 999998752      12222222111 11


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+..++.++.+||.+||+.||++|||++||++|
T Consensus       306 ---------------------------------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          306 ---------------------------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                                                   112344557789999999999999999999999987

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=4.4e-36  Score=288.57  Aligned_cols=221  Identities=29%  Similarity=0.452  Sum_probs=161.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...  ..+++..++.++.||+.||.|||+. ||+||||||+|||++                    
T Consensus       134 lv~e~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~iiHrDlKp~NILl~--------------------  190 (458)
T 3rp9_A          134 VVLEIADSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSA-GILHRDLKPANCLVN--------------------  190 (458)
T ss_dssp             EEECCCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC--------------------
T ss_pred             EEEeccccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHHHhC-CcCCCCCChhhEEEC--------------------
Confidence            58999999999999865  4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                          ....++|+|||++.....          
T Consensus       191 ----------------------------------------------------~~~~~kl~DFGla~~~~~~~~~~~~~~~  218 (458)
T 3rp9_A          191 ----------------------------------------------------QDCSVKVCDFGLARTVDYPENGNSQLPI  218 (458)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCBCTTSCTTCCCCCC-
T ss_pred             ----------------------------------------------------CCCCEeecccccchhccCcccccccccc
Confidence                                                                345799999999965431          


Q ss_pred             --------------------ccccCCCCCCCcchHHhh-cCCCCccchHHHHHHHHHHHHh-----------CCcCCCCC
Q 020248          151 --------------------QFAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELAT-----------GDMLFAPK  198 (329)
Q Consensus       151 --------------------~~~~~~~~~~y~aPE~~~-~~~~s~~~DiwslG~il~~l~~-----------g~~pf~~~  198 (329)
                                          .....+||+.|+|||++. +..|+.++|||||||++|+|++           |.++|.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~  298 (458)
T 3rp9_A          219 SPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGS  298 (458)
T ss_dssp             --------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--
T ss_pred             CccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCC
Confidence                                223457799999999875 4569999999999999999998           67777664


Q ss_pred             CCCCC--------------CCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCccCchhhhccccccchhHHHhhhcCC
Q 020248          199 SGQGF--------------CEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDRHGDLKRIRRLKFWSLDRLLVDKYRF  262 (329)
Q Consensus       199 ~~~~~--------------~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (329)
                      ...+.              ....+++..|.+++|.++.+.+.......  .+........      ...+...       
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------  365 (458)
T 3rp9_A          299 SCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKRE------GTDLAER-------  365 (458)
T ss_dssp             ------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCC------CCCGGGG-------
T ss_pred             ccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCC------CCCHHHH-------
Confidence            31111              11367899999999999988765443221  1111000000      0001111       


Q ss_pred             ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhc
Q 020248          263 SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKN  309 (329)
Q Consensus       263 ~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~  309 (329)
                      ....+..+.+||++||++||++|||++|+|+||||+...+...+...
T Consensus       366 ~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~~e~~~  412 (458)
T 3rp9_A          366 FPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAEVETNA  412 (458)
T ss_dssp             STTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGGGCCCC
T ss_pred             CCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCccCCCC
Confidence            12236789999999999999999999999999999999877665443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=8.7e-36  Score=269.47  Aligned_cols=210  Identities=27%  Similarity=0.402  Sum_probs=159.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||+++|.+.+.... ..+++..++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        78 lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~-~ivH~dikp~Nil~~--------------------  135 (292)
T 3o0g_A           78 LVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLIN--------------------  135 (292)
T ss_dssp             EEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC--------------------
T ss_pred             EEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc--------------------
Confidence            589999777777776533 4699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       136 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  163 (292)
T 3o0g_A          136 ----------------------------------------------------RNGELKLANFGLARAFGIPVRCYSAEVV  163 (292)
T ss_dssp             ----------------------------------------------------TTSCEEECCCTTCEECCSCCSCCCSCCS
T ss_pred             ----------------------------------------------------CCCCEEEeecccceecCCccccccCCcc
Confidence                                                                345799999999965542   2344577


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+.. ++.++||||+||++|+|++|..||....     +....+..+.+.+|.++...+........+..
T Consensus       164 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  238 (292)
T 3o0g_A          164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP  238 (292)
T ss_dssp             CGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCC
T ss_pred             ccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC-----CHHHHHHHHHHHhCCCChhhhhhhcccccccc
Confidence            89999999998876 8999999999999999999888865442     56778899999999887665543322222111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      .... ...            ..........+..+.+||++||++||++|||++|+++||||++...
T Consensus       239 ~~~~-~~~------------~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~p  291 (292)
T 3o0g_A          239 YPMY-PAT------------TSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFCP  291 (292)
T ss_dssp             CCCC-CTT------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC--
T ss_pred             cccc-cCC------------cchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccCCC
Confidence            0000 000            0001122345678999999999999999999999999999998653

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=7.4e-36  Score=274.91  Aligned_cols=215  Identities=27%  Similarity=0.446  Sum_probs=161.0

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||++++|.+++....  .+++..++.++.||+.||.|||++ ||+||||||+||++.....                
T Consensus       110 lv~e~~~~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~----------------  170 (329)
T 3gbz_A          110 LIFEYAENDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSR-RCLHRDLKPQNLLLSVSDA----------------  170 (329)
T ss_dssp             EEEECCSEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEC-------------------
T ss_pred             EEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CEECCCCCHHHEEEecCCC----------------
Confidence            589999779999998764  499999999999999999999995 9999999999999953210                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                         .....++|+|||.+.....   ......+
T Consensus       171 ---------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  199 (329)
T 3gbz_A          171 ---------------------------------------------------SETPVLKIGDFGLARAFGIPIRQFTHEII  199 (329)
T ss_dssp             -----------------------------------------------------CCEEEECCTTHHHHHC-----------
T ss_pred             ---------------------------------------------------CccceEEECcCCCccccCCcccccCCCcC
Confidence                                                               1234699999999965442   3344567


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      ...+.+..+.+.+|.++...+........+..
T Consensus       200 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (329)
T 3gbz_A          200 TLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD------SEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQ  273 (329)
T ss_dssp             CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             CccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC------CHHHHHHHHHHHhCCCchhhhhhhhhhhhhhh
Confidence            9999999999875 4899999999999999999999999876      57788889999999877655433322222222


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ......      .......+      +...+..+.+||.+||++||++|||+.|+++||||+..++.
T Consensus       274 ~~~~~~------~~~~~~~~------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          274 SFPKFR------GKTLKRVL------GALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             TCCCCC------CCCHHHHH------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCSC
T ss_pred             hhhhhc------cccHhhhc------ccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCCC
Confidence            111111      11122222      22346788999999999999999999999999999988764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.4e-35  Score=271.72  Aligned_cols=219  Identities=31%  Similarity=0.517  Sum_probs=165.9

Q ss_pred             CcccccchhHHHHHHhhcC----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSRY----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      |||||++++|.+++.....    ..++...++.++.||+.||.|||++ ||+||||||+||+++                
T Consensus        80 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~-~ivH~Dlkp~NIl~~----------------  142 (317)
T 2pmi_A           80 LVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN-KILHRDLKPQNLLIN----------------  142 (317)
T ss_dssp             EEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC----------------
T ss_pred             EEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCChHHeEEc----------------
Confidence            5899997799999886532    3489999999999999999999995 999999999999993                


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccc
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFA  153 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~  153 (329)
                                                                              ....++|+|||.+.....   ...
T Consensus       143 --------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~  166 (317)
T 2pmi_A          143 --------------------------------------------------------KRGQLKLGDFGLARAFGIPVNTFS  166 (317)
T ss_dssp             --------------------------------------------------------TTCCEEECCCSSCEETTSCCCCCC
T ss_pred             --------------------------------------------------------CCCCEEECcCccceecCCCcccCC
Confidence                                                                    345799999999965542   234


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+|+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      +....+..+...+|.++..++.......
T Consensus       167 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~  240 (317)
T 2pmi_A          167 SEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT------NDEEQLKLIFDIMGTPNESLWPSVTKLP  240 (317)
T ss_dssp             CCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCTTTCGGGGGCT
T ss_pred             CCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChhHhhhhhhhh
Confidence            45789999999999874 6899999999999999999999999876      5778889999999988776654433222


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      .+.....      ..........+...  .....+..+.+||++||+.||++|||+.|+++||||+...+...+
T Consensus       241 ~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~  306 (317)
T 2pmi_A          241 KYNPNIQ------QRPPRDLRQVLQPH--TKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHASM  306 (317)
T ss_dssp             TCCTTCC------CCCCCCSHHHHGGG--CSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC----
T ss_pred             hcccccc------cccchhHHHhhccc--ccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccchhhc
Confidence            2211100      00011122222111  123346789999999999999999999999999999987765443

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=276.34  Aligned_cols=222  Identities=25%  Similarity=0.465  Sum_probs=164.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        77 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~--------------------  134 (324)
T 3mtl_A           77 LVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQ-KVLHRDLKPQNLLIN--------------------  134 (324)
T ss_dssp             EEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCCGGGEEEC--------------------
T ss_pred             EEecccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCcCHHHEEEC--------------------
Confidence            589999779999888753 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       135 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  162 (324)
T 3mtl_A          135 ----------------------------------------------------ERGELKLADFGLARAKSIPTKTYDNEVV  162 (324)
T ss_dssp             ----------------------------------------------------TTCCEEECSSSEEECC------------
T ss_pred             ----------------------------------------------------CCCCEEEccCcccccccCCccccccccC
Confidence                                                                245799999999865442   2234467


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      ...+.+..+.+.+|.++...+........+..
T Consensus       163 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  236 (324)
T 3mtl_A          163 TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS------TVEEQLHFIFRILGTPTEETWPGILSNEEFKT  236 (324)
T ss_dssp             CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHH
T ss_pred             cccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCChHhchhhhcchhhcc
Confidence            899999999987 56899999999999999999999999876      57889999999999877655433222211110


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcCCCcc
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKSNVE  314 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~~~~~  314 (329)
                      ...        ..........    .....+..+.+||.+||++||++|||++|+++||||.............+...
T Consensus       237 ~~~--------~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~~~~~~~~~~  302 (324)
T 3mtl_A          237 YNY--------PKYRAEALLS----HAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIHKLPDTTSIF  302 (324)
T ss_dssp             TCC--------CCCCCCCHHH----HCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCSTTSSSCTTSCGG
T ss_pred             ccc--------ccccchhhhh----hcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccccccCCCCCcHh
Confidence            000        0000000100    12234578899999999999999999999999999998876655544444333

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.6e-35  Score=277.17  Aligned_cols=211  Identities=30%  Similarity=0.505  Sum_probs=152.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||++|++|.+++..   ..++...+..++.||+.||.|||+. ||+||||||+||+++                    
T Consensus       111 lv~e~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~--------------------  166 (367)
T 2fst_X          111 LVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVN--------------------  166 (367)
T ss_dssp             EEEECCCEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHhhEEEC--------------------
Confidence            5789999999998876   3499999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........+|+.
T Consensus       167 ----------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~t~~  194 (367)
T 2fst_X          167 ----------------------------------------------------EDCELKILDFGLARHTADEMTGYVATRW  194 (367)
T ss_dssp             ----------------------------------------------------TTCCEEECC---------------CCCT
T ss_pred             ----------------------------------------------------CCCCEEEeeccccccccccCCCcCcCcC
Confidence                                                                3457999999999776666666788999


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~  237 (329)
                      |+|||++.+ ..++.++|||||||++|+|++|..||.+.      +..+++..|.+.+|.++..++.......  .+...
T Consensus       195 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~  268 (367)
T 2fst_X          195 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRLVGTPGAELLKKISSESARNYIQS  268 (367)
T ss_dssp             TCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHT
T ss_pred             ccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhc
Confidence            999999987 57999999999999999999999999876      6788999999999998887765432110  11100


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ..      ......+...+       ...+..+.+||.+||++||++|||+.|+|+||||.....+.++
T Consensus       269 ~~------~~~~~~~~~~~-------~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~~~~  324 (367)
T 2fst_X          269 LT------QMPKMNFANVF-------IGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDE  324 (367)
T ss_dssp             SC------CCCCCCHHHHT-------TTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCGGGC
T ss_pred             cC------CCCCCCHHHHC-------CCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCCCCC
Confidence            00      00011112221       1235689999999999999999999999999999987665543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=5.1e-35  Score=279.38  Aligned_cols=219  Identities=32%  Similarity=0.462  Sum_probs=160.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+++...  ..++...++.++.||+.||.|||+. ||+||||||+||+++                    
T Consensus       107 lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~LH~~-givHrDlkp~NILl~--------------------  163 (432)
T 3n9x_A          107 IVLEIADSDLKKLFKTP--IFLTEEHIKTILYNLLLGENFIHES-GIIHRDLKPANCLLN--------------------  163 (432)
T ss_dssp             EEEECCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEEecCCcCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHeEEC--------------------
Confidence            58999988999999865  4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                          ....++|+|||.+......         
T Consensus       164 ----------------------------------------------------~~~~~kL~DFGla~~~~~~~~~~~~~~~  191 (432)
T 3n9x_A          164 ----------------------------------------------------QDCSVKVCDFGLARTINSEKDTNIVNDL  191 (432)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEEC------------
T ss_pred             ----------------------------------------------------CCCCEEEccCCCcccccccccccccccc
Confidence                                                                3457999999999654321         


Q ss_pred             ----------------cccCCCCCCCcchHHhh-cCCCCccchHHHHHHHHHHHHhC-----------CcCCCCCCCCCC
Q 020248          152 ----------------FAEEIQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATG-----------DMLFAPKSGQGF  203 (329)
Q Consensus       152 ----------------~~~~~~~~~y~aPE~~~-~~~~s~~~DiwslG~il~~l~~g-----------~~pf~~~~~~~~  203 (329)
                                      ....+||+.|+|||++. ...++.++|||||||++|+|++|           +++|.+.+..+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~  271 (432)
T 3n9x_A          192 EENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPL  271 (432)
T ss_dssp             -------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC-
T ss_pred             cccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCcccccc
Confidence                            25567899999999975 45699999999999999999985           444443321111


Q ss_pred             C-----------CchHHHHHHHHHhCCCcHHHHhcCCCCcc--ccCccCchhhhccccccchhHHHhhhcCCChhhHHHH
Q 020248          204 C-----------EDEDHLALMMELIGKMPRKIAIGGAQSKD--YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREF  270 (329)
Q Consensus       204 ~-----------~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (329)
                      .           ...+++..|.+++|.++.+.+........  +......      .....+...       ....+..+
T Consensus       272 ~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~s~~~  338 (432)
T 3n9x_A          272 SPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPH------RKPINLKQK-------YPSISDDG  338 (432)
T ss_dssp             ---------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCC------CCCCCHHHH-------STTSCHHH
T ss_pred             CcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCC------CCCCCHHHH-------CCCCCHHH
Confidence            0           13678999999999999877654332211  1000000      000011111       12246789


Q ss_pred             HHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          271 AEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       271 ~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      .+||.+||++||++|||++|+|+||||+...+...+.
T Consensus       339 ~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~e~  375 (432)
T 3n9x_A          339 INLLESMLKFNPNKRITIDQALDHPYLKDVRKKKLEN  375 (432)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTTC-
T ss_pred             HHHHHHHhcCCcccCCCHHHHhcChhhhhccCcccCc
Confidence            9999999999999999999999999999988776554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.8e-35  Score=274.82  Aligned_cols=191  Identities=27%  Similarity=0.465  Sum_probs=151.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..+..++.||+.||.|||+. ||+||||||+||++....                
T Consensus        92 lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~~~----------------  152 (361)
T 2yab_A           92 LILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKN----------------  152 (361)
T ss_dssp             EEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCTT----------------
T ss_pred             EEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEeCCC----------------
Confidence            589999 99999999765  4599999999999999999999995 999999999999994310                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       153 ----------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~~~~~g  180 (361)
T 2yab_A          153 ----------------------------------------------------IPIPHIKLIDFGLAHEIEDGVEFKNIFG  180 (361)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCSSCEECCTTCCCCCCCS
T ss_pred             ----------------------------------------------------CCccCEEEEecCCceEcCCCCccccCCC
Confidence                                                                1123699999999965543  3345678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+......++...+            
T Consensus       181 t~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~------~~~~~~~~i~~~~~~~~~~~~------------  242 (361)
T 2yab_A          181 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD------TKQETLANITAVSYDFDEEFF------------  242 (361)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHTTCCCCCHHHH------------
T ss_pred             CccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhcCCCCCchhc------------
Confidence            99999999999999999999999999999999999999765      344444444322112221111            


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                                ...+..+.+||.+||+.||++|||+.|+++||||+..++....
T Consensus       243 --------------------------~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~~~~~  285 (361)
T 2yab_A          243 --------------------------SQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDTQQAM  285 (361)
T ss_dssp             --------------------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCSSHHHHH
T ss_pred             --------------------------cCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCCchhhhh
Confidence                                      1225678999999999999999999999999999987654433

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=3.3e-35  Score=265.33  Aligned_cols=207  Identities=28%  Similarity=0.478  Sum_probs=154.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        77 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~--------------------  134 (288)
T 1ob3_A           77 LVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDR-RVLHRDLKPQNLLIN--------------------  134 (288)
T ss_dssp             EEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC--------------------
T ss_pred             EEEEecCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc--------------------
Confidence            589999779999988643 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       135 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  162 (288)
T 1ob3_A          135 ----------------------------------------------------REGELKIADFGLARAFGIPVRKYTHEIV  162 (288)
T ss_dssp             ----------------------------------------------------TTSCEEECCTTHHHHHCC---------C
T ss_pred             ----------------------------------------------------CCCCEEEeECccccccCccccccccccc
Confidence                                                                345799999999865442   2334567


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+..+.+.+|..+...+........+-.
T Consensus       163 t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (288)
T 1ob3_A          163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV------SEADQLMRIFRILGTPNSKNWPNVTELPKYDP  236 (288)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             cccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHHCCCChhhchhhhccccccc
Confidence            9999999999864 5899999999999999999999999876      56778888888888766543321111111100


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                         .......   ....       ......+..+.+||++||+.||++|||+.|+++||||+..
T Consensus       237 ---~~~~~~~---~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          237 ---NFTVYEP---LPWE-------SFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             ---TCCCCCC---CCGG-------GTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             ---ccccccC---ccHH-------HHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence               0000000   0000       1123346788999999999999999999999999999864

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-35  Score=270.47  Aligned_cols=182  Identities=26%  Similarity=0.407  Sum_probs=152.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        83 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  140 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILLD-------------------  140 (318)
T ss_dssp             EEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChheEEEc-------------------
Confidence            589999 89999999875  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+..........+||+
T Consensus       141 -----------------------------------------------------~~g~~kL~Dfg~a~~~~~~~~~~~gt~  167 (318)
T 1fot_A          141 -----------------------------------------------------KNGHIKITDFGFAKYVPDVTYTLCGTP  167 (318)
T ss_dssp             -----------------------------------------------------TTSCEEECCCSSCEECSSCBCCCCSCT
T ss_pred             -----------------------------------------------------CCCCEEEeecCcceecCCccccccCCc
Confidence                                                                 345799999999977766666778999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|+|||||++|+|++|..||...      +.......+.                         
T Consensus       168 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i~-------------------------  216 (318)
T 1fot_A          168 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS------NTMKTYEKIL-------------------------  216 (318)
T ss_dssp             TTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHH-------------------------
T ss_pred             cccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC------CHHHHHHHHH-------------------------
Confidence            999999999999999999999999999999999999765      2222222222                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~  305 (329)
                                       .....++...+..+.+||.+||+.||++|+     ++.|+++||||+...|..-
T Consensus       217 -----------------~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~  270 (318)
T 1fot_A          217 -----------------NAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKL  270 (318)
T ss_dssp             -----------------HCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHH
T ss_pred             -----------------hCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHHHH
Confidence                             122223444567899999999999999999     9999999999998876544

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=276.29  Aligned_cols=182  Identities=26%  Similarity=0.436  Sum_probs=147.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       101 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NILl~-------------------  158 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEIISALMFLHDK-GIIYRDLKLDNVLLD-------------------  158 (353)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHEEEC-------------------
Confidence            589999 89999999876  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||++....   ......+
T Consensus       159 -----------------------------------------------------~~g~ikL~DFG~a~~~~~~~~~~~~~~  185 (353)
T 3txo_A          159 -----------------------------------------------------HEGHCKLADFGMCKEGICNGVTTATFC  185 (353)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCBCSCC---------
T ss_pred             -----------------------------------------------------CCCCEEEccccceeecccCCccccccC
Confidence                                                                 34579999999986432   2344567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.      +.......|..                     
T Consensus       186 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~------~~~~~~~~i~~---------------------  238 (353)
T 3txo_A          186 GTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE------NEDDLFEAILN---------------------  238 (353)
T ss_dssp             CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH---------------------
T ss_pred             CCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC------CHHHHHHHHHc---------------------
Confidence            899999999999989999999999999999999999999765      23333333321                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH------HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta------~ell~hpwf~~~~~~~~  305 (329)
                                           ....++...+..+.+||++||+.||++|+++      .|+++||||+.++|..-
T Consensus       239 ---------------------~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l  292 (353)
T 3txo_A          239 ---------------------DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQL  292 (353)
T ss_dssp             ---------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHH
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHHHH
Confidence                                 2222344456789999999999999999998      89999999999876543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-35  Score=277.61  Aligned_cols=231  Identities=26%  Similarity=0.375  Sum_probs=158.8

Q ss_pred             CcccccchhHHHHHHhhcC-------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSRY-------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~-------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      |||||++++|.+++.....       ..++...++.++.||+.||.|||++ ||+||||||+||++....          
T Consensus        97 lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~-~ivH~Dlkp~NIll~~~~----------  165 (405)
T 3rgf_A           97 LLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN-WVLHRDLKPANILVMGEG----------  165 (405)
T ss_dssp             EEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEECCSS----------
T ss_pred             EEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeCCCcCHHHeEEecCC----------
Confidence            5899998899988875421       2389999999999999999999995 999999999999994310          


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  150 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---  150 (329)
                                                                                .....++|+|||.+.....   
T Consensus       166 ----------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~  187 (405)
T 3rgf_A          166 ----------------------------------------------------------PERGRVKIADMGFARLFNSPLK  187 (405)
T ss_dssp             ----------------------------------------------------------TTTTCEEECCTTCCC-------
T ss_pred             ----------------------------------------------------------CCCCcEEEEECCCceecCCCCc
Confidence                                                                      1245799999999965542   


Q ss_pred             ---ccccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCC---CCCCchHHHHHHHHHhCCCcHH
Q 020248          151 ---QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQ---GFCEDEDHLALMMELIGKMPRK  223 (329)
Q Consensus       151 ---~~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~---~~~~~~~~l~~i~~~~g~~p~~  223 (329)
                         .....+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+....   ......+++..|...+|.++..
T Consensus       188 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~  267 (405)
T 3rgf_A          188 PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADK  267 (405)
T ss_dssp             ---------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTT
T ss_pred             ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChh
Confidence               22345789999999999885 5899999999999999999999999765321   1122468899999999988765


Q ss_pred             HHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          224 IAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      .+........+......+.... .......+.+.   ......+..+.+||++||++||++|||++|+|+||||.....+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          268 DWEDIKKMPEHSTLMKDFRRNT-YTNCSLIKYME---KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             TCGGGGGSTTHHHHHHHCCGGG-GTTCCHHHHHH---TTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             hcchhhcCcchhhhhhhccccC-CCcchhhhhHh---hcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCC
Confidence            5443322211111000000000 00001111111   1112235678999999999999999999999999999976554


Q ss_pred             h
Q 020248          304 R  304 (329)
Q Consensus       304 ~  304 (329)
                      .
T Consensus       344 ~  344 (405)
T 3rgf_A          344 T  344 (405)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=5.3e-35  Score=269.50  Aligned_cols=178  Identities=25%  Similarity=0.472  Sum_probs=146.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++                    
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~NIll--------------------  147 (328)
T 3fe3_A           91 LIMEYASGGEVFDYLVAH--GRMKEKEARSKFRQIVSAVQYCHQK-RIVHRDLKAENLLL--------------------  147 (328)
T ss_dssp             EEECCCTTCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------------------
T ss_pred             EEEECCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCCHHHEEE--------------------
Confidence            589999 89999999876  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +....++|+|||.+....  ......+|
T Consensus       148 ----------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~~~~~g  175 (328)
T 3fe3_A          148 ----------------------------------------------------DADMNIKIADFGFSNEFTVGGKLDAFCG  175 (328)
T ss_dssp             ----------------------------------------------------CTTSCEEECSTTCCGGGSSSCGGGTTSS
T ss_pred             ----------------------------------------------------cCCCCEEEeeccCceecCCCCccccccC
Confidence                                                                334579999999986543  33455678


Q ss_pred             CCCCcchHHhhcCCCC-ccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGYS-FSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s-~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+..+. .++||||+||++|+|++|..||.+.      +.......+                       
T Consensus       176 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i-----------------------  226 (328)
T 3fe3_A          176 APPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ------NLKELRERV-----------------------  226 (328)
T ss_dssp             SGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHH-----------------------
T ss_pred             CcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC------CHHHHHHHH-----------------------
Confidence            9999999999988764 8999999999999999999999765      222222222                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         ....+..+...+..+.+||++||++||.+|||+.|+++||||....
T Consensus       227 -------------------~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          227 -------------------LRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGH  272 (328)
T ss_dssp             -------------------HHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTC
T ss_pred             -------------------HhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCC
Confidence                               1222233444567899999999999999999999999999998654

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=4.5e-35  Score=276.47  Aligned_cols=190  Identities=27%  Similarity=0.411  Sum_probs=152.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|..++...  +.+++..++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus       130 lV~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl--------------------  186 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLL--------------------  186 (396)
T ss_dssp             EEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE--------------------
T ss_pred             EEEEcCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEE--------------------
Confidence            589999 89999999876  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccc---ccccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRA---NKQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~---~~~~~~~~  156 (329)
                                                                          +....++|+|||++...   .......+
T Consensus       187 ----------------------------------------------------~~~g~ikL~DFGla~~~~~~~~~~~~~~  214 (396)
T 4dc2_A          187 ----------------------------------------------------DSEGHIKLTDYGMCKEGLRPGDTTSTFC  214 (396)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCBCCCCTTCCBCCCC
T ss_pred             ----------------------------------------------------CCCCCEEEeecceeeecccCCCcccccc
Confidence                                                                33567999999998642   23445668


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC--CCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGF--CEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||........  ......+                        
T Consensus       215 gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~------------------------  270 (396)
T 4dc2_A          215 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL------------------------  270 (396)
T ss_dssp             BCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHH------------------------
T ss_pred             CCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHH------------------------
Confidence            99999999999999999999999999999999999999975421100  0000000                        


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH------HHHhcCCCcCCCCCChhh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta------~ell~hpwf~~~~~~~~~  306 (329)
                                       ...+......++...+..+.+||++||+.||++|+++      +|+++||||+.++|..-.
T Consensus       271 -----------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~  331 (396)
T 4dc2_A          271 -----------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMME  331 (396)
T ss_dssp             -----------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHH
T ss_pred             -----------------HHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHH
Confidence                             1222333344556667899999999999999999995      799999999998775543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1e-34  Score=274.00  Aligned_cols=214  Identities=27%  Similarity=0.479  Sum_probs=163.5

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||||++++.+.+...  ....++...++.++.||+.||.|||++ ||+||||||+||+++.                 
T Consensus       115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~-----------------  176 (394)
T 4e7w_A          115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI-GICHRDIKPQNLLLDP-----------------  176 (394)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEET-----------------
T ss_pred             EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEcC-----------------
Confidence            58999966665554432  235699999999999999999999995 9999999999999942                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                            ....++|+|||.+....  .......
T Consensus       177 ------------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~  202 (394)
T 4e7w_A          177 ------------------------------------------------------PSGVLKLIDFGSAKILIAGEPNVSYI  202 (394)
T ss_dssp             ------------------------------------------------------TTTEEEECCCTTCEECCTTCCCCSSC
T ss_pred             ------------------------------------------------------CCCcEEEeeCCCcccccCCCCCcccc
Confidence                                                                  24579999999996543  3445567


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+. .++.++||||+||++|+|++|..||.+.      +..+.+..+.+.+|.++.+.+......  +.
T Consensus       203 ~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~l~~i~~~~g~p~~~~~~~~~~~--~~  274 (394)
T 4e7w_A          203 CSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE------SGIDQLVEIIKVLGTPSREQIKTMNPN--YM  274 (394)
T ss_dssp             SCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHHHCGG--GS
T ss_pred             cCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhChh--hh
Confidence            89999999999876 5899999999999999999999999876      578899999999999887665432211  10


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      ..  .+..   .....+...      ++...+.++.+||.+||++||++|||+.|+++||||+...+...
T Consensus       275 ~~--~~~~---~~~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          275 EH--KFPQ---IRPHPFSKV------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             SS--CCCC---CCCCCHHHH------SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTSSCC
T ss_pred             hh--cccc---ccCCcHHHh------ccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhccccc
Confidence            00  0000   001112222      23335678999999999999999999999999999998766544

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1e-34  Score=263.69  Aligned_cols=182  Identities=29%  Similarity=0.499  Sum_probs=146.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...   .++...+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        94 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~~-------------------  150 (297)
T 3fxz_A           94 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLG-------------------  150 (297)
T ss_dssp             EEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEEC-------------------
Confidence            589999 99999999874   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       151 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  177 (297)
T 3fxz_A          151 -----------------------------------------------------MDGSVKLTDFGFCAQITPEQSKRSTMV  177 (297)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCceecCCcccccCCcc
Confidence                                                                 245799999999865442   234457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||...      +....+..+.....+                 
T Consensus       178 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~-----------------  234 (297)
T 3fxz_A          178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE------NPLRALYLIATNGTP-----------------  234 (297)
T ss_dssp             SCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHHHCSC-----------------
T ss_pred             CCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCC-----------------
Confidence            899999999999999999999999999999999999999765      233333332211100                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            ....+...+..+.+||.+||+.||++|||+.|+++||||+.....
T Consensus       235 ----------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~~  279 (297)
T 3fxz_A          235 ----------------------ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPL  279 (297)
T ss_dssp             ----------------------CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCG
T ss_pred             ----------------------CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccCcc
Confidence                                  001123346789999999999999999999999999999976543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=6.6e-35  Score=270.57  Aligned_cols=215  Identities=23%  Similarity=0.390  Sum_probs=163.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||+++|.+.+.... ..++...++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       101 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~--------------------  158 (351)
T 3mi9_A          101 LVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLIT--------------------  158 (351)
T ss_dssp             EEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC--------------------
T ss_pred             EEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCHHHEEEc--------------------
Confidence            589999778888887643 4599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-------cccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-------KQFA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-------~~~~  153 (329)
                                                                          ....++|+|||.+....       ....
T Consensus       159 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  186 (351)
T 3mi9_A          159 ----------------------------------------------------RDGVLKLADFGLARAFSLAKNSQPNRYT  186 (351)
T ss_dssp             ----------------------------------------------------TTSCEEECCCTTCEECCCCSSSSCCCCC
T ss_pred             ----------------------------------------------------CCCCEEEccchhcccccccccccccccC
Confidence                                                                24579999999986543       1234


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+..+.+..|.++..++.......
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~  260 (351)
T 3mi9_A          187 NRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN------TEQHQLALISQLCGSITPEVWPNVDNYE  260 (351)
T ss_dssp             SSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGCG
T ss_pred             CcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCChhhccccccch
Confidence            45678999999999874 5899999999999999999999999876      5788899999999998877655433222


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      .+..... ..    .........+..     ...+..+.+||.+||++||++|||++|+++||||.....+..
T Consensus       261 ~~~~~~~-~~----~~~~~~~~~~~~-----~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  323 (351)
T 3mi9_A          261 LYEKLEL-VK----GQKRKVKDRLKA-----YVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSD  323 (351)
T ss_dssp             GGTSSCC-CS----SCCCCHHHHHHH-----HHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCCC
T ss_pred             hhccccc-cc----ccccCHHHHhhh-----ccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCccc
Confidence            1111000 00    000011111111     112457899999999999999999999999999987655443

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.8e-34  Score=274.56  Aligned_cols=213  Identities=26%  Similarity=0.441  Sum_probs=163.1

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||++++|.+++...  ....+++..++.++.||+.||.|||++ ||+||||||+|||++..                
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NILl~~~----------------  192 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPD----------------  192 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEEETT----------------
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChhhEEEeCC----------------
Confidence            58999977887776642  235699999999999999999999995 99999999999999431                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                             ...++|+|||.+....  .......
T Consensus       193 -------------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~  217 (420)
T 1j1b_A          193 -------------------------------------------------------TAVLKLCDFGSAKQLVRGEPNVSYI  217 (420)
T ss_dssp             -------------------------------------------------------TTEEEECCCTTCEECCTTCCCCSCC
T ss_pred             -------------------------------------------------------CCeEEeccchhhhhcccCCCceeee
Confidence                                                                   2368999999996543  2344567


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +|+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.      +..+++..+.+.+|.++.+.+........-+
T Consensus       218 ~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~------~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~  291 (420)
T 1j1b_A          218 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD------SGVDQLVEIIKVLGTPTREQIREMNPNYTEF  291 (420)
T ss_dssp             SCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCSCCHHHHHHHCSCCCCC
T ss_pred             eCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHhhChhhhhh
Confidence            89999999999875 7999999999999999999999999876      5778999999999988776554321110000


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                          .+.   ......+...      +....+..+.+||.+||++||++|||+.|+++||||.......
T Consensus       292 ----~~p---~~~~~~~~~~------~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          292 ----KFP---QIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPN  347 (420)
T ss_dssp             ----CCC---CCCCCCHHHH------SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCTT
T ss_pred             ----ccC---ccCCCCHHHh------cCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccccccc
Confidence                000   0000111222      2233467899999999999999999999999999998775544

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.5e-34  Score=270.58  Aligned_cols=213  Identities=29%  Similarity=0.491  Sum_probs=162.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++..    .++...+..++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       124 lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIll~--------------------  178 (371)
T 4exu_A          124 LVMPFMQTDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPGNLAVN--------------------  178 (371)
T ss_dssp             EEEECCCEEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC--------------------
T ss_pred             EEEccccccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCcCHHHeEEC--------------------
Confidence            5899998899887743    389999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........+|+.
T Consensus       179 ----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~t~~  206 (371)
T 4exu_A          179 ----------------------------------------------------EDCELKILDFGLARHADAEMTGYVVTRW  206 (371)
T ss_dssp             ----------------------------------------------------TTCCEEECSTTCC--------CTTCCCT
T ss_pred             ----------------------------------------------------CCCCEEEEecCcccccccCcCCcccCcc
Confidence                                                                3457999999999877766667788999


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      |+|||++.+ ..++.++|||||||++|+|++|..||.+.      +..+.+..+....|.++.++...........    
T Consensus       207 y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----  276 (371)
T 4exu_A          207 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------DYLDQLTQILKVTGVPGTEFVQKLNDKAAKS----  276 (371)
T ss_dssp             TSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCHHHHTTCSCHHHHH----
T ss_pred             ccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCcHHHHHHhhhhhhhh----
Confidence            999999987 67999999999999999999999999876      6788999999999999988876543221000    


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      ............+...       ....+..+.+||++||++||++|||++|+++||||+....+..+.
T Consensus       277 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~~~  337 (371)
T 4exu_A          277 YIQSLPQTPRKDFTQL-------FPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEEET  337 (371)
T ss_dssp             HHHHSCCCCCCCHHHH-------STTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCGGGCC
T ss_pred             hhhccCCCcchhHHHh-------ccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCCccccc
Confidence            0000000000011111       123467899999999999999999999999999999876554443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=3.2e-34  Score=262.67  Aligned_cols=209  Identities=27%  Similarity=0.463  Sum_probs=164.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.......++...+..++.||+.||.|||++ |++||||||+||+++                    
T Consensus        96 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-gi~H~dlkp~Nili~--------------------  154 (326)
T 1blx_A           96 LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVT--------------------  154 (326)
T ss_dssp             EEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCCHHHeEEc--------------------
Confidence            58999977999999887656699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       155 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  182 (326)
T 1blx_A          155 ----------------------------------------------------SSGQIKLADFGLARIYSFQMALTSVVVT  182 (326)
T ss_dssp             ----------------------------------------------------TTCCEEECSCCSCCCCCGGGGGCCCCCC
T ss_pred             ----------------------------------------------------CCCCEEEecCcccccccCCCCccccccc
Confidence                                                                245799999999865442  23445789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC-CCccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA-QSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~  237 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+...+|.++...+.... .....+..
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  256 (326)
T 1blx_A          183 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS  256 (326)
T ss_dssp             CTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCC
T ss_pred             cceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHHHcCCCCcccCccccccchhhhcc
Confidence            9999999999999999999999999999999999999876      5677888888888876654432211 11111110


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      ...         ....       ......+..+.+||.+||..||++|||+.|+++||||.......
T Consensus       257 ~~~---------~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          257 KSA---------QPIE-------KFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             CCC---------CCGG-------GTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             cCc---------chhh-------hccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence            000         0000       12233467889999999999999999999999999999876554

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=2.5e-34  Score=267.14  Aligned_cols=219  Identities=26%  Similarity=0.404  Sum_probs=167.8

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHH--hhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLH--RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH--~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||++++|.+.+...  ....++...+..++.|++.||.|||  +. ||+||||||+||+++..              
T Consensus       103 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~-~ivH~Dlkp~NIll~~~--------------  167 (360)
T 3e3p_A          103 VVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV-NVCHRDIKPHNVLVNEA--------------  167 (360)
T ss_dssp             EEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT-CCBCSCCCGGGEEEETT--------------
T ss_pred             EEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC-CeecCcCCHHHEEEeCC--------------
Confidence            58999966776655432  2345889999999999999999999  85 99999999999999431              


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--cccc
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAE  154 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~  154 (329)
                                                                               ...++|+|||.+.....  ....
T Consensus       168 ---------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~  190 (360)
T 3e3p_A          168 ---------------------------------------------------------DGTLKLCDFGSAKKLSPSEPNVA  190 (360)
T ss_dssp             ---------------------------------------------------------TTEEEECCCTTCBCCCTTSCCCS
T ss_pred             ---------------------------------------------------------CCcEEEeeCCCceecCCCCCccc
Confidence                                                                     34799999999966543  3344


Q ss_pred             CCCCCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.      +....+..+.+.+|.++.+++........
T Consensus       191 ~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
T 3e3p_A          191 YICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD------NSAGQLHEIVRVLGCPSREVLRKLNPSHT  264 (360)
T ss_dssp             TTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHHHCTTCC
T ss_pred             ccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC------ChHHHHHHHHHHcCCCCHHHHHhcccchh
Confidence            57899999999997754 899999999999999999999999876      67889999999999999888765433322


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      .++....       ........+   .......+..+.+||.+||++||++|||+.|+++||||+....+....
T Consensus       265 ~~~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~  328 (360)
T 3e3p_A          265 DVDLYNS-------KGIPWSNVF---SDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDPATKL  328 (360)
T ss_dssp             CGGGGCC-------CCCCHHHHT---TTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTTCCC
T ss_pred             hcccccc-------ccCCccccc---chhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCccccC
Confidence            2111100       000111111   112334578999999999999999999999999999999886655443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=9.4e-35  Score=270.20  Aligned_cols=182  Identities=26%  Similarity=0.399  Sum_probs=152.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++....  .+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       118 lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  175 (350)
T 1rdq_E          118 MVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLID-------------------  175 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CcccccCccceEEEC-------------------
Confidence            589999 899999998763  499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+..........+||+
T Consensus       176 -----------------------------------------------------~~g~~kL~DFg~a~~~~~~~~~~~gt~  202 (350)
T 1rdq_E          176 -----------------------------------------------------QQGYIQVTDFGFAKRVKGRTWTLCGTP  202 (350)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECSSCBCCCEECG
T ss_pred             -----------------------------------------------------CCCCEEEcccccceeccCCcccccCCc
Confidence                                                                 345799999999987776666678999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..++.++|+|||||++|+|++|..||...      +.......+.                         
T Consensus       203 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~------~~~~~~~~i~-------------------------  251 (350)
T 1rdq_E          203 EALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD------QPIQIYEKIV-------------------------  251 (350)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH-------------------------
T ss_pred             cccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC------CHHHHHHHHH-------------------------
Confidence            999999999999999999999999999999999999765      2223333222                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~  305 (329)
                                       .....++...+..+.+||++||+.||++|++     +.|+++||||...+|..-
T Consensus       252 -----------------~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~  305 (350)
T 1rdq_E          252 -----------------SGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI  305 (350)
T ss_dssp             -----------------HCCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHH
T ss_pred             -----------------cCCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCCHHHH
Confidence                             1122234445678999999999999999998     999999999998876443

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.7e-35  Score=277.12  Aligned_cols=213  Identities=30%  Similarity=0.510  Sum_probs=153.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||+++|.+++..    .++...+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus       107 lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~NIl~~--------------------  161 (371)
T 2xrw_A          107 IVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  161 (371)
T ss_dssp             EEEECCSEEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC--------------------
T ss_pred             EEEEcCCCCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHC-CeecccCCHHHEEEc--------------------
Confidence            5899997789888863    389999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~~  158 (329)
                                                                          ....++|+|||.+......  .....||
T Consensus       162 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt  189 (371)
T 2xrw_A          162 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  189 (371)
T ss_dssp             ----------------------------------------------------TTSCEEECCCCC----------------
T ss_pred             ----------------------------------------------------CCCCEEEEEeecccccccccccCCceec
Confidence                                                                2457999999999665432  3445789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc-cccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK-DYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~-~~~~~  237 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+.+.+|.+++.+........ .+...
T Consensus       190 ~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  263 (371)
T 2xrw_A          190 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT------DHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVEN  263 (371)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHS
T ss_pred             CCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhh
Confidence            9999999999999999999999999999999999999876      5778888898888888777665432211 11111


Q ss_pred             cCchhhhccccccchhHHHhhhc-C----CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKY-R----FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      .....      ...+........ +    .....+..+.+||++||++||++|||++|+++||||+....
T Consensus       264 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~~  327 (371)
T 2xrw_A          264 RPKYA------GYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYD  327 (371)
T ss_dssp             SCCCC------CCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTTCC
T ss_pred             Ccccc------ccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhhcC
Confidence            11000      001111111100 0    01223678999999999999999999999999999986544

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2e-34  Score=270.82  Aligned_cols=210  Identities=26%  Similarity=0.457  Sum_probs=163.5

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||||+++|.+.+...  ....++...++.++.||+.||.|||++ ||+||||||+||+++.                 
T Consensus       115 lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-gi~H~Dikp~Nil~~~-----------------  176 (383)
T 3eb0_A          115 VIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-GICHRDIKPQNLLVNS-----------------  176 (383)
T ss_dssp             EEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEEET-----------------
T ss_pred             EEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-cCccCccCHHHEEEcC-----------------
Confidence            58999977888877752  235699999999999999999999995 9999999999999942                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                            ....++|+|||.+....  .......
T Consensus       177 ------------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~  202 (383)
T 3eb0_A          177 ------------------------------------------------------KDNTLKLCDFGSAKKLIPSEPSVAYI  202 (383)
T ss_dssp             ------------------------------------------------------TTTEEEECCCTTCEECCTTSCCCCCC
T ss_pred             ------------------------------------------------------CCCcEEEEECCCCcccCCCCCCcCcc
Confidence                                                                  13479999999996543  3344567


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+. .++.++||||+||++|+|++|..||.+.      ...+++..+.+.+|.++.+.+........-+
T Consensus       203 ~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~  276 (383)
T 3eb0_A          203 CSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGE------TSIDQLVRIIQIMGTPTKEQMIRMNPHYTEV  276 (383)
T ss_dssp             CCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHHHCTTC--C
T ss_pred             cCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHHhCcccccc
Confidence            89999999999876 4899999999999999999999999876      6788999999999998876654322111000


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                          .+   ...........      ++...+..+.+||.+||++||++|||+.|+++||||+...
T Consensus       277 ----~~---~~~~~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (383)
T 3eb0_A          277 ----RF---PTLKAKDWRKI------LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLR  329 (383)
T ss_dssp             ----CC---CCCCCCCHHHH------SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHH
T ss_pred             ----cC---CccCcccHHhh------CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHH
Confidence                00   00000111222      2444577899999999999999999999999999998753

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=7.8e-35  Score=269.40  Aligned_cols=182  Identities=26%  Similarity=0.432  Sum_probs=149.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  +.+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        82 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  139 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLMLD-------------------  139 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCCHHHEEEC-------------------
Confidence            589999 89999999876  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||++....   ......+
T Consensus       140 -----------------------------------------------------~~g~vkL~DFG~a~~~~~~~~~~~~~~  166 (337)
T 1o6l_A          140 -----------------------------------------------------KDGHIKITDFGLCKEGISDGATMKTFC  166 (337)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCBCSCCTTCCBCCCE
T ss_pred             -----------------------------------------------------CCCCEEEeeccchhhcccCCCcccccc
Confidence                                                                 34579999999986432   2344567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||...      +.......+.                      
T Consensus       167 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~------~~~~~~~~i~----------------------  218 (337)
T 1o6l_A          167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ------DHERLFELIL----------------------  218 (337)
T ss_dssp             ECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH----------------------
T ss_pred             cChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999999999999999999999999999999764      2222222221                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~  305 (329)
                                          .....++...+..+.+||.+||+.||++|+     ++.|+++||||...+|..-
T Consensus       219 --------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~  272 (337)
T 1o6l_A          219 --------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDV  272 (337)
T ss_dssp             --------------------HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             --------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHHHH
Confidence                                112223444567899999999999999999     9999999999998876543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=8.6e-35  Score=269.94  Aligned_cols=182  Identities=31%  Similarity=0.459  Sum_probs=149.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        95 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  152 (345)
T 1xjd_A           95 FVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILLD-------------------  152 (345)
T ss_dssp             EEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCChhhEEEC-------------------
Confidence            589999 899999998763  499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||++....   ......+
T Consensus       153 -----------------------------------------------------~~g~vkL~DFG~a~~~~~~~~~~~~~~  179 (345)
T 1xjd_A          153 -----------------------------------------------------KDGHIKIADFGMCKENMLGDAKTNTFC  179 (345)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCBCCCCTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEeEChhhhhcccCCCcccCCC
Confidence                                                                 34579999999986432   2345568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.      +.......+..                     
T Consensus       180 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~------~~~~~~~~i~~---------------------  232 (345)
T 1xjd_A          180 GTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ------DEEELFHSIRM---------------------  232 (345)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH---------------------
T ss_pred             CCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC------CHHHHHHHHHh---------------------
Confidence            899999999999999999999999999999999999999765      22333322211                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH-HHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~-ell~hpwf~~~~~~~~  305 (329)
                                           ....++...+..+.+||.+||+.||++||++. |+++||||...+|..-
T Consensus       233 ---------------------~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~w~~l  281 (345)
T 1xjd_A          233 ---------------------DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEEL  281 (345)
T ss_dssp             ---------------------CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHHHH
T ss_pred             ---------------------CCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCCCHHHH
Confidence                                 11122333467899999999999999999998 9999999999876433

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.6e-34  Score=268.93  Aligned_cols=182  Identities=24%  Similarity=0.376  Sum_probs=150.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++..++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus        98 lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll--------------------  154 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVML--------------------  154 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE--------------------
T ss_pred             EEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CEEeccCCHHHEEE--------------------
Confidence            589999 899999998763  499999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....++|+|||++....   ......+
T Consensus       155 ----------------------------------------------------~~~g~vkL~DFG~a~~~~~~~~~~~~~~  182 (353)
T 2i0e_A          155 ----------------------------------------------------DSEGHIKIADFGMCKENIWDGVTTKTFC  182 (353)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCBCCCCTTCCBCCCC
T ss_pred             ----------------------------------------------------cCCCcEEEEeCCcccccccCCccccccc
Confidence                                                                334579999999986532   2345567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.      +.......|.                      
T Consensus       183 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~------~~~~~~~~i~----------------------  234 (353)
T 2i0e_A          183 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE------DEDELFQSIM----------------------  234 (353)
T ss_dssp             SCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH----------------------
T ss_pred             CCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999999999999999999999999999999765      2333333332                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~  305 (329)
                                          .....++...+..+.+||++||+.||++||+     +.|+++||||+.++|..-
T Consensus       235 --------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l  288 (353)
T 2i0e_A          235 --------------------EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL  288 (353)
T ss_dssp             --------------------HCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHH
T ss_pred             --------------------hCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHHHH
Confidence                                1222234445678999999999999999994     699999999999877544

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-34  Score=263.01  Aligned_cols=213  Identities=28%  Similarity=0.439  Sum_probs=155.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..++...+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        79 lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~lH~~-~ivH~dlkp~Nil~~-------------------  136 (311)
T 4agu_A           79 LVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFCHKH-NCIHRDVKPENILIT-------------------  136 (311)
T ss_dssp             EEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCChhhEEEc-------------------
Confidence            589999 78888887765  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       137 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  163 (311)
T 4agu_A          137 -----------------------------------------------------KHSVIKLCDFGFARLLTGPSDYYDDEV  163 (311)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECC----------
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCchhccCcccccCCCc
Confidence                                                                 245799999999965542   223457


Q ss_pred             CCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+ ..++.++||||+||++|+|++|..||.+.      ...+.+..+...++.+++.....+.... ++
T Consensus       164 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  236 (311)
T 4agu_A          164 ATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK------SDVDQLYLIRKTLGDLIPRHQQVFSTNQ-YF  236 (311)
T ss_dssp             --GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHHHHHTCG-GG
T ss_pred             CCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhccccccccccccccc-cc
Confidence            7889999999987 56899999999999999999999999876      5778888888999987766543322111 11


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      .... ....  .........       ....+..+.+||++||++||++|||+.|+++||||+...+..+
T Consensus       237 ~~~~-~~~~--~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~  296 (311)
T 4agu_A          237 SGVK-IPDP--EDMEPLELK-------FPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIREIED  296 (311)
T ss_dssp             TTCC-CCCC--SSCCCHHHH-------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC----
T ss_pred             ccCc-CCCc--cccchhhhh-------cccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhccCHHH
Confidence            1000 0000  000000111       1234567899999999999999999999999999998765543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.7e-34  Score=269.45  Aligned_cols=210  Identities=30%  Similarity=0.489  Sum_probs=163.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+++++|.+++...   .++...+..++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       107 iv~e~~~~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~--------------------  162 (364)
T 3qyz_A          107 IVQDLMETDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLN--------------------  162 (364)
T ss_dssp             EEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEEcccCcCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCChHhEEEC--------------------
Confidence            58999988999999764   499999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------ccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~~  154 (329)
                                                                          ....++|+|||.+......      ...
T Consensus       163 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  190 (364)
T 3qyz_A          163 ----------------------------------------------------TTCDLKICDFGLARVADPDHDHTGFLTE  190 (364)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEECCGGGCBCCTTCC
T ss_pred             ----------------------------------------------------CCCCEEEEeCcceEecCCCCCccccccc
Confidence                                                                3457999999999655422      234


Q ss_pred             CCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.      ...+.+..+...+|.++.+.+........
T Consensus       191 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  264 (364)
T 3qyz_A          191 YVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK------HYLDQLNHILGILGSPSQEDLNCIINLKA  264 (364)
T ss_dssp             CCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCS------SGGGHHHHHHHHHCSCCHHHHHTCCCHHH
T ss_pred             cccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCC------ChHHHHHHHHHHhCCCCHHHHHHhhhhhH
Confidence            5789999999997754 5899999999999999999999999876      67889999999999988877654332211


Q ss_pred             --ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          234 --YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                        +.....      ..........       ....+..+.+||.+||++||++|||+.|+++||||+....+..
T Consensus       265 ~~~~~~~~------~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~~~~  325 (364)
T 3qyz_A          265 RNYLLSLP------HKNKVPWNRL-------FPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSD  325 (364)
T ss_dssp             HHHHHTSC------CCCCCCHHHH-------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCCGGG
T ss_pred             HHHHHhcC------CccCCCHHHh-------CCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhccCccc
Confidence              000000      0000011111       1233568999999999999999999999999999998754443

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=2.2e-34  Score=267.14  Aligned_cols=188  Identities=27%  Similarity=0.402  Sum_probs=149.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        87 lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  144 (345)
T 3a8x_A           87 FVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLHER-GIIYRDLKLDNVLLD-------------------  144 (345)
T ss_dssp             EEECCCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEEC-------------------
Confidence            589999 89999999876  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   ......+
T Consensus       145 -----------------------------------------------------~~g~~kL~DFG~a~~~~~~~~~~~~~~  171 (345)
T 3a8x_A          145 -----------------------------------------------------SEGHIKLTDYGMCKEGLRPGDTTSTFC  171 (345)
T ss_dssp             -----------------------------------------------------TTSCEEECCGGGCBCSCCTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEEeccccccccCCCCcccccC
Confidence                                                                 34579999999986432   2345568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCC--CchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFC--EDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||.........  .....+                        
T Consensus       172 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~------------------------  227 (345)
T 3a8x_A          172 GTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL------------------------  227 (345)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHH------------------------
T ss_pred             CCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHH------------------------
Confidence            899999999999999999999999999999999999999754211000  000000                        


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH------HHHhcCCCcCCCCCCh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA------QQCLQHPWLSLRNSTR  304 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta------~ell~hpwf~~~~~~~  304 (329)
                                       ...+......++...+..+.+||.+||+.||++||++      .|+++||||...+|..
T Consensus       228 -----------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~  286 (345)
T 3a8x_A          228 -----------------FQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDM  286 (345)
T ss_dssp             -----------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHH
T ss_pred             -----------------HHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHH
Confidence                             1122222333455567789999999999999999995      8999999999887644

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=264.65  Aligned_cols=187  Identities=30%  Similarity=0.501  Sum_probs=148.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..++...+..++.||+.||.|||+. ||+||||||+||++....                
T Consensus        91 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~NIll~~~~----------------  151 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRN----------------  151 (326)
T ss_dssp             EEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCSS----------------
T ss_pred             EEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHC-CeEcCCCCHHHEEEecCC----------------
Confidence            589999 89999999765  4599999999999999999999995 999999999999994320                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          .....++|+|||.+....  .......|
T Consensus       152 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  179 (326)
T 2y0a_A          152 ----------------------------------------------------VPKPRIKIIDFGLAHKIDFGNEFKNIFG  179 (326)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCTTCEECCTTSCCCCCCS
T ss_pred             ----------------------------------------------------CCCCCEEEEECCCCeECCCCCccccccC
Confidence                                                                112379999999996654  23445678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+......++...             
T Consensus       180 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~-------------  240 (326)
T 2y0a_A          180 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD------TKQETLANVSAVNYEFEDEY-------------  240 (326)
T ss_dssp             CTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHHTCCCCCHHH-------------
T ss_pred             CcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC------CHHHHHHHHHhcCCCcCccc-------------
Confidence            99999999999999999999999999999999999999765      33344444332211211111             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                               ....+..+.+||++||+.||++|||+.|+++||||....+
T Consensus       241 -------------------------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  280 (326)
T 2y0a_A          241 -------------------------FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDT  280 (326)
T ss_dssp             -------------------------HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCCSH
T ss_pred             -------------------------cccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCCcc
Confidence                                     0122567899999999999999999999999999997654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=273.37  Aligned_cols=184  Identities=26%  Similarity=0.405  Sum_probs=146.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+...  ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        87 lv~E~~~gg~L~~~i~~~--~~~~e~~~~~i~~qil~aL~~lH~~-givHrDlKp~NIll~~~-----------------  146 (444)
T 3soa_A           87 LIFDLVTGGELFEDIVAR--EYYSEADASHCIQQILEAVLHCHQM-GVVHRNLKPENLLLASK-----------------  146 (444)
T ss_dssp             EEECCCBCCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSSTTEEESBS-----------------
T ss_pred             EEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEecc-----------------
Confidence            589999 88999999876  3499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                          .....++|+|||.+......   .....
T Consensus       147 ----------------------------------------------------~~~~~vkL~DFG~a~~~~~~~~~~~~~~  174 (444)
T 3soa_A          147 ----------------------------------------------------LKGAAVKLADFGLAIEVEGEQQAWFGFA  174 (444)
T ss_dssp             ----------------------------------------------------STTCCEEECCCSSCBCCCTTCCBCCCSC
T ss_pred             ----------------------------------------------------CCCCcEEEccCceeEEecCCCceeeccc
Confidence                                                                12357999999999665432   23467


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++||||+||++|+|++|..||.+.      +.......+..-...+|..             
T Consensus       175 gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~-------------  235 (444)
T 3soa_A          175 GTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE------DQHRLYQQIKAGAYDFPSP-------------  235 (444)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHTCCCCCTT-------------
T ss_pred             CCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHhCCCCCCcc-------------
Confidence            899999999999989999999999999999999999999765      2333333332211111100             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                               .....+..+.+||.+||+.||++|||+.|+|+||||+..
T Consensus       236 -------------------------~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          236 -------------------------EWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             -------------------------TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             -------------------------ccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence                                     012335689999999999999999999999999999753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=4.8e-34  Score=273.62  Aligned_cols=184  Identities=27%  Similarity=0.424  Sum_probs=150.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||| |++|.+++...  ..++...++.++.||+.||+|||+ + ||+||||||+||+++                  
T Consensus       225 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~~-giiHrDlkp~NIll~------------------  283 (446)
T 4ejn_A          225 FVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK-NVVYRDLKLENLMLD------------------  283 (446)
T ss_dssp             EEECCCSSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHHT-CCCCCCCCGGGEEEC------------------
T ss_pred             EEEeeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhcC-CEEECCCCHHHEEEC------------------
Confidence            589999 88999999876  359999999999999999999997 5 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEE  155 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~  155 (329)
                                                                            ....++|+|||++....   ......
T Consensus       284 ------------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~  309 (446)
T 4ejn_A          284 ------------------------------------------------------KDGHIKITDFGLCKEGIKDGATMKTF  309 (446)
T ss_dssp             ------------------------------------------------------SSSCEEECCCCCCCTTCC-----CCS
T ss_pred             ------------------------------------------------------CCCCEEEccCCCceeccCCCcccccc
Confidence                                                                  34579999999986432   234456


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +||+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +.......+.                     
T Consensus       310 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~------~~~~~~~~i~---------------------  362 (446)
T 4ejn_A          310 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ------DHEKLFELIL---------------------  362 (446)
T ss_dssp             SSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH---------------------
T ss_pred             cCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC------CHHHHHHHHH---------------------
Confidence            7899999999999999999999999999999999999999765      2222322221                     


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~  307 (329)
                                           .....++...+..+.+||.+||+.||++||     |+.|+++||||...++.....
T Consensus       363 ---------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~~~  418 (446)
T 4ejn_A          363 ---------------------MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYE  418 (446)
T ss_dssp             ---------------------HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHT
T ss_pred             ---------------------hCCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCCHHHHhh
Confidence                                 112223444567899999999999999999     999999999999987765443

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-34  Score=266.77  Aligned_cols=177  Identities=27%  Similarity=0.455  Sum_probs=143.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        86 lv~E~~~g~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~--------------------  142 (336)
T 3h4j_B           86 MVIEYAGGELFDYIVEK--KRMTEDEGRRFFQQIICAIEYCHRH-KIVHRDLKPENLLLD--------------------  142 (336)
T ss_dssp             EEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSTTTEEEC--------------------
T ss_pred             EEEECCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCchhhEEEc--------------------
Confidence            58999988999988876  3599999999999999999999996 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  .....+||
T Consensus       143 ----------------------------------------------------~~~~~kl~DFG~s~~~~~~~~~~~~~gt  170 (336)
T 3h4j_B          143 ----------------------------------------------------DNLNVKIADFGLSNIMTDGNFLKTSCGS  170 (336)
T ss_dssp             ----------------------------------------------------TTCCEEECCSSCTBTTTTSBTTCCCTTS
T ss_pred             ----------------------------------------------------CCCCEEEEEeccceeccCCcccccccCC
Confidence                                                                345799999999865443  33456789


Q ss_pred             CCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +.|+|||++.+..+ +.++|||||||++|+|++|..||........                               +. 
T Consensus       171 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------------------------~~-  218 (336)
T 3h4j_B          171 PNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------------------------FK-  218 (336)
T ss_dssp             TTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------------------------BC-
T ss_pred             cCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------------------------HH-
Confidence            99999999988776 7899999999999999999999976421000                               00 


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                      .+.......+...+..+.+||++||+.||.+|||+.|+++||||+..
T Consensus       219 ----------------~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  265 (336)
T 3h4j_B          219 ----------------KVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN  265 (336)
T ss_dssp             ----------------CCCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTT
T ss_pred             ----------------HHHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhccC
Confidence                            00011122344456789999999999999999999999999999864

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=5.2e-34  Score=270.44  Aligned_cols=186  Identities=24%  Similarity=0.406  Sum_probs=149.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...   .+++..++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus       146 lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~-givHrDLKp~NILl--------------------  201 (410)
T 3v8s_A          146 MVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSM-GFIHRDVKPDNMLL--------------------  201 (410)
T ss_dssp             EEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHeeE--------------------
Confidence            689999 99999998763   489999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                          +....++|+|||.+.....    .....
T Consensus       202 ----------------------------------------------------~~~g~ikL~DFG~a~~~~~~~~~~~~~~  229 (410)
T 3v8s_A          202 ----------------------------------------------------DKSGHLKLADFGTCMKMNKEGMVRCDTA  229 (410)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTSEEECCSC
T ss_pred             ----------------------------------------------------CCCCCEEEeccceeEeeccCCcccccCC
Confidence                                                                3356799999999965543    23456


Q ss_pred             CCCCCCcchHHhhcCC----CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          156 IQTRQYRAPEVILRAG----YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~----~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      +||+.|+|||++.+..    ++.++|+|||||++|+|++|..||.+.      +.......|......+           
T Consensus       230 ~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~------~~~~~~~~i~~~~~~~-----------  292 (410)
T 3v8s_A          230 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD------SLVGTYSKIMNHKNSL-----------  292 (410)
T ss_dssp             CSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHTHHHHC-----------
T ss_pred             cCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC------ChhhHHHHHHhccccc-----------
Confidence            8999999999998765    889999999999999999999999765      3333333332211000           


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChhh
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                                 ..+.....+..+.+||++||+.+|.+  |+++.||++||||+..+|....
T Consensus       293 ---------------------------~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~~w~~~~  342 (410)
T 3v8s_A          293 ---------------------------TFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWET  342 (410)
T ss_dssp             ---------------------------CCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCSSCCSTT
T ss_pred             ---------------------------cCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCCCHHHHh
Confidence                                       00111234678999999999999988  9999999999999998876443

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=263.52  Aligned_cols=210  Identities=29%  Similarity=0.500  Sum_probs=160.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++..    .++...+..++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       106 lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~-~ivH~dlkp~NIl~~--------------------  160 (353)
T 3coi_A          106 LVMPFMQTDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSA-GVVHRDLKPGNLAVN--------------------  160 (353)
T ss_dssp             EEEECCSEEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEEC--------------------
T ss_pred             EEeccccCCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEeEC--------------------
Confidence            5899997788877643    389999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++|+|||.+...........+++.
T Consensus       161 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~t~~  188 (353)
T 3coi_A          161 ----------------------------------------------------EDCELKILDFGLARHADAEMTGYVVTRW  188 (353)
T ss_dssp             ----------------------------------------------------TTCCEEECSTTCTTC--------CCSBC
T ss_pred             ----------------------------------------------------CCCcEEEeecccccCCCCCccccccCcC
Confidence                                                                2457999999999776665566688999


Q ss_pred             CcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--cccCc
Q 020248          161 YRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYFDR  237 (329)
Q Consensus       161 y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~  237 (329)
                      |+|||++.+ ..++.++|||||||++|+|++|..||.+.      +..+.+..+....|.++.++........  .+...
T Consensus       189 y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (353)
T 3coi_A          189 YRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK------DYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQS  262 (353)
T ss_dssp             CSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSS------CHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHT
T ss_pred             cCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHh
Confidence            999999987 57899999999999999999999999876      5678899999999999888875543221  01000


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ...      .....+       .......+..+.+||.+||+.||++|||++|+++||||+....+..+
T Consensus       263 ~~~------~~~~~~-------~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~~  318 (353)
T 3coi_A          263 LPQ------TPRKDF-------TQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDPEEE  318 (353)
T ss_dssp             SCB------CSSCCT-------TTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCGGGC
T ss_pred             CcC------CCCccH-------HHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccCcccc
Confidence            000      000000       01123446789999999999999999999999999999987655443

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3e-34  Score=261.59  Aligned_cols=188  Identities=20%  Similarity=0.255  Sum_probs=131.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhh-------CCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-------LGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~-------~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      |||||| |++|.+++...   .++.+.+..++.|++.||+|||++       .+|+||||||+|||+             
T Consensus        78 lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl-------------  141 (303)
T 3hmm_A           78 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV-------------  141 (303)
T ss_dssp             EEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEE-------------
T ss_pred             EEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEE-------------
Confidence            689999 89999999864   489999999999999999999972       189999999999999             


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  151 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-  151 (329)
                                                                                 +....+||+|||+|...... 
T Consensus       142 -----------------------------------------------------------~~~~~~Ki~DFGla~~~~~~~  162 (303)
T 3hmm_A          142 -----------------------------------------------------------KKNGTCCIADLGLAVRHDSAT  162 (303)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEEEETTT
T ss_pred             -----------------------------------------------------------CCCCCEEEEeCCCCccccCCC
Confidence                                                                       33568999999998654321 


Q ss_pred             ------cccCCCCCCCcchHHhhcC------CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCC--CC---chHHHHHHH
Q 020248          152 ------FAEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGF--CE---DEDHLALMM  214 (329)
Q Consensus       152 ------~~~~~~~~~y~aPE~~~~~------~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~--~~---~~~~l~~i~  214 (329)
                            ....+||+.|+|||++.+.      .++.++|||||||++|||++|..||........  .+   .......+.
T Consensus       163 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~  242 (303)
T 3hmm_A          163 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMR  242 (303)
T ss_dssp             TEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHH
T ss_pred             CceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHH
Confidence                  2235799999999999764      367899999999999999999988865432110  00   000001111


Q ss_pred             HHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          215 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       215 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                      ...-.                  .+     .++   ....     ...+......+.+||.+||+.||++|||+.||++.
T Consensus       243 ~~~~~------------------~~-----~rp---~~p~-----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          243 KVVCE------------------QK-----LRP---NIPN-----RWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             HHHTT------------------SC-----CCC---CCCG-----GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             HHHhc------------------cc-----CCC---CCCc-----cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            00000                  00     000   0000     00122345688999999999999999999999863

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.3e-34  Score=263.00  Aligned_cols=209  Identities=29%  Similarity=0.437  Sum_probs=161.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.|++.||.|||++ ||+||||||+||+++                    
T Consensus        89 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~--------------------  146 (346)
T 1ua2_A           89 LVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLLD--------------------  146 (346)
T ss_dssp             EEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEEcCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCCHHHEEEc--------------------
Confidence            589999779998887643 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.+.....   ......+
T Consensus       147 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  174 (346)
T 1ua2_A          147 ----------------------------------------------------ENGVLKLADFGLAKSFGSPNRAYTHQVV  174 (346)
T ss_dssp             ----------------------------------------------------TTCCEEECCCGGGSTTTSCCCCCCCSCC
T ss_pred             ----------------------------------------------------CCCCEEEEecccceeccCCcccCCcccc
Confidence                                                                245799999999965542   2344578


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+. .++.++|||||||++|+|++|.+||.+.      .....+..+.+..|.++...+........+..
T Consensus       175 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  248 (346)
T 1ua2_A          175 TRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD------SDLDQLTRIFETLGTPTEEQWPDMCSLPDYVT  248 (346)
T ss_dssp             CCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCC
T ss_pred             cccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHHHcCCCChhhhhhhccCccccc
Confidence            9999999999765 5899999999999999999999999876      57788888999888877655543332222211


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ... .      .......+       ....+..+.+||.+||+.||++|||+.|+++||||.....+
T Consensus       249 ~~~-~------~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~  301 (346)
T 1ua2_A          249 FKS-F------PGIPLHHI-------FSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  301 (346)
T ss_dssp             CCC-C------CCCCHHHH-------CTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             ccc-c------CCCChHHh-------hccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCC
Confidence            100 0      00011111       12346789999999999999999999999999999875433

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=6e-34  Score=272.07  Aligned_cols=186  Identities=20%  Similarity=0.390  Sum_probs=150.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||+. ||+||||||+|||+                    
T Consensus       151 lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILl--------------------  208 (437)
T 4aw2_A          151 LVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQL-HYVHRDIKPDNILM--------------------  208 (437)
T ss_dssp             EEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeEecccCHHHeeE--------------------
Confidence            689999 999999998632 4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                          +....++|+|||++.....    .....
T Consensus       209 ----------------------------------------------------~~~g~vkL~DFGla~~~~~~~~~~~~~~  236 (437)
T 4aw2_A          209 ----------------------------------------------------DMNGHIRLADFGSCLKLMEDGTVQSSVA  236 (437)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTSCEECCSC
T ss_pred             ----------------------------------------------------cCCCCEEEcchhhhhhcccCCCcccccc
Confidence                                                                3356799999999865432    22345


Q ss_pred             CCCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          156 IQTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       156 ~~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      +||+.|+|||++.     ...++.++|||||||++|+|++|..||.+.      +.......|....+.           
T Consensus       237 ~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~------~~~~~~~~i~~~~~~-----------  299 (437)
T 4aw2_A          237 VGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE------SLVETYGKIMNHKER-----------  299 (437)
T ss_dssp             CSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHTHHHH-----------
T ss_pred             cCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC------ChhHHHHhhhhcccc-----------
Confidence            7999999999997     456899999999999999999999999865      334444444321110           


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCC---hhhHHHHHHHHhhccCCCCCC--CcCHHHHhcCCCcCCCCCChh
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFS---ETDAREFAEFLVPLLDFTPEK--RPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dll~~~L~~dP~~--R~ta~ell~hpwf~~~~~~~~  305 (329)
                                                   ..++   ...+..+.+||++||+.+|++  |+++.|+++||||++++|..-
T Consensus       300 -----------------------------~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i~w~~l  350 (437)
T 4aw2_A          300 -----------------------------FQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNI  350 (437)
T ss_dssp             -----------------------------CCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTCCTTTG
T ss_pred             -----------------------------ccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCCCHHHH
Confidence                                         0111   224678999999999999988  999999999999999988765


Q ss_pred             h
Q 020248          306 E  306 (329)
Q Consensus       306 ~  306 (329)
                      .
T Consensus       351 ~  351 (437)
T 4aw2_A          351 R  351 (437)
T ss_dssp             G
T ss_pred             h
Confidence            4

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3e-34  Score=271.47  Aligned_cols=191  Identities=28%  Similarity=0.397  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......+++..+..++.||+.||.|||+. ||+||||||+||+++..                 
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~Nill~~~-----------------  197 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK-----------------  197 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSS-----------------
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCcCcceEEEecC-----------------
Confidence            589999 89999999876545699999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||++.....  .....+|
T Consensus       198 ----------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~~~~~g  225 (400)
T 1nxk_A          198 ----------------------------------------------------RPNAILKLTDFGFAKETTSHNSLTTPCY  225 (400)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECC----------
T ss_pred             ----------------------------------------------------CCCccEEEEecccccccCCCCccccCCC
Confidence                                                                1145799999999965542  2345678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||..........  .....+.  .|...        .       
T Consensus       226 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~--~~~~~i~--~~~~~--------~-------  286 (400)
T 1nxk_A          226 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP--GMKTRIR--MGQYE--------F-------  286 (400)
T ss_dssp             -CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCC--SHHHHHH--HTCCC--------C-------
T ss_pred             CCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccH--HHHHHHH--cCccc--------C-------
Confidence            999999999998899999999999999999999999997653211110  0111111  01000        0       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                           ........+.++.+||++||+.||++|||+.|+++||||....
T Consensus       287 ---------------------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~  329 (400)
T 1nxk_A          287 ---------------------PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  329 (400)
T ss_dssp             ---------------------CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTTT
T ss_pred             ---------------------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCCC
Confidence                                 0000123467899999999999999999999999999998643

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-34  Score=264.05  Aligned_cols=184  Identities=27%  Similarity=0.417  Sum_probs=146.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        78 lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-givH~Dlkp~NIl~~~~-----------------  138 (321)
T 1tki_A           78 MIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQTR-----------------  138 (321)
T ss_dssp             EEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSS-----------------
T ss_pred             EEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEccC-----------------
Confidence            589999 889999997643 3589999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......+
T Consensus       139 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~g  165 (321)
T 1tki_A          139 -----------------------------------------------------RSSTIKIIEFGQARQLKPGDNFRLLFT  165 (321)
T ss_dssp             -----------------------------------------------------SCCCEEECCCTTCEECCTTCEEEEEES
T ss_pred             -----------------------------------------------------CCCCEEEEECCCCeECCCCCccccccC
Confidence                                                                 135799999999965532  2334568


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+......++...+            
T Consensus       166 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~------------  227 (321)
T 1tki_A          166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE------TNQQIIENIMNAEYTFDEEAF------------  227 (321)
T ss_dssp             CGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHHTCCCCCHHHH------------
T ss_pred             ChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC------CHHHHHHHHHcCCCCCChhhh------------
Confidence            99999999999988999999999999999999999999765      334444444322111111100            


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                                ...+.++.+||++||..||++|||+.|+++||||+..
T Consensus       228 --------------------------~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~  264 (321)
T 1tki_A          228 --------------------------KEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             --------------------------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             --------------------------ccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccC
Confidence                                      1235688999999999999999999999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=4.8e-34  Score=268.60  Aligned_cols=221  Identities=21%  Similarity=0.292  Sum_probs=142.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+||++.                   
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~NIll~-------------------  162 (389)
T 3gni_B          103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-GYVHRSVKASHILIS-------------------  162 (389)
T ss_dssp             EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc-------------------
Confidence            589999 89999999987656799999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc----------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN----------  149 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~----------  149 (329)
                                                                           ....++|+|||.+....          
T Consensus       163 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  189 (389)
T 3gni_B          163 -----------------------------------------------------VDGKVYLSGLRSNLSMISHGQRQRVVH  189 (389)
T ss_dssp             -----------------------------------------------------TTCCEEECCGGGCEECEETTEECSCBC
T ss_pred             -----------------------------------------------------CCCCEEEcccccceeeccccccccccc
Confidence                                                                 34579999999874332          


Q ss_pred             cccccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhc
Q 020248          150 KQFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIG  227 (329)
Q Consensus       150 ~~~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  227 (329)
                      .......|++.|+|||++.+  ..++.++|||||||++|+|++|..||.+..      ....+..+  ..+.++..+...
T Consensus       190 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~~--~~~~~~~~~~~~  261 (389)
T 3gni_B          190 DFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP------ATQMLLEK--LNGTVPCLLDTS  261 (389)
T ss_dssp             CCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCC------STTHHHHC--------------
T ss_pred             cccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHH--hcCCCCcccccc
Confidence            11223467889999999988  579999999999999999999999997753      22222111  112222111100


Q ss_pred             CCCCcccc-------CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          228 GAQSKDYF-------DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       228 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ......+.       ...+....... ...............+...+..+.+||++||++||++|||+.|+|+||||+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~  340 (389)
T 3gni_B          262 TIPAEELTMSPSRSVANSGLSDSLTT-STPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQI  340 (389)
T ss_dssp             ---------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC
T ss_pred             cccccccccccccccccccccccccc-CccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHH
Confidence            00000000       00000000000 00000000000112344557789999999999999999999999999999987


Q ss_pred             CCC
Q 020248          301 NST  303 (329)
Q Consensus       301 ~~~  303 (329)
                      ...
T Consensus       341 ~~~  343 (389)
T 3gni_B          341 KRR  343 (389)
T ss_dssp             ---
T ss_pred             hhc
Confidence            653

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=8.3e-34  Score=266.00  Aligned_cols=182  Identities=25%  Similarity=0.345  Sum_probs=149.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus       116 lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll--------------------  172 (373)
T 2r5t_A          116 FVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPENILL--------------------  172 (373)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE--------------------
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEE--------------------
Confidence            589999 89999999876  3589999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....++|+|||++....   ......+
T Consensus       173 ----------------------------------------------------~~~g~ikL~DFG~a~~~~~~~~~~~~~~  200 (373)
T 2r5t_A          173 ----------------------------------------------------DSQGHIVLTDFGLCKENIEHNSTTSTFC  200 (373)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCCBCGGGBCCCCCCCSBS
T ss_pred             ----------------------------------------------------CCCCCEEEeeCccccccccCCCcccccc
Confidence                                                                334579999999986432   2345568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.      +.......|.                      
T Consensus       201 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~------~~~~~~~~i~----------------------  252 (373)
T 2r5t_A          201 GTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR------NTAEMYDNIL----------------------  252 (373)
T ss_dssp             CCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS------BHHHHHHHHH----------------------
T ss_pred             CCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999999999999999999999999999999765      2222322222                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH----HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA----QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta----~ell~hpwf~~~~~~~~  305 (329)
                                          .....++...+..+.+||.+||+.||++|+++    .|+++||||+.++|..-
T Consensus       253 --------------------~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l  305 (373)
T 2r5t_A          253 --------------------NKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDL  305 (373)
T ss_dssp             --------------------HSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHH
T ss_pred             --------------------hcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCCHHHH
Confidence                                12222334456789999999999999999997    68999999999887553

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1e-33  Score=259.60  Aligned_cols=195  Identities=27%  Similarity=0.460  Sum_probs=152.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||++....                
T Consensus        92 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~lH~~-~ivH~dikp~NIl~~~~~----------------  152 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNYLHTK-KIAHFDLKPENIMLLDKN----------------  152 (321)
T ss_dssp             EEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCTT----------------
T ss_pred             EEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCChHHEEEecCC----------------
Confidence            589999 89999999865  4599999999999999999999995 999999999999994320                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       153 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~g  180 (321)
T 2a2a_A          153 ----------------------------------------------------IPIPHIKLIDFGLAHEIEDGVEFKNIFG  180 (321)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCTTCEECCTTCCCCCCCS
T ss_pred             ----------------------------------------------------CCcCCEEEccCccceecCccccccccCC
Confidence                                                                1123689999999965543  2344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||.+.      .....+..+......++...             
T Consensus       181 t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~-------------  241 (321)
T 2a2a_A          181 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD------TKQETLANITSVSYDFDEEF-------------  241 (321)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHTTCCCCCHHH-------------
T ss_pred             CCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHhcccccChhh-------------
Confidence            99999999999999999999999999999999999999765      33344443332211111111             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNK  310 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~  310 (329)
                                               ....+..+.+||.+||+.||++|||+.|+++||||....+.....+++
T Consensus       242 -------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~~~~~~~~~~~  289 (321)
T 2a2a_A          242 -------------------------FSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRE  289 (321)
T ss_dssp             -------------------------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCSSHHHHHHHHH
T ss_pred             -------------------------hcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCCCccccccccc
Confidence                                     012356789999999999999999999999999999887666555443

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=8.1e-34  Score=265.01  Aligned_cols=184  Identities=29%  Similarity=0.434  Sum_probs=145.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+...  ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       105 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~NIll~~~-----------------  164 (362)
T 2bdw_A          105 LVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENLLLASK-----------------  164 (362)
T ss_dssp             EEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEESCS-----------------
T ss_pred             EEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHEEEecC-----------------
Confidence            589999 88999998765  3589999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       165 ----------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~g  192 (362)
T 2bdw_A          165 ----------------------------------------------------AKGAAVKLADFGLAIEVNDSEAWHGFAG  192 (362)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCBCCTTCCSCCCSCS
T ss_pred             ----------------------------------------------------CCCCCEEEeecCcceEecCCcccccCCC
Confidence                                                                1134699999999966553  2334578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +.......+..-.-.+|..              
T Consensus       193 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~------~~~~~~~~i~~~~~~~~~~--------------  252 (362)
T 2bdw_A          193 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE------DQHRLYAQIKAGAYDYPSP--------------  252 (362)
T ss_dssp             CTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCTT--------------
T ss_pred             CccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHhCCCCCCcc--------------
Confidence            99999999999999999999999999999999999999765      2333333332111111100              


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                              .....+..+.+||.+||+.||++|||+.|+++||||...
T Consensus       253 ------------------------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          253 ------------------------EWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             ------------------------GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHTH
T ss_pred             ------------------------cccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCCC
Confidence                                    011235688999999999999999999999999999753

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=9.9e-35  Score=272.37  Aligned_cols=175  Identities=18%  Similarity=0.270  Sum_probs=138.8

Q ss_pred             CcccccchhHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~-----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      |||||++++|.+++.....     ..++...+..++.||+.||+|||++ ||+||||||+||+++               
T Consensus       177 lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~---------------  240 (377)
T 3byv_A          177 FLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLD---------------  240 (377)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC---------------
T ss_pred             EEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEc---------------
Confidence            5899998899999987532     0133478888999999999999995 999999999999993               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccC
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE  155 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~  155 (329)
                                                                               ....++|+|||++..........
T Consensus       241 ---------------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~  263 (377)
T 3byv_A          241 ---------------------------------------------------------QRGGVFLTGFEHLVRDGARVVSS  263 (377)
T ss_dssp             ---------------------------------------------------------TTCCEEECCGGGCEETTCEEECC
T ss_pred             ---------------------------------------------------------CCCCEEEEechhheecCCcccCC
Confidence                                                                     24579999999998766666666


Q ss_pred             CCCCCCcchHHhhcC-----------CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          156 IQTRQYRAPEVILRA-----------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~-----------~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      .| +.|+|||++.+.           .++.++|||||||++|+|++|..||........                     
T Consensus       264 ~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~---------------------  321 (377)
T 3byv_A          264 VS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG---------------------  321 (377)
T ss_dssp             CC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC---------------------
T ss_pred             CC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc---------------------
Confidence            78 999999999987           899999999999999999999999976421000                     


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                 ...+.    ......+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       322 ---------------------------~~~~~----~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          322 ---------------------------SEWIF----RSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             ---------------------------SGGGG----SSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             ---------------------------hhhhh----hhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHH
Confidence                                       00000    00123356899999999999999999999999999998754

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.1e-33  Score=260.30  Aligned_cols=181  Identities=27%  Similarity=0.384  Sum_probs=145.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        98 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~-~ivH~Dlkp~Nill~-------------------  155 (327)
T 3a62_A           98 LILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQK-GIIYRDLKPENIMLN-------------------  155 (327)
T ss_dssp             EEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTTEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhC-CEEcccCCHHHeEEC-------------------
Confidence            589999 899999998763  489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       156 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  182 (327)
T 3a62_A          156 -----------------------------------------------------HQGHVKLTDFGLCKESIHDGTVTHTFC  182 (327)
T ss_dssp             -----------------------------------------------------TTSCEEECCCSCC----------CTTS
T ss_pred             -----------------------------------------------------CCCcEEEEeCCcccccccCCccccccC
Confidence                                                                 34579999999985432   2234457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+..                     
T Consensus       183 gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~------~~~~~~~~i~~---------------------  235 (327)
T 3a62_A          183 GTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE------NRKKTIDKILK---------------------  235 (327)
T ss_dssp             SCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHH---------------------
T ss_pred             CCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHh---------------------
Confidence            899999999999999999999999999999999999999765      23333333321                     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                           .....+...+..+.+||.+||+.||++||     ++.|+++||||...++..
T Consensus       236 ---------------------~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~  287 (327)
T 3a62_A          236 ---------------------CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEE  287 (327)
T ss_dssp             ---------------------TCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHH
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHH
Confidence                                 11223344467899999999999999999     899999999999887644

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.3e-33  Score=259.26  Aligned_cols=212  Identities=23%  Similarity=0.388  Sum_probs=153.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++..     ++...+..++.||+.||.|||++ ||+||||||+||+++..                 
T Consensus       110 lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~~-----------------  166 (330)
T 3nsz_A          110 LVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMIDHE-----------------  166 (330)
T ss_dssp             EEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT-----------------
T ss_pred             EEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEEcCC-----------------
Confidence            589999 8899988753     88999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                            ...++|+|||.+....  .......+
T Consensus       167 ------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~  192 (330)
T 3nsz_A          167 ------------------------------------------------------HRKLRLIDWGLAEFYHPGQEYNVRVA  192 (330)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCTTCCCCSCCS
T ss_pred             ------------------------------------------------------CCEEEEEeCCCceEcCCCCccccccc
Confidence                                                                  2378999999996543  23345578


Q ss_pred             CCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHH-HHhcCC-CCccc
Q 020248          158 TRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRK-IAIGGA-QSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~-~~~~~~-~~~~~  234 (329)
                      +..|+|||++.+ ..++.++|||||||++|+|++|..||....     +....+..+...+|..+.. +..... .....
T Consensus       193 ~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (330)
T 3nsz_A          193 SRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR  267 (330)
T ss_dssp             CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTH
T ss_pred             cccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC-----chHHHHHHHHHhcCCchhhhHHHHhccccccc
Confidence            899999999987 568999999999999999999999996543     5677778888877753221 111110 00000


Q ss_pred             cCccCchhhhc-cccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          235 FDRHGDLKRIR-RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                            ..... ............  .......+..+.+||++||++||++|||++|+++||||+.+.+
T Consensus       268 ------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~~  328 (330)
T 3nsz_A          268 ------FNDILGRHSRKRWERFVH--SENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK  328 (330)
T ss_dssp             ------HHHHHCCCCCCCGGGGCC--TTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC-
T ss_pred             ------hhhhhhhccccchhhhcc--ccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhcc
Confidence                  00000 000000011100  0112235678999999999999999999999999999998764

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.2e-33  Score=263.13  Aligned_cols=215  Identities=26%  Similarity=0.417  Sum_probs=157.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++.                    
T Consensus       111 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~--------------------  168 (362)
T 3pg1_A          111 LVTELMRTDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHEA-GVVHRDLHPGNILLA--------------------  168 (362)
T ss_dssp             EEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEccCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-cCEecCCChHHEEEc--------------------
Confidence            589999889998887543 4689999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       169 ----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~t  196 (362)
T 3pg1_A          169 ----------------------------------------------------DNNDITICDFNLAREDTADANKTHYVTH  196 (362)
T ss_dssp             ----------------------------------------------------TTCCEEECCTTC---------------C
T ss_pred             ----------------------------------------------------CCCCEEEEecCcccccccccccceeccc
Confidence                                                                245799999999964332  33445778


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc--ccc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK--DYF  235 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~  235 (329)
                      +.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      .....+..+.+..|.++......+....  .++
T Consensus       197 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  270 (362)
T 3pg1_A          197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS------TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYL  270 (362)
T ss_dssp             GGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHT
T ss_pred             ceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHHcCCCChHHhhhccchhhhHHH
Confidence            89999999987 67899999999999999999999999876      5788899999999988766543322111  000


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      ....     ..........       .....+..+.+||.+||++||++|||+.|+++||||+....+.+..
T Consensus       271 ~~~~-----~~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~~~  330 (362)
T 3pg1_A          271 RNSL-----SNVPARAWTA-------VVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFDPLDLT  330 (362)
T ss_dssp             TTCC-----CCCCCCCHHH-------HSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCCGGGGT
T ss_pred             Hhhc-----ccCChhhHHh-------hCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccCccccc
Confidence            0000     0000000111       1223457899999999999999999999999999999876554443

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.5e-34  Score=263.50  Aligned_cols=192  Identities=30%  Similarity=0.450  Sum_probs=149.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       106 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~-givH~Dikp~NIl~~~~-----------------  167 (327)
T 3lm5_A          106 LILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN-NIVHLDLKPQNILLSSI-----------------  167 (327)
T ss_dssp             EEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESCB-----------------
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC-CeecCcCChHHEEEecC-----------------
Confidence            589999 88999998765446699999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       168 ----------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~g  195 (327)
T 3lm5_A          168 ----------------------------------------------------YPLGDIKIVDFGMSRKIGHACELREIMG  195 (327)
T ss_dssp             ----------------------------------------------------TTBCCEEECCGGGCEEC---------CC
T ss_pred             ----------------------------------------------------CCCCcEEEeeCccccccCCccccccccC
Confidence                                                                1135799999999966543  2344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||...      +.......+.......+..              
T Consensus       196 t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~~--------------  255 (327)
T 3lm5_A          196 TPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE------DNQETYLNISQVNVDYSEE--------------  255 (327)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCTT--------------
T ss_pred             CcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CchHHHHHHHhcccccCch--------------
Confidence            99999999999999999999999999999999999999765      3444444443322221110              


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                                              .....+..+.+||.+||+.||++|||++|+++||||+..++....
T Consensus       256 ------------------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~~~~~~  300 (327)
T 3lm5_A          256 ------------------------TFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFENLF  300 (327)
T ss_dssp             ------------------------TTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCCTTCC-
T ss_pred             ------------------------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhccccccccc
Confidence                                    112335678999999999999999999999999999988765543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.4e-33  Score=262.30  Aligned_cols=185  Identities=28%  Similarity=0.392  Sum_probs=144.0

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||| |++|.+.+....  ...+++..+..++.||+.||.|||++ ||+||||||+||++...               
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivHrDlkp~NIl~~~~---------------  166 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN-NIIHRDVKPHCVLLASK---------------  166 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECSS---------------
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCChHHeEEecC---------------
Confidence            589999 899988876543  23489999999999999999999995 99999999999999432               


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                            +....++|+|||.+......   ...
T Consensus       167 ------------------------------------------------------~~~~~vkl~Dfg~a~~~~~~~~~~~~  192 (351)
T 3c0i_A          167 ------------------------------------------------------ENSAPVKLGGFGVAIQLGESGLVAGG  192 (351)
T ss_dssp             ------------------------------------------------------STTCCEEECCCTTCEECCTTSCBCCC
T ss_pred             ------------------------------------------------------CCCCcEEEecCcceeEecCCCeeecC
Confidence                                                                  11345999999999665432   334


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..||+.|+|||++.+..++.++|||||||++|+|++|..||.+.       .......+..-.-.++...          
T Consensus       193 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~i~~~~~~~~~~~----------  255 (351)
T 3c0i_A          193 RVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT-------KERLFEGIIKGKYKMNPRQ----------  255 (351)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS-------HHHHHHHHHHTCCCCCHHH----------
T ss_pred             CcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc-------HHHHHHHHHcCCCCCCccc----------
Confidence            57899999999999999999999999999999999999999754       2222222221100110000          


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                                  ....+..+.+||++||+.||++|||+.|+++||||+..
T Consensus       256 ----------------------------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          256 ----------------------------WSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             ----------------------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             ----------------------------cccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence                                        01235688999999999999999999999999999864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.3e-33  Score=283.46  Aligned_cols=182  Identities=24%  Similarity=0.376  Sum_probs=151.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  +.+++..++.++.||+.||.|||++ ||+||||||+|||+                    
T Consensus       419 lV~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~~-gIiHrDLKp~NILl--------------------  475 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLFFLQSK-GIIYRDLKLDNVML--------------------  475 (674)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-SEECCCCCSTTEEE--------------------
T ss_pred             EEEeCcCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeEeccCChhhEEE--------------------
Confidence            689999 89999999876  3499999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....++|+|||++....   ......+
T Consensus       476 ----------------------------------------------------~~~g~ikL~DFGla~~~~~~~~~~~~~~  503 (674)
T 3pfq_A          476 ----------------------------------------------------DSEGHIKIADFGMCKENIWDGVTTKTFC  503 (674)
T ss_dssp             ----------------------------------------------------CSSSCEEECCCTTCEECCCTTCCBCCCC
T ss_pred             ----------------------------------------------------cCCCcEEEeecceeeccccCCccccccc
Confidence                                                                335679999999986432   2345568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++|+|||||++|+|++|..||.+.      +.......|.                      
T Consensus       504 GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~------~~~~~~~~i~----------------------  555 (674)
T 3pfq_A          504 GTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE------DEDELFQSIM----------------------  555 (674)
T ss_dssp             SCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH----------------------
T ss_pred             CCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC------CHHHHHHHHH----------------------
Confidence            999999999999999999999999999999999999999865      2333333332                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH-----HHHhcCCCcCCCCCChh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-----QQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta-----~ell~hpwf~~~~~~~~  305 (329)
                                          .....++...+.++.+||++||+.||++|+++     .||++||||..++|..-
T Consensus       556 --------------------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l  609 (674)
T 3pfq_A          556 --------------------EHNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL  609 (674)
T ss_dssp             --------------------SSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHH
T ss_pred             --------------------hCCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHHHH
Confidence                                12222344557789999999999999999997     99999999999876544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.3e-34  Score=270.85  Aligned_cols=190  Identities=11%  Similarity=0.129  Sum_probs=142.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHH------HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKV------REICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~------~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      ||||||+++|.+++.... ..++...+      ..++.||+.||+|||++ ||+||||||+||+++              
T Consensus       165 lv~e~~~~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~--------------  228 (371)
T 3q60_A          165 LLMPAASVDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSK-GLVHGHFTPDNLFIM--------------  228 (371)
T ss_dssp             EEECCCSEEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEEC--------------
T ss_pred             EEecCCCCCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHC-CCccCcCCHHHEEEC--------------
Confidence            589999889999998753 23455555      67889999999999995 999999999999993              


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccccc
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAE  154 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~  154 (329)
                                                                                ....++|+|||.+.........
T Consensus       229 ----------------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~  250 (371)
T 3q60_A          229 ----------------------------------------------------------PDGRLMLGDVSALWKVGTRGPA  250 (371)
T ss_dssp             ----------------------------------------------------------TTSCEEECCGGGEEETTCEEEG
T ss_pred             ----------------------------------------------------------CCCCEEEEecceeeecCCCccC
Confidence                                                                      3457999999999777655545


Q ss_pred             CCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          155 EIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..+++.|+|||++.+  ..++.++|||||||++|+|++|..||........                      ..+....
T Consensus       251 ~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~----------------------~~~~~~~  308 (371)
T 3q60_A          251 SSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIK----------------------GSWKRPS  308 (371)
T ss_dssp             GGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCT----------------------TCCCBCC
T ss_pred             ccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccc----------------------cchhhhh
Confidence            566799999999987  6799999999999999999999999987631100                      0000000


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                        ......    ..           ...+.....+..+.+||.+||++||++|||+.|+++||||+...+.
T Consensus       309 --~~~~~~----~~-----------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  362 (371)
T 3q60_A          309 --LRVPGT----DS-----------LAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNE  362 (371)
T ss_dssp             --TTSCCC----CS-----------CCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHH
T ss_pred             --hhhccc----cc-----------cchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHH
Confidence              000000    00           0000112446789999999999999999999999999999876543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.2e-33  Score=252.25  Aligned_cols=195  Identities=27%  Similarity=0.413  Sum_probs=152.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+.+....  .++...+..++.|++.||.|||++ |++||||||+||++...                 
T Consensus        82 ~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~~-----------------  141 (284)
T 3kk8_A           82 LVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSN-GIVHRNLKPENLLLASK-----------------  141 (284)
T ss_dssp             EEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSS-----------------
T ss_pred             EEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CcCcCCCCHHHEEEecC-----------------
Confidence            589999 889999888763  499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                          +....++|+|||.+......  .....+
T Consensus       142 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  169 (284)
T 3kk8_A          142 ----------------------------------------------------AKGAAVKLADFGLAIEVNDSEAWHGFAG  169 (284)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECCSSCBCCCSCS
T ss_pred             ----------------------------------------------------CCCCcEEEeeceeeEEcccCccccCCCC
Confidence                                                                12345899999999665532  234578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||...      +.......+.......|.               
T Consensus       170 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~---------------  228 (284)
T 3kk8_A          170 TPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE------DQHRLYAQIKAGAYDYPS---------------  228 (284)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCT---------------
T ss_pred             CcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC------chhHHHHHHHhccccCCc---------------
Confidence            99999999999999999999999999999999999999765      233333333221111110               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhhcCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS  311 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~~~~  311 (329)
                                             ......+..+.+||.+||+.||++|||+.|+++||||...........++.
T Consensus       229 -----------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~~~~~~~~  279 (284)
T 3kk8_A          229 -----------------------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERVASAIHRQD  279 (284)
T ss_dssp             -----------------------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCCGGGSCCCCC
T ss_pred             -----------------------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCChhHHhHhhcCC
Confidence                                   011233567899999999999999999999999999998776655554443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.6e-34  Score=268.44  Aligned_cols=187  Identities=29%  Similarity=0.456  Sum_probs=147.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       125 lv~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDlkp~NIll~~~-----------------  185 (387)
T 1kob_A          125 LILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCETK-----------------  185 (387)
T ss_dssp             EEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESST-----------------
T ss_pred             EEEEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeecccchHHeEEecC-----------------
Confidence            589999 899999887542 3589999999999999999999995 99999999999999321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....|
T Consensus       186 -----------------------------------------------------~~~~vkL~DFG~a~~~~~~~~~~~~~g  212 (387)
T 1kob_A          186 -----------------------------------------------------KASSVKIIDFGLATKLNPDEIVKVTTA  212 (387)
T ss_dssp             -----------------------------------------------------TCCCEEECCCTTCEECCTTSCEEEECS
T ss_pred             -----------------------------------------------------CCCceEEEecccceecCCCcceeeecc
Confidence                                                                 1346999999999665432  234478


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+....-.++                
T Consensus       213 t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~------~~~~~~~~i~~~~~~~~----------------  270 (387)
T 1kob_A          213 TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE------DDLETLQNVKRCDWEFD----------------  270 (387)
T ss_dssp             SGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHHCCCCCC----------------
T ss_pred             CCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCC----------------
Confidence            99999999999999999999999999999999999999765      33333333322100000                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            .......+..+.+||.+||+.||++|||+.|+++||||+...+.
T Consensus       271 ----------------------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  314 (387)
T 1kob_A          271 ----------------------EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSN  314 (387)
T ss_dssp             ----------------------SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCCTT
T ss_pred             ----------------------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCCccc
Confidence                                  00112335688999999999999999999999999999976543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=8.6e-34  Score=254.58  Aligned_cols=181  Identities=24%  Similarity=0.441  Sum_probs=144.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        86 lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~-~i~H~dlkp~Nili~-------------------  143 (279)
T 3fdn_A           86 LILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLG-------------------  143 (279)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTT-TCEECCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CEecccCChHhEEEc-------------------
Confidence            589999 789999998763  489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......++
T Consensus       144 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  170 (279)
T 3fdn_A          144 -----------------------------------------------------SAGELKIADFGWSVHAPSSRRTDLCGT  170 (279)
T ss_dssp             -----------------------------------------------------TTSCEEECSCCEESCC--------CCC
T ss_pred             -----------------------------------------------------CCCCEEEEeccccccCCcccccccCCC
Confidence                                                                 345799999999855443 23445789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||...      +.......+..                       
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~-----------------------  221 (279)
T 3fdn_A          171 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN------TYQETYKRISR-----------------------  221 (279)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHH-----------------------
T ss_pred             CCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC------cHHHHHHHHHh-----------------------
Confidence            9999999999999999999999999999999999999765      22223332221                       


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                         .....+...+..+.+||.+||+.||++|||+.|+++||||+...+..
T Consensus       222 -------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~~~~  268 (279)
T 3fdn_A          222 -------------------VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP  268 (279)
T ss_dssp             -------------------TCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHCSSC
T ss_pred             -------------------CCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCccCc
Confidence                               11123334467889999999999999999999999999999765544

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.2e-33  Score=260.08  Aligned_cols=188  Identities=25%  Similarity=0.470  Sum_probs=127.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~-----------------  142 (325)
T 3kn6_A           83 LVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSHMHDV-GVVHRDLKPENLLFTDE-----------------  142 (325)
T ss_dssp             EEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEC------------------
T ss_pred             EEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCeecCCCHHHEEEecC-----------------
Confidence            589999 88999999876  4599999999999999999999995 99999999999999542                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                          +....++|+|||.+.....   ......
T Consensus       143 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  170 (325)
T 3kn6_A          143 ----------------------------------------------------NDNLEIKIIDFGFARLKPPDNQPLKTPC  170 (325)
T ss_dssp             -------------------------------------------------------CEEEECCCTTCEECCC---------
T ss_pred             ----------------------------------------------------CCcccEEEeccccceecCCCCCcccccC
Confidence                                                                1234799999999965432   234456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCc-hHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED-EDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~-~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +|+.|+|||++.+..++.++|||||||++|+|++|..||........... ...+..+.                     
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~---------------------  229 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIK---------------------  229 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHT---------------------
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHH---------------------
Confidence            78999999999999999999999999999999999999976532111111 11111110                     


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCC----hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                           ......+    ...+..+.+||++||++||++|||+.|+++||||+....
T Consensus       230 ---------------------~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~  279 (325)
T 3kn6_A          230 ---------------------KGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQ  279 (325)
T ss_dssp             ---------------------TTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCC
T ss_pred             ---------------------cCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCcc
Confidence                                 0000001    123568999999999999999999999999999987543

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=4.5e-33  Score=257.98  Aligned_cols=217  Identities=29%  Similarity=0.442  Sum_probs=159.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++...   .++...+..++.||+.||.|||++ ||+||||||+||+++                    
T Consensus        91 lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~-~ivH~Dlkp~Nil~~--------------------  146 (353)
T 2b9h_A           91 IIQELMQTDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGS-NVIHRDLKPSNLLIN--------------------  146 (353)
T ss_dssp             EEECCCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC--------------------
T ss_pred             EEEeccCccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeEEc--------------------
Confidence            58999988999998863   499999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                          ....++|+|||.+......         
T Consensus       147 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  174 (353)
T 2b9h_A          147 ----------------------------------------------------SNCDLKVCDFGLARIIDESAADNSEPTG  174 (353)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEECC-----------
T ss_pred             ----------------------------------------------------CCCcEEEEecccccccccccccccCccc
Confidence                                                                2457999999998654421         


Q ss_pred             ----cccCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh
Q 020248          152 ----FAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  226 (329)
Q Consensus       152 ----~~~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  226 (329)
                          .....|++.|+|||++.+ ..++.++|||||||++|+|++|..||.+.      +....+..+....|.++.....
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~  248 (353)
T 2b9h_A          175 QQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR------DYRHQLLLIFGIIGTPHSDNDL  248 (353)
T ss_dssp             -----CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCSTTTT
T ss_pred             cccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHhCCCchhccc
Confidence                223467899999999875 67899999999999999999999999876      5677888888888876532211


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      ...........   ...............       ....+..+.+||++||+.||++|||++|+++||||+.......+
T Consensus       249 ~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~~  318 (353)
T 2b9h_A          249 RCIESPRAREY---IKSLPMYPAAPLEKM-------FPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDE  318 (353)
T ss_dssp             TTCCCHHHHHH---HHTSCCCCCCCHHHH-------STTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTTSS
T ss_pred             cccccchhhHH---hhcccCCCCcchhhh-------cccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCcccc
Confidence            11000000000   000000000001111       12346788999999999999999999999999999988776654


Q ss_pred             hhc
Q 020248          307 TKN  309 (329)
Q Consensus       307 ~~~  309 (329)
                      ...
T Consensus       319 ~~~  321 (353)
T 2b9h_A          319 PEG  321 (353)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            433

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=261.46  Aligned_cols=188  Identities=28%  Similarity=0.428  Sum_probs=139.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||+. ||+||||||+||++...                 
T Consensus       125 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dikp~NIll~~~-----------------  184 (349)
T 2w4o_A          125 LVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYLHEN-GIVHRDLKPENLLYATP-----------------  184 (349)
T ss_dssp             EEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESSS-----------------
T ss_pred             EEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCcccEEEecC-----------------
Confidence            589999 89999998765  3489999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       185 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  212 (349)
T 2w4o_A          185 ----------------------------------------------------APDAPLKIADFGLSKIVEHQVLMKTVCG  212 (349)
T ss_dssp             ----------------------------------------------------STTCCEEECCCC----------------
T ss_pred             ----------------------------------------------------CCCCCEEEccCccccccCcccccccccC
Confidence                                                                1245799999999865543  2334578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||....     .....+..+.......+.               
T Consensus       213 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~~i~~~~~~~~~---------------  272 (349)
T 2w4o_A          213 TPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER-----GDQFMFRRILNCEYYFIS---------------  272 (349)
T ss_dssp             CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT-----CHHHHHHHHHTTCCCCCT---------------
T ss_pred             CCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc-----ccHHHHHHHHhCCCccCC---------------
Confidence            999999999999999999999999999999999999997652     112122222211000000               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                             +.....+..+.+||++||+.||++|||+.|+++||||......
T Consensus       273 -----------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~  315 (349)
T 2w4o_A          273 -----------------------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAAN  315 (349)
T ss_dssp             -----------------------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTTCC
T ss_pred             -----------------------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCccc
Confidence                                   0112345688999999999999999999999999999987654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=8.8e-34  Score=263.88  Aligned_cols=221  Identities=24%  Similarity=0.371  Sum_probs=145.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||++.||+||||||+||+++                   
T Consensus       108 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~-------------------  166 (360)
T 3eqc_A          108 ICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN-------------------  166 (360)
T ss_dssp             EEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEEC-------------------
T ss_pred             EEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEEC-------------------
Confidence            589999 889999998763  4899999999999999999999833899999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......|+
T Consensus       167 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~gt  193 (360)
T 3eqc_A          167 -----------------------------------------------------SRGEIKLCDFGVSGQLIDSMANSFVGT  193 (360)
T ss_dssp             -----------------------------------------------------TTCCEEECCCCCCHHHHHHC----CCC
T ss_pred             -----------------------------------------------------CCCCEEEEECCCCcccccccccCCCCC
Confidence                                                                 245799999999854432 33445789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHH--HHhCCCcHHHHhcCCCCccccC
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMM--ELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~--~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||...       +...+..+.  ...+..+.... ........+.
T Consensus       194 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  265 (360)
T 3eqc_A          194 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP-------DAKELELMFGCQVEGDAAETPP-RPRTPGRPLN  265 (360)
T ss_dssp             CTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC-------CHHHHHHHHC-----------------------
T ss_pred             CCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHhcccccccCCCCCC-CcccCCCccc
Confidence            9999999999999999999999999999999999999865       222222221  11121111111 1111111111


Q ss_pred             ccCchhhhccccccchhHHHhhhcC--CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYR--FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ..+.............+.+......  .....+..+.+||++||++||++|||+.|+++||||+...+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  334 (360)
T 3eqc_A          266 KFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE  334 (360)
T ss_dssp             --------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHHS
T ss_pred             ccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchHh
Confidence            1000000000000001111111111  122356789999999999999999999999999999876543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=265.24  Aligned_cols=185  Identities=28%  Similarity=0.450  Sum_probs=148.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..++...++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus        92 lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~NIll--------------------  148 (384)
T 4fr4_A           92 MVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYLQNQ-RIIHRDMKPDNILL--------------------  148 (384)
T ss_dssp             EEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceeccCcHHHeEE--------------------
Confidence            589999 99999999875  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          +....++|+|||.+....  ......+|
T Consensus       149 ----------------------------------------------------~~~g~vkL~DFG~a~~~~~~~~~~~~~g  176 (384)
T 4fr4_A          149 ----------------------------------------------------DEHGHVHITDFNIAAMLPRETQITTMAG  176 (384)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTCCBCCCCS
T ss_pred             ----------------------------------------------------CCCCCEEEeccceeeeccCCCceeccCC
Confidence                                                                334579999999996543  33456689


Q ss_pred             CCCCcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 TRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      |+.|+|||++.+   ..++.++|||||||++|+|++|..||......   ........+                     
T Consensus       177 t~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~---~~~~~~~~~---------------------  232 (384)
T 4fr4_A          177 TKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST---SSKEIVHTF---------------------  232 (384)
T ss_dssp             CGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS---CHHHHHHHH---------------------
T ss_pred             CccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc---cHHHHHHHH---------------------
Confidence            999999999974   45899999999999999999999999754210   011111111                     


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-HHHHhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-a~ell~hpwf~~~~~~~~  305 (329)
                                           .......+...+..+.+||.+||+.||++||+ +.++++||||..++|..-
T Consensus       233 ---------------------~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~~w~~~  283 (384)
T 4fr4_A          233 ---------------------ETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDINWDAV  283 (384)
T ss_dssp             ---------------------HHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTCCHHHH
T ss_pred             ---------------------hhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcCCHHHH
Confidence                                 11112234445678999999999999999998 899999999999887543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.2e-33  Score=260.16  Aligned_cols=209  Identities=28%  Similarity=0.465  Sum_probs=155.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.++....  ..++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       101 lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~dlkp~Nil~~-------------------  158 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFCHSH-NIIHRDIKPENILVS-------------------  158 (331)
T ss_dssp             EEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-------------------
T ss_pred             EEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHC-CEEccCcChheEEEc-------------------
Confidence            589999 77788776654  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       159 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  185 (331)
T 4aaa_A          159 -----------------------------------------------------QSGVVKLCDFGFARTLAAPGEVYDDEV  185 (331)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTC------------CC
T ss_pred             -----------------------------------------------------CCCcEEEEeCCCceeecCCccccCCCc
Confidence                                                                 245799999999865432   234457


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+. .++.++|||||||++|+|++|..||.+.      .....+..+....|..++.....+.....+.
T Consensus       186 ~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 4aaa_A          186 ATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD------SDIDQLYHIMMCLGNLIPRHQELFNKNPVFA  259 (331)
T ss_dssp             CCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHHHHHHCGGGT
T ss_pred             CCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC------CcHHHHHHHHHHhCCCChhhhhHhhhccccc
Confidence            88999999999875 7899999999999999999999999876      5778888888899987766543322111110


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .. . .....  ........       ....+..+.+||.+||++||++|||++|+|+||||+...
T Consensus       260 ~~-~-~~~~~--~~~~~~~~-------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  314 (331)
T 4aaa_A          260 GV-R-LPEIK--EREPLERR-------YPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDG  314 (331)
T ss_dssp             TC-C-CCCCS--SCCCHHHH-------STTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGGG
T ss_pred             cc-c-Ccccc--ccchhhhc-------ccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhccCC
Confidence            00 0 00000  00000111       123467899999999999999999999999999998653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=264.65  Aligned_cols=186  Identities=25%  Similarity=0.409  Sum_probs=147.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||+. ||+||||||+||++                    
T Consensus       138 lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~-giiHrDLKp~NILl--------------------  195 (412)
T 2vd5_A          138 LVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRL-GYVHRDIKPDNILL--------------------  195 (412)
T ss_dssp             EEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecccCHHHeee--------------------
Confidence            689999 999999998653 3599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                          +....++|+|||++......    ....
T Consensus       196 ----------------------------------------------------d~~g~vkL~DFGla~~~~~~~~~~~~~~  223 (412)
T 2vd5_A          196 ----------------------------------------------------DRCGHIRLADFGSCLKLRADGTVRSLVA  223 (412)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTSCEECSSC
T ss_pred             ----------------------------------------------------cCCCCEEEeechhheeccCCCcccccee
Confidence                                                                33467999999999655432    2345


Q ss_pred             CCCCCCcchHHhhc-------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhC--CCcHHHHh
Q 020248          156 IQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIG--KMPRKIAI  226 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g--~~p~~~~~  226 (329)
                      +||+.|+|||++..       ..++.++|+|||||++|+|++|..||.+.      +.......|.....  .+|     
T Consensus       224 ~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~------~~~~~~~~i~~~~~~~~~p-----  292 (412)
T 2vd5_A          224 VGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD------STAETYGKIVHYKEHLSLP-----  292 (412)
T ss_dssp             CSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHTHHHHCCCC-----
T ss_pred             ccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC------CHHHHHHHHHhcccCcCCC-----
Confidence            78999999999983       46899999999999999999999999765      33334444432100  000     


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCC---cCHHHHhcCCCcCCCCCC
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR---PTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R---~ta~ell~hpwf~~~~~~  303 (329)
                                                        ......+.++.+||++||+ +|++|   ++++|+++||||+.++|.
T Consensus       293 ----------------------------------~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~  337 (412)
T 2vd5_A          293 ----------------------------------LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWD  337 (412)
T ss_dssp             --------------------------------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCST
T ss_pred             ----------------------------------ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHH
Confidence                                              0112346789999999999 99998   499999999999999886


Q ss_pred             hhh
Q 020248          304 RDE  306 (329)
Q Consensus       304 ~~~  306 (329)
                      .-.
T Consensus       338 ~l~  340 (412)
T 2vd5_A          338 GLR  340 (412)
T ss_dssp             TST
T ss_pred             HHh
Confidence            543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=1e-33  Score=262.45  Aligned_cols=188  Identities=30%  Similarity=0.472  Sum_probs=144.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++....                
T Consensus        93 lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH~~-givHrDlkp~NIl~~~~~----------------  153 (342)
T 2qr7_A           93 VVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLHAQ-GVVHRDLKPSNILYVDES----------------  153 (342)
T ss_dssp             EEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEESSSS----------------
T ss_pred             EEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEeccCCHHHEEEecCC----------------
Confidence            589999 89999999865  3599999999999999999999995 999999999999983310                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                          +....++|+|||.+.....   .....+
T Consensus       154 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  181 (342)
T 2qr7_A          154 ----------------------------------------------------GNPESIRICDFGFAKQLRAENGLLMTPC  181 (342)
T ss_dssp             ----------------------------------------------------CSGGGEEECCCTTCEECBCTTCCBCCSS
T ss_pred             ----------------------------------------------------CCcCeEEEEECCCcccCcCCCCceeccC
Confidence                                                                1124699999999965432   234567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||.....   ......+..+..  |.++        ..     
T Consensus       182 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~~~~i~~--~~~~--------~~-----  243 (342)
T 2qr7_A          182 YTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD---DTPEEILARIGS--GKFS--------LS-----  243 (342)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT---SCHHHHHHHHHH--CCCC--------CC-----
T ss_pred             CCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc---CCHHHHHHHHcc--CCcc--------cC-----
Confidence            89999999999988899999999999999999999999975421   111222222211  1100        00     


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                             .......+..+.+||++||+.||++|||+.|+++||||...
T Consensus       244 -----------------------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~~  284 (342)
T 2qr7_A          244 -----------------------GGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHW  284 (342)
T ss_dssp             -----------------------STTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHTG
T ss_pred             -----------------------ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecCc
Confidence                                   00112346789999999999999999999999999999653

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=257.45  Aligned_cols=175  Identities=27%  Similarity=0.352  Sum_probs=137.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||+++                    
T Consensus       134 lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIll~--------------------  191 (311)
T 3p1a_A          134 LQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQ-GLVHLDVKPANIFLG--------------------  191 (311)
T ss_dssp             EEEECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC--------------------
T ss_pred             EEEeccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEC--------------------
Confidence            589999999999888754 4699999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......||
T Consensus       192 ----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt  219 (311)
T 3p1a_A          192 ----------------------------------------------------PRGRCKLGDFGLLVELGTAGAGEVQEGD  219 (311)
T ss_dssp             ----------------------------------------------------GGGCEEECCCTTCEECC------CCCCC
T ss_pred             ----------------------------------------------------CCCCEEEccceeeeecccCCCCcccCCC
Confidence                                                                245799999999865543  23344689


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+ .++.++|||||||++|+|++|..||...         .....+.  .+..+..+              
T Consensus       220 ~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~---------~~~~~~~--~~~~~~~~--------------  273 (311)
T 3p1a_A          220 PRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG---------EGWQQLR--QGYLPPEF--------------  273 (311)
T ss_dssp             GGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH---------HHHHHHT--TTCCCHHH--------------
T ss_pred             ccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc---------cHHHHHh--ccCCCccc--------------
Confidence            99999998876 7999999999999999999997776542         1111110  01111100              


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                              +...+..+.+||.+||++||++|||+.|+++||||+.
T Consensus       274 ------------------------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          274 ------------------------TAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             ------------------------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             ------------------------ccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence                                    1223578999999999999999999999999999975

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.5e-33  Score=276.69  Aligned_cols=188  Identities=28%  Similarity=0.403  Sum_probs=151.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......+++..++.++.||+.||.|||++ ||+||||||+||++                    
T Consensus       261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~-gIvHrDLKPeNILl--------------------  319 (576)
T 2acx_A          261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE-RIVYRDLKPENILL--------------------  319 (576)
T ss_dssp             EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE--------------------
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC-CEeccCCchheEEE--------------------
Confidence            689999 99999999876555699999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          +....++|+|||++.....  .....+|
T Consensus       320 ----------------------------------------------------d~~g~vKL~DFGla~~~~~~~~~~~~~G  347 (576)
T 2acx_A          320 ----------------------------------------------------DDHGHIRISDLGLAVHVPEGQTIKGRVG  347 (576)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECCTTCCEECCCS
T ss_pred             ----------------------------------------------------eCCCCeEEEecccceecccCccccccCC
Confidence                                                                3345799999999965543  3345689


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|+|||||++|+|++|..||......   .....+...                        
T Consensus       348 T~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~---~~~~~i~~~------------------------  400 (576)
T 2acx_A          348 TVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK---IKREEVERL------------------------  400 (576)
T ss_dssp             CGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC---CCHHHHHHH------------------------
T ss_pred             CccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc---hhHHHHHHH------------------------
Confidence            99999999999989999999999999999999999999765211   011111111                        


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~  305 (329)
                                       +......++...+..+.+||++||+.||++||     ++.|+++||||+..+|..-
T Consensus       401 -----------------i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l  456 (576)
T 2acx_A          401 -----------------VKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRL  456 (576)
T ss_dssp             -----------------HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHH
T ss_pred             -----------------hhcccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHH
Confidence                             11111223344567899999999999999999     8999999999999876544

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=263.69  Aligned_cols=186  Identities=31%  Similarity=0.410  Sum_probs=147.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..++...+..++.||+.||.|||+. ||+||||||+||++...                 
T Consensus       163 lv~E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~-----------------  223 (373)
T 2x4f_A          163 LVMEYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQM-YILHLDLKPENILCVNR-----------------  223 (373)
T ss_dssp             EEEECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEET-----------------
T ss_pred             EEEeCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcccccCCHHHEEEecC-----------------
Confidence            589999 889999887543 3489999999999999999999995 99999999999998431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       224 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~g  250 (373)
T 2x4f_A          224 -----------------------------------------------------DAKQIKIIDFGLARRYKPREKLKVNFG  250 (373)
T ss_dssp             -----------------------------------------------------TTTEEEECCCSSCEECCTTCBCCCCCS
T ss_pred             -----------------------------------------------------CCCcEEEEeCCCceecCCccccccccC
Confidence                                                                 134799999999965543  2344568


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+.      +....+..+......++..              
T Consensus       251 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~------~~~~~~~~i~~~~~~~~~~--------------  310 (373)
T 2x4f_A          251 TPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD------NDAETLNNILACRWDLEDE--------------  310 (373)
T ss_dssp             SCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHHTCCCSCSG--------------
T ss_pred             CCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhccCCCChh--------------
Confidence            99999999999888999999999999999999999999865      3444444443321111100              


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                              .....+..+.+||.+||+.||++|||+.|+++||||.....
T Consensus       311 ------------------------~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~~  351 (373)
T 2x4f_A          311 ------------------------EFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHKL  351 (373)
T ss_dssp             ------------------------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHHH
T ss_pred             ------------------------hhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCCch
Confidence                                    00123568899999999999999999999999999998654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=5.5e-33  Score=255.02  Aligned_cols=180  Identities=31%  Similarity=0.557  Sum_probs=143.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||.|||++ ||+||||||+||++.                   
T Consensus       119 lv~e~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~-------------------  175 (321)
T 2c30_A          119 VLMEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHAQ-GVIHRDIKSDSILLT-------------------  175 (321)
T ss_dssp             EEECCCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEC-------------------
Confidence            589999 89999988753   489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       176 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  202 (321)
T 2c30_A          176 -----------------------------------------------------LDGRVKLSDFGFCAQISKDVPKRKSLV  202 (321)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSSSCCBCCCC
T ss_pred             -----------------------------------------------------CCCcEEEeeeeeeeecccCcccccccc
Confidence                                                                 245799999999865543   234457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+..   ..++.             
T Consensus       203 gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~------~~~~~~~~~~~---~~~~~-------------  260 (321)
T 2c30_A          203 GTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD------SPVQAMKRLRD---SPPPK-------------  260 (321)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH---SSCCC-------------
T ss_pred             CCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHhc---CCCCC-------------
Confidence            899999999999999999999999999999999999999765      22222222211   10000             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                             .......+..+.+||.+||+.||++|||+.|+++||||....
T Consensus       261 -----------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          261 -----------------------LKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             -----------------------CTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGCC
T ss_pred             -----------------------cCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccCC
Confidence                                   001122356789999999999999999999999999998654

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.8e-33  Score=261.28  Aligned_cols=182  Identities=26%  Similarity=0.410  Sum_probs=132.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++....  .++...++.++.||+.||.|||++ ||+||||||+||+++..                 
T Consensus        93 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~-~ivH~Dlkp~Nill~~~-----------------  152 (361)
T 3uc3_A           93 IIMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSM-QICHRDLKLENTLLDGS-----------------  152 (361)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCSCCCCGGGEEECSS-----------------
T ss_pred             EEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEcCC-----------------
Confidence            589999 899999998763  499999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                           ....++|+|||.+....  .......|
T Consensus       153 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~g  179 (361)
T 3uc3_A          153 -----------------------------------------------------PAPRLKICDFGYSKSSVLHSQPKSTVG  179 (361)
T ss_dssp             -----------------------------------------------------SSCCEEECCCCCC--------------
T ss_pred             -----------------------------------------------------CCceEEEeecCccccccccCCCCCCcC
Confidence                                                                 12359999999985332  23345578


Q ss_pred             CCCCcchHHhhcCCCCcc-chHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGYSFS-VDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~-~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+..++.+ +|||||||++|+|++|..||.+...     .......+......                 
T Consensus       180 t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~~~~~~~~~~-----------------  237 (361)
T 3uc3_A          180 TPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE-----PRDYRKTIQRILSV-----------------  237 (361)
T ss_dssp             -CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC---------CCCHHHHHHHHHTT-----------------
T ss_pred             CCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc-----HHHHHHHHHHHhcC-----------------
Confidence            999999999998887655 8999999999999999999976531     11111111111111                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCC--hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFS--ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                            ....+  ...+..+.+||++||+.||++|||+.|+++||||..
T Consensus       238 ----------------------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~  280 (361)
T 3uc3_A          238 ----------------------KYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLK  280 (361)
T ss_dssp             ----------------------CCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHT
T ss_pred             ----------------------CCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhc
Confidence                                  11111  123568899999999999999999999999999964

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=5.3e-33  Score=249.00  Aligned_cols=185  Identities=27%  Similarity=0.416  Sum_probs=145.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||++ |++||||||+||++...                 
T Consensus        83 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~~-----------------  142 (277)
T 3f3z_A           83 LVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKL-NVAHRDLKPENFLFLTD-----------------  142 (277)
T ss_dssp             EEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS-----------------
T ss_pred             EEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCCHHHEEEecC-----------------
Confidence            589999 889999988763  489999999999999999999995 99999999999999332                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          +....++|+|||.+.....  ......+
T Consensus       143 ----------------------------------------------------~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  170 (277)
T 3f3z_A          143 ----------------------------------------------------SPDSPLKLIDFGLAARFKPGKMMRTKVG  170 (277)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECCTTSCBCCCCS
T ss_pred             ----------------------------------------------------CCCCcEEEEecccceeccCccchhccCC
Confidence                                                                2245799999999865442  3345578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+. ++.++|||||||++|+|++|..||...      ........+.+....+|...+            
T Consensus       171 t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~~------------  231 (277)
T 3f3z_A          171 TPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP------TDSEVMLKIREGTFTFPEKDW------------  231 (277)
T ss_dssp             CTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHCCCCCCHHHH------------
T ss_pred             CCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHhCCCCCCchhh------------
Confidence            9999999998765 899999999999999999999999765      333333333322112221110            


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                ...+..+.+||.+||+.||++|||+.|+++||||+...+
T Consensus       232 --------------------------~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~~  270 (277)
T 3f3z_A          232 --------------------------LNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQLS  270 (277)
T ss_dssp             --------------------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHHC
T ss_pred             --------------------------hcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcccc
Confidence                                      123568899999999999999999999999999986543

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=7e-33  Score=252.86  Aligned_cols=192  Identities=27%  Similarity=0.434  Sum_probs=137.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        88 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~~-----------------  147 (316)
T 2ac3_A           88 LVFEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNK-GIAHRDLKPENILCEHP-----------------  147 (316)
T ss_dssp             EEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEESCS-----------------
T ss_pred             EEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC-CceeCCCCHHHEEEccC-----------------
Confidence            589999 899999998763  499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                          +....++|+|||++.....         
T Consensus       148 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  175 (316)
T 2ac3_A          148 ----------------------------------------------------NQVSPVKICDFDLGSGIKLNGDCSPIST  175 (316)
T ss_dssp             ----------------------------------------------------SSSCSEEECCTTCCC-------------
T ss_pred             ----------------------------------------------------CCcCceEEEEccCccccccCCccccccc
Confidence                                                                1123589999999854321         


Q ss_pred             -ccccCCCCCCCcchHHhhc-----CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCc-----hHHHHHHHHHhCC
Q 020248          151 -QFAEEIQTRQYRAPEVILR-----AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCED-----EDHLALMMELIGK  219 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~-----~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~-----~~~l~~i~~~~g~  219 (329)
                       ......|++.|+|||++.+     ..++.++|||||||++|+|++|..||.........-.     ......+      
T Consensus       176 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~------  249 (316)
T 2ac3_A          176 PELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNML------  249 (316)
T ss_dssp             ------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHH------
T ss_pred             cccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHH------
Confidence             1223458999999999975     4588999999999999999999999987632211000     0000000      


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCCh----hhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSE----TDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                                                      .+.+.......+.    ..+..+.+||++||+.||++|||++|+++||
T Consensus       250 --------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp  297 (316)
T 2ac3_A          250 --------------------------------FESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHP  297 (316)
T ss_dssp             --------------------------------HHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHST
T ss_pred             --------------------------------HHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcCh
Confidence                                            0111111111111    2356899999999999999999999999999


Q ss_pred             CcCCCCC
Q 020248          296 WLSLRNS  302 (329)
Q Consensus       296 wf~~~~~  302 (329)
                      ||+....
T Consensus       298 ~~~~~~~  304 (316)
T 2ac3_A          298 WVQGCAP  304 (316)
T ss_dssp             TCC----
T ss_pred             hhcCCCC
Confidence            9997654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=258.20  Aligned_cols=181  Identities=25%  Similarity=0.446  Sum_probs=138.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||+.|++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||++..                   
T Consensus        86 lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH~~-~iiHrDikp~NIll~~-------------------  143 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIVD-------------------  143 (343)
T ss_dssp             EEECCCSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET-------------------
T ss_pred             EEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEEC-------------------
Confidence            58997799999999875  4599999999999999999999995 9999999999999932                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                            ..++|+|||.+......     ....
T Consensus       144 ------------------------------------------------------~~~kl~DFG~a~~~~~~~~~~~~~~~  169 (343)
T 3dbq_A          144 ------------------------------------------------------GMLKLIDFGIANQMQPDTTSVVKDSQ  169 (343)
T ss_dssp             ------------------------------------------------------TEEEECCCSSSCCC------------
T ss_pred             ------------------------------------------------------CcEEEeecccccccCcccccccCCCC
Confidence                                                                  36899999999655422     2345


Q ss_pred             CCCCCCcchHHhhc-----------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          156 IQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      .||+.|+|||++.+           ..++.++|||||||++|+|++|..||....     +.   ...+...+...    
T Consensus       170 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~---~~~~~~~~~~~----  237 (343)
T 3dbq_A          170 VGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----NQ---ISKLHAIIDPN----  237 (343)
T ss_dssp             CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-----SH---HHHHHHHHCTT----
T ss_pred             cCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh-----hH---HHHHHHHhcCC----
Confidence            78999999999976           678999999999999999999999997542     11   11121111110    


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                       .....+...+..+.+||.+||+.||++|||+.|+++||||+....
T Consensus       238 ---------------------------------~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~~  282 (343)
T 3dbq_A          238 ---------------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  282 (343)
T ss_dssp             ---------------------------------SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCCC
T ss_pred             ---------------------------------cccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCccccccCC
Confidence                                             001123333567899999999999999999999999999986543

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.5e-32  Score=256.59  Aligned_cols=180  Identities=30%  Similarity=0.516  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++...  ..++...+..++.||+.||.|||+. |++|+||||+||++.                   
T Consensus       177 lv~e~~~g~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-gi~H~Dlkp~NIl~~-------------------  234 (365)
T 2y7j_A          177 LVFDLMRKGELFDYLTEK--VALSEKETRSIMRSLLEAVSFLHAN-NIVHRDLKPENILLD-------------------  234 (365)
T ss_dssp             EEECCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEeCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEC-------------------
Confidence            589999 88999999875  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       235 -----------------------------------------------------~~~~ikl~DfG~~~~~~~~~~~~~~~g  261 (365)
T 2y7j_A          235 -----------------------------------------------------DNMQIRLSDFGFSCHLEPGEKLRELCG  261 (365)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCTTCCBCCCCS
T ss_pred             -----------------------------------------------------CCCCEEEEecCcccccCCCcccccCCC
Confidence                                                                 345799999999865542  3345678


Q ss_pred             CCCCcchHHhhcC------CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          158 TRQYRAPEVILRA------GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       158 ~~~y~aPE~~~~~------~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      |+.|+|||++.+.      .++.++|||||||++|+|++|..||...      .....+..+......++...       
T Consensus       262 t~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~-------  328 (365)
T 2y7j_A          262 TPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR------RQILMLRMIMEGQYQFSSPE-------  328 (365)
T ss_dssp             CGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCHHH-------
T ss_pred             CCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHhCCCCCCCcc-------
Confidence            9999999998743      5889999999999999999999999764      23333333322111111000       


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                     ....+..+.+||.+||+.||++|||+.|+++||||+.
T Consensus       329 -------------------------------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          329 -------------------------------WDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             -------------------------------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             -------------------------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccCC
Confidence                                           0122467899999999999999999999999999973

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.1e-33  Score=258.79  Aligned_cols=189  Identities=24%  Similarity=0.354  Sum_probs=146.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       136 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-------------------  193 (355)
T 1vzo_A          136 LILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILLD-------------------  193 (355)
T ss_dssp             EEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-------------------
T ss_pred             EEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 889999998763  599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       194 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  220 (355)
T 1vzo_A          194 -----------------------------------------------------SNGHVVLTDFGLSKEFVADETERAYDF  220 (355)
T ss_dssp             -----------------------------------------------------TTSCEEESCSSEEEECCGGGGGGGCGG
T ss_pred             -----------------------------------------------------CCCcEEEeeCCCCeecccCCCCcccCc
Confidence                                                                 345799999999865432    23345


Q ss_pred             CCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .||+.|+|||++.+.  .++.++|||||||++|+|++|..||......   ....   .+.                   
T Consensus       221 ~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~---~~~~---~~~-------------------  275 (355)
T 1vzo_A          221 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK---NSQA---EIS-------------------  275 (355)
T ss_dssp             GSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC---CCHH---HHH-------------------
T ss_pred             ccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc---chHH---HHH-------------------
Confidence            789999999999863  4789999999999999999999999754211   0111   111                   


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhhhh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~~~  308 (329)
                                         ..+.......+...+..+.+||.+||..||++||     |+.|+++||||...++..-..+
T Consensus       276 -------------------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~  336 (355)
T 1vzo_A          276 -------------------RRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAK  336 (355)
T ss_dssp             -------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTT
T ss_pred             -------------------HHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhc
Confidence                               0111111223444567889999999999999999     9999999999998876544433

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=4.7e-33  Score=272.02  Aligned_cols=188  Identities=26%  Similarity=0.374  Sum_probs=149.6

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||| |++|.+++....  ...+++..+..++.||+.||.|||++ ||+||||||+||++                  
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~-gIvHrDLKP~NILl------------------  322 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR-NIIYRDLKPENVLL------------------  322 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE------------------
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc-CCcccCCChHHEEE------------------
Confidence            589999 899999987643  34599999999999999999999995 99999999999999                  


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                            +....++|+|||++......   ...
T Consensus       323 ------------------------------------------------------~~~g~vkL~DFGla~~~~~~~~~~~~  348 (543)
T 3c4z_A          323 ------------------------------------------------------DDDGNVRISDLGLAVELKAGQTKTKG  348 (543)
T ss_dssp             ------------------------------------------------------CTTSCEEECCCTTCEECCTTCCCBCC
T ss_pred             ------------------------------------------------------eCCCCEEEeecceeeeccCCCccccc
Confidence                                                                  33457999999999655432   234


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+||+.|+|||++.+..++.++|+|||||++|+|++|..||......  ........                       
T Consensus       349 ~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~--~~~~~~~~-----------------------  403 (543)
T 3c4z_A          349 YAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK--VENKELKQ-----------------------  403 (543)
T ss_dssp             CCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC--CCHHHHHH-----------------------
T ss_pred             ccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc--hhHHHHHH-----------------------
Confidence            58999999999999999999999999999999999999999765210  00111111                       


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~  305 (329)
                                         .+.......+...+..+.+||++||+.||++||+     +.++++||||+.++|..-
T Consensus       404 -------------------~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l  460 (543)
T 3c4z_A          404 -------------------RVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQL  460 (543)
T ss_dssp             -------------------HHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHH
T ss_pred             -------------------HHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHH
Confidence                               1112222334455778999999999999999996     589999999999876543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=2.9e-33  Score=257.15  Aligned_cols=180  Identities=24%  Similarity=0.344  Sum_probs=140.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        82 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-givH~Dlkp~NIll~-------------------  139 (323)
T 3tki_A           82 LFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLD-------------------  139 (323)
T ss_dssp             EEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccccchHHEEEe-------------------
Confidence            589999 88999988765  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----ccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~  154 (329)
                                                                           ....++|+|||.+....     .....
T Consensus       140 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  166 (323)
T 3tki_A          140 -----------------------------------------------------ERDNLKISDFGLATVFRYNNRERLLNK  166 (323)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECEETTEECCBCS
T ss_pred             -----------------------------------------------------CCCCEEEEEeeccceeccCCcccccCC
Confidence                                                                 24579999999996443     12335


Q ss_pred             CCCCCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....     .......+......              
T Consensus       167 ~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~~~~~~~~~--------------  227 (323)
T 3tki_A          167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD-----SCQEYSDWKEKKTY--------------  227 (323)
T ss_dssp             CCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT-----TSHHHHHHHTTCTT--------------
T ss_pred             CccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch-----HHHHHHHHhccccc--------------
Confidence            678999999999998775 7899999999999999999999976521     11111111100000              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                                .......+..+.+||++||++||++|||+.|+++||||...
T Consensus       228 --------------------------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~  268 (323)
T 3tki_A          228 --------------------------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (323)
T ss_dssp             --------------------------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             --------------------------CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence                                      00012335678899999999999999999999999999864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.1e-33  Score=249.22  Aligned_cols=179  Identities=28%  Similarity=0.490  Sum_probs=121.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||++.                   
T Consensus        88 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nili~-------------------  146 (278)
T 3cok_A           88 LVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHSH-GILHRDLTLSNLLLT-------------------  146 (278)
T ss_dssp             EEEECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSSCCGGGEEEC-------------------
T ss_pred             EEEecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHEEEc-------------------
Confidence            589999 889999998643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       147 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  173 (278)
T 3cok_A          147 -----------------------------------------------------RNMNIKIADFGLATQLKMPHEKHYTLC  173 (278)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECC----------
T ss_pred             -----------------------------------------------------CCCCEEEEeecceeeccCCCCcceecc
Confidence                                                                 245799999999865542   223456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|||||||++|+|++|..||......      ..+..                        
T Consensus       174 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~~------------------------  223 (278)
T 3cok_A          174 GTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK------NTLNK------------------------  223 (278)
T ss_dssp             ------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----------------------------------
T ss_pred             CCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH------HHHHH------------------------
Confidence            789999999999988999999999999999999999999765211      00000                        


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                        ........+...+..+.+||.+||+.||++|||+.++++||||....
T Consensus       224 ------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          224 ------------------VVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             ------------------CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             ------------------HhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence                              00001112333467889999999999999999999999999998754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=250.83  Aligned_cols=212  Identities=28%  Similarity=0.480  Sum_probs=153.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||++++|.+++..   ..++...+..++.||+.||+|||++ ||+||||||+||+++..                  
T Consensus        99 lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~------------------  156 (320)
T 2i6l_A           99 IVQEYMETDLANVLEQ---GPLLEEHARLFMYQLLRGLKYIHSA-NVLHRDLKPANLFINTE------------------  156 (320)
T ss_dssp             EEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEETT------------------
T ss_pred             EEeeccCCCHHHHhhc---CCccHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEEcCC------------------
Confidence            5899997799999865   3589999999999999999999995 99999999999999421                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------cccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~~  154 (329)
                                                                           ...++|+|||.+.....      ....
T Consensus       157 -----------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~  183 (320)
T 2i6l_A          157 -----------------------------------------------------DLVLKIGDFGLARIMDPHYSHKGHLSE  183 (320)
T ss_dssp             -----------------------------------------------------TTEEEECCCTTCBCC--------CCCG
T ss_pred             -----------------------------------------------------CCeEEEccCccccccCCCccccccccc
Confidence                                                                 34789999999865432      2233


Q ss_pred             CCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC-CCc
Q 020248          155 EIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA-QSK  232 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~  232 (329)
                      ..++..|+|||++.+ ..++.++|||||||++|+|++|..||.+.      .....+..+....+........... ...
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (320)
T 2i6l_A          184 GLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA------HELEQMQLILESIPVVHEEDRQELLSVIP  257 (320)
T ss_dssp             GGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHSCCCCHHHHHHHHTTSC
T ss_pred             ccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCchhhhhhhhhcCc
Confidence            456888999999886 67899999999999999999999999876      4566677777666655544332110 000


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhh
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~  306 (329)
                      .+.....      .........       .....+..+.+||.+||+.||++|||+.|+++||||+....+..+
T Consensus       258 ~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~~~  318 (320)
T 2i6l_A          258 VYIRNDM------TEPHKPLTQ-------LLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDE  318 (320)
T ss_dssp             HHHHHHT------TSCCCCHHH-------HSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC----
T ss_pred             ccccccc------cCCCCChhH-------hcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCccCC
Confidence            0000000      000000011       112346789999999999999999999999999999988766543

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=9.4e-33  Score=267.40  Aligned_cols=187  Identities=31%  Similarity=0.480  Sum_probs=145.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+....  .+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        98 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dlkp~Nil~~~~-----------------  157 (486)
T 3mwu_A           98 IVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESK-----------------  157 (486)
T ss_dssp             EEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEESSS-----------------
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCchHHEEEecC-----------------
Confidence            589999 899999888763  499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       158 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  185 (486)
T 3mwu_A          158 ----------------------------------------------------EKDCDIKIIDFGLSTCFQQNTKMKDRIG  185 (486)
T ss_dssp             ----------------------------------------------------STTCCEEECSCSCTTTBCCC----CCTT
T ss_pred             ----------------------------------------------------CCCCCEEEEECCcCeECCCCCccCCCcC
Confidence                                                                2234699999999865442  3345678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+ .++.++||||+||++|+|++|..||.+.      +....+..+......++.               
T Consensus       186 t~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~---------------  243 (486)
T 3mwu_A          186 TAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK------NEYDILKRVETGKYAFDL---------------  243 (486)
T ss_dssp             GGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCSCS---------------
T ss_pred             CCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCCC---------------
Confidence            999999999876 5999999999999999999999999765      334444433221111000               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                             +.....+..+.+||++||++||++|||+.|+++||||+......
T Consensus       244 -----------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~~~~  287 (486)
T 3mwu_A          244 -----------------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSET  287 (486)
T ss_dssp             -----------------------GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTCCCC
T ss_pred             -----------------------cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCcccC
Confidence                                   00122356889999999999999999999999999998765443

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.3e-32  Score=267.08  Aligned_cols=184  Identities=30%  Similarity=0.468  Sum_probs=145.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+....  .++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       113 lv~e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~-----------------  172 (494)
T 3lij_A          113 LVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKH-NIVHRDLKPENLLLESK-----------------  172 (494)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCS-----------------
T ss_pred             EEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CceeccCChhhEEEeCC-----------------
Confidence            589999 889999888763  499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          +....++|+|||.+.....  ......|
T Consensus       173 ----------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~g  200 (494)
T 3lij_A          173 ----------------------------------------------------EKDALIKIVDFGLSAVFENQKKMKERLG  200 (494)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECBTTBCBCCCCS
T ss_pred             ----------------------------------------------------CCCCcEEEEECCCCeECCCCccccccCC
Confidence                                                                1234689999999865543  3345678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++. ..++.++||||+||++|+|++|..||.+.      .....+..+......++...             
T Consensus       201 t~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~-------------  260 (494)
T 3lij_A          201 TAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ------TDQEILRKVEKGKYTFDSPE-------------  260 (494)
T ss_dssp             CTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCSGG-------------
T ss_pred             CcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCCchh-------------
Confidence            99999999876 46999999999999999999999999875      33444443332111111000             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                               ....+..+.+||++||++||++|||+.|+++||||+...
T Consensus       261 -------------------------~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~~  299 (494)
T 3lij_A          261 -------------------------WKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEMC  299 (494)
T ss_dssp             -------------------------GTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHHH
T ss_pred             -------------------------cccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccCc
Confidence                                     012356789999999999999999999999999998653

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.98  E-value=1.9e-32  Score=247.20  Aligned_cols=179  Identities=26%  Similarity=0.417  Sum_probs=139.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ |  ++||||||+||++..                
T Consensus       106 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~----------------  166 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG----------------  166 (290)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESS----------------
T ss_pred             EEEEecCCCCHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHcC-CCCEEECCCCHHHEEEEC----------------
Confidence            589999 88999999876  3489999999999999999999995 8  999999999999931                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-cccCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-FAEEI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~  156 (329)
                                                                             ....++|+|||.+...... .....
T Consensus       167 -------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~  191 (290)
T 1t4h_A          167 -------------------------------------------------------PTGSVKIGDLGLATLKRASFAKAVI  191 (290)
T ss_dssp             -------------------------------------------------------TTSCEEECCTTGGGGCCTTSBEESC
T ss_pred             -------------------------------------------------------CCCCEEEeeCCCccccccccccccc
Confidence                                                                   2347999999999654432 33456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+ .++.++|||||||++|+|++|..||....      ....+..... .+..+.              
T Consensus       192 ~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~-~~~~~~--------------  249 (290)
T 1t4h_A          192 GTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYRRVT-SGVKPA--------------  249 (290)
T ss_dssp             SSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHHHHT-TTCCCG--------------
T ss_pred             CCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcC------cHHHHHHHHh-ccCCcc--------------
Confidence            8999999998764 58999999999999999999999997642      2222111110 000000              


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                              ..+...+..+.+||.+||+.||++|||+.|+++||||++
T Consensus       250 ------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~  288 (290)
T 1t4h_A          250 ------------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             ------------------------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             ------------------------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCccccc
Confidence                                    011222467899999999999999999999999999986

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.98  E-value=6.6e-33  Score=267.52  Aligned_cols=177  Identities=29%  Similarity=0.477  Sum_probs=144.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||+++                   
T Consensus        93 lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDLkp~NIll~-------------------  150 (476)
T 2y94_A           93 MVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYCHRH-MVVHRDLKPENVLLD-------------------  150 (476)
T ss_dssp             EEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcccccHHHEEEe-------------------
Confidence            589999 99999999764  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  .....+|
T Consensus       151 -----------------------------------------------------~~~~vkL~DFG~a~~~~~~~~~~~~~g  177 (476)
T 2y94_A          151 -----------------------------------------------------AHMNAKIADFGLSNMMSDGEFLRTSCG  177 (476)
T ss_dssp             -----------------------------------------------------TTCCEEECCCSSCEECCTTCCBCCCCS
T ss_pred             -----------------------------------------------------cCCCeEEEeccchhhccccccccccCC
Confidence                                                                 345799999999965543  2345678


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+..+ +.++|||||||++|+|++|..||...      +.......+.                      
T Consensus       178 t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~------~~~~~~~~i~----------------------  229 (476)
T 2y94_A          178 SPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD------HVPTLFKKIC----------------------  229 (476)
T ss_dssp             CSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS------SSHHHHHHHH----------------------
T ss_pred             CcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC------CHHHHHHHHh----------------------
Confidence            999999999998765 78999999999999999999999764      2222222221                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                          ......+...+..+.+||++||+.||++|||+.|+++||||+..
T Consensus       230 --------------------~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          230 --------------------DGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             --------------------TTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             --------------------cCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence                                11112233345688999999999999999999999999999753

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.98  E-value=2.7e-33  Score=253.86  Aligned_cols=176  Identities=23%  Similarity=0.413  Sum_probs=136.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++..   ..++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       115 lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~-------------------  171 (298)
T 2zv2_A          115 MVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQ-KIIHRDIKPSNLLVG-------------------  171 (298)
T ss_dssp             EEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEC-------------------
Confidence            589999 7888875443   4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       172 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  198 (298)
T 2zv2_A          172 -----------------------------------------------------EDGHIKIADFGVSNEFKGSDALLSNTV  198 (298)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECSSSSCEECCCC
T ss_pred             -----------------------------------------------------CCCCEEEecCCCccccccccccccCCc
Confidence                                                                 2457999999999655432   24457


Q ss_pred             CCCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          157 QTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ||+.|+|||++.+..   ++.++|||||||++|+|++|..||...      ........+.......             
T Consensus       199 gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~------~~~~~~~~~~~~~~~~-------------  259 (298)
T 2zv2_A          199 GTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE------RIMCLHSKIKSQALEF-------------  259 (298)
T ss_dssp             SCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHCCCCC-------------
T ss_pred             CCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc------cHHHHHHHHhcccCCC-------------
Confidence            899999999998765   378899999999999999999999754      1111111111100000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                                 +.....+..+.+||.+||+.||++|||+.|+++||||+
T Consensus       260 ---------------------------~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          260 ---------------------------PDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             ---------------------------CSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             ---------------------------CCccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence                                       00122356889999999999999999999999999996

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.98  E-value=1.1e-32  Score=252.31  Aligned_cols=206  Identities=23%  Similarity=0.342  Sum_probs=151.6

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||+ |++|.+++..... ..++...+..++.||+.||.|||++ ||+||||||+||++....               
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~---------------  149 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGE---------------  149 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEECT---------------
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC-CEecCCCCHHHEEEeccC---------------
Confidence            589999 8999999987643 2389999999999999999999995 999999999999983321               


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~  156 (329)
                                                                           +....++|+|||.+.....  ......
T Consensus       150 -----------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~  176 (319)
T 4euu_A          150 -----------------------------------------------------DGQSVYKLTDFGAARELEDDEQFVSLY  176 (319)
T ss_dssp             -----------------------------------------------------TSCEEEEECCCTTCEECCTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCceEEEccCCCceecCCCCceeecc
Confidence                                                                 1234689999999966543  334557


Q ss_pred             CCCCCcchHHhh--------cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          157 QTRQYRAPEVIL--------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       157 ~~~~y~aPE~~~--------~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      |++.|+|||++.        +..++.++|||||||++|+|++|..||....     ........+..+++..|...+...
T Consensus       177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~  251 (319)
T 4euu_A          177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE-----GPRRNKEVMYKIITGKPSGAISGV  251 (319)
T ss_dssp             SCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTT-----CGGGCHHHHHHHHHHCCTTCCEEE
T ss_pred             cCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----ccchhHHHHHHHhcCCCcccchhh
Confidence            899999999987        4678999999999999999999999997653     223334444444444444333221


Q ss_pred             CCCc-cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          229 AQSK-DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       229 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                      .... ..++..               ..+......+...+..+.+||++||++||++|||++|+++||
T Consensus       252 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~  304 (319)
T 4euu_A          252 QKAENGPIDWS---------------GDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAET  304 (319)
T ss_dssp             ECSTTCCEEEE---------------SSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred             hcccCCccccC---------------ccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence            1111 111100               001111234567788999999999999999999999999986

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.98  E-value=1.2e-32  Score=259.71  Aligned_cols=182  Identities=24%  Similarity=0.438  Sum_probs=138.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||+.|++|.+++....  .++...+..++.||+.||.|||+. ||+||||||+||++.                    
T Consensus       133 lv~E~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~-~ivHrDlkp~NIll~--------------------  189 (390)
T 2zmd_A          133 MVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIV--------------------  189 (390)
T ss_dssp             EEEECCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCCGGGEEES--------------------
T ss_pred             EEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHEEEE--------------------
Confidence            589977899999998763  588999999999999999999995 999999999999992                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                           ...++|+|||++......     ....
T Consensus       190 -----------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~~  216 (390)
T 2zmd_A          190 -----------------------------------------------------DGMLKLIDFGIANQMQPDTTSVVKDSQ  216 (390)
T ss_dssp             -----------------------------------------------------SSCEEECCCSSSCCC---------CCS
T ss_pred             -----------------------------------------------------CCeEEEEecCccccccCCCccccCCCC
Confidence                                                                 136899999999655421     2345


Q ss_pred             CCCCCCcchHHhhc-----------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          156 IQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      +||+.|+|||++.+           ..++.++|||||||++|+|++|..||....     +....   +..++....   
T Consensus       217 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~-----~~~~~---~~~~~~~~~---  285 (390)
T 2zmd_A          217 VGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----NQISK---LHAIIDPNH---  285 (390)
T ss_dssp             CCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC-----CHHHH---HHHHHCTTS---
T ss_pred             CcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh-----HHHHH---HHHHhCccc---
Confidence            78999999999976           368999999999999999999999997542     11111   211111100   


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                        ....+...+..+.+||++||+.||++|||+.|+++||||.....+
T Consensus       286 ----------------------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~~~  330 (390)
T 2zmd_A          286 ----------------------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTHP  330 (390)
T ss_dssp             ----------------------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC--
T ss_pred             ----------------------------------cCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcCccccCcc
Confidence                                              001122235678999999999999999999999999999865433

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.98  E-value=8.8e-33  Score=255.29  Aligned_cols=172  Identities=26%  Similarity=0.437  Sum_probs=140.1

Q ss_pred             Cccccc-ch-hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GD-SLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~-sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ ++ +|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||+++                  
T Consensus       106 lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~------------------  164 (335)
T 3dls_A          106 LVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLK-DIIHRDIKDENIVIA------------------  164 (335)
T ss_dssp             EEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC------------------
T ss_pred             EEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeEEeccCHHHEEEc------------------
Confidence            589998 44 9999998763  499999999999999999999995 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~  156 (329)
                                                                            ....++|+|||.+.....  ......
T Consensus       165 ------------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~  190 (335)
T 3dls_A          165 ------------------------------------------------------EDFTIKLIDFGSAAYLERGKLFYTFC  190 (335)
T ss_dssp             ------------------------------------------------------TTSCEEECCCTTCEECCTTCCBCEEC
T ss_pred             ------------------------------------------------------CCCcEEEeecccceECCCCCceeccC
Confidence                                                                  345799999999965543  233457


Q ss_pred             CCCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ||+.|+|||++.+..+ +.++|||||||++|+|++|..||.....                                   
T Consensus       191 gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----------------------------------  235 (335)
T 3dls_A          191 GTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE-----------------------------------  235 (335)
T ss_dssp             SCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-----------------------------------
T ss_pred             CCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH-----------------------------------
Confidence            8999999999998876 8899999999999999999999965310                                   


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         ........+...+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       236 -------------------~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          236 -------------------TVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             -------------------GTTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             -------------------HHhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence                               00000111222456899999999999999999999999999998643

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.98  E-value=2e-32  Score=246.81  Aligned_cols=183  Identities=31%  Similarity=0.449  Sum_probs=136.7

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.||+.||.|||++ ||+||||||+||++...               
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dikp~NIl~~~~---------------  160 (285)
T 3is5_A           97 IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ-HVVHKDLKPENILFQDT---------------  160 (285)
T ss_dssp             EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEESSS---------------
T ss_pred             EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC-CEEECCCCHHHEEEecC---------------
Confidence            589999 889999886542  35599999999999999999999995 99999999999999432               


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEE  155 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~  155 (329)
                                                                            .....++|+|||.+.....  .....
T Consensus       161 ------------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~  186 (285)
T 3is5_A          161 ------------------------------------------------------SPHSPIKIIDFGLAELFKSDEHSTNA  186 (285)
T ss_dssp             ------------------------------------------------------STTCCEEECCCCCCCC----------
T ss_pred             ------------------------------------------------------CCCCCEEEEeeecceecCCcccCcCc
Confidence                                                                  1235799999999965432  23455


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .+++.|+|||++. ..++.++|||||||++|+|++|..||.+..      .......+. .....             + 
T Consensus       187 ~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~------~~~~~~~~~-~~~~~-------------~-  244 (285)
T 3is5_A          187 AGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS------LEEVQQKAT-YKEPN-------------Y-  244 (285)
T ss_dssp             CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH-HCCCC-------------C-
T ss_pred             ccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC------HHHHHhhhc-cCCcc-------------c-
Confidence            7899999999875 568999999999999999999999997652      121111111 00000             0 


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                              .......+..+.+||.+||+.||++|||+.|+++||||+.
T Consensus       245 ------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          245 ------------------------AVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             ------------------------CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             ------------------------ccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence                                    0000113567889999999999999999999999999985

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.98  E-value=8.9e-33  Score=248.58  Aligned_cols=178  Identities=22%  Similarity=0.402  Sum_probs=144.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||.|||++ |++||||||+||+++                   
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  148 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHER-KVIHRDIKPENLLMG-------------------  148 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHHEEEc-------------------
Confidence            589999 889999998763  489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......++
T Consensus       149 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  175 (284)
T 2vgo_A          149 -----------------------------------------------------YKGELKIADFGWSVHAPSLRRRTMCGT  175 (284)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECSSSCBCCCCSC
T ss_pred             -----------------------------------------------------CCCCEEEecccccccCcccccccccCC
Confidence                                                                 245799999999865443 23445788


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||...      ........+..                       
T Consensus       176 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~~~~-----------------------  226 (284)
T 2vgo_A          176 LDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP------SHTETHRRIVN-----------------------  226 (284)
T ss_dssp             GGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHT-----------------------
T ss_pred             CCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC------CHhHHHHHHhc-----------------------
Confidence            9999999999999999999999999999999999999764      22222222211                       


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         .....+...+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       227 -------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~  270 (284)
T 2vgo_A          227 -------------------VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANS  270 (284)
T ss_dssp             -------------------TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHC
T ss_pred             -------------------cccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhc
Confidence                               11112333466889999999999999999999999999998543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.98  E-value=1.1e-32  Score=248.23  Aligned_cols=184  Identities=27%  Similarity=0.421  Sum_probs=133.6

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||++++|.+++...  ....++...+..++.||+.||.|||++.|++||||||+||+++                  
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~------------------  144 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLIN------------------  144 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEEC------------------
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEEC------------------
Confidence            58999977988887653  2346999999999999999999999844999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~  156 (329)
                                                                            ....++|+|||.+......  .....
T Consensus       145 ------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~  170 (290)
T 3fme_A          145 ------------------------------------------------------ALGQVKMCDFGISGYLVDDVAKDIDA  170 (290)
T ss_dssp             ------------------------------------------------------TTCCEEBCCC---------------C
T ss_pred             ------------------------------------------------------CCCCEEEeecCCcccccccccccccC
Confidence                                                                  2457999999998655432  23346


Q ss_pred             CCCCCcchHHh----hcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          157 QTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       157 ~~~~y~aPE~~----~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      +++.|+|||++    .+..++.++||||+||++|+|++|..||....     .....+..+...  ..+           
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~--~~~-----------  232 (290)
T 3fme_A          171 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG-----TPFQQLKQVVEE--PSP-----------  232 (290)
T ss_dssp             CCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCS-----CHHHHHHHHHHS--CCC-----------
T ss_pred             CCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccC-----chHHHHHHHhcc--CCC-----------
Confidence            89999999997    45578999999999999999999999997531     222222222110  000           


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                 .......+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       233 ---------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~~  274 (290)
T 3fme_A          233 ---------------------------QLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLHE  274 (290)
T ss_dssp             ---------------------------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             ---------------------------CcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccCc
Confidence                                       001123456899999999999999999999999999998643

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.98  E-value=6.3e-33  Score=268.38  Aligned_cols=185  Identities=26%  Similarity=0.431  Sum_probs=146.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+.+...  ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       103 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~-----------------  162 (484)
T 3nyv_A          103 LVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITYMHKN-KIVHRDLKPENLLLESK-----------------  162 (484)
T ss_dssp             EEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS-----------------
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeeCCCCHHHEEEecC-----------------
Confidence            589999 89999998865  3599999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......|
T Consensus       163 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  190 (484)
T 3nyv_A          163 ----------------------------------------------------SKDANIRIIDFGLSTHFEASKKMKDKIG  190 (484)
T ss_dssp             ----------------------------------------------------STTCCEEECCTTHHHHBCCCCSHHHHTT
T ss_pred             ----------------------------------------------------CCCCcEEEEeeeeeEEcccccccccCCC
Confidence                                                                1245799999999865443  2344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+ .++.++||||+||++|+|++|..||.+.      +....+..+......++.               
T Consensus       191 t~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~---------------  248 (484)
T 3nyv_A          191 TAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA------NEYDILKKVEKGKYTFEL---------------  248 (484)
T ss_dssp             GGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHCCCCCCS---------------
T ss_pred             CccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHcCCCCCCC---------------
Confidence            999999999876 6999999999999999999999999875      344444443321111000               


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                             +.....+..+.+||++||++||++|||+.|+++||||+....
T Consensus       249 -----------------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~~  290 (484)
T 3nyv_A          249 -----------------------PQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTK  290 (484)
T ss_dssp             -----------------------GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHTC
T ss_pred             -----------------------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccccc
Confidence                                   001223568899999999999999999999999999987654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.98  E-value=2.4e-33  Score=259.04  Aligned_cols=190  Identities=28%  Similarity=0.380  Sum_probs=125.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~-~ivH~dlkp~NIll~~~-----------------  164 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH-NIAHRDVKPENLLYTSK-----------------  164 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCS-----------------
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEEec-----------------
Confidence            589999 88999999987656799999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                          +....++|+|||.+..... ......++
T Consensus       165 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~t  192 (336)
T 3fhr_A          165 ----------------------------------------------------EKDAVLKLTDFGFAKETTQNALQTPCYT  192 (336)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEEC-----------
T ss_pred             ----------------------------------------------------CCCceEEEeccccceeccccccccCCCC
Confidence                                                                1234689999999965543 23445678


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.......      ....+.....            .       
T Consensus       193 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~~~~~~~~~~------------~-------  247 (336)
T 3fhr_A          193 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQA------ISPGMKRRIR------------L-------  247 (336)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------------------------------
T ss_pred             cCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchh------hhhhHHHhhh------------c-------
Confidence            99999999988889999999999999999999999997652110      0000000000            0       


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                     .............+..+.+||++||+.||++|||+.|+++||||+..
T Consensus       248 ---------------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  294 (336)
T 3fhr_A          248 ---------------GQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQS  294 (336)
T ss_dssp             ------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTG
T ss_pred             ---------------cccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcccccc
Confidence                           00000000112346789999999999999999999999999999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.98  E-value=2.7e-32  Score=265.32  Aligned_cols=186  Identities=29%  Similarity=0.441  Sum_probs=146.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus       123 lv~e~~~gg~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~Nil~~~~-----------------  182 (504)
T 3q5i_A          123 LVTEFYEGGELFEQIINR--HKFDECDAANIMKQILSGICYLHKH-NIVHRDIKPENILLENK-----------------  182 (504)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESST-----------------
T ss_pred             EEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCcHHHEEEecC-----------------
Confidence            589999 88999998876  3499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          +....++|+|||.+.....  ......|
T Consensus       183 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~g  210 (504)
T 3q5i_A          183 ----------------------------------------------------NSLLNIKIVDFGLSSFFSKDYKLRDRLG  210 (504)
T ss_dssp             ----------------------------------------------------TCCSSEEECCCTTCEECCTTSCBCCCCS
T ss_pred             ----------------------------------------------------CCCccEEEEECCCCEEcCCCCccccccC
Confidence                                                                1234699999999965543  3345678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+ .++.++||||+||++|+|++|..||.+.      +....+..+....-.++...             
T Consensus       211 t~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~-------------  270 (504)
T 3q5i_A          211 TAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQ------NDQDIIKKVEKGKYYFDFND-------------  270 (504)
T ss_dssp             CTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHCCCCCCHHH-------------
T ss_pred             CcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHcCCCCCCccc-------------
Confidence            999999999774 6899999999999999999999999875      34444444432111111000             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                               ....+..+.+||++||++||++|||+.|+|+||||+.....
T Consensus       271 -------------------------~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~~  311 (504)
T 3q5i_A          271 -------------------------WKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANN  311 (504)
T ss_dssp             -------------------------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTCCC
T ss_pred             -------------------------cCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhchhc
Confidence                                     01235689999999999999999999999999999875443

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.98  E-value=3.3e-32  Score=249.34  Aligned_cols=177  Identities=23%  Similarity=0.352  Sum_probs=135.5

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||| |++|.+++..... ...+...+..++.||+.||+|||++ ||+||||||+||++.                  
T Consensus       138 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~------------------  198 (332)
T 3qd2_B          138 IQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFFT------------------  198 (332)
T ss_dssp             EEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC------------------
T ss_pred             EEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhC-CeeecCCCcccEEEe------------------
Confidence            589999 8999999987532 1245556899999999999999995 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------  151 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------  151 (329)
                                                                            ....++|+|||.+......       
T Consensus       199 ------------------------------------------------------~~~~~kL~DfG~a~~~~~~~~~~~~~  224 (332)
T 3qd2_B          199 ------------------------------------------------------MDDVVKVGDFGLVTAMDQDEEEQTVL  224 (332)
T ss_dssp             ------------------------------------------------------TTCCEEECCCTTCEECSCC-------
T ss_pred             ------------------------------------------------------CCCCEEEeecCcccccccchhhcccc
Confidence                                                                  2457999999998655432       


Q ss_pred             --------cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHH-hCCCcH
Q 020248          152 --------FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMEL-IGKMPR  222 (329)
Q Consensus       152 --------~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~-~g~~p~  222 (329)
                              .....||+.|+|||++.+..++.++|||||||++|+|++|..|+...           ...+... .+..|.
T Consensus       225 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-----------~~~~~~~~~~~~~~  293 (332)
T 3qd2_B          225 TPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-----------VRIITDVRNLKFPL  293 (332)
T ss_dssp             -------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-----------HHHHHHHHTTCCCH
T ss_pred             ccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-----------HHHHHHhhccCCCc
Confidence                    23346899999999999999999999999999999999987655311           1111111 111111


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .                                       .......+.+||++||+.||++|||+.|+++||||+.+
T Consensus       294 ~---------------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~~  332 (332)
T 3qd2_B          294 L---------------------------------------FTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENL  332 (332)
T ss_dssp             H---------------------------------------HHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCCC
T ss_pred             c---------------------------------------cccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhcC
Confidence            0                                       01123567899999999999999999999999999863

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.98  E-value=8.2e-33  Score=263.11  Aligned_cols=186  Identities=30%  Similarity=0.443  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||++...                 
T Consensus       216 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~NIll~~~-----------------  275 (419)
T 3i6u_A          216 IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQ-----------------  275 (419)
T ss_dssp             EEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS-----------------
T ss_pred             EEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecC-----------------
Confidence            589999 88999887755  4599999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                          +....++|+|||.+......  .....|
T Consensus       276 ----------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~~~~~g  303 (419)
T 3i6u_A          276 ----------------------------------------------------EEDCLIKITDFGHSKILGETSLMRTLCG  303 (419)
T ss_dssp             ----------------------------------------------------SSSCCEEECCSSTTTSCC----------
T ss_pred             ----------------------------------------------------CCcceEEEeecccceecCCCccccccCC
Confidence                                                                12346999999999665432  344578


Q ss_pred             CCCCcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 TRQYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      |+.|+|||++.+   ..++.++|||||||++|+|++|..||.....     .......+....-..++            
T Consensus       304 t~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~-----~~~~~~~i~~~~~~~~~------------  366 (419)
T 3i6u_A          304 TPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-----QVSLKDQITSGKYNFIP------------  366 (419)
T ss_dssp             -CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSS-----SCCHHHHHHTTCCCCCH------------
T ss_pred             CCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcc-----hHHHHHHHhcCCCCCCc------------
Confidence            999999999864   5688999999999999999999999976421     11111111100000000            


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         ..       ....+..+.+||.+||++||++|||++|+++||||+...
T Consensus       367 -------------------~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          367 -------------------EV-------WAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             -------------------HH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred             -------------------hh-------hcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence                               00       012356889999999999999999999999999998654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.98  E-value=1.3e-32  Score=254.06  Aligned_cols=187  Identities=27%  Similarity=0.390  Sum_probs=140.3

Q ss_pred             Cccccc-chhHHHHHHhhc--------------------------------------CCCcchHHHHHHHHHHHHHHHHH
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------------------------------YKGLELNKVREICKYILTGLDYL   41 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------------------------------~~~l~~~~~~~i~~qll~al~~l   41 (329)
                      |||||| |++|.+++....                                      ...+++..+..++.||+.||.||
T Consensus       105 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L  184 (345)
T 3hko_A          105 LVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYL  184 (345)
T ss_dssp             EEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence            589999 999999885211                                      11246778999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCc
Q 020248           42 HRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGI  121 (329)
Q Consensus        42 H~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (329)
                      |++ ||+||||||+||++...                                                           
T Consensus       185 H~~-~ivH~Dlkp~NIll~~~-----------------------------------------------------------  204 (345)
T 3hko_A          185 HNQ-GICHRDIKPENFLFSTN-----------------------------------------------------------  204 (345)
T ss_dssp             HHT-TEECCCCCGGGEEESCS-----------------------------------------------------------
T ss_pred             HHC-CccccCCChhhEEEecC-----------------------------------------------------------
Confidence            995 99999999999999321                                                           


Q ss_pred             cCCCCCccCCCCCCceEEeecCccccccc-------ccccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCC
Q 020248          122 ELPKPERCLDGIDMRCKVVDFGNACRANK-------QFAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGD  192 (329)
Q Consensus       122 ~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~  192 (329)
                                 ....++|+|||.+.....       ......|++.|+|||++.+  ..++.++|||||||++|+|++|.
T Consensus       205 -----------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~  273 (345)
T 3hko_A          205 -----------KSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGA  273 (345)
T ss_dssp             -----------SSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------CCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence                       123799999999965432       2345578999999999976  57899999999999999999999


Q ss_pred             cCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHH
Q 020248          193 MLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAE  272 (329)
Q Consensus       193 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  272 (329)
                      .||.+.      .....+..+......++.                                      +.....+..+.+
T Consensus       274 ~pf~~~------~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~  309 (345)
T 3hko_A          274 VPFPGV------NDADTISQVLNKKLCFEN--------------------------------------PNYNVLSPLARD  309 (345)
T ss_dssp             CSSCCS------SHHHHHHHHHHCCCCTTS--------------------------------------GGGGGSCHHHHH
T ss_pred             CCCCCC------ChHHHHHHHHhcccccCC--------------------------------------cccccCCHHHHH
Confidence            999765      333333333221111000                                      001123568899


Q ss_pred             HHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          273 FLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       273 ll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      ||.+||..||++|||+.|+++||||+...+
T Consensus       310 li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          310 LLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             HHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             HHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            999999999999999999999999998764

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.98  E-value=2.2e-32  Score=245.34  Aligned_cols=195  Identities=23%  Similarity=0.322  Sum_probs=138.7

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.....  ..++...+..++.||+.||.|||++ ||+||||||+||++.............     
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~~~~~~~~~~~~-----  161 (289)
T 1x8b_A           88 IQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM-SLVHMDIKPSNIFISRTSIPNAASEEG-----  161 (289)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-----------------
T ss_pred             EEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC-CEeecCCCHHHEEEcCCCCCccccccc-----
Confidence            589999 8899999987532  4589999999999999999999995 999999999999995321000000000     


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ  157 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~  157 (329)
                                                                      ...........++|+|||.+....... ...+
T Consensus       162 ------------------------------------------------~~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~g  192 (289)
T 1x8b_A          162 ------------------------------------------------DEDDWASNKVMFKIGDLGHVTRISSPQ-VEEG  192 (289)
T ss_dssp             --------------------------------------------------------CCCEEECCCTTCEETTCSC-CCCC
T ss_pred             ------------------------------------------------ccccccCCceEEEEcccccccccCCcc-ccCC
Confidence                                                            000000124578999999997665443 3468


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+. .++.++|||||||++|+|++|..++...         .....+..  +..                
T Consensus       193 t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---------~~~~~~~~--~~~----------------  245 (289)
T 1x8b_A          193 DSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---------DQWHEIRQ--GRL----------------  245 (289)
T ss_dssp             CGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS---------HHHHHHHT--TCC----------------
T ss_pred             CccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch---------hHHHHHHc--CCC----------------
Confidence            9999999999876 5678999999999999999998876432         11111100  000                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                             ...+...+..+.+||.+||+.||++|||+.|+++||||...
T Consensus       246 -----------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          246 -----------------------PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSA  286 (289)
T ss_dssp             -----------------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC---
T ss_pred             -----------------------CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhh
Confidence                                   01223346789999999999999999999999999999864

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=3.9e-32  Score=252.29  Aligned_cols=182  Identities=29%  Similarity=0.397  Sum_probs=143.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||.++|.+++.... ..++...+..++.|++.||.|||++ ||+||||||+||+++.                   
T Consensus       131 lv~e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~-------------------  189 (348)
T 1u5q_A          131 LVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSE-------------------  189 (348)
T ss_dssp             EEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEET-------------------
T ss_pred             EEEecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHEEECC-------------------
Confidence            589999778888886543 4699999999999999999999995 9999999999999933                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                           ...++|+|||.+...... ....|++.
T Consensus       190 -----------------------------------------------------~~~~kL~DfG~a~~~~~~-~~~~gt~~  215 (348)
T 1u5q_A          190 -----------------------------------------------------PGLVKLGDFGSASIMAPA-NSFVGTPY  215 (348)
T ss_dssp             -----------------------------------------------------TTEEEECCCTTCBSSSSB-CCCCSCGG
T ss_pred             -----------------------------------------------------CCCEEEeeccCceecCCC-CcccCCcc
Confidence                                                                 457999999999655433 45678999


Q ss_pred             CcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          161 YRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       161 y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+|||++.   +..++.++|||||||++|+|++|..||...      +....+..+..  +..|                
T Consensus       216 y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~------~~~~~~~~~~~--~~~~----------------  271 (348)
T 1u5q_A          216 WMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM------NAMSALYHIAQ--NESP----------------  271 (348)
T ss_dssp             GCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SCCC----------------
T ss_pred             eeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHh--cCCC----------------
Confidence            99999986   456899999999999999999999999765      22333322221  1100                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            ...+...+..+.+||.+||+.||++|||+.++++||||.....+
T Consensus       272 ----------------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~~~  315 (348)
T 1u5q_A          272 ----------------------ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERPP  315 (348)
T ss_dssp             ----------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCCT
T ss_pred             ----------------------CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhccCCc
Confidence                                  00112235678999999999999999999999999999875543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.2e-32  Score=250.66  Aligned_cols=184  Identities=32%  Similarity=0.511  Sum_probs=139.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||++ |++|+||||+||++.                   
T Consensus       104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~-------------------  163 (326)
T 2x7f_A          104 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH-KVIHRDIKGQNVLLT-------------------  163 (326)
T ss_dssp             EEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEC-------------------
T ss_pred             EEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCcHHHEEEc-------------------
Confidence            589999 78999999876555699999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       164 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  190 (326)
T 2x7f_A          164 -----------------------------------------------------ENAEVKLVDFGVSAQLDRTVGRRNTFI  190 (326)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTTC-------------
T ss_pred             -----------------------------------------------------CCCCEEEeeCcCceecCcCcccccccc
Confidence                                                                 245799999999865443   223456


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      +++.|+|||++.     +..++.++|||||||++|+|++|..||...      .....+..+..  +..|.         
T Consensus       191 ~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~~~~---------  253 (326)
T 2x7f_A          191 GTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM------HPMRALFLIPR--NPAPR---------  253 (326)
T ss_dssp             CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SCCCC---------
T ss_pred             CCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC------cHHHHHHHhhc--Ccccc---------
Confidence            889999999987     556899999999999999999999999765      22222222111  11000         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                   ......+..+.+||.+||..||++|||+.|+++||||......
T Consensus       254 -----------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~~  296 (326)
T 2x7f_A          254 -----------------------------LKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNE  296 (326)
T ss_dssp             -----------------------------CSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCTTH
T ss_pred             -----------------------------CCccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCccc
Confidence                                         0112235688999999999999999999999999999976543

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.97  E-value=1.9e-32  Score=245.93  Aligned_cols=186  Identities=27%  Similarity=0.482  Sum_probs=143.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ |++||||||+||++....                
T Consensus        85 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~~~~----------------  145 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEK--ESLTEDEATQFLKQILDGVHYLHSK-RIAHFDLKPENIMLLDKN----------------  145 (283)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEESCSS----------------
T ss_pred             EEEeecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChHHEEEecCC----------------
Confidence            589999 89999999875  3499999999999999999999995 999999999999994320                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||.+.....  ......+
T Consensus       146 ----------------------------------------------------~~~~~~kl~dfg~~~~~~~~~~~~~~~~  173 (283)
T 3bhy_A          146 ----------------------------------------------------VPNPRIKLIDFGIAHKIEAGNEFKNIFG  173 (283)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCTTCEECC--------CC
T ss_pred             ----------------------------------------------------CCCCceEEEecccceeccCCCcccccCC
Confidence                                                                1123789999999965543  2344568


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+.......+...             
T Consensus       174 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~~-------------  234 (283)
T 3bhy_A          174 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE------TKQETLTNISAVNYDFDEEY-------------  234 (283)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHTTCCCCCHHH-------------
T ss_pred             CcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc------chHHHHHHhHhcccCCcchh-------------
Confidence            89999999999999999999999999999999999999765      23333333321111111000             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                               ....+..+.+||.+||..||++|||+.|+++||||+...
T Consensus       235 -------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          235 -------------------------FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             -------------------------HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             -------------------------cccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence                                     012356789999999999999999999999999998764

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=6.6e-32  Score=249.12  Aligned_cols=179  Identities=31%  Similarity=0.465  Sum_probs=145.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||++.                   
T Consensus       118 lv~e~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~-------------------  175 (335)
T 2owb_A          118 VVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFLN-------------------  175 (335)
T ss_dssp             EEECCCTTCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCEecCCCchhEEEc-------------------
Confidence            589999 78999998876  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       176 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  202 (335)
T 2owb_A          176 -----------------------------------------------------EDLEVKIGDFGLATKVEYDGERKKVLC  202 (335)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEeeccCceecccCcccccccC
Confidence                                                                 24579999999996543   2233457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|||||||++|+|++|..||...      ........+.                      
T Consensus       203 gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~~~----------------------  254 (335)
T 2owb_A          203 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS------CLKETYLRIK----------------------  254 (335)
T ss_dssp             SCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHH----------------------
T ss_pred             CCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC------CHHHHHHHHh----------------------
Confidence            899999999999999999999999999999999999999764      1222222111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                          ......+...+..+.+||++||+.||++|||+.|+++||||+....
T Consensus       255 --------------------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~~  300 (335)
T 2owb_A          255 --------------------KNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYI  300 (335)
T ss_dssp             --------------------HTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCC
T ss_pred             --------------------cCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCCc
Confidence                                1111223344568899999999999999999999999999987643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.97  E-value=2.2e-32  Score=248.48  Aligned_cols=186  Identities=26%  Similarity=0.450  Sum_probs=145.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||++ |++||||||+||++...                 
T Consensus        83 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dikp~NIl~~~~-----------------  142 (304)
T 2jam_A           83 LVMQLVSGGELFDRILER--GVYTEKDASLVIQQVLSAVKYLHEN-GIVHRDLKPENLLYLTP-----------------  142 (304)
T ss_dssp             EEECCCCSCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCSCCGGGCEESSS-----------------
T ss_pred             EEEEcCCCccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CccccCCCHHHEEEecC-----------------
Confidence            589999 88999998775  3489999999999999999999995 99999999999998321                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                          +....++|+|||.+..... ......++
T Consensus       143 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  170 (304)
T 2jam_A          143 ----------------------------------------------------EENSKIMITDFGLSKMEQNGIMSTACGT  170 (304)
T ss_dssp             ----------------------------------------------------STTCCEEBCSCSTTCCCCCBTTHHHHSC
T ss_pred             ----------------------------------------------------CCCCCEEEccCCcceecCCCccccccCC
Confidence                                                                1245799999999865433 22334578


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+..++.++|||||||++|+|++|..||...      ........+.+....++                 
T Consensus       171 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~------~~~~~~~~i~~~~~~~~-----------------  227 (304)
T 2jam_A          171 PGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE------TESKLFEKIKEGYYEFE-----------------  227 (304)
T ss_dssp             CCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHHCCCCCC-----------------
T ss_pred             CCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC------CHHHHHHHHHcCCCCCC-----------------
Confidence            9999999999999999999999999999999999999765      23333333322111100                 


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                           .......+..+.+||.+||..||++|||+.|+++||||.....
T Consensus       228 ---------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  270 (304)
T 2jam_A          228 ---------------------SPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTA  270 (304)
T ss_dssp             ---------------------TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSSCS
T ss_pred             ---------------------ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCCCc
Confidence                                 0012234578999999999999999999999999999987543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.97  E-value=1.4e-31  Score=242.09  Aligned_cols=183  Identities=30%  Similarity=0.456  Sum_probs=143.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ |++|+||||+||+++                   
T Consensus       101 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  158 (298)
T 1phk_A          101 LVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILLD-------------------  158 (298)
T ss_dssp             EEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEeccCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCcceEEEc-------------------
Confidence            589999 78999999876  3499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......+
T Consensus       159 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  185 (298)
T 1phk_A          159 -----------------------------------------------------DDMNIKLTDFGFSCQLDPGEKLREVCG  185 (298)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCTTCCBCCCCS
T ss_pred             -----------------------------------------------------CCCcEEEecccchhhcCCCcccccccC
Confidence                                                                 245799999999865442  3344578


Q ss_pred             CCCCcchHHhh------cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          158 TRQYRAPEVIL------RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       158 ~~~y~aPE~~~------~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ++.|+|||++.      ...++.++|||||||++|+|++|..||...      ........+......++.         
T Consensus       186 ~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~---------  250 (298)
T 1phk_A          186 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR------KQMLMLRMIMSGNYQFGS---------  250 (298)
T ss_dssp             CGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCCT---------
T ss_pred             CccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc------cHHHHHHHHhcCCcccCc---------
Confidence            89999999986      346889999999999999999999999765      233333322211000000         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                   +.....+..+.+||.+||+.||++|||+.|+++||||+....
T Consensus       251 -----------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~  292 (298)
T 1phk_A          251 -----------------------------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYVV  292 (298)
T ss_dssp             -----------------------------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC-
T ss_pred             -----------------------------ccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhccc
Confidence                                         001233568999999999999999999999999999997653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=5.9e-32  Score=244.40  Aligned_cols=180  Identities=30%  Similarity=0.468  Sum_probs=145.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus        92 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  149 (294)
T 2rku_A           92 VVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRN-RVIHRDLKLGNLFLN-------------------  149 (294)
T ss_dssp             EEEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEc-------------------
Confidence            589999 799999988763  499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       150 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  176 (294)
T 2rku_A          150 -----------------------------------------------------EDLEVKIGDFGLATKVEYDGERKKVLC  176 (294)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEEeccCceecccCcccccccc
Confidence                                                                 24579999999986543   2233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|+|||||++|+|++|..||....      .......+.                      
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~----------------------  228 (294)
T 2rku_A          177 GTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC------LKETYLRIK----------------------  228 (294)
T ss_dssp             SCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHH----------------------
T ss_pred             CCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHh----------------------
Confidence            8899999999999889999999999999999999999997652      222111111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                          ......+...+..+.+||++||+.||++|||+.|+++||||+....+
T Consensus       229 --------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~~  275 (294)
T 2rku_A          229 --------------------KNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIP  275 (294)
T ss_dssp             --------------------TTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred             --------------------hccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecCCcC
Confidence                                11112233445688999999999999999999999999999876443

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.97  E-value=8.9e-32  Score=246.59  Aligned_cols=186  Identities=30%  Similarity=0.443  Sum_probs=141.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        91 lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~-----------------  150 (322)
T 2ycf_A           91 IVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLHEN-GIIHRDLKPENVLLSSQ-----------------  150 (322)
T ss_dssp             EEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS-----------------
T ss_pred             EEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHHHEEEecC-----------------
Confidence            589999 88999988765  4599999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                          +....++|+|||.+......  .....|
T Consensus       151 ----------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~g  178 (322)
T 2ycf_A          151 ----------------------------------------------------EEDCLIKITDFGHSKILGETSLMRTLCG  178 (322)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCTTCEECCCCHHHHHHHS
T ss_pred             ----------------------------------------------------CCCCeEEEccCccceecccccccccccC
Confidence                                                                12346999999999665432  223467


Q ss_pred             CCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 TRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ++.|+|||++.   ...++.++|||||||++|+|++|..||.....     .......+.......++            
T Consensus       179 t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~~~~~~~~~------------  241 (322)
T 2ycf_A          179 TPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT-----QVSLKDQITSGKYNFIP------------  241 (322)
T ss_dssp             CCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC-----SSCHHHHHHHTCCCCCH------------
T ss_pred             CcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch-----HHHHHHHHHhCccccCc------------
Confidence            89999999985   35689999999999999999999999976521     11111111110000000            


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                         ..       ....+..+.+||.+||..||++|||+.|+++||||....
T Consensus       242 -------------------~~-------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~~  282 (322)
T 2ycf_A          242 -------------------EV-------WAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  282 (322)
T ss_dssp             -------------------HH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCHH
T ss_pred             -------------------hh-------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCHH
Confidence                               00       012356889999999999999999999999999998754

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=7.1e-32  Score=244.79  Aligned_cols=182  Identities=23%  Similarity=0.412  Sum_probs=144.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+.++|.+++.......++...+..++.||+.||.|||++ |++||||||+||++.                    
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~-~i~H~dlkp~NIl~~--------------------  143 (305)
T 2wtk_C           85 MVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ-GIVHKDIKPGNLLLT--------------------  143 (305)
T ss_dssp             EEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC--------------------
T ss_pred             EEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCcccEEEc--------------------
Confidence            58999966688888876656799999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----ccccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~~  155 (329)
                                                                          ....++|+|||.+.....     .....
T Consensus       144 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  171 (305)
T 2wtk_C          144 ----------------------------------------------------TGGTLKISALGVAEALHPFAADDTCRTS  171 (305)
T ss_dssp             ----------------------------------------------------TTCCEEECCCTTCEECCTTCSSCEECCC
T ss_pred             ----------------------------------------------------CCCcEEeeccccccccCccccccccccC
Confidence                                                                245799999999865431     22345


Q ss_pred             CCCCCCcchHHhhcCC--CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~--~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .+++.|+|||++.+..  ++.++|||||||++|+|++|..||...      +.......+.                   
T Consensus       172 ~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~i~-------------------  226 (305)
T 2wtk_C          172 QGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD------NIYKLFENIG-------------------  226 (305)
T ss_dssp             CSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHH-------------------
T ss_pred             CCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHh-------------------
Confidence            6889999999998754  478999999999999999999999764      2222222111                   


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                             ......+...+..+.+||.+||..||++|||+.|+++||||+.....
T Consensus       227 -----------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          227 -----------------------KGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             -----------------------HCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC
T ss_pred             -----------------------cCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCC
Confidence                                   11122334456788999999999999999999999999999876543

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.97  E-value=4.9e-32  Score=248.46  Aligned_cols=176  Identities=24%  Similarity=0.398  Sum_probs=142.2

Q ss_pred             Cccccc-c-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||++ + ++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||+++.                 
T Consensus       125 lv~e~~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~-----------------  184 (320)
T 3a99_A          125 LILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVLHRDIKDENILIDL-----------------  184 (320)
T ss_dssp             EEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEET-----------------
T ss_pred             EEEEcCCCCccHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcEeCCCCHHHEEEeC-----------------
Confidence            578998 3 8999999875  4589999999999999999999995 9999999999999942                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~  157 (329)
                                                                            ....++|+|||.+..... ......|
T Consensus       185 ------------------------------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~g  210 (320)
T 3a99_A          185 ------------------------------------------------------NRGELKLIDFGSGALLKDTVYTDFDG  210 (320)
T ss_dssp             ------------------------------------------------------TTTEEEECCCTTCEECCSSCBCCCCS
T ss_pred             ------------------------------------------------------CCCCEEEeeCccccccccccccCCCC
Confidence                                                                  135799999999866543 2344578


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+..+ +.++|||||||++|+|++|..||....            .+                       
T Consensus       211 t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------------~~-----------------------  255 (320)
T 3a99_A          211 TRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------------EI-----------------------  255 (320)
T ss_dssp             CGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------------HH-----------------------
T ss_pred             CccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------------hh-----------------------
Confidence            999999999988765 788999999999999999999996420            00                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                         .......+...+..+.+||.+||..||++|||+.|+++||||+....+.
T Consensus       256 -------------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~~~  304 (320)
T 3a99_A          256 -------------------IRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQ  304 (320)
T ss_dssp             -------------------HHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCCHH
T ss_pred             -------------------hcccccccccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCccCcc
Confidence                               0001112223456889999999999999999999999999999876543

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=7.5e-32  Score=244.08  Aligned_cols=190  Identities=33%  Similarity=0.515  Sum_probs=137.0

Q ss_pred             Cccccc-chhHHHHHHhh------cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYS------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSG   73 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~------~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~   73 (329)
                      +||||+ |++|.+++...      ....++...+..++.||+.||.|||++ |++||||||+||++.             
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------  155 (303)
T 2vwi_A           90 LVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN-GQIHRDVKAGNILLG-------------  155 (303)
T ss_dssp             EEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEC-------------
T ss_pred             EEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCCCCCChhhEEEc-------------
Confidence            589999 89999998752      224489999999999999999999995 999999999999993             


Q ss_pred             CCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---
Q 020248           74 LTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---  150 (329)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---  150 (329)
                                                                                 ....++|+|||.+.....   
T Consensus       156 -----------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~  176 (303)
T 2vwi_A          156 -----------------------------------------------------------EDGSVQIADFGVSAFLATGGD  176 (303)
T ss_dssp             -----------------------------------------------------------TTCCEEECCCHHHHHCC----
T ss_pred             -----------------------------------------------------------CCCCEEEEeccchheeccCCC
Confidence                                                                       245799999998854431   


Q ss_pred             -----ccccCCCCCCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          151 -----QFAEEIQTRQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       151 -----~~~~~~~~~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                           ......+++.|+|||++.+ ..++.++|||||||++|+|++|..||....      ....+...  ..+..+. .
T Consensus       177 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~--~~~~~~~-~  247 (303)
T 2vwi_A          177 ITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYP------PMKVLMLT--LQNDPPS-L  247 (303)
T ss_dssp             -----------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSC------GGGHHHHH--HTSSCCC-T
T ss_pred             ccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCc------hhhHHHHH--hccCCCc-c
Confidence                 1233467899999999976 568999999999999999999999997652      22221111  1111000 0


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .                            .. ..........+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       248 ~----------------------------~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          248 E----------------------------TG-VQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             T----------------------------C------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             c----------------------------cc-cccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcCC
Confidence            0                            00 000011223456889999999999999999999999999998754

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=1.1e-31  Score=243.17  Aligned_cols=185  Identities=29%  Similarity=0.500  Sum_probs=141.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||+. |++||||||+||++.                   
T Consensus        93 lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~-------------------  151 (302)
T 2j7t_A           93 IMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSK-RIIHRDLKAGNVLMT-------------------  151 (302)
T ss_dssp             EEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEC-------------------
T ss_pred             EEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHHHEEEC-------------------
Confidence            589999 889999887643 4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||.+....   .......
T Consensus       152 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  178 (302)
T 2j7t_A          152 -----------------------------------------------------LEGDIRLADFGVSAKNLKTLQKRDSFI  178 (302)
T ss_dssp             -----------------------------------------------------TTSCEEECCCHHHHHHHHHHHC-----
T ss_pred             -----------------------------------------------------CCCCEEEEECCCCcccccccccccccc
Confidence                                                                 24579999999874322   1223456


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      +++.|+|||++.     +..++.++|||||||++|+|++|..||...      +....+..+..  +..+.         
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~~~~---------  241 (302)
T 2j7t_A          179 GTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL------NPMRVLLKIAK--SDPPT---------  241 (302)
T ss_dssp             CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SCCCC---------
T ss_pred             CChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC------CHHHHHHHHhc--cCCcc---------
Confidence            889999999984     567899999999999999999999999765      22222222211  11000         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                                  ...+...+..+.+||.+||..||++|||+.|+++||||....+..
T Consensus       242 ----------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~~~  286 (302)
T 2j7t_A          242 ----------------------------LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSNK  286 (302)
T ss_dssp             ----------------------------CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTCCCCH
T ss_pred             ----------------------------cCCccccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhhccch
Confidence                                        001223356789999999999999999999999999999877654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=2.1e-31  Score=240.35  Aligned_cols=184  Identities=28%  Similarity=0.415  Sum_probs=140.9

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ |++|.+++..... ..++...+..++.||+.||.|||++ |++|+||||+||++...                
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~~~----------------  158 (295)
T 2clq_A           96 IFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN-QIVHRDIKGDNVLINTY----------------  158 (295)
T ss_dssp             EEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT----------------
T ss_pred             EEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC-CEEccCCChhhEEEECC----------------
Confidence            589999 8999999987532 2467888999999999999999995 99999999999999431                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEE  155 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~  155 (329)
                                                                             ...++|+|||.+.....   .....
T Consensus       159 -------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~  183 (295)
T 2clq_A          159 -------------------------------------------------------SGVLKISDFGTSKRLAGINPCTETF  183 (295)
T ss_dssp             -------------------------------------------------------TCCEEECCTTTCEESCC-----CCC
T ss_pred             -------------------------------------------------------CCCEEEeecccccccCCCCCccccc
Confidence                                                                   34789999999865542   22345


Q ss_pred             CCCCCCcchHHhhcCC--CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRAG--YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~--~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .+++.|+|||++.+..  ++.++|||||||++|+|++|..||....      .............               
T Consensus       184 ~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~---------------  242 (295)
T 2clq_A          184 TGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELG------EPQAAMFKVGMFK---------------  242 (295)
T ss_dssp             CCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGS------SHHHHHHHHHHHC---------------
T ss_pred             CCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCC------chhHHHHhhcccc---------------
Confidence            6789999999998754  8999999999999999999999997541      1111100000000               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              .....+...+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       243 ------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          243 ------------------------VHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             ------------------------CCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             ------------------------ccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhcc
Confidence                                    01112344567899999999999999999999999999998654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.97  E-value=5.2e-32  Score=242.05  Aligned_cols=181  Identities=24%  Similarity=0.332  Sum_probs=140.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||++ |++|+||||+||+++                   
T Consensus        82 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  139 (276)
T 2yex_A           82 LFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLD-------------------  139 (276)
T ss_dssp             EEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCChHHEEEc-------------------
Confidence            589999 78999988754  3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                           ....++|+|||.+.....     ....
T Consensus       140 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  166 (276)
T 2yex_A          140 -----------------------------------------------------ERDNLKISDFGLATVFRYNNRERLLNK  166 (276)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             -----------------------------------------------------cCCCEEEeeCCCccccCCCcchhcccC
Confidence                                                                 245799999999864431     2344


Q ss_pred             CCCCCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..+++.|+|||++.+..+ +.++|||||||++|+|++|..||....     ........+......              
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~--------------  227 (276)
T 2yex_A          167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS-----DSCQEYSDWKEKKTY--------------  227 (276)
T ss_dssp             CCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC-----TTSHHHHHHHTTCTT--------------
T ss_pred             CccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc-----hHHHHHHHhhhcccc--------------
Confidence            568899999999988765 789999999999999999999997652     111111111100000              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                .......+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       228 --------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (276)
T 2yex_A          228 --------------------------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (276)
T ss_dssp             --------------------------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             --------------------------cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChh
Confidence                                      000122356789999999999999999999999999998754

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.8e-31  Score=243.27  Aligned_cols=184  Identities=33%  Similarity=0.495  Sum_probs=144.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||+. |++|+||||+||+++                   
T Consensus       101 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  159 (314)
T 3com_A          101 IVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFM-RKIHRDIKAGNILLN-------------------  159 (314)
T ss_dssp             EEEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CCcCCCcCHHHEEEC-------------------
Confidence            589999 789999987532 4699999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~  156 (329)
                                                                           ....++|+|||.+......   .....
T Consensus       160 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  186 (314)
T 3com_A          160 -----------------------------------------------------TEGHAKLADFGVAGQLTDTMAKRNTVI  186 (314)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECBTTBSCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEeecccchhhhhhccccCccC
Confidence                                                                 2457999999998655432   23456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|||||||++|+|++|..||...      .....+..+..  +..+               
T Consensus       187 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~~~---------------  243 (314)
T 3com_A          187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI------HPMRAIFMIPT--NPPP---------------  243 (314)
T ss_dssp             SCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SCCC---------------
T ss_pred             CCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHhc--CCCc---------------
Confidence            788999999999999999999999999999999999999765      22222111110  0000               


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                            ....+...+..+.+||.+||..||++|||+.++++||||......
T Consensus       244 ----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~~~  288 (314)
T 3com_A          244 ----------------------TFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGV  288 (314)
T ss_dssp             ----------------------CCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCCCG
T ss_pred             ----------------------ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCCcc
Confidence                                  000122235688999999999999999999999999999976543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=5.7e-32  Score=242.01  Aligned_cols=177  Identities=30%  Similarity=0.494  Sum_probs=135.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++....  .++...+..++.||+.||.|||++ |++|+||||+||++.                   
T Consensus        88 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  145 (276)
T 2h6d_A           88 MVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRH-MVVHRDLKPENVLLD-------------------  145 (276)
T ss_dssp             EEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHH-CSSCCCCCGGGEEEC-------------------
T ss_pred             EEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChhhEEEC-------------------
Confidence            589999 889999998763  489999999999999999999996 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                           ....++|+|||.+......  .....+
T Consensus       146 -----------------------------------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~  172 (276)
T 2h6d_A          146 -----------------------------------------------------AHMNAKIADFGLSNMMSDGEFLRTSCG  172 (276)
T ss_dssp             -----------------------------------------------------TTSCEEECCCCGGGCCCC---------
T ss_pred             -----------------------------------------------------CCCCEEEeecccccccCCCcceecccC
Confidence                                                                 2457999999998665432  234567


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||++.+..+ +.++|+|||||++|+|++|..||...      ........+.                      
T Consensus       173 ~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~------~~~~~~~~~~----------------------  224 (276)
T 2h6d_A          173 SPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE------HVPTLFKKIR----------------------  224 (276)
T ss_dssp             ----CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH----------------------
T ss_pred             CccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC------cHHHHHHHhh----------------------
Confidence            889999999988765 68999999999999999999999754      1222222111                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                          ......+...+..+.+||.+||+.||++|||+.|+++||||+..
T Consensus       225 --------------------~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          225 --------------------GGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             --------------------HCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             --------------------cCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence                                11111233345688999999999999999999999999999753

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=255.89  Aligned_cols=188  Identities=21%  Similarity=0.354  Sum_probs=136.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||||||+++|.+++.... ..+....+..++.||+.||.|||+. ||+||||||+||++.....                
T Consensus        95 lv~E~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlKp~NIll~~~~~----------------  156 (432)
T 3p23_A           95 IAIELCAATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSL-NIVHRDLKPHNILISMPNA----------------  156 (432)
T ss_dssp             EEEECCSEEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHT-TCCCCCCSTTSEEECCCBT----------------
T ss_pred             EEEECCCCCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHC-cCEeCCCCHHHEEEecCCC----------------
Confidence            589999889999998754 3355567789999999999999995 9999999999999943210                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------cccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFAE  154 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~~  154 (329)
                                                                         ....+++|+|||.+.....      ....
T Consensus       157 ---------------------------------------------------~~~~~~kL~DFG~a~~~~~~~~~~~~~~~  185 (432)
T 3p23_A          157 ---------------------------------------------------HGKIKAMISDFGLCKKLAVGRHSFSRRSG  185 (432)
T ss_dssp             ---------------------------------------------------TTBCCEEECCTTEEECC------------
T ss_pred             ---------------------------------------------------CCceeEEEecccceeeccCCCcceeeccc
Confidence                                                               1234688999999865542      2334


Q ss_pred             CCCCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          155 EIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       155 ~~~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ..||+.|+|||++.   ...++.++|||||||++|+|++ |..||....       ......   ..+....        
T Consensus       186 ~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~-------~~~~~~---~~~~~~~--------  247 (432)
T 3p23_A          186 VPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSL-------QRQANI---LLGACSL--------  247 (432)
T ss_dssp             CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT-------THHHHH---HTTCCCC--------
T ss_pred             cCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhh-------HHHHHH---HhccCCc--------
Confidence            57899999999998   4567889999999999999999 999996431       111111   1111000        


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                 .........+..+.+||.+||+.||++|||+.|+++||||....+
T Consensus       248 ---------------------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~~~  292 (432)
T 3p23_A          248 ---------------------------DCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSLEK  292 (432)
T ss_dssp             ---------------------------TTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCHHH
T ss_pred             ---------------------------cccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccChHH
Confidence                                       000011233567889999999999999999999999999987543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=1.2e-32  Score=261.55  Aligned_cols=175  Identities=17%  Similarity=0.238  Sum_probs=138.8

Q ss_pred             cccccchhHHHHHHhh-----cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            2 VLEFLGDSLLRLIKYS-----RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~-----~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +|++++++|.+++...     ....++...+..++.||+.||+|||++ ||+||||||+|||+.                
T Consensus       183 ~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~iiHrDiKp~NILl~----------------  245 (413)
T 3dzo_A          183 LYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLD----------------  245 (413)
T ss_dssp             EEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC----------------
T ss_pred             EeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcccceEEEe----------------
Confidence            5677788999998632     123478889999999999999999995 999999999999993                


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCC
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEI  156 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~  156 (329)
                                                                              ....++|+|||.+..........+
T Consensus       246 --------------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~  269 (413)
T 3dzo_A          246 --------------------------------------------------------QRGGVFLTGFEHLVRDGASAVSPI  269 (413)
T ss_dssp             --------------------------------------------------------TTCCEEECCGGGCEETTEEECCCC
T ss_pred             --------------------------------------------------------cCCeEEEEeccceeecCCccccCC
Confidence                                                                    345699999999977776666677


Q ss_pred             CCCCCcchHHh----------hcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHh
Q 020248          157 QTRQYRAPEVI----------LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAI  226 (329)
Q Consensus       157 ~~~~y~aPE~~----------~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  226 (329)
                      | +.|+|||++          .+..++.++|||||||++|+|++|+.||........                       
T Consensus       270 g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~-----------------------  325 (413)
T 3dzo_A          270 G-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG-----------------------  325 (413)
T ss_dssp             C-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC-----------------------
T ss_pred             C-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh-----------------------
Confidence            8 999999999          444588899999999999999999999976421000                       


Q ss_pred             cCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          227 GGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                               ...++..    ....+..+.+||.+||+.||++|||+.|+++||||.....
T Consensus       326 -------------------------~~~~~~~----~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~~  372 (413)
T 3dzo_A          326 -------------------------SEWIFRS----CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRT  372 (413)
T ss_dssp             -------------------------SGGGGSS----CCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHHH
T ss_pred             -------------------------HHHHHhh----cccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHHH
Confidence                                     0000000    1123468999999999999999999999999999987643

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=5.2e-32  Score=247.08  Aligned_cols=183  Identities=24%  Similarity=0.375  Sum_probs=139.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus        93 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~dlkp~Nil~~~------------------  151 (311)
T 3ork_A           93 IVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMISA------------------  151 (311)
T ss_dssp             EEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET------------------
T ss_pred             EEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCHHHEEEcC------------------
Confidence            589999 89999999876  3599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||.+.....      ...
T Consensus       152 ------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~  177 (311)
T 3ork_A          152 ------------------------------------------------------TNAVKVMDFGIARAIADSGNSVTQTA  177 (311)
T ss_dssp             ------------------------------------------------------TSCEEECCCSCC--------------
T ss_pred             ------------------------------------------------------CCCEEEeeccCccccccccccccccc
Confidence                                                                  45799999999865432      122


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...|++.|+|||++.+..++.++|||||||++|+|++|..||.+.      ........+.. .+..+...         
T Consensus       178 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~------~~~~~~~~~~~-~~~~~~~~---------  241 (311)
T 3ork_A          178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD------SPVSVAYQHVR-EDPIPPSA---------  241 (311)
T ss_dssp             ----CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHH-CCCCCHHH---------
T ss_pred             ccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHhc-CCCCCccc---------
Confidence            346799999999999999999999999999999999999999765      22222222211 11111100         


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                                  .....+..+.+||.+||..||++||++.++++|+|+.....
T Consensus       242 ----------------------------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~  282 (311)
T 3ork_A          242 ----------------------------RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG  282 (311)
T ss_dssp             ----------------------------HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred             ----------------------------ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence                                        01223568899999999999999999999999999986543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=1.8e-31  Score=242.28  Aligned_cols=179  Identities=32%  Similarity=0.487  Sum_probs=143.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++..   ..++...+..++.||+.||.|||++ |++|+||||+||++.                   
T Consensus        97 lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~Nil~~-------------------  153 (303)
T 3a7i_A           97 IIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLHSE-KKIHRDIKAANVLLS-------------------  153 (303)
T ss_dssp             EEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCChheEEEC-------------------
Confidence            589999 7899999875   3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       154 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  180 (303)
T 3a7i_A          154 -----------------------------------------------------EHGEVKLADFGVAGQLTDTQIKRNTFV  180 (303)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECBTTBCCBCCCC
T ss_pred             -----------------------------------------------------CCCCEEEeecccceecCccccccCccC
Confidence                                                                 245799999999865543   233456


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +++.|+|||++.+..++.++|||||||++|+|++|..||...      ........+..  +.                 
T Consensus       181 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~--~~-----------------  235 (303)
T 3a7i_A          181 GTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL------HPMKVLFLIPK--NN-----------------  235 (303)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SC-----------------
T ss_pred             CCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc------CHHHHHHHhhc--CC-----------------
Confidence            788999999999999999999999999999999999999764      22222221110  00                 


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                                            ....+...+..+.+||.+||+.||++|||+.|+++||||.....
T Consensus       236 ----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~  279 (303)
T 3a7i_A          236 ----------------------PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRNAK  279 (303)
T ss_dssp             ----------------------CCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHHCC
T ss_pred             ----------------------CCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcCCC
Confidence                                  00122334567999999999999999999999999999976543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=4e-31  Score=238.51  Aligned_cols=182  Identities=21%  Similarity=0.282  Sum_probs=138.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++...                  
T Consensus        82 lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~~------------------  141 (296)
T 4hgt_A           82 MVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG------------------  141 (296)
T ss_dssp             EEEECCCCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECCG------------------
T ss_pred             EEEEccCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHeeeecc------------------
Confidence            589999999999998643 4599999999999999999999995 99999999999999321                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                         .....++|+|||.+......         
T Consensus       142 ---------------------------------------------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~  170 (296)
T 4hgt_A          142 ---------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQHIPYR  170 (296)
T ss_dssp             ---------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCCeEEEecCccceeccCcccCccCCCC
Confidence                                                               12357999999999654432         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....+++.|+|||++.+..++.++|||||||++|+|++|..||........   ...+..+....-..|.        
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~--------  239 (296)
T 4hgt_A          171 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK---RQKYERISEKKMSTPI--------  239 (296)
T ss_dssp             CSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS---SSHHHHHHHHHHHSCH--------
T ss_pred             cccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhh---hhhhhhhhcccccchh--------
Confidence             2245788999999999999999999999999999999999999987532111   1111111111000000        


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                            ..       .....+..+.+||.+||+.||++|||+.++++
T Consensus       240 ----------------------~~-------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          240 ----------------------EV-------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             ----------------------HH-------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             ----------------------hh-------hhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence                                  00       01233578999999999999999999999976

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.97  E-value=4.1e-31  Score=240.84  Aligned_cols=173  Identities=25%  Similarity=0.455  Sum_probs=139.8

Q ss_pred             Ccccc-c-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEF-L-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~-~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||+ + |++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||+++.                 
T Consensus       115 ~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~-----------------  174 (312)
T 2iwi_A          115 LVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSR-GVVHRDIKDENILIDL-----------------  174 (312)
T ss_dssp             EEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHH-TEECCCCSGGGEEEET-----------------
T ss_pred             EEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCChhhEEEeC-----------------
Confidence            47888 5 899999998763  499999999999999999999996 9999999999999942                 


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~  157 (329)
                                                                            ....++|+|||.+..... ......+
T Consensus       175 ------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~  200 (312)
T 2iwi_A          175 ------------------------------------------------------RRGCAKLIDFGSGALLHDEPYTDFDG  200 (312)
T ss_dssp             ------------------------------------------------------TTTEEEECCCSSCEECCSSCBCCCCS
T ss_pred             ------------------------------------------------------CCCeEEEEEcchhhhcccCcccccCC
Confidence                                                                  135799999999865543 3345578


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +..|+|||++.+..+ +.++|||||||++|+|++|..||...        .    .                        
T Consensus       201 ~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--------~----~------------------------  244 (312)
T 2iwi_A          201 TRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD--------Q----E------------------------  244 (312)
T ss_dssp             CTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH--------H----H------------------------
T ss_pred             cccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh--------H----H------------------------
Confidence            999999999988766 45899999999999999999999642        0    0                        


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                        +.......+...+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       245 ------------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          245 ------------------ILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             ------------------HHHTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC--
T ss_pred             ------------------HhhhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCch
Confidence                              00111122334467889999999999999999999999999999754

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=1.3e-31  Score=242.07  Aligned_cols=181  Identities=28%  Similarity=0.471  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ |++||||||+||+++                   
T Consensus        92 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dlkp~Nil~~-------------------  150 (303)
T 1zy4_A           92 IQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQ-GIIHRDLKPMNIFID-------------------  150 (303)
T ss_dssp             EEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhC-CeecccCCHHhEEEc-------------------
Confidence            589999 889999998643 3478889999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---------  150 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---------  150 (329)
                                                                           ....++|+|||.+.....         
T Consensus       151 -----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~  177 (303)
T 1zy4_A          151 -----------------------------------------------------ESRNVKIGDFGLAKNVHRSLDILKLDS  177 (303)
T ss_dssp             -----------------------------------------------------TTSCEEECCCCCCSCTTC---------
T ss_pred             -----------------------------------------------------CCCCEEEeeCcchhhcccccchhcccc
Confidence                                                                 245799999999865432         


Q ss_pred             --------ccccCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          151 --------QFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       151 --------~~~~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                              ......+++.|+|||++.+. .++.++|||||||++|+|++   ||....     +.......+......+|
T Consensus       178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-----~~~~~~~~~~~~~~~~~  249 (303)
T 1zy4_A          178 QNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-----ERVNILKKLRSVSIEFP  249 (303)
T ss_dssp             ----------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH-----HHHHHHHHHHSTTCCCC
T ss_pred             ccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch-----hHHHHHHhccccccccC
Confidence                    12344678899999999865 68999999999999999998   443210     11111111111000000


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                            ...+...+..+.+||++||+.||++|||+.|+++||||+...
T Consensus       250 --------------------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          250 --------------------------------------PDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             --------------------------------------TTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             --------------------------------------ccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence                                                  012333456789999999999999999999999999998643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.97  E-value=2.6e-31  Score=242.45  Aligned_cols=184  Identities=24%  Similarity=0.433  Sum_probs=136.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+.|++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||++..                   
T Consensus       105 lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~-------------------  162 (313)
T 3cek_A          105 MVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIHQH-GIVHSDLKPANFLIVD-------------------  162 (313)
T ss_dssp             EEECCCSEEHHHHHHHC--SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEET-------------------
T ss_pred             EEEecCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCcccEEEEC-------------------
Confidence            58997799999999876  3589999999999999999999995 9999999999999921                   


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cccC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAEE  155 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~~  155 (329)
                                                                            ..++|+|||.+......     ....
T Consensus       163 ------------------------------------------------------~~~kL~Dfg~~~~~~~~~~~~~~~~~  188 (313)
T 3cek_A          163 ------------------------------------------------------GMLKLIDFGIANQMQPDTTSVVKDSQ  188 (313)
T ss_dssp             ------------------------------------------------------TEEEECCCSSSCC-------------
T ss_pred             ------------------------------------------------------CeEEEeeccccccccCccccccccCC
Confidence                                                                  36899999998654422     2234


Q ss_pred             CCCCCCcchHHhhc-----------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHH
Q 020248          156 IQTRQYRAPEVILR-----------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKI  224 (329)
Q Consensus       156 ~~~~~y~aPE~~~~-----------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  224 (329)
                      .|++.|+|||++.+           ..++.++|||||||++|+|++|..||....     .....   +.......    
T Consensus       189 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----~~~~~---~~~~~~~~----  256 (313)
T 3cek_A          189 VGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII-----NQISK---LHAIIDPN----  256 (313)
T ss_dssp             -CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC-----SHHHH---HHHHHCTT----
T ss_pred             CCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH-----HHHHH---HHHHHhcc----
Confidence            67999999999876           468899999999999999999999997542     11111   11111110    


Q ss_pred             HhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          225 AIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                                       .....+...+..+.+||.+||+.||++|||+.|+++||||+....+.
T Consensus       257 ---------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~~~  303 (313)
T 3cek_A          257 ---------------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTHPV  303 (313)
T ss_dssp             ---------------------------------SCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC----
T ss_pred             ---------------------------------cccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCCCch
Confidence                                             00012223356889999999999999999999999999998765443


Q ss_pred             h
Q 020248          305 D  305 (329)
Q Consensus       305 ~  305 (329)
                      .
T Consensus       304 ~  304 (313)
T 3cek_A          304 N  304 (313)
T ss_dssp             -
T ss_pred             h
Confidence            3

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.97  E-value=2.4e-31  Score=238.26  Aligned_cols=183  Identities=26%  Similarity=0.407  Sum_probs=142.8

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCC-----ccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELG-----IIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~g-----iiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      +||||+ |++|.+++.....  ..++...+..++.|++.||.|||+. |     ++||||||+||+++            
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~~~~~~ivH~dl~p~NIl~~------------  150 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFLD------------  150 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH-C------CCCCCSGGGEEEC------------
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc-cCCCCeeEEeccchhhEEEc------------
Confidence            589999 8899999987532  3489999999999999999999996 8     99999999999993            


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-  151 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-  151 (329)
                                                                                  ....++|+|||.+...... 
T Consensus       151 ------------------------------------------------------------~~~~~kl~dfg~~~~~~~~~  170 (279)
T 2w5a_A          151 ------------------------------------------------------------GKQNVKLGDFGLARILNHDT  170 (279)
T ss_dssp             ------------------------------------------------------------SSSCEEECCCCHHHHC---C
T ss_pred             ------------------------------------------------------------CCCCEEEecCchheeecccc
Confidence                                                                        2457999999998654432 


Q ss_pred             --cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 --FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 --~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                        .....+++.|+|||++.+..++.++|||||||++|+|++|..||...      +.......+..  |..         
T Consensus       171 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~i~~--~~~---------  233 (279)
T 2w5a_A          171 SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF------SQKELAGKIRE--GKF---------  233 (279)
T ss_dssp             HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH--TCC---------
T ss_pred             ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc------CHHHHHHHHhh--ccc---------
Confidence              12346788999999999999999999999999999999999999765      22222222211  110         


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                                    ...+...+..+.+||.+||+.||++|||+.|+++|+|+.+...+
T Consensus       234 ------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~~  277 (279)
T 2w5a_A          234 ------------------------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHHHH  277 (279)
T ss_dssp             ------------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGSC
T ss_pred             ------------------------------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhccc
Confidence                                          01223346789999999999999999999999999999976543

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=4.4e-31  Score=246.32  Aligned_cols=184  Identities=17%  Similarity=0.206  Sum_probs=139.1

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||||++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||+++..                  
T Consensus       129 lv~e~~g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~-~iiHrDlkp~Nill~~~------------------  188 (364)
T 3op5_A          129 MIMDRFGSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEH-EYVHGDIKASNLLLNYK------------------  188 (364)
T ss_dssp             EEEECEEEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEESS------------------
T ss_pred             EEEeCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEEecCCHHHEEEecC------------------
Confidence            589999999999998743 4599999999999999999999995 99999999999999521                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                          ....++|+|||.+......         
T Consensus       189 ----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~  216 (364)
T 3op5_A          189 ----------------------------------------------------NPDQVYLVDYGLAYRYCPEGVHKAYAAD  216 (364)
T ss_dssp             ----------------------------------------------------CTTCEEECCCTTCEESSGGGCCCCSSCC
T ss_pred             ----------------------------------------------------CCCeEEEEECCcceecccCCcccccccC
Confidence                                                                2457999999999554321         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+..     .+..............          
T Consensus       217 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~-----~~~~~~~~~~~~~~~~----------  281 (364)
T 3op5_A          217 PKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNL-----KDPKYVRDSKIRYREN----------  281 (364)
T ss_dssp             SSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT-----TCHHHHHHHHHHHHHC----------
T ss_pred             cccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccc-----cCHHHHHHHHHHhhhh----------
Confidence             123458999999999999999999999999999999999999998642     1222222221111110          


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                           ...++.... .....+..+.+||..||..||++|||+.+|++
T Consensus       282 ---------------------~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          282 ---------------------IASLMDKCF-PAANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             ---------------------HHHHHHHHS-CTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ---------------------HHHHHHHhc-ccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence                                 111111110 11234678999999999999999999999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=8.2e-31  Score=236.64  Aligned_cols=182  Identities=21%  Similarity=0.291  Sum_probs=138.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++..                  
T Consensus        82 lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dlkp~NIl~~~~------------------  141 (296)
T 3uzp_A           82 MVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG------------------  141 (296)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCG------------------
T ss_pred             EEEEecCCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHeEEecC------------------
Confidence            589999999999998543 4599999999999999999999995 99999999999999421                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                         .....++|+|||.+......         
T Consensus       142 ---------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  170 (296)
T 3uzp_A          142 ---------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQHIPYR  170 (296)
T ss_dssp             ---------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCCeEEEeeCCCcccccccccccccccc
Confidence                                                               12357999999998654432         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....|++.|+|||++.+..++.++|||||||++|+|++|..||......   .....+..+....-..|.        
T Consensus       171 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~--------  239 (296)
T 3uzp_A          171 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA---TKRQKYERISEKKMSTPI--------  239 (296)
T ss_dssp             CSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS---SSSSHHHHHHHHHHHSCH--------
T ss_pred             cccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCch---hhhhhhhhhcccccCCch--------
Confidence             23457899999999999999999999999999999999999999875321   111122222111000000        


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                            ..       .....+..+.+||.+||+.||++|||+.++++
T Consensus       240 ----------------------~~-------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          240 ----------------------EV-------LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             ----------------------HH-------HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             ----------------------HH-------HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence                                  00       11234578999999999999999999999876

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.97  E-value=2.7e-32  Score=252.31  Aligned_cols=204  Identities=22%  Similarity=0.346  Sum_probs=146.9

Q ss_pred             Cccccc-chhHHHH------HHhhcCCCcchHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRL------IKYSRYKGLELNKVREICKYILTGLDYLHR-ELGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~------~~~~~~~~l~~~~~~~i~~qll~al~~lH~-~~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      +||||+ |++|.++      +.......++...+..++.||+.||.|||+ + |++||||||+||+++            
T Consensus       120 lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~-~i~H~dl~p~Nil~~------------  186 (348)
T 2pml_X          120 IIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK-NICHRDVKPSNILMD------------  186 (348)
T ss_dssp             EEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS-CEECCCCCGGGEEEC------------
T ss_pred             EEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC-CEeecCCChHhEEEc------------
Confidence            589999 7799998      555334569999999999999999999998 6 999999999999993            


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-c
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-Q  151 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~  151 (329)
                                                                                  ....++|+|||.+..... .
T Consensus       187 ------------------------------------------------------------~~~~~kl~dfg~~~~~~~~~  206 (348)
T 2pml_X          187 ------------------------------------------------------------KNGRVKLSDFGESEYMVDKK  206 (348)
T ss_dssp             ------------------------------------------------------------TTSCEEECCCTTCEECBTTE
T ss_pred             ------------------------------------------------------------CCCcEEEecccccccccccc
Confidence                                                                        245799999999965432 3


Q ss_pred             cccCCCCCCCcchHHhhcC-CCCc-cchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 FAEEIQTRQYRAPEVILRA-GYSF-SVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~-~~s~-~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                      .....++..|+|||++.+. .++. ++|||||||++|+|++|..||....     ........+.......|...     
T Consensus       207 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~~~i~~~~~~~~~~~-----  276 (348)
T 2pml_X          207 IKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI-----SLVELFNNIRTKNIEYPLDR-----  276 (348)
T ss_dssp             ECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS-----CSHHHHHHHTSCCCCCCCSS-----
T ss_pred             ccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC-----cHHHHHHHHhccCcCCccch-----
Confidence            4456788999999999887 6665 9999999999999999999998652     11233332221111111000     


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                        ..+......            .    .........+..+.+||.+||+.||++|||+.|+++||||+...+...
T Consensus       277 --~~~~~~~~~------------~----~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~~~  334 (348)
T 2pml_X          277 --NHFLYPLTN------------K----KSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNIEDL  334 (348)
T ss_dssp             --SSSTTTTCC------------------------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHHHH
T ss_pred             --hhhhccccc------------c----ccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCCHHHH
Confidence              000000000            0    000012334678999999999999999999999999999998765443

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=7e-31  Score=240.46  Aligned_cols=185  Identities=22%  Similarity=0.343  Sum_probs=131.0

Q ss_pred             Cccccc-chhHHHHHHhhcCC----CcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYK----GLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~----~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      +||||+ |++|.+++......    .++...+..++.||+.||.|||++ ||+||||||+||+++               
T Consensus       108 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~ivH~Dikp~NIli~---------------  171 (323)
T 3qup_A          108 VILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR-NFIHRDLAARNCMLA---------------  171 (323)
T ss_dssp             EEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC---------------
T ss_pred             EEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC-CcccCCCCcceEEEc---------------
Confidence            479999 88999999765421    489999999999999999999995 999999999999993               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  151 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----  151 (329)
                                                                               ....++|+|||.+......    
T Consensus       172 ---------------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~  194 (323)
T 3qup_A          172 ---------------------------------------------------------EDMTVCVADFGLSRKIYSGDYYR  194 (323)
T ss_dssp             ---------------------------------------------------------TTSCEEECCCCC-----------
T ss_pred             ---------------------------------------------------------CCCCEEEeecccccccccccccc
Confidence                                                                     2457999999999654321    


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                       .....+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..   .          
T Consensus       195 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~---~----------  255 (323)
T 3qup_A          195 QGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE------NAEIYNYLIG---G----------  255 (323)
T ss_dssp             ------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT---T----------
T ss_pred             ccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC------hHHHHHHHhc---C----------
Confidence             122345678999999999999999999999999999999 999997652      2222222211   0          


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-------HHHHhcCCCcCCCCC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-------AQQCLQHPWLSLRNS  302 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-------a~ell~hpwf~~~~~  302 (329)
                                                  .....+...+..+.+||.+||+.||++|||       ..++++|||+.....
T Consensus       256 ----------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~~  307 (323)
T 3qup_A          256 ----------------------------NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLSTSQ  307 (323)
T ss_dssp             ----------------------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--------
T ss_pred             ----------------------------CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCCCC
Confidence                                        001123344678999999999999999999       666788999998654


Q ss_pred             Chh
Q 020248          303 TRD  305 (329)
Q Consensus       303 ~~~  305 (329)
                      ..-
T Consensus       308 ~pl  310 (323)
T 3qup_A          308 DPL  310 (323)
T ss_dssp             ---
T ss_pred             CCC
Confidence            433

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=3.1e-31  Score=238.93  Aligned_cols=185  Identities=33%  Similarity=0.529  Sum_probs=142.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |++|.+++....  .++...+..++.||+.||.|||++ |++||||||+||++...                 
T Consensus        98 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIlv~~~-----------------  157 (287)
T 2wei_A           98 IVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKH-NIVHRDLKPENILLESK-----------------  157 (287)
T ss_dssp             EEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS-----------------
T ss_pred             EEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCChhhEEEecC-----------------
Confidence            589999 899999887653  499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~~~  157 (329)
                                                                          +....++|+|||.+......  .....+
T Consensus       158 ----------------------------------------------------~~~~~~kL~Dfg~~~~~~~~~~~~~~~~  185 (287)
T 2wei_A          158 ----------------------------------------------------EKDCDIKIIDFGLSTCFQQNTKMKDRIG  185 (287)
T ss_dssp             ----------------------------------------------------STTCCEEECSTTGGGTBCCCSSCSCHHH
T ss_pred             ----------------------------------------------------CCcccEEEeccCcceeecCCCccccccC
Confidence                                                                11346899999998654432  223346


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+. ++.++|||||||++|+|++|..||...      +....+..+..  +..+.        .      
T Consensus       186 ~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~------~~~~~~~~~~~--~~~~~--------~------  242 (287)
T 2wei_A          186 TAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGK------NEYDILKRVET--GKYAF--------D------  242 (287)
T ss_dssp             HHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH--CCCCC--------C------
T ss_pred             cccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCC------CHHHHHHHHHc--CCCCC--------C------
Confidence            7889999998764 899999999999999999999999765      23333333221  11000        0      


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                         .                   +.....+..+.+||++||..||++|||+.|+++||||....+
T Consensus       243 ---~-------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~~~  285 (287)
T 2wei_A          243 ---L-------------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSS  285 (287)
T ss_dssp             ---S-------------------GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHHCC
T ss_pred             ---c-------------------hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcccc
Confidence               0                   000123567899999999999999999999999999987554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=1.8e-30  Score=234.65  Aligned_cols=184  Identities=17%  Similarity=0.207  Sum_probs=139.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++.....                
T Consensus        83 lv~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~~~~----------------  144 (298)
T 1csn_A           83 LVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNS----------------  144 (298)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSS----------------
T ss_pred             EEEEecCCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCHHHEEeccCCC----------------
Confidence            589999999999998753 4599999999999999999999995 9999999999999943210                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                         .....++|+|||.+......         
T Consensus       145 ---------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  173 (298)
T 1csn_A          145 ---------------------------------------------------KNANMIYVVDFGMVKFYRDPVTKQHIPYR  173 (298)
T ss_dssp             ---------------------------------------------------TTTTCEEECCCTTCEESBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCCeEEEEECcccccccccccccccccc
Confidence                                                               11235999999999655432         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....||+.|+|||++.+..++.++|||||||++|+|++|..||......   .....+..+.......+.        
T Consensus       174 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~--------  242 (298)
T 1csn_A          174 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA---TNKQKYERIGEKKQSTPL--------  242 (298)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC---CHHHHHHHHHHHHHHSCH--------
T ss_pred             CccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcc---ccHHHHHHHHhhccCccH--------
Confidence             23456899999999999999999999999999999999999999875211   122222222221111110        


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                            ..       .....+..+.+||.+||..||++|||+.++++
T Consensus       243 ----------------------~~-------~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          243 ----------------------RE-------LCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             ----------------------HH-------HTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ----------------------HH-------HHhhCcHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence                                  00       01234678999999999999999999999875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.97  E-value=5.4e-31  Score=251.64  Aligned_cols=197  Identities=24%  Similarity=0.402  Sum_probs=133.9

Q ss_pred             CcccccchhHHHHHHhhcCCC-----cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKG-----LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~-----l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      ||||||+++|.+++.......     .+...+..++.||+.||+|||+. ||+||||||+||++.......         
T Consensus        86 lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDLkp~NILl~~~~~~~---------  155 (434)
T 2rio_A           86 IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL-KIIHRDLKPQNILVSTSSRFT---------  155 (434)
T ss_dssp             EEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEECCHHHH---------
T ss_pred             EEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC-CccccCCChHhEEEecCcccc---------
Confidence            589999779999998753211     13335678999999999999995 999999999999995420000         


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  151 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----  151 (329)
                                                                     .   ..........++|+|||.+......    
T Consensus       156 -----------------------------------------------~---~~~~~~~~~~~kL~DFG~a~~~~~~~~~~  185 (434)
T 2rio_A          156 -----------------------------------------------A---DQQTGAENLRILISDFGLCKKLDSGQSSF  185 (434)
T ss_dssp             -----------------------------------------------S---CCTTCCCSCEEEECCCTTCEECCC-----
T ss_pred             -----------------------------------------------c---ccccCCCceEEEEcccccceecCCCCccc
Confidence                                                           0   0000023457999999999655432    


Q ss_pred             ---cccCCCCCCCcchHHhhc-------CCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCC
Q 020248          152 ---FAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKM  220 (329)
Q Consensus       152 ---~~~~~~~~~y~aPE~~~~-------~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~  220 (329)
                         .....||+.|+|||++.+       ..++.++|||||||++|+|++ |..||....      .. . ..+..  +..
T Consensus       186 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~------~~-~-~~i~~--~~~  255 (434)
T 2rio_A          186 RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY------SR-E-SNIIR--GIF  255 (434)
T ss_dssp             ---------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT------TH-H-HHHHH--TCC
T ss_pred             eeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch------hh-H-HHHhc--CCC
Confidence               223478999999999976       568999999999999999998 999996541      11 1 11111  100


Q ss_pred             cHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          221 PRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .         ..       .           .      ........+.++.+||.+||+.||++|||+.|+++||||...
T Consensus       256 ~---------~~-------~-----------~------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~~  302 (434)
T 2rio_A          256 S---------LD-------E-----------M------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPK  302 (434)
T ss_dssp             C---------CC-------C-----------C------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSCH
T ss_pred             C---------cc-------c-----------c------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCCc
Confidence            0         00       0           0      000123446789999999999999999999999999999753

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.5e-31  Score=243.96  Aligned_cols=184  Identities=16%  Similarity=0.210  Sum_probs=139.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||+|++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||++...                  
T Consensus       135 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dikp~NIl~~~~------------------  195 (352)
T 2jii_A          135 LVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN-EYVHGNVTAENIFVDPE------------------  195 (352)
T ss_dssp             EEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCCGGGEEEETT------------------
T ss_pred             EEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCHHHEEEcCC------------------
Confidence            58999999999999976445699999999999999999999995 99999999999999431                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                          ....++|+|||.+......         
T Consensus       196 ----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  223 (352)
T 2jii_A          196 ----------------------------------------------------DQSQVTLAGYGFAFRYCPSGKHVAYVEG  223 (352)
T ss_dssp             ----------------------------------------------------EEEEEEECCGGGCBCSSGGGCCCCCCTT
T ss_pred             ----------------------------------------------------CCceEEEecCcceeeccCCCcccccccc
Confidence                                                                0127999999999654421         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHH-HhCCCcHHHHhcCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMME-LIGKMPRKIAIGGA  229 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~  229 (329)
                       .....|++.|+|||++.+..++.++|||||||++|+|++|..||....     .....+..... ..+..+. +.    
T Consensus       224 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~-~~----  293 (352)
T 2jii_A          224 SRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL-----PNTEDIMKQKQKFVDKPGP-FV----  293 (352)
T ss_dssp             SSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT-----TCHHHHHHHHHHHHHSCCC-EE----
T ss_pred             ccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC-----cCHHHHHHHHHhccCChhh-hh----
Confidence             133478999999999999999999999999999999999999998652     12222222221 1111110 00    


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                            .                      ........+..+.+||.+||..||++|||+.++++
T Consensus       294 ------~----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          294 ------G----------------------PCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             ------C----------------------TTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ------h----------------------hccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence                  0                      00001123578999999999999999999999976

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=240.96  Aligned_cols=183  Identities=19%  Similarity=0.231  Sum_probs=141.8

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||||++|.+++....  .++...+..++.||+.||.|||++ ||+||||||+||++...                  
T Consensus       129 lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~------------------  187 (345)
T 2v62_A          129 MVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHEN-EYVHGDIKAANLLLGYK------------------  187 (345)
T ss_dssp             EEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEESS------------------
T ss_pred             EEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCcCHHHEEEccC------------------
Confidence            589999999999998764  599999999999999999999995 99999999999999442                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                          ....++|+|||.+.....          
T Consensus       188 ----------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~  215 (345)
T 2v62_A          188 ----------------------------------------------------NPDQVYLADYGLSYRYCPNGNHKQYQEN  215 (345)
T ss_dssp             ----------------------------------------------------STTSEEECCCTTCEESSGGGCCCCCCCC
T ss_pred             ----------------------------------------------------CCCcEEEEeCCCceecccccccccchhc
Confidence                                                                123799999999965432          


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ......|++.|+|||++.+..++.++|||||||++|+|++|..||....    .+..............+|..+....  
T Consensus       216 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--  289 (345)
T 2v62_A          216 PRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL----KDPVAVQTAKTNLLDELPQSVLKWA--  289 (345)
T ss_dssp             GGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT----TCHHHHHHHHHHHHHTTTHHHHHHS--
T ss_pred             cccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc----cccHHHHHHHHhhcccccHHHHhhc--
Confidence            1234578999999999999999999999999999999999999996532    1222233333333334443222100  


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                     .....+..+.+||.+||..||++|||+.++++
T Consensus       290 -------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          290 -------------------------------PSGSSCCEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             -------------------------------CTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -------------------------------cccccHHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                           01134678999999999999999999999876

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.97  E-value=1.2e-30  Score=238.16  Aligned_cols=181  Identities=24%  Similarity=0.319  Sum_probs=134.2

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||| |++|.+++..... ..++...+..++.||+.||+|||++ |  |+||||||+||+++                
T Consensus       111 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~~~ivH~Dikp~NIll~----------------  173 (309)
T 3p86_A          111 IVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVD----------------  173 (309)
T ss_dssp             EEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS-SSCCCCTTCCGGGEEEC----------------
T ss_pred             EEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCEECCCCChhhEEEe----------------
Confidence            589999 8899999986421 2389999999999999999999995 9  99999999999993                


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---cc
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FA  153 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~  153 (329)
                                                                              ....++|+|||.+......   ..
T Consensus       174 --------------------------------------------------------~~~~~kL~Dfg~a~~~~~~~~~~~  197 (309)
T 3p86_A          174 --------------------------------------------------------KKYTVKVCDFGLSRLKASTFLSSK  197 (309)
T ss_dssp             --------------------------------------------------------TTCCEEECCCC-------------
T ss_pred             --------------------------------------------------------CCCcEEECCCCCCccccccccccc
Confidence                                                                    3457999999998644432   33


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...||+.|+|||++.+..++.++|||||||++|+|++|..||...      +.......+... +               
T Consensus       198 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~------~~~~~~~~~~~~-~---------------  255 (309)
T 3p86_A          198 SAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL------NPAQVVAAVGFK-C---------------  255 (309)
T ss_dssp             ----CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS------CHHHHHHHHHHS-C---------------
T ss_pred             cCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhc-C---------------
Confidence            457899999999999999999999999999999999999999765      222222222110 0               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc--CCCcCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSLR  300 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~--hpwf~~~  300 (329)
                                              .....+...+..+.+||.+||+.||++|||++|+++  ++|++..
T Consensus       256 ------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          256 ------------------------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             ------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             ------------------------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence                                    011233445678999999999999999999999988  5666543

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=3.1e-30  Score=237.24  Aligned_cols=183  Identities=20%  Similarity=0.241  Sum_probs=137.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++....                
T Consensus        82 lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~iiHrDlkp~Nill~~~~~----------------  143 (330)
T 2izr_A           82 MVLELLGPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSK-NLIYRDVKPENFLIGRPGN----------------  143 (330)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCGGG----------------
T ss_pred             EEEEeCCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHHHeeeccCCC----------------
Confidence            589999999999998752 4699999999999999999999995 9999999999999943200                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---------  151 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---------  151 (329)
                                                                         .....++|+|||.+......         
T Consensus       144 ---------------------------------------------------~~~~~~kl~DFg~a~~~~~~~~~~~~~~~  172 (330)
T 2izr_A          144 ---------------------------------------------------KTQQVIHIIDFALAKEYIDPETKKHIPYR  172 (330)
T ss_dssp             ---------------------------------------------------TCTTSEEECCCTTCEESBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCceEEEEEcccceeeecCCCCcccccc
Confidence                                                               11224999999999654322         


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                       .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+....   +....+..+.......|..       
T Consensus       173 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~---~~~~~~~~i~~~~~~~~~~-------  242 (330)
T 2izr_A          173 EHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD---TLKERYQKIGDTKRATPIE-------  242 (330)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS---SHHHHHHHHHHHHHHSCHH-------
T ss_pred             ccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc---cHHHHHHHHHhhhccCCHH-------
Confidence             23567899999999999999999999999999999999999999875210   1112222221111111100       


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             .       .....+ .+.+||.+||..||.+||++.++++
T Consensus       243 -----------------------~-------~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          243 -----------------------V-------LCENFP-EMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             -----------------------H-------HTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             -----------------------H-------HhccCh-HHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                                   0       011234 8999999999999999999999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=6.1e-31  Score=245.87  Aligned_cols=182  Identities=21%  Similarity=0.371  Sum_probs=142.2

Q ss_pred             Cccccc-chhHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +||||| |++|.+++.....     ..++...+..++.||+.||.|||++ ||+||||||+||++...            
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~------------  217 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLTCP------------  217 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS------------
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEEecC------------
Confidence            589999 8999999987642     3488999999999999999999995 99999999999999432            


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----  149 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----  149 (329)
                                                                               +....++|+|||.+....     
T Consensus       218 ---------------------------------------------------------~~~~~~kL~DFG~a~~~~~~~~~  240 (367)
T 3l9p_A          218 ---------------------------------------------------------GPGRVAKIGDFGMARDIYRAGYY  240 (367)
T ss_dssp             ---------------------------------------------------------STTCCEEECCCHHHHHHHHHSSC
T ss_pred             ---------------------------------------------------------CCCceEEECCCcccccccccccc
Confidence                                                                     123468999999985432     


Q ss_pred             cccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          150 KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       150 ~~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      .......+|+.|+|||++.+..++.++|||||||++|+|++ |..||...      .....+..+.. .+          
T Consensus       241 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~------~~~~~~~~i~~-~~----------  303 (367)
T 3l9p_A          241 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK------SNQEVLEFVTS-GG----------  303 (367)
T ss_dssp             TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHT-TC----------
T ss_pred             ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc-CC----------
Confidence            12233456889999999999999999999999999999998 99999765      22222222211 00          


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                    ....+...+..+.+||.+||+.||++|||+.|+++|.|+..
T Consensus       304 ------------------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          304 ------------------------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             ------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------------------------------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence                                          01123344668899999999999999999999999877653

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=1.9e-30  Score=242.92  Aligned_cols=174  Identities=22%  Similarity=0.394  Sum_probs=137.4

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++.....              ..++...+..++.||+.||.|||++ ||+||||||+||+++     
T Consensus       164 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-----  237 (370)
T 2psq_A          164 VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIHRDLAARNVLVT-----  237 (370)
T ss_dssp             EEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC-----
T ss_pred             EEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CeeccccchhhEEEC-----
Confidence            589999 8899999987531              3478999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       238 -------------------------------------------------------------------~~~~~kl~DFG~a  250 (370)
T 2psq_A          238 -------------------------------------------------------------------ENNVMKIADFGLA  250 (370)
T ss_dssp             -------------------------------------------------------------------TTCCEEECCCSSC
T ss_pred             -------------------------------------------------------------------CCCCEEEccccCC
Confidence                                                                               3457999999999


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..  + 
T Consensus       251 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~------~~~~~~~~~~--~-  321 (370)
T 2psq_A          251 RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLKE--G-  321 (370)
T ss_dssp             EETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT--T-
T ss_pred             cccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHhc--C-
Confidence            65442     2233455778999999999999999999999999999999 999997652      2222211110  0 


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            .....+..++..+.+||.+||+.||++|||+.|++++
T Consensus       322 --------------------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          322 --------------------------------------HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             --------------------------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------------------CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                  0011234456789999999999999999999999874

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.97  E-value=1.3e-30  Score=242.03  Aligned_cols=154  Identities=23%  Similarity=0.374  Sum_probs=120.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHH
Q 020248           22 LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLK  101 (329)
Q Consensus        22 l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (329)
                      +++..+..++.||+.||.|||++ ||+||||||+||+++.                                        
T Consensus       190 l~~~~~~~~~~ql~~aL~~LH~~-~ivH~Dikp~NIll~~----------------------------------------  228 (359)
T 3vhe_A          190 LTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLSE----------------------------------------  228 (359)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG----------------------------------------
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhEEEcC----------------------------------------
Confidence            88999999999999999999995 9999999999999932                                        


Q ss_pred             HHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCccc
Q 020248          102 RRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSV  176 (329)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~  176 (329)
                                                      ...++|+|||.+.....     ......+|+.|+|||++.+..++.++
T Consensus       229 --------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~  276 (359)
T 3vhe_A          229 --------------------------------KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS  276 (359)
T ss_dssp             --------------------------------GGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHH
T ss_pred             --------------------------------CCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchh
Confidence                                            45799999999965432     22334567889999999999999999


Q ss_pred             hHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHH
Q 020248          177 DMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRL  255 (329)
Q Consensus       177 DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (329)
                      |||||||++|+|++ |..||.+..      ....+........                                     
T Consensus       277 Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~~-------------------------------------  313 (359)
T 3vhe_A          277 DVWSFGVLLWEIFSLGASPYPGVK------IDEEFCRRLKEGT-------------------------------------  313 (359)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSTTCC------CSHHHHHHHHHTC-------------------------------------
T ss_pred             hhhhHHHHHHHHHhcCCCCCCccc------hhHHHHHHHHcCC-------------------------------------
Confidence            99999999999998 999997652      1122211111100                                     


Q ss_pred             HhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          256 LVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       256 ~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                         ....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       314 ---~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          314 ---RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence               011233346789999999999999999999999986

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=2.6e-30  Score=232.59  Aligned_cols=180  Identities=23%  Similarity=0.327  Sum_probs=139.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ |  ++||||||+||++.....             
T Consensus        98 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~-~~~ivH~dikp~Nil~~~~~~-------------  162 (287)
T 4f0f_A           98 MVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDE-------------  162 (287)
T ss_dssp             EEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCSCCSGGGEEESCCCT-------------
T ss_pred             EEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcceEEEeccCC-------------
Confidence            589999 799998887643 4689999999999999999999995 9  999999999999943200             


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ  157 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~  157 (329)
                                                                            .....++|+|||.+...........+
T Consensus       163 ------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~~~g  188 (287)
T 4f0f_A          163 ------------------------------------------------------NAPVCAKVADFGLSQQSVHSVSGLLG  188 (287)
T ss_dssp             ------------------------------------------------------TCSCCEEECCCTTCBCCSSCEECCCC
T ss_pred             ------------------------------------------------------CCceeEEeCCCCccccccccccccCC
Confidence                                                                  11235899999999776666666788


Q ss_pred             CCCCcchHHhh--cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          158 TRQYRAPEVIL--RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       158 ~~~y~aPE~~~--~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ++.|+|||++.  ...++.++|||||||++|+|++|..||....     .............+.                
T Consensus       189 ~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~----------------  247 (287)
T 4f0f_A          189 NFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS-----YGKIKFINMIREEGL----------------  247 (287)
T ss_dssp             CCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCC-----CCHHHHHHHHHHSCC----------------
T ss_pred             CccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccc-----ccHHHHHHHHhccCC----------------
Confidence            99999999984  4567899999999999999999999997652     111111111111111                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       248 -----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          248 -----------------------RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             -----------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                   01123445678999999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.97  E-value=2.3e-30  Score=236.08  Aligned_cols=184  Identities=26%  Similarity=0.391  Sum_probs=133.5

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||+|..+..+..... ..++...+..++.||+.||.|||++.|++|+||||+||+++                    
T Consensus       101 lv~e~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~--------------------  159 (318)
T 2dyl_A          101 IAMELMGTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLD--------------------  159 (318)
T ss_dssp             EEECCCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEEC--------------------
T ss_pred             EEEeccCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEEC--------------------
Confidence            589999888877776532 56899999999999999999999823999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~~  158 (329)
                                                                          ....++|+|||.+.....  ......++
T Consensus       160 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  187 (318)
T 2dyl_A          160 ----------------------------------------------------ERGQIKLCDFGISGRLVDDKAKDRSAGC  187 (318)
T ss_dssp             ----------------------------------------------------TTSCEEECCCTTC--------------C
T ss_pred             ----------------------------------------------------CCCCEEEEECCCchhccCCccccccCCC
Confidence                                                                245799999999855432  23344688


Q ss_pred             CCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          159 RQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       159 ~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      +.|+|||++.     ...++.++|||||||++|+|++|..||....     .....+..+..  +..+.           
T Consensus       188 ~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~--~~~~~-----------  249 (318)
T 2dyl_A          188 AAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK-----TDFEVLTKVLQ--EEPPL-----------  249 (318)
T ss_dssp             CTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC-----SHHHHHHHHHH--SCCCC-----------
T ss_pred             ccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC-----ccHHHHHHHhc--cCCCC-----------
Confidence            9999999994     4568999999999999999999999997642     22222222221  11000           


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                                .+.....+..+.+||.+||..||++|||+.|+++||||+...
T Consensus       250 --------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (318)
T 2dyl_A          250 --------------------------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKRYE  291 (318)
T ss_dssp             --------------------------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHHHH
T ss_pred             --------------------------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHhcc
Confidence                                      000112356889999999999999999999999999998643

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=3.2e-30  Score=230.00  Aligned_cols=173  Identities=21%  Similarity=0.347  Sum_probs=137.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++.                  
T Consensus        82 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~------------------  141 (269)
T 4hcu_A           82 LVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGE------------------  141 (269)
T ss_dssp             EEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECG------------------
T ss_pred             EEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhC-CeecCCcchheEEEcC------------------
Confidence            589999 889999997643 4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                            ...++|+|||.+.....    .....
T Consensus       142 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  167 (269)
T 4hcu_A          142 ------------------------------------------------------NQVIKVSDFGMTRFVLDDQYTSSTGT  167 (269)
T ss_dssp             ------------------------------------------------------GGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             ------------------------------------------------------CCCEEeccccccccccccccccccCc
Confidence                                                                  45799999999965542    22334


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++||||+||++|+|++ |..||...      ........+....                 
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~------~~~~~~~~~~~~~-----------------  224 (269)
T 4hcu_A          168 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR------SNSEVVEDISTGF-----------------  224 (269)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHTTC-----------------
T ss_pred             ccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC------CHHHHHHHHhcCc-----------------
Confidence            45678999999999999999999999999999999 99999765      2222322221100                 


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+|+.+||+.||++|||+.|+++|
T Consensus       225 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          225 ------------------------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------cCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                                    001223345689999999999999999999999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=234.42  Aligned_cols=174  Identities=24%  Similarity=0.282  Sum_probs=136.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||+|||++ ||+||||||+||+++                   
T Consensus        84 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~dlkp~Nil~~-------------------  142 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSM-NIIHRDLNSHNCLVR-------------------  142 (310)
T ss_dssp             EEEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEEC-------------------
T ss_pred             EEEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCcCeEEEC-------------------
Confidence            589999 889999998743 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-------  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-------  152 (329)
                                                                           ....++|+|||.+.......       
T Consensus       143 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  169 (310)
T 3s95_A          143 -----------------------------------------------------ENKNVVVADFGLARLMVDEKTQPEGLR  169 (310)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECC----------
T ss_pred             -----------------------------------------------------CCCCEEEeecccceecccccccccccc
Confidence                                                                 34579999999996543211       


Q ss_pred             ----------ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          153 ----------AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       153 ----------~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                                ....||+.|+|||++.+..++.++|||||||++|+|++|..||...........                
T Consensus       170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~----------------  233 (310)
T 3s95_A          170 SLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG----------------  233 (310)
T ss_dssp             ----------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS----------------
T ss_pred             cccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh----------------
Confidence                      145689999999999999999999999999999999999999876421110000                


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                 ........  ...+...+..+.+||.+||+.||++|||+.|+++
T Consensus       234 ---------------------------~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          234 ---------------------------LNVRGFLD--RYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             ---------------------------BCHHHHHH--HTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------hhhhcccc--ccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                       00011111  1123445668899999999999999999999986

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=4.2e-30  Score=241.37  Aligned_cols=174  Identities=22%  Similarity=0.364  Sum_probs=138.0

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++.....              ..+++..+..++.||+.||.|||++ ||+||||||+||++.     
T Consensus       152 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-----  225 (382)
T 3tt0_A          152 VIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIHRDLAARNVLVT-----  225 (382)
T ss_dssp             EEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-----
T ss_pred             EEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC-CEecCCCCcceEEEc-----
Confidence            589999 8899999987641              3489999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       226 -------------------------------------------------------------------~~~~~kL~DFG~a  238 (382)
T 3tt0_A          226 -------------------------------------------------------------------EDNVMKIADFGLA  238 (382)
T ss_dssp             -------------------------------------------------------------------TTCCEEECSCSCC
T ss_pred             -------------------------------------------------------------------CCCcEEEcccCcc
Confidence                                                                               2457999999999


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......+|+.|+|||++.+..++.++|||||||++|+|++ |..||....      .......+...   
T Consensus       239 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~------~~~~~~~~~~~---  309 (382)
T 3tt0_A          239 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------VEELFKLLKEG---  309 (382)
T ss_dssp             CCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTT---
T ss_pred             cccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcC---
Confidence            65442     2233455778999999999999999999999999999999 999997652      22222211100   


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                            .....+...+..+.+||.+||+.||++|||+.|++++
T Consensus       310 --------------------------------------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          310 --------------------------------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             --------------------------------------CCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------------------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                  0011233446789999999999999999999999874

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.96  E-value=5.6e-30  Score=231.96  Aligned_cols=183  Identities=20%  Similarity=0.309  Sum_probs=138.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        88 lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~Dlkp~Nil~~-------------------  145 (294)
T 4eqm_A           88 LVMEYIEGPTLSEYIESH--GPLSVDTAINFTNQILDGIKHAHDM-RIVHRDIKPQNILID-------------------  145 (294)
T ss_dssp             EEEECCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCCHHHEEEC-------------------
Confidence            589999 88999999876  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       146 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  172 (294)
T 4eqm_A          146 -----------------------------------------------------SNKTLKIFDFGIAKALSETSLTQTNHV  172 (294)
T ss_dssp             -----------------------------------------------------TTSCEEECCCSSSTTC-----------
T ss_pred             -----------------------------------------------------CCCCEEEEeCCCccccccccccccCcc
Confidence                                                                 3457999999999655432    2334


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .||+.|+|||++.+..++.++|||||||++|+|++|..||.+..      ......  ....+..|...           
T Consensus       173 ~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~------~~~~~~--~~~~~~~~~~~-----------  233 (294)
T 4eqm_A          173 LGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET------AVSIAI--KHIQDSVPNVT-----------  233 (294)
T ss_dssp             --CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC------HHHHHH--HHHSSCCCCHH-----------
T ss_pred             ccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHH--HHhhccCCCcc-----------
Confidence            68999999999999999999999999999999999999997652      111111  11111111000           


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              .......+..+.++|.+||..||++||+..+.+.+.|..-..
T Consensus       234 ------------------------~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~  275 (294)
T 4eqm_A          234 ------------------------TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH  275 (294)
T ss_dssp             ------------------------HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred             ------------------------hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence                                    001233467899999999999999999777777777766544

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=4e-30  Score=246.73  Aligned_cols=173  Identities=21%  Similarity=0.311  Sum_probs=137.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......++...+..++.||+.||+|||++ |++||||||+||+++                   
T Consensus       264 iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill~-------------------  323 (450)
T 1k9a_A          264 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVS-------------------  323 (450)
T ss_dssp             EEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC-------------------
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEEC-------------------
Confidence            589999 88999999986544579999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||++...........++.
T Consensus       324 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  350 (450)
T 1k9a_A          324 -----------------------------------------------------EDNVAKVSDFGLTKEASSTQDTGKLPV  350 (450)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECC------CCCT
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCcccccccccCCCCCc
Confidence                                                                 345799999999976554444446788


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||++.+..++.++|||||||++|+|++ |..||....      ..+....+..  |                    
T Consensus       351 ~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~------~~~~~~~i~~--~--------------------  402 (450)
T 1k9a_A          351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK--G--------------------  402 (450)
T ss_dssp             TTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC------TTTHHHHHHT--T--------------------
T ss_pred             ceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--C--------------------
Confidence            9999999999999999999999999999998 999998652      1222221110  0                    


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                         .....+..++..+.+||.+||+.||++|||+.++++
T Consensus       403 -------------------~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          403 -------------------YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             -------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                               011234456788999999999999999999999875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.96  E-value=3.3e-30  Score=249.15  Aligned_cols=197  Identities=18%  Similarity=0.254  Sum_probs=148.3

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||+|++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+|||++..                  
T Consensus        80 lvme~~g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~-gIvHrDIKP~NILl~~~------------------  139 (483)
T 3sv0_A           80 LVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSK-SFLHRDIKPDNFLMGLG------------------  139 (483)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECCG------------------
T ss_pred             EEEECCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHC-CEeecccCcceEEEecC------------------
Confidence            589999999999998643 4599999999999999999999995 99999999999999421                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc--------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF--------  152 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~--------  152 (329)
                                                                         .....++|+|||++.......        
T Consensus       140 ---------------------------------------------------~~~~~vkL~DFGla~~~~~~~~~~~~~~~  168 (483)
T 3sv0_A          140 ---------------------------------------------------RRANQVYIIDFGLAKKYRDTSTHQHIPYR  168 (483)
T ss_dssp             ---------------------------------------------------GGTTCEEECCCTTCEECBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCCeEEEEeCCcceeccCCccccccccc
Confidence                                                               124579999999996554321        


Q ss_pred             --ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          153 --AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       153 --~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                        ....||+.|+|||++.+..++.++|||||||++|+|++|..||.+....   .....+..+....-..          
T Consensus       169 ~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~---~~~~~~~~i~~~~~~~----------  235 (483)
T 3sv0_A          169 ENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAG---TKKQKYEKISEKKVAT----------  235 (483)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS---SHHHHHHHHHHHHHHS----------
T ss_pred             cccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccch---hHHHHHHHHhhccccc----------
Confidence              2457899999999999999999999999999999999999999875311   1122222221110000          


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc----------CCCcCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ----------HPWLSLR  300 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~----------hpwf~~~  300 (329)
                                          ....+       ....+.++.+||.+||..||++||++.+|++          ++|+...
T Consensus       236 --------------------~~~~l-------~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~  288 (483)
T 3sv0_A          236 --------------------SIEAL-------CRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVF  288 (483)
T ss_dssp             --------------------CHHHH-------HTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             --------------------cHHHH-------hcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCc
Confidence                                00111       1233578999999999999999999998764          7888777


Q ss_pred             CCChhhhh
Q 020248          301 NSTRDETK  308 (329)
Q Consensus       301 ~~~~~~~~  308 (329)
                      +|.....+
T Consensus       289 dW~~~~~~  296 (483)
T 3sv0_A          289 DWTILKYQ  296 (483)
T ss_dssp             HHHHHTC-
T ss_pred             Cchhhccc
Confidence            76654433

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.96  E-value=2.2e-30  Score=237.89  Aligned_cols=173  Identities=24%  Similarity=0.328  Sum_probs=134.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++.                   
T Consensus        91 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~-------------------  149 (325)
T 3kex_A           91 LVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEH-GMVHRNLAARNVLLK-------------------  149 (325)
T ss_dssp             EEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHT-TCCCSCCSSTTEEES-------------------
T ss_pred             EEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhC-CCCCCccchheEEEC-------------------
Confidence            589999 899999987642 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                           ....++|+|||.+......     ...
T Consensus       150 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  176 (325)
T 3kex_A          150 -----------------------------------------------------SPSQVQVADFGVADLLPPDDKQLLYSE  176 (325)
T ss_dssp             -----------------------------------------------------SSSCEEECSCSGGGGSCCCTTCCC---
T ss_pred             -----------------------------------------------------CCCeEEECCCCcccccCcccccccccC
Confidence                                                                 3457999999999665322     233


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+.. .                
T Consensus       177 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~-~----------------  233 (325)
T 3kex_A          177 AKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR------LAEVPDLLEK-G----------------  233 (325)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC------TTHHHHHHHT-T----------------
T ss_pred             CCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC------HHHHHHHHHc-C----------------
Confidence            456778999999999999999999999999999999 999997652      1111111110 0                


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              .....+...+..+.+||.+||..||++|||+.|+++|
T Consensus       234 ------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          234 ------------------------ERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             ------------------------CBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             ------------------------CCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                    0011223345578899999999999999999999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=2.6e-30  Score=232.23  Aligned_cols=173  Identities=18%  Similarity=0.314  Sum_probs=128.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++.                  
T Consensus        92 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~------------------  151 (281)
T 1mp8_A           92 IIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS------------------  151 (281)
T ss_dssp             EEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeecccccHHHEEECC------------------
Confidence            589999 789999998653 3589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       152 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  177 (281)
T 1mp8_A          152 ------------------------------------------------------NDCVKLGDFGLSRYMEDSTYYKASKG  177 (281)
T ss_dssp             ------------------------------------------------------TTEEEECC------------------
T ss_pred             ------------------------------------------------------CCCEEECccccccccCcccccccccC
Confidence                                                                  347999999998655432    2233


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ....+..+...                  
T Consensus       178 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~------~~~~~~~i~~~------------------  233 (281)
T 1mp8_A          178 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIENG------------------  233 (281)
T ss_dssp             -CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHTT------------------
T ss_pred             CCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC------HHHHHHHHHcC------------------
Confidence            45678999999999999999999999999999996 999997652      22222222110                  


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                             .....+...+..+.+||.+||..||++|||+.|++++
T Consensus       234 -----------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          234 -----------------------ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             -----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                   0011233456789999999999999999999999863

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=5.6e-30  Score=229.98  Aligned_cols=173  Identities=19%  Similarity=0.357  Sum_probs=137.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        96 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nili~-------------------  154 (283)
T 3gen_A           96 IITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLVN-------------------  154 (283)
T ss_dssp             EEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEEC-------------------
T ss_pred             EEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHC-CccCCCCccceEEEc-------------------
Confidence            589999 899999998743 3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       155 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  181 (283)
T 3gen_A          155 -----------------------------------------------------DQGVVKVSDFGLSRYVLDDEYTSSVGS  181 (283)
T ss_dssp             -----------------------------------------------------TTSCEEECSTTGGGGBCCHHHHSTTST
T ss_pred             -----------------------------------------------------CCCCEEEccccccccccccccccccCC
Confidence                                                                 245799999999965543    22233


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||...      +.......+.....                
T Consensus       182 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~------~~~~~~~~~~~~~~----------------  239 (283)
T 3gen_A          182 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF------TNSETAEHIAQGLR----------------  239 (283)
T ss_dssp             TSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHHHHHTTCC----------------
T ss_pred             ccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcccc------ChhHHHHHHhcccC----------------
Confidence            45678999999999999999999999999999998 99999765      22222222221100                


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                               ...+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       240 -------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          240 -------------------------LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             -------------------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                                     01122335688999999999999999999999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.96  E-value=2.7e-30  Score=236.33  Aligned_cols=186  Identities=20%  Similarity=0.359  Sum_probs=143.5

Q ss_pred             Cccccc-chhHHHHHHhhcC--------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ |++|.+++.....        ..++...+..++.||+.||.|||++ ||+||||||+||++.           
T Consensus       105 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~NIli~-----------  172 (322)
T 1p4o_A          105 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMVA-----------  172 (322)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEEEC-----------
T ss_pred             EEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CCccCCCccceEEEc-----------
Confidence            589999 8899999986431        3468899999999999999999995 999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  151 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~  151 (329)
                                                                                   ....++|+|||.+......
T Consensus       173 -------------------------------------------------------------~~~~~kl~Dfg~~~~~~~~  191 (322)
T 1p4o_A          173 -------------------------------------------------------------EDFTVKIGDFGMTRDIYET  191 (322)
T ss_dssp             -------------------------------------------------------------TTCCEEECCTTCCCGGGGG
T ss_pred             -------------------------------------------------------------CCCeEEECcCccccccccc
Confidence                                                                         2457999999998654321


Q ss_pred             -----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          152 -----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       152 -----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                           .....+++.|+|||++.+..++.++|||||||++|+|++ |..||...      ........+..  +..     
T Consensus       192 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~------~~~~~~~~~~~--~~~-----  258 (322)
T 1p4o_A          192 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL------SNEQVLRFVME--GGL-----  258 (322)
T ss_dssp             GCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS------CHHHHHHHHHT--TCC-----
T ss_pred             cccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC------CHHHHHHHHHc--CCc-----
Confidence                 223345778999999999999999999999999999999 89999765      22222222211  000     


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC------CCcCC
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH------PWLSL  299 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h------pwf~~  299 (329)
                                                        ...+...+..+.+||.+||..||++|||+.|+++|      +||+.
T Consensus       259 ----------------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~  304 (322)
T 1p4o_A          259 ----------------------------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  304 (322)
T ss_dssp             ----------------------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             ----------------------------------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCcc
Confidence                                              01223346789999999999999999999999986      78776


Q ss_pred             CCCChhh
Q 020248          300 RNSTRDE  306 (329)
Q Consensus       300 ~~~~~~~  306 (329)
                      ......+
T Consensus       305 ~~~~~~~  311 (322)
T 1p4o_A          305 VSFYYSE  311 (322)
T ss_dssp             HCSTTST
T ss_pred             ccccccc
Confidence            6555443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=3.4e-30  Score=255.78  Aligned_cols=206  Identities=29%  Similarity=0.395  Sum_probs=145.7

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||| |++|.+++..... ..++...+..++.||+.||.|||+. ||+||||||+||+++..                
T Consensus        95 LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~-gIVHrDLKP~NILl~~~----------------  157 (676)
T 3qa8_A           95 LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN-RIIHRDLKPENIVLQPG----------------  157 (676)
T ss_dssp             CEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT-TBCCCCCCSTTEEEECC----------------
T ss_pred             EEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC-CCccCCCCHHHeEeecC----------------
Confidence            689999 9999999987532 3589999999999999999999995 99999999999999542                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~  156 (329)
                                                                           +....++|+|||.+.....  ......
T Consensus       158 -----------------------------------------------------g~~~~vKL~DFG~a~~~~~~~~~~~~~  184 (676)
T 3qa8_A          158 -----------------------------------------------------PQRLIHKIIDLGYAKELDQGELCTEFV  184 (676)
T ss_dssp             -----------------------------------------------------SSSCEEEECSCCCCCBTTSCCCCCCCC
T ss_pred             -----------------------------------------------------CCceeEEEccccccccccccccccccc
Confidence                                                                 2234689999999966543  234457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |++.|+|||++.+..++.++|||||||++|+|++|..||.+..      ...      ...+.+...-....   ..+-.
T Consensus       185 gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~------~~~------~~~~~i~~~~~~~~---~~~~~  249 (676)
T 3qa8_A          185 GTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW------QPV------QWHGKVREKSNEHI---VVYDD  249 (676)
T ss_dssp             SCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC------HHH------HSSTTCC------C---CSCCC
T ss_pred             CCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc------chh------hhhhhhhcccchhh---hhhhh
Confidence            8999999999999999999999999999999999999997641      100      00000000000000   00000


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ..+..         .+..........+...+..+.+||++||.+||++|||++|+++||||...
T Consensus       250 l~g~~---------~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l  304 (676)
T 3qa8_A          250 LTGAV---------KFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQAL  304 (676)
T ss_dssp             CSSSC---------CCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHH
T ss_pred             hcccc---------ccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHH
Confidence            00000         00111111223455678899999999999999999999999999999875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=1.4e-30  Score=245.81  Aligned_cols=204  Identities=25%  Similarity=0.374  Sum_probs=147.9

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||| |++|.+++..... ..++...+..++.||+.||+|||++ ||+||||||+||++....               
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~---------------  149 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN-GIVHRNIKPGNIMRVIGE---------------  149 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEEECT---------------
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC-CEEECCcCHHHEEEeecC---------------
Confidence            589999 8999999987543 2389999999999999999999995 999999999999983321               


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~  156 (329)
                                                                           +....++|+|||.+.....  ......
T Consensus       150 -----------------------------------------------------~~~~~~kL~DFG~a~~~~~~~~~~~~~  176 (396)
T 4eut_A          150 -----------------------------------------------------DGQSVYKLTDFGAARELEDDEQFVSLY  176 (396)
T ss_dssp             -----------------------------------------------------TSCEEEEECCGGGCEECCCGGGSSCSS
T ss_pred             -----------------------------------------------------CCceeEEEecCCCceEccCCCcccccc
Confidence                                                                 1234689999999965543  334567


Q ss_pred             CCCCCcchHHhhc--------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          157 QTRQYRAPEVILR--------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       157 ~~~~y~aPE~~~~--------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                      |++.|+|||++.+        ..++.++|||||||++|+|++|..||.....     .......+..+++..|...+...
T Consensus       177 gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~  251 (396)
T 4eut_A          177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG-----PRRNKEVMYKIITGKPSGAISGV  251 (396)
T ss_dssp             SCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTC-----TTTCHHHHHHHHHSCCTTCCEEE
T ss_pred             CCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-----ccchHHHHHHHhcCCCcccchhh
Confidence            8999999999875        4578899999999999999999999976531     12223344444444444333222


Q ss_pred             CCC-ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          229 AQS-KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      ... ...++...               .+.....++...+..+.+||++||++||++|+|+.|+++
T Consensus       252 ~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          252 QKAENGPIDWSG---------------DMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             ECSTTCCEEEES---------------SCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             eeccCCCcccCc---------------cCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHH
Confidence            111 11111000               001112345677889999999999999999999999854

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=1.1e-30  Score=236.26  Aligned_cols=181  Identities=24%  Similarity=0.353  Sum_probs=132.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH--------hhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH--------RELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH--------~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ |++|.+++..   ..++...+..++.||+.||.|||        ++ ||+||||||+||+++           
T Consensus        83 lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~-~ivH~Dlkp~Nill~-----------  147 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP-AIAHRDLKSKNILVK-----------  147 (301)
T ss_dssp             EEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC-EEECSCCCGGGEEEC-----------
T ss_pred             EehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CeecCCCChHhEEEc-----------
Confidence            589999 8899999965   35999999999999999999999        84 999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  151 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~  151 (329)
                                                                                   ....++|+|||.+......
T Consensus       148 -------------------------------------------------------------~~~~~kl~Dfg~a~~~~~~  166 (301)
T 3q4u_A          148 -------------------------------------------------------------KNGQCCIADLGLAVMHSQS  166 (301)
T ss_dssp             -------------------------------------------------------------TTSCEEECCCTTCEEEETT
T ss_pred             -------------------------------------------------------------CCCCEEEeeCCCeeecccc
Confidence                                                                         3457999999998544321


Q ss_pred             -------cccCCCCCCCcchHHhhcC------CCCccchHHHHHHHHHHHHhC----------CcCCCCCCCCCCCCchH
Q 020248          152 -------FAEEIQTRQYRAPEVILRA------GYSFSVDMWSFACTAFELATG----------DMLFAPKSGQGFCEDED  208 (329)
Q Consensus       152 -------~~~~~~~~~y~aPE~~~~~------~~s~~~DiwslG~il~~l~~g----------~~pf~~~~~~~~~~~~~  208 (329)
                             .....||+.|+|||++.+.      .++.++|||||||++|+|++|          ..||.......  ....
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~--~~~~  244 (301)
T 3q4u_A          167 TNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND--PSFE  244 (301)
T ss_dssp             TTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS--CCHH
T ss_pred             cccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC--cchh
Confidence                   2234789999999999876      455799999999999999999          67775442110  1111


Q ss_pred             HHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH
Q 020248          209 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  288 (329)
Q Consensus       209 ~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta  288 (329)
                      .+..+....+..|.                  .          ...      ..+...+..+.+||.+||+.||++|||+
T Consensus       245 ~~~~~~~~~~~~~~------------------~----------~~~------~~~~~~~~~l~~li~~cl~~dP~~Rps~  290 (301)
T 3q4u_A          245 DMRKVVCVDQQRPN------------------I----------PNR------WFSDPTLTSLAKLMKECWYQNPSARLTA  290 (301)
T ss_dssp             HHHHHHTTSCCCCC------------------C----------CGG------GGGSHHHHHHHHHHHHHCCSSGGGSCCH
T ss_pred             hhhHHHhccCCCCC------------------C----------Chh------hccCccHHHHHHHHHHHhhcChhhCCCH
Confidence            11111111000000                  0          000      0123456789999999999999999999


Q ss_pred             HHHhc
Q 020248          289 QQCLQ  293 (329)
Q Consensus       289 ~ell~  293 (329)
                      .|+++
T Consensus       291 ~~i~~  295 (301)
T 3q4u_A          291 LRIKK  295 (301)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=3.6e-30  Score=229.69  Aligned_cols=180  Identities=28%  Similarity=0.394  Sum_probs=132.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC---ccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG---IIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g---iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      +||||+ |++|.+++..   ..++...+..++.|++.||.|||++ |   ++||||||+||++......           
T Consensus        83 lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~-~~~~i~H~dikp~Nil~~~~~~~-----------  147 (271)
T 3dtc_A           83 LVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYLHDE-AIVPIIHRDLKSSNILILQKVEN-----------  147 (271)
T ss_dssp             EEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHS-SSSCCCCSCCSGGGEEESSCCSS-----------
T ss_pred             EEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHhC-CCCceeecCCchHHEEEeccccc-----------
Confidence            589999 8999999864   3599999999999999999999995 8   8999999999999432100           


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccC
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEE  155 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~  155 (329)
                                                                           .......++|+|||.+..... .....
T Consensus       148 -----------------------------------------------------~~~~~~~~kl~Dfg~~~~~~~~~~~~~  174 (271)
T 3dtc_A          148 -----------------------------------------------------GDLSNKILKITDFGLAREWHRTTKMSA  174 (271)
T ss_dssp             -----------------------------------------------------SCCSSCCEEECCCCC------------
T ss_pred             -----------------------------------------------------ccccCcceEEccCCcccccccccccCC
Confidence                                                                 001245799999999965443 23345


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .+++.|+|||.+.+..++.++|||||||++|+|++|..||.+..      .......+..  +.                
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~--~~----------------  230 (271)
T 3dtc_A          175 AGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID------GLAVAYGVAM--NK----------------  230 (271)
T ss_dssp             -CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC------HHHHHHHHHT--SC----------------
T ss_pred             CCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHhhhc--CC----------------
Confidence            78899999999999999999999999999999999999997652      2211111110  00                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                            .....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       231 ----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          231 ----------------------LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             ----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------------CCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence                                  0011234456789999999999999999999999874

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=1.4e-30  Score=238.94  Aligned_cols=191  Identities=23%  Similarity=0.252  Sum_probs=134.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhC----------CccccCCCCCceeeecCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL----------GIIHTDLKPENILLVSTIDPSKDP   69 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~----------giiH~Dlk~~Nil~~~~~~~~~~~   69 (329)
                      +||||| |++|.+++...   .+++..+..++.|++.||.|||+ .          ||+||||||+||++.         
T Consensus        99 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~-~~~~l~~~~~~~ivH~Dlkp~Nill~---------  165 (322)
T 3soc_A           99 LITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE-DIPGLKDGHKPAISHRDIKSKNVLLK---------  165 (322)
T ss_dssp             EEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTC-CEEEETTEEECEEECSCCSGGGEEEC---------
T ss_pred             EEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh-hccccccccCCCEEeCCCChHhEEEC---------
Confidence            589999 88999999774   49999999999999999999998 6          999999999999993         


Q ss_pred             CCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc
Q 020248           70 IRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN  149 (329)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~  149 (329)
                                                                                     ....++|+|||.+....
T Consensus       166 ---------------------------------------------------------------~~~~~kL~DFg~a~~~~  182 (322)
T 3soc_A          166 ---------------------------------------------------------------NNLTACIADFGLALKFE  182 (322)
T ss_dssp             ---------------------------------------------------------------TTCCEEECCCTTCEEEC
T ss_pred             ---------------------------------------------------------------CCCeEEEccCCcccccc
Confidence                                                                           24579999999996543


Q ss_pred             c-----ccccCCCCCCCcchHHhhcC-----CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          150 K-----QFAEEIQTRQYRAPEVILRA-----GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       150 ~-----~~~~~~~~~~y~aPE~~~~~-----~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .     ......||+.|+|||++.+.     .++.++|||||||++|+|++|..||.+.........      .....+.
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~------~~~~~~~  256 (322)
T 3soc_A          183 AGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPF------EEEIGQH  256 (322)
T ss_dssp             TTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTT------HHHHCSS
T ss_pred             cccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccch------hhhhccC
Confidence            2     22335789999999999873     456789999999999999999999987532211100      0000111


Q ss_pred             Cc-HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          220 MP-RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       220 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      .. ..+.........               ........     .....+..+.+||.+||+.||++|||+.|+++
T Consensus       257 ~~~~~~~~~~~~~~~---------------~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          257 PSLEDMQEVVVHKKK---------------RPVLRDYW-----QKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             CCHHHHHHHHTTSCC---------------CCCCCGGG-----GSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CchhhhhhhhhcccC---------------CCCccccc-----cccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            00 000000000000               00000000     11234567999999999999999999999986

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.96  E-value=4.3e-30  Score=236.16  Aligned_cols=172  Identities=20%  Similarity=0.347  Sum_probs=135.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..++...+..++.||+.||.|||+. ||+||||||+||+++                   
T Consensus       127 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~-------------------  185 (325)
T 3kul_A          127 IVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDL-GYVHRDLAARNVLVD-------------------  185 (325)
T ss_dssp             EEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEEC-------------------
Confidence            589999 889999997543 4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                           ....++|+|||.+......      ..
T Consensus       186 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  212 (325)
T 3kul_A          186 -----------------------------------------------------SNLVCKVSDFGLSRVLEDDPDAAYTTT  212 (325)
T ss_dssp             -----------------------------------------------------TTCCEEECCCSSCEECC----CCEECC
T ss_pred             -----------------------------------------------------CCCCEEECCCCcccccccCccceeecc
Confidence                                                                 3457999999999655432      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+|+.|+|||++.+..++.++|||||||++|+|++ |..||...      ........+....               
T Consensus       213 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~------~~~~~~~~~~~~~---------------  271 (325)
T 3kul_A          213 GGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM------TNRDVISSVEEGY---------------  271 (325)
T ss_dssp             ---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS------CHHHHHHHHHTTC---------------
T ss_pred             CCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC------CHHHHHHHHHcCC---------------
Confidence            2344668999999999999999999999999999998 99999765      2333332221100               


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+||.+||..||++|||+.|+++
T Consensus       272 --------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          272 --------------------------RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                      01123345678999999999999999999999986

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=2.3e-30  Score=232.14  Aligned_cols=175  Identities=25%  Similarity=0.328  Sum_probs=140.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||++ |++|+||||+||++..                  
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~------------------  157 (284)
T 2a19_B           97 IQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK-KLINRDLKPSNIFLVD------------------  157 (284)
T ss_dssp             EEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE------------------
T ss_pred             EEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCCHHHEEEcC------------------
Confidence            589999 78999999876556699999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                            ...++|+|||.+.....  ......+
T Consensus       158 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  183 (284)
T 2a19_B          158 ------------------------------------------------------TKQVKIGDFGLVTSLKNDGKRTRSKG  183 (284)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEESSCCSCCCCCCS
T ss_pred             ------------------------------------------------------CCCEEECcchhheeccccccccccCC
Confidence                                                                  35799999999865543  2344568


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..++.++|||||||++|+|++|..||...        ......+.                       
T Consensus       184 ~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--------~~~~~~~~-----------------------  232 (284)
T 2a19_B          184 TLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET--------SKFFTDLR-----------------------  232 (284)
T ss_dssp             CCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--------HHHHHHHH-----------------------
T ss_pred             cccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH--------HHHHHHhh-----------------------
Confidence            99999999999999999999999999999999998877421        01100000                       


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                                           ....+...+..+.+||.+||..||++|||+.|+++|.|.-..
T Consensus       233 ---------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~  274 (284)
T 2a19_B          233 ---------------------DGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK  274 (284)
T ss_dssp             ---------------------TTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC
T ss_pred             ---------------------cccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhh
Confidence                                 000122335678899999999999999999999999876653

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=4.7e-30  Score=228.67  Aligned_cols=173  Identities=26%  Similarity=0.399  Sum_probs=136.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus        80 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~~-------------------  138 (268)
T 3sxs_A           80 IVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESH-QFIHRDLAARNCLVD-------------------  138 (268)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEEESSCSGGGEEEC-------------------
T ss_pred             EEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeecCCcCcceEEEC-------------------
Confidence            589999 899999998753 3589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       139 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  165 (268)
T 3sxs_A          139 -----------------------------------------------------RDLCVKVSDFGMTRYVLDDQYVSSVGT  165 (268)
T ss_dssp             -----------------------------------------------------TTCCEEECCTTCEEECCTTCEEECCSC
T ss_pred             -----------------------------------------------------CCCCEEEccCccceecchhhhhcccCC
Confidence                                                                 3457999999998654432    1223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||...      ........+...  .               
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~------~~~~~~~~~~~~--~---------------  222 (268)
T 3sxs_A          166 KFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY------TNSEVVLKVSQG--H---------------  222 (268)
T ss_dssp             CCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHHHHHTT--C---------------
T ss_pred             CcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc------ChHHHHHHHHcC--C---------------
Confidence            44567999999999899999999999999999998 99999765      222222222110  0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       223 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          223 ------------------------RLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                    001122335688999999999999999999999986

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=3.9e-30  Score=236.43  Aligned_cols=173  Identities=20%  Similarity=0.333  Sum_probs=135.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ +++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++..                  
T Consensus        93 ~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivH~Dikp~NIll~~------------------  152 (327)
T 3poz_A           93 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT------------------  152 (327)
T ss_dssp             EEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE------------------
T ss_pred             EEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCChheEEECC------------------
Confidence            478888 899999998753 4589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                            ...++|+|||.+......     ...
T Consensus       153 ------------------------------------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~  178 (327)
T 3poz_A          153 ------------------------------------------------------PQHVKITDFGLAKLLGAEEKEYHAEG  178 (327)
T ss_dssp             ------------------------------------------------------TTEEEECCTTHHHHHTTTCC------
T ss_pred             ------------------------------------------------------CCCEEEccCcceeEccCCcccccccC
Confidence                                                                  357999999998654321     223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..+|..|+|||++.+..++.++|||||||++|+|++ |..||.+..      .... ..+.....               
T Consensus       179 ~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~-~~~~~~~~---------------  236 (327)
T 3poz_A          179 GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------ASEI-SSILEKGE---------------  236 (327)
T ss_dssp             -CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGH-HHHHHTTC---------------
T ss_pred             CCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC------HHHH-HHHHHcCC---------------
Confidence            345778999999999999999999999999999999 999997652      1111 11111000               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                               ....+...+..+.+|+.+||+.||++|||+.|++++
T Consensus       237 -------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          237 -------------------------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             -------------------------CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             -------------------------CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence                                     011233456789999999999999999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.96  E-value=9.1e-30  Score=244.47  Aligned_cols=179  Identities=23%  Similarity=0.415  Sum_probs=140.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......++...+..++.||+.||+|||++ ||+||||||+||+++                   
T Consensus       259 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nill~-------------------  318 (454)
T 1qcf_A          259 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR-NYIHRDLRAANILVS-------------------  318 (454)
T ss_dssp             EEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCSGGGEEEC-------------------
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCCHHHEEEC-------------------
Confidence            589999 89999999865434588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       319 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~  345 (454)
T 1qcf_A          319 -----------------------------------------------------ASLVCKIADFGLARVIEDNEYTAREGA  345 (454)
T ss_dssp             -----------------------------------------------------TTCCEEECSTTGGGGBCCHHHHTTCSS
T ss_pred             -----------------------------------------------------CCCcEEEeeCCCceEcCCCceeccCCC
Confidence                                                                 3457999999999655421    2223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++....++.++|||||||++|+|++ |..||.+.      .....+..+..  |.               
T Consensus       346 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~------~~~~~~~~i~~--~~---------------  402 (454)
T 1qcf_A          346 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM------SNPEVIRALER--GY---------------  402 (454)
T ss_dssp             SSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHH--TC---------------
T ss_pred             cccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--CC---------------
Confidence            45678999999999999999999999999999999 99999875      23333332221  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc--CCCcCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSL  299 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~--hpwf~~  299 (329)
                                              ..+.+..++..+.+||.+||..||++|||+.+|++  ..+++.
T Consensus       403 ------------------------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          403 ------------------------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence                                    01123345678999999999999999999999976  345544

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.96  E-value=1.1e-29  Score=229.04  Aligned_cols=177  Identities=29%  Similarity=0.481  Sum_probs=129.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus        96 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~-~i~H~Dlkp~Nil~~~------------------  155 (289)
T 3og7_A           96 IVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAK-SIIHRDLKSNNIFLHE------------------  155 (289)
T ss_dssp             EEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEET------------------
T ss_pred             EEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CcccccCccceEEECC------------------
Confidence            589999 899999996543 4589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                            ...++|+|||.+.....     ....
T Consensus       156 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  181 (289)
T 3og7_A          156 ------------------------------------------------------DNTVKIGDFGLATEKSRWSGSHQFEQ  181 (289)
T ss_dssp             ------------------------------------------------------TTEEEECCCC----------------
T ss_pred             ------------------------------------------------------CCCEEEccceeccccccccccccccc
Confidence                                                                  45799999999854432     2234


Q ss_pred             CCCCCCCcchHHhh---cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          155 EIQTRQYRAPEVIL---RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~---~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ..|++.|+|||++.   +..++.++|||||||++|+|++|..||...      .....+..+.......+.         
T Consensus       182 ~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~------~~~~~~~~~~~~~~~~~~---------  246 (289)
T 3og7_A          182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI------NNRDQIIEMVGRGSLSPD---------  246 (289)
T ss_dssp             --CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC------CCHHHHHHHHHHTSCCCC---------
T ss_pred             cCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc------chHHHHHHHhcccccCcc---------
Confidence            46899999999987   567899999999999999999999999775      233333333322111100         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                 ........+..+.+||.+||+.||++|||+.|+++
T Consensus       247 ---------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          247 ---------------------------LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             ---------------------------TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                                       00122344678999999999999999999999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.96  E-value=5.9e-30  Score=229.39  Aligned_cols=173  Identities=21%  Similarity=0.308  Sum_probs=131.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~-------------------  151 (278)
T 1byg_A           92 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLVS-------------------  151 (278)
T ss_dssp             EEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCcceEEEe-------------------
Confidence            589999 78999999876433478999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||.+...........+++
T Consensus       152 -----------------------------------------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~  178 (278)
T 1byg_A          152 -----------------------------------------------------EDNVAKVSDFGLTKEASSTQDTGKLPV  178 (278)
T ss_dssp             -----------------------------------------------------TTSCEEECCCCC------------CCT
T ss_pred             -----------------------------------------------------CCCcEEEeeccccccccccccCCCccc
Confidence                                                                 245799999999976665555556788


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||++.+..++.++|||||||++|+|++ |..||....      .......+..  +                    
T Consensus       179 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~------~~~~~~~~~~--~--------------------  230 (278)
T 1byg_A          179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK--G--------------------  230 (278)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC------GGGHHHHHTT--T--------------------
T ss_pred             cccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc--C--------------------
Confidence            9999999999999999999999999999998 999997652      1222211110  0                    


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                         .....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       231 -------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          231 -------------------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             -------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence                               001123345678999999999999999999999875

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.96  E-value=1.1e-29  Score=227.96  Aligned_cols=173  Identities=18%  Similarity=0.287  Sum_probs=135.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||++..                  
T Consensus        89 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dlkp~Nil~~~------------------  148 (281)
T 3cc6_A           89 IIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESI-NCVHRDIAVRNILVAS------------------  148 (281)
T ss_dssp             EEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEEE------------------
T ss_pred             EEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHC-CcccCCCccceEEECC------------------
Confidence            589999 899999998753 4589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       149 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  174 (281)
T 3cc6_A          149 ------------------------------------------------------PECVKLGDFGLSRYIEDEDYYKASVT  174 (281)
T ss_dssp             ------------------------------------------------------TTEEEECCCCGGGCC---------CC
T ss_pred             ------------------------------------------------------CCcEEeCccCCCcccccccccccccC
Confidence                                                                  347999999998655432    2233


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||....      .......+... .                
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~------~~~~~~~~~~~-~----------------  231 (281)
T 3cc6_A          175 RLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLE------NKDVIGVLEKG-D----------------  231 (281)
T ss_dssp             CCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------GGGHHHHHHHT-C----------------
T ss_pred             CCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCC------hHHHHHHHhcC-C----------------
Confidence            45778999999999999999999999999999998 999997652      22222222110 0                


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+||.+||..||++|||+.|++++
T Consensus       232 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          232 ------------------------RLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence                                    011223346789999999999999999999999874

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.4e-30  Score=232.22  Aligned_cols=185  Identities=22%  Similarity=0.375  Sum_probs=133.9

Q ss_pred             Cccccc-chhHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHHh---hCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-KGLELNKVREICKYILTGLDYLHR---ELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-~~l~~~~~~~i~~qll~al~~lH~---~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      +||||+ |++|.+++..... ..++...+..++.|++.||.|||+   + ||+||||||+||++...             
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~-~ivH~dlkp~NIll~~~-------------  141 (307)
T 2eva_A           76 LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK-ALIHRDLKPPNLLLVAG-------------  141 (307)
T ss_dssp             EEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSS-CCCCCCCSGGGEEEETT-------------
T ss_pred             EEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCC-CeecCCCChhHEEEeCC-------------
Confidence            589999 8999999986532 236788999999999999999998   5 89999999999999431             


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccC
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEE  155 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~  155 (329)
                                                                                ...++|+|||.+..........
T Consensus       142 ----------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~  163 (307)
T 2eva_A          142 ----------------------------------------------------------GTVLKICDFGTACDIQTHMTNN  163 (307)
T ss_dssp             ----------------------------------------------------------TTEEEECCCCC-----------
T ss_pred             ----------------------------------------------------------CCEEEEcccccccccccccccC
Confidence                                                                      1247999999997666555566


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .|++.|+|||++.+..++.++|||||||++|+|++|..||....     .....+.. ....+..               
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~-~~~~~~~---------------  222 (307)
T 2eva_A          164 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG-----GPAFRIMW-AVHNGTR---------------  222 (307)
T ss_dssp             -CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTC-----SSHHHHHH-HHHTTCC---------------
T ss_pred             CCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhC-----ccHHHHHH-HHhcCCC---------------
Confidence            78999999999999999999999999999999999999997542     11111100 0001110               


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc-----CCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ-----HPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~-----hpwf~~~~~  302 (329)
                                              .......+..+.+||.+||+.||++|||+.|+++     .+++.....
T Consensus       223 ------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~  270 (307)
T 2eva_A          223 ------------------------PPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADE  270 (307)
T ss_dssp             ------------------------CCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTTS
T ss_pred             ------------------------CCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCCC
Confidence                                    0112234568899999999999999999999987     355554443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.96  E-value=6.9e-30  Score=232.44  Aligned_cols=174  Identities=22%  Similarity=0.385  Sum_probs=137.0

Q ss_pred             Cccccc-chhHHHHHHhhcC----------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI   57 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Ni   57 (329)
                      +||||+ |++|.+++.....                      ..++...+..++.||+.||.|||++ ||+||||||+||
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dikp~NI  181 (314)
T 2ivs_A          103 LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM-KLVHRDLAARNI  181 (314)
T ss_dssp             EEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGE
T ss_pred             EEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC-CCcccccchheE
Confidence            589999 8999999987532                      2388999999999999999999995 999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCce
Q 020248           58 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  137 (329)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (329)
                      ++..                                                                        ...+
T Consensus       182 li~~------------------------------------------------------------------------~~~~  189 (314)
T 2ivs_A          182 LVAE------------------------------------------------------------------------GRKM  189 (314)
T ss_dssp             EEET------------------------------------------------------------------------TTEE
T ss_pred             EEcC------------------------------------------------------------------------CCCE
Confidence            9933                                                                        4579


Q ss_pred             EEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHH
Q 020248          138 KVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  211 (329)
Q Consensus       138 ~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~  211 (329)
                      +|+|||.+.....     ......+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ......
T Consensus       190 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~  263 (314)
T 2ivs_A          190 KISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP------PERLFN  263 (314)
T ss_dssp             EECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHH
T ss_pred             EEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHH
Confidence            9999999865432     1223355778999999999999999999999999999999 999997652      222221


Q ss_pred             HHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH
Q 020248          212 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  291 (329)
Q Consensus       212 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el  291 (329)
                      .+..  +.                                       ....+...+..+.+||.+||+.||++|||+.|+
T Consensus       264 ~~~~--~~---------------------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l  302 (314)
T 2ivs_A          264 LLKT--GH---------------------------------------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADI  302 (314)
T ss_dssp             HHHT--TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             Hhhc--CC---------------------------------------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence            1110  00                                       011233446789999999999999999999999


Q ss_pred             hcC
Q 020248          292 LQH  294 (329)
Q Consensus       292 l~h  294 (329)
                      +++
T Consensus       303 ~~~  305 (314)
T 2ivs_A          303 SKD  305 (314)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=1.5e-29  Score=230.17  Aligned_cols=175  Identities=25%  Similarity=0.384  Sum_probs=136.6

Q ss_pred             Cccccc-chhHHHHHHhhcC----------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI   63 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~   63 (329)
                      +||||+ |++|.+++.....                ..++...+..++.||+.||.|||++ |++||||||+||+++.  
T Consensus       104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~--  180 (313)
T 1t46_A          104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNILLTH--  180 (313)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEET--
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCccceEEEcC--
Confidence            589999 8899999987642                1489999999999999999999995 9999999999999933  


Q ss_pred             CCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecC
Q 020248           64 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  143 (329)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg  143 (329)
                                                                                            ...++|+|||
T Consensus       181 ----------------------------------------------------------------------~~~~kl~Dfg  190 (313)
T 1t46_A          181 ----------------------------------------------------------------------GRITKICDFG  190 (313)
T ss_dssp             ----------------------------------------------------------------------TTEEEECCCG
T ss_pred             ----------------------------------------------------------------------CCCEEEcccc
Confidence                                                                                  4578999999


Q ss_pred             ccccccccc-----ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHh
Q 020248          144 NACRANKQF-----AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELI  217 (329)
Q Consensus       144 ~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~  217 (329)
                      .+.......     ....+++.|+|||++.+..++.++|||||||++|+|++ |..||....      ....+..+....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~  264 (313)
T 1t46_A          191 LARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP------VDSKFYKMIKEG  264 (313)
T ss_dssp             GGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC------SSHHHHHHHHHT
T ss_pred             ccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc------chhHHHHHhccC
Confidence            986554321     22345678999999999999999999999999999998 999997652      111111111100


Q ss_pred             CCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       218 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                      -                                        ....+...+..+.+||.+||..||++|||+.|++++
T Consensus       265 ~----------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          265 F----------------------------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             C----------------------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             C----------------------------------------CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence            0                                        001123346789999999999999999999999874

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.96  E-value=9.7e-30  Score=234.46  Aligned_cols=174  Identities=18%  Similarity=0.318  Sum_probs=136.1

Q ss_pred             Cccccc-chhHHHHHHhhcC----------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI   57 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Ni   57 (329)
                      +||||+ |++|.+++.....                      ..++...+..++.||+.||.|||++ ||+||||||+||
T Consensus       127 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NI  205 (343)
T 1luf_A          127 LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNC  205 (343)
T ss_dssp             EEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGE
T ss_pred             EEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceE
Confidence            589999 8899999987421                      4589999999999999999999995 999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCce
Q 020248           58 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  137 (329)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (329)
                      +++                                                                        ....+
T Consensus       206 l~~------------------------------------------------------------------------~~~~~  213 (343)
T 1luf_A          206 LVG------------------------------------------------------------------------ENMVV  213 (343)
T ss_dssp             EEC------------------------------------------------------------------------GGGCE
T ss_pred             EEC------------------------------------------------------------------------CCCeE
Confidence            993                                                                        24579


Q ss_pred             EEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHH
Q 020248          138 KVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLA  211 (329)
Q Consensus       138 ~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~  211 (329)
                      +|+|||.+.....     ......+++.|+|||++.+..++.++|||||||++|+|++ |..||.+.      .......
T Consensus       214 kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~------~~~~~~~  287 (343)
T 1luf_A          214 KIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM------AHEEVIY  287 (343)
T ss_dssp             EECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHH
T ss_pred             EEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC------ChHHHHH
Confidence            9999999855432     1223456788999999999999999999999999999998 99999765      2222222


Q ss_pred             HHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH
Q 020248          212 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  291 (329)
Q Consensus       212 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el  291 (329)
                      .+..  +..                                       ...+...+..+.+||++||..||++|||+.|+
T Consensus       288 ~~~~--~~~---------------------------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~  326 (343)
T 1luf_A          288 YVRD--GNI---------------------------------------LACPENCPLELYNLMRLCWSKLPADRPSFCSI  326 (343)
T ss_dssp             HHHT--TCC---------------------------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HHhC--CCc---------------------------------------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence            2211  000                                       01233446789999999999999999999999


Q ss_pred             hcC
Q 020248          292 LQH  294 (329)
Q Consensus       292 l~h  294 (329)
                      +++
T Consensus       327 ~~~  329 (343)
T 1luf_A          327 HRI  329 (343)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=7.5e-30  Score=235.62  Aligned_cols=176  Identities=19%  Similarity=0.316  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhhcC---------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL   58 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil   58 (329)
                      +||||+ |++|.+++.....                     ..++...+..++.||+.||.|||++ ||+||||||+||+
T Consensus       126 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl  204 (344)
T 1rjb_A          126 LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVL  204 (344)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEE
T ss_pred             EEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEE
Confidence            589999 8899999987532                     2378999999999999999999995 9999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceE
Q 020248           59 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  138 (329)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (329)
                      +..                                                                        ...++
T Consensus       205 l~~------------------------------------------------------------------------~~~~k  212 (344)
T 1rjb_A          205 VTH------------------------------------------------------------------------GKVVK  212 (344)
T ss_dssp             EET------------------------------------------------------------------------TTEEE
T ss_pred             EcC------------------------------------------------------------------------CCcEE
Confidence            933                                                                        45799


Q ss_pred             EeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHH
Q 020248          139 VVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLAL  212 (329)
Q Consensus       139 l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~  212 (329)
                      |+|||.+......     .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ....+..
T Consensus       213 L~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~  286 (344)
T 1rjb_A          213 ICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP------VDANFYK  286 (344)
T ss_dssp             ECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------CSHHHHH
T ss_pred             eCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC------cHHHHHH
Confidence            9999999654322     122345678999999999999999999999999999998 999997652      1111111


Q ss_pred             HHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh
Q 020248          213 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  292 (329)
Q Consensus       213 i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell  292 (329)
                      +... +.                                       ....+...+..+.+||.+||..||++|||+.|++
T Consensus       287 ~~~~-~~---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~  326 (344)
T 1rjb_A          287 LIQN-GF---------------------------------------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLT  326 (344)
T ss_dssp             HHHT-TC---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             HHhc-CC---------------------------------------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence            1110 00                                       0012233467899999999999999999999999


Q ss_pred             cCC
Q 020248          293 QHP  295 (329)
Q Consensus       293 ~hp  295 (329)
                      +|-
T Consensus       327 ~~l  329 (344)
T 1rjb_A          327 SFL  329 (344)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.96  E-value=8.3e-30  Score=233.60  Aligned_cols=198  Identities=22%  Similarity=0.224  Sum_probs=142.1

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhC---CccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHREL---GIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~---giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +||||| |++|.+++.....  ..++...+..++.|++.||.|||+ .   ||+||||||+||++.              
T Consensus       104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~-~~~~~ivH~Dlkp~Nil~~--------------  168 (326)
T 3uim_A          104 LVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHD-HCDPKIIHRDVKAANILLD--------------  168 (326)
T ss_dssp             EEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHH-SSSSCEECCCCSGGGEEEC--------------
T ss_pred             EEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEeCCCchhhEEEC--------------
Confidence            589999 8899999987542  348999999999999999999998 7   999999999999993              


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  150 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----  150 (329)
                                                                                ....++|+|||.+.....    
T Consensus       169 ----------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~  190 (326)
T 3uim_A          169 ----------------------------------------------------------EEFEAVVGDFGLAKLMDYKDTH  190 (326)
T ss_dssp             ----------------------------------------------------------TTCCEEECCCSSCEECCSSSSC
T ss_pred             ----------------------------------------------------------CCCCEEeccCccccccCccccc
Confidence                                                                      245799999999965432    


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|..||........ .......            +......
T Consensus       191 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~------------~~~~~~~  257 (326)
T 3uim_A          191 VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND-DDVMLLD------------WVKGLLK  257 (326)
T ss_dssp             EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTT-SCSBHHH------------HHTTTTS
T ss_pred             ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccc-cchhHHH------------HHHHHhh
Confidence            22334589999999999999999999999999999999999999963210000 0000000            0000000


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      ...       .....       ..  ......+......+.+|+.+||+.||++|||+.|+++|-+-...
T Consensus       258 ~~~-------~~~~~-------~~--~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~  311 (326)
T 3uim_A          258 EKK-------LEALV-------DV--DLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGL  311 (326)
T ss_dssp             SCC-------STTSS-------CT--TCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred             chh-------hhhhc-------Ch--hhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence            000       00000       00  00112345667899999999999999999999999998544433

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.4e-29  Score=232.83  Aligned_cols=172  Identities=19%  Similarity=0.313  Sum_probs=131.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ +++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++..                  
T Consensus        93 ~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~~------------------  152 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT------------------  152 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE------------------
T ss_pred             EEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhC-CCcCCCCCHHHEEEcC------------------
Confidence            478888 899999998754 4589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~~  154 (329)
                                                                            ...++|+|||.+......     ...
T Consensus       153 ------------------------------------------------------~~~~kL~DfG~a~~~~~~~~~~~~~~  178 (327)
T 3lzb_A          153 ------------------------------------------------------PQHVKITDFGLAKLLGAEEKEYHAEG  178 (327)
T ss_dssp             ------------------------------------------------------TTEEEECCTTC---------------
T ss_pred             ------------------------------------------------------CCCEEEccCcceeEccCccccccccC
Confidence                                                                  357999999999654321     222


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+. ...               
T Consensus       179 ~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~-~~~---------------  236 (327)
T 3lzb_A          179 GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------ASEISSILE-KGE---------------  236 (327)
T ss_dssp             -CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHH-TTC---------------
T ss_pred             CCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHH-cCC---------------
Confidence            345678999999999999999999999999999999 999997652      222211111 000               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ....+...+..+.+||++||+.||++|||+.|+++
T Consensus       237 -------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          237 -------------------------RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             -------------------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                     01123345668999999999999999999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.96  E-value=3e-30  Score=236.75  Aligned_cols=187  Identities=28%  Similarity=0.434  Sum_probs=123.0

Q ss_pred             CcccccchhHHHHHHhh---cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYS---RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~---~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||++++|.+++...   ....++...+..++.|++.||.|||++.|++||||||+||+++.                
T Consensus        98 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~----------------  161 (327)
T 3aln_A           98 ICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDR----------------  161 (327)
T ss_dssp             EEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEET----------------
T ss_pred             EEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcC----------------
Confidence            58999977888887742   23568999999999999999999998339999999999999933                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--cccC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--FAEE  155 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--~~~~  155 (329)
                                                                              ...++|+|||.+......  ....
T Consensus       162 --------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~  185 (327)
T 3aln_A          162 --------------------------------------------------------SGNIKLCDFGISGQLVDSIAKTRD  185 (327)
T ss_dssp             --------------------------------------------------------TTEEEECCCSSSCC----------
T ss_pred             --------------------------------------------------------CCCEEEccCCCceecccccccccC
Confidence                                                                    457999999998655432  2334


Q ss_pred             CCCCCCcchHHh----hcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          156 IQTRQYRAPEVI----LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       156 ~~~~~y~aPE~~----~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      .|++.|+|||++    .+..++.++|||||||++|+|++|..||.....     ....   +..                
T Consensus       186 ~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~---~~~----------------  241 (327)
T 3aln_A          186 AGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNS-----VFDQ---LTQ----------------  241 (327)
T ss_dssp             --------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC---------------CC----------------
T ss_pred             CCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcch-----HHHH---HHH----------------
Confidence            688999999998    456789999999999999999999999975420     0000   000                


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                        ...  +.....              ........+..+.+||++||..||++|||+.|+++||||....
T Consensus       242 --~~~--~~~~~~--------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          242 --VVK--GDPPQL--------------SNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             --CCC--SCCCCC--------------CCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             --Hhc--CCCCCC--------------CCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence              000  000000              0001123467899999999999999999999999999998654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.96  E-value=8.5e-30  Score=238.92  Aligned_cols=172  Identities=22%  Similarity=0.362  Sum_probs=134.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..++...+..++.||+.||+|||++ |++||||||+||+++                   
T Consensus       189 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~-~ivHrDlkp~Nil~~-------------------  247 (377)
T 3cbl_A          189 IVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESK-CCIHRDLAARNCLVT-------------------  247 (377)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CcCCcccCHHHEEEc-------------------
Confidence            589999 899999998653 3489999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccc-----c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFA-----E  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~-----~  154 (329)
                                                                           ....++|+|||.+........     .
T Consensus       248 -----------------------------------------------------~~~~~kl~DfG~s~~~~~~~~~~~~~~  274 (377)
T 3cbl_A          248 -----------------------------------------------------EKNVLKISDFGMSREEADGVYAASGGL  274 (377)
T ss_dssp             -----------------------------------------------------TTCCEEECCGGGCEECTTSEEECCSSC
T ss_pred             -----------------------------------------------------CCCcEEECcCCCceecCCCceeecCCC
Confidence                                                                 345799999999865433211     1


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..++..|+|||++.+..++.++|||||||++|+|++ |..||....      ...... ......               
T Consensus       275 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~------~~~~~~-~~~~~~---------------  332 (377)
T 3cbl_A          275 RQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS------NQQTRE-FVEKGG---------------  332 (377)
T ss_dssp             CEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC------HHHHHH-HHHTTC---------------
T ss_pred             CCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHH-HHHcCC---------------
Confidence            123567999999999999999999999999999998 999997652      222211 111100               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               ..+.+..++..+.+||.+||+.||++|||+.++++
T Consensus       333 -------------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          333 -------------------------RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             -------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                                     11123445678999999999999999999999975

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.6e-29  Score=232.34  Aligned_cols=182  Identities=21%  Similarity=0.278  Sum_probs=131.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhC--------CccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL--------GIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~--------giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||| |++|.+++...   .++...+..++.|++.||.|||+ .        ||+||||||+||+++           
T Consensus       112 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~-~~~~~~~~~~ivH~Dikp~Nill~-----------  176 (337)
T 3mdy_A          112 LITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHT-EIFSTQGKPAIAHRDLKSKNILVK-----------  176 (337)
T ss_dssp             EEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHS-CBCSTTCBCCEECSCCCGGGEEEC-----------
T ss_pred             EEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH-hhhhhccCCCEEecccchHHEEEC-----------
Confidence            589999 88999999764   49999999999999999999998 6        999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  151 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~  151 (329)
                                                                                   ....++|+|||.+......
T Consensus       177 -------------------------------------------------------------~~~~~kl~Dfg~a~~~~~~  195 (337)
T 3mdy_A          177 -------------------------------------------------------------KNGTCCIADLGLAVKFISD  195 (337)
T ss_dssp             -------------------------------------------------------------TTSCEEECCCTTCEECC--
T ss_pred             -------------------------------------------------------------CCCCEEEEeCCCceeeccc
Confidence                                                                         2457999999998554321


Q ss_pred             -------cccCCCCCCCcchHHhhcCCCCcc------chHHHHHHHHHHHHhCCcCC----------CCCCCCCCCCchH
Q 020248          152 -------FAEEIQTRQYRAPEVILRAGYSFS------VDMWSFACTAFELATGDMLF----------APKSGQGFCEDED  208 (329)
Q Consensus       152 -------~~~~~~~~~y~aPE~~~~~~~s~~------~DiwslG~il~~l~~g~~pf----------~~~~~~~~~~~~~  208 (329)
                             .....||+.|+|||++.+..++..      +|||||||++|+|++|..||          ......  .....
T Consensus       196 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~--~~~~~  273 (337)
T 3mdy_A          196 TNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPS--DPSYE  273 (337)
T ss_dssp             -------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS--SCCHH
T ss_pred             cccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCC--CCchh
Confidence                   124578999999999988766655      99999999999999995444          332110  00111


Q ss_pred             HHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH
Q 020248          209 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  288 (329)
Q Consensus       209 ~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta  288 (329)
                      .+..+....+..|                  .           ....     ..+..++..+.+||.+||+.||++|||+
T Consensus       274 ~~~~~~~~~~~~~------------------~-----------~~~~-----~~~~~~~~~l~~li~~~l~~dP~~Rps~  319 (337)
T 3mdy_A          274 DMREIVCIKKLRP------------------S-----------FPNR-----WSSDECLRQMGKLMTECWAHNPASRLTA  319 (337)
T ss_dssp             HHHHHHTTSCCCC------------------C-----------CCGG-----GGGSHHHHHHHHHHHHHSCSSGGGSCCH
T ss_pred             hhHHHHhhhccCc------------------c-----------cccc-----chhhHHHHHHHHHHHHhhhhChhhCCCH
Confidence            1111110000000                  0           0000     0122457789999999999999999999


Q ss_pred             HHHhcC
Q 020248          289 QQCLQH  294 (329)
Q Consensus       289 ~ell~h  294 (329)
                      .|+++|
T Consensus       320 ~ell~~  325 (337)
T 3mdy_A          320 LRVKKT  325 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.4e-29  Score=227.74  Aligned_cols=173  Identities=21%  Similarity=0.332  Sum_probs=137.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus        86 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~------------------  146 (288)
T 3kfa_A           86 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVGE------------------  146 (288)
T ss_dssp             EEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH-TCCCSCCSGGGEEECG------------------
T ss_pred             EEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC-CccCCCCCcceEEEcC------------------
Confidence            589999 79999999886656699999999999999999999996 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc----ccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF----AEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~----~~~  155 (329)
                                                                            ...++|+|||.+.......    ...
T Consensus       147 ------------------------------------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~  172 (288)
T 3kfa_A          147 ------------------------------------------------------NHLVKVADFGLSRLMTGDTYTAHAGA  172 (288)
T ss_dssp             ------------------------------------------------------GGCEEECCCCGGGTSCSSSSEEETTE
T ss_pred             ------------------------------------------------------CCCEEEccCccceeccCCccccccCC
Confidence                                                                  4579999999996554321    223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||....      .......+...                  
T Consensus       173 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~------~~~~~~~~~~~------------------  228 (288)
T 3kfa_A          173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEKD------------------  228 (288)
T ss_dssp             EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHTT------------------
T ss_pred             ccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhcc------------------
Confidence            44678999999999999999999999999999999 999997652      22222211110                  


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             .....+...+..+.+||++||..||++|||+.|+++
T Consensus       229 -----------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          229 -----------------------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             -----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHH
Confidence                                   001123344678999999999999999999999976

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.96  E-value=1.2e-29  Score=231.04  Aligned_cols=175  Identities=25%  Similarity=0.388  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++.....              ..++...+..++.||+.||.|||++ ||+||||||+||++.     
T Consensus       109 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~~-----  182 (316)
T 2xir_A          109 VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS-----  182 (316)
T ss_dssp             EEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-----
T ss_pred             EEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC-CcccccCccceEEEC-----
Confidence            589999 8899999987542              1288999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       183 -------------------------------------------------------------------~~~~~kl~Dfg~~  195 (316)
T 2xir_A          183 -------------------------------------------------------------------EKNVVKICDFGLA  195 (316)
T ss_dssp             -------------------------------------------------------------------GGGCEEECCCGGG
T ss_pred             -------------------------------------------------------------------CCCCEEECCCccc
Confidence                                                                               2457999999998


Q ss_pred             cccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      ......     .....+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..     ........+..  +.
T Consensus       196 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~-----~~~~~~~~~~~--~~  268 (316)
T 2xir_A          196 RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-----IDEEFCRRLKE--GT  268 (316)
T ss_dssp             SCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-----CSHHHHHHHHH--TC
T ss_pred             cccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc-----hhHHHHHHhcc--Cc
Confidence            654321     122345778999999999999999999999999999998 999997652     11112111111  00


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+...+..+.++|.+||+.||++|||+.|+++|
T Consensus       269 ---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          269 ---------------------------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                                   011223346688999999999999999999999986

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.96  E-value=2.2e-29  Score=224.05  Aligned_cols=172  Identities=17%  Similarity=0.261  Sum_probs=132.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||+. |  ++||||||+||+++.                
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~----------------  148 (271)
T 3kmu_A           86 LITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDE----------------  148 (271)
T ss_dssp             EEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECT----------------
T ss_pred             eeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcC----------------
Confidence            589999 88999999886555689999999999999999999995 9  999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ  157 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~  157 (329)
                                                                              ...++++|||++.....  ....+
T Consensus       149 --------------------------------------------------------~~~~~l~~~~~~~~~~~--~~~~~  170 (271)
T 3kmu_A          149 --------------------------------------------------------DMTARISMADVKFSFQS--PGRMY  170 (271)
T ss_dssp             --------------------------------------------------------TSCEEEEGGGSCCTTSC--TTCBS
T ss_pred             --------------------------------------------------------CcceeEEeccceeeecc--cCccC
Confidence                                                                    34567777766543222  34567


Q ss_pred             CCCCcchHHhhcCCCCc---cchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          158 TRQYRAPEVILRAGYSF---SVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~---~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      |+.|+|||++.+..++.   ++|||||||++|+|++|..||....      .......+.. .+.               
T Consensus       171 t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~-~~~---------------  228 (271)
T 3kmu_A          171 APAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS------NMEIGMKVAL-EGL---------------  228 (271)
T ss_dssp             CGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC------HHHHHHHHHH-SCC---------------
T ss_pred             CccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC------hHHHHHHHHh-cCC---------------
Confidence            89999999998765544   7999999999999999999997652      2222222211 000               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       229 ------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          229 ------------------------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                    01123345678999999999999999999999986

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.96  E-value=1.7e-29  Score=228.30  Aligned_cols=186  Identities=23%  Similarity=0.310  Sum_probs=135.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..++...+..++.|++.||.|||++ ||+||||||+||+++.                  
T Consensus        90 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dikp~Nil~~~------------------  149 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-RYIHRDLATRNILVEN------------------  149 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcC-CcccCCCCHhhEEEcC------------------
Confidence            589999 899999998754 3489999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       150 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  175 (295)
T 3ugc_A          150 ------------------------------------------------------ENRVKIGDFGLTKVLPQDKEFFKVKE  175 (295)
T ss_dssp             ------------------------------------------------------TTEEEECCCCSCC-------------
T ss_pred             ------------------------------------------------------CCeEEEccCcccccccCCcceeeecc
Confidence                                                                  357999999999654321      22


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++|..||....           .......+..+....        
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~-----------~~~~~~~~~~~~~~~--------  236 (295)
T 3ugc_A          176 PGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQM--------  236 (295)
T ss_dssp             CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHH-----------HHHHHHHCTTCCTHH--------
T ss_pred             CCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCCh-----------HHHHhhhcCccccch--------
Confidence            2345667999999999999999999999999999999999886431           111111221110000        


Q ss_pred             ccCccCchhhhccccccchhHHHh--hhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                              ..      ....+...  ...+.+..++..+.+||.+||+.||++|||+.|+++
T Consensus       237 --------~~------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          237 --------IV------FHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             --------HH------HHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             --------hH------HHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                    00      00000111  112345566789999999999999999999999975

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.96  E-value=1.4e-29  Score=231.92  Aligned_cols=191  Identities=23%  Similarity=0.332  Sum_probs=139.2

Q ss_pred             Cccccc-chhHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++.....  ..++...+..++.||+.||.|||++ |++||||||+||+++                 
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~ivH~dlkp~Nil~~-----------------  173 (321)
T 2qkw_B          112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR-AIIHRDVKSINILLD-----------------  173 (321)
T ss_dssp             EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCSTTEEEC-----------------
T ss_pred             EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC-CeecCCCCHHHEEEC-----------------
Confidence            589999 8899998875432  2488999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QF  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~  152 (329)
                                                                             ....++|+|||.+.....     ..
T Consensus       174 -------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~  198 (321)
T 2qkw_B          174 -------------------------------------------------------ENFVPKITDFGISKKGTELDQTHLS  198 (321)
T ss_dssp             -------------------------------------------------------TTCCEEECCCTTCEECSSSSCCCCB
T ss_pred             -------------------------------------------------------CCCCEEEeecccccccccccccccc
Confidence                                                                   345799999999865332     12


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....|++.|+|||++.+..++.++|||||||++|+|++|..||............. ...-....+.+           .
T Consensus       199 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~  266 (321)
T 2qkw_B          199 TVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAE-WAVESHNNGQL-----------E  266 (321)
T ss_dssp             CCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHH-HTHHHHTTTCC-----------C
T ss_pred             cccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHH-HhhhccccccH-----------H
Confidence            23357889999999999999999999999999999999999997653221111000 00000000000           0


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                      ...+.                   ..........+..+.+|+.+||+.||++|||+.|+++|-
T Consensus       267 ~~~~~-------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          267 QIVDP-------------------NLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             SSSSS-------------------SCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HhcCh-------------------hhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            00000                   000113455678999999999999999999999999763

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.96  E-value=1e-29  Score=233.33  Aligned_cols=182  Identities=21%  Similarity=0.375  Sum_probs=141.2

Q ss_pred             Cccccc-chhHHHHHHhhcC-----CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY-----KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGL   74 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~-----~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~   74 (329)
                      +||||+ |++|.+++.....     ..++...+..++.||+.||.|||++ ||+||||||+||++...            
T Consensus       110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~-~i~H~dlkp~NIli~~~------------  176 (327)
T 2yfx_A          110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN-HFIHRDIAARNCLLTCP------------  176 (327)
T ss_dssp             EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESCS------------
T ss_pred             EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC-CeecCcCCHhHEEEecC------------
Confidence            589999 9999999987642     2488999999999999999999995 99999999999999431            


Q ss_pred             CCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----
Q 020248           75 TPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----  150 (329)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----  150 (329)
                                                                               +....++|+|||.+.....    
T Consensus       177 ---------------------------------------------------------~~~~~~kl~Dfg~~~~~~~~~~~  199 (327)
T 2yfx_A          177 ---------------------------------------------------------GPGRVAKIGDFGMARDIYRASYY  199 (327)
T ss_dssp             ---------------------------------------------------------STTCCEEECCCHHHHHHHC----
T ss_pred             ---------------------------------------------------------CCcceEEECcccccccccccccc
Confidence                                                                     1234689999999854322    


Q ss_pred             -ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC
Q 020248          151 -QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG  228 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  228 (329)
                       ......+++.|+|||++.+..++.++|||||||++|+|++ |..||...      ........+..  +.         
T Consensus       200 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~------~~~~~~~~~~~--~~---------  262 (327)
T 2yfx_A          200 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK------SNQEVLEFVTS--GG---------  262 (327)
T ss_dssp             --CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHT--TC---------
T ss_pred             ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc------CHHHHHHHHhc--CC---------
Confidence             2223456788999999999999999999999999999998 99999765      22222222211  00         


Q ss_pred             CCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          229 AQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                    ....+...+..+.+||.+||+.||++|||+.|+++|.|+..
T Consensus       263 ------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          263 ------------------------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             ------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------------------------------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence                                          00122334668899999999999999999999999988654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.96  E-value=1.6e-29  Score=242.61  Aligned_cols=180  Identities=25%  Similarity=0.415  Sum_probs=138.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......++...+..++.||+.||+|||++ ||+||||||+||+++.                  
T Consensus       255 iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivHrDlkp~Nill~~------------------  315 (452)
T 1fmk_A          255 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE------------------  315 (452)
T ss_dssp             EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------------
T ss_pred             EEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChhhEEECC------------------
Confidence            589999 88999999865445689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       316 ------------------------------------------------------~~~~kl~DfG~a~~~~~~~~~~~~~~  341 (452)
T 1fmk_A          316 ------------------------------------------------------NLVCKVADFGLARLIEDNEYTARQGA  341 (452)
T ss_dssp             ------------------------------------------------------GGCEEECCCCTTC-------------
T ss_pred             ------------------------------------------------------CCCEEECCCccceecCCCceecccCC
Confidence                                                                  457999999999654421    1223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++.+..++.++|||||||++|+|++ |..||.+.      .....+..+..  |.               
T Consensus       342 ~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~------~~~~~~~~i~~--~~---------------  398 (452)
T 1fmk_A          342 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM------VNREVLDQVER--GY---------------  398 (452)
T ss_dssp             -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC------CHHHHHHHHHT--TC---------------
T ss_pred             cccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--CC---------------
Confidence            45678999999999999999999999999999999 99999865      22232222211  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc--CCCcCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSLR  300 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~--hpwf~~~  300 (329)
                                              ..+.+..++..+.+||.+||+.||++|||+.++++  ..+|...
T Consensus       399 ------------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          399 ------------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence                                    01123445678999999999999999999999987  3666543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=3.6e-29  Score=222.54  Aligned_cols=173  Identities=21%  Similarity=0.332  Sum_probs=136.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++.                  
T Consensus        80 lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dl~p~Nili~~------------------  139 (267)
T 3t9t_A           80 LVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVGE------------------  139 (267)
T ss_dssp             EEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSSCCGGGEEECG------------------
T ss_pred             EEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCchheEEECC------------------
Confidence            589999 889999998653 4589999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                            ...++|+|||.+.....    .....
T Consensus       140 ------------------------------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (267)
T 3t9t_A          140 ------------------------------------------------------NQVIKVSDFGMTRFVLDDQYTSSTGT  165 (267)
T ss_dssp             ------------------------------------------------------GGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             ------------------------------------------------------CCCEEEcccccccccccccccccccc
Confidence                                                                  45799999999865532    22334


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++.+..++.++|||||||++|+|++ |..||...      ........+...  .               
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~------~~~~~~~~i~~~--~---------------  222 (267)
T 3t9t_A          166 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR------SNSEVVEDISTG--F---------------  222 (267)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHTT--C---------------
T ss_pred             cccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC------CHHHHHHHHhcC--C---------------
Confidence            55778999999999999999999999999999999 89999765      222222222110  0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+|+.+||+.||++|||+.|++++
T Consensus       223 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          223 ------------------------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                    001122335688999999999999999999999864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=3.5e-30  Score=231.86  Aligned_cols=179  Identities=22%  Similarity=0.350  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++......              
T Consensus        89 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~Dlkp~NIll~~~~~~--------------  152 (289)
T 4fvq_A           89 LVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEEN-TLIHGNVCAKNILLIREEDR--------------  152 (289)
T ss_dssp             EEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEEECCBG--------------
T ss_pred             EEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhC-CeECCCcCcceEEEecCCcc--------------
Confidence            589999 899999998753 3489999999999999999999995 99999999999999543100              


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                        .......++|+|||.+...... ....+++
T Consensus       153 --------------------------------------------------~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~  181 (289)
T 4fvq_A          153 --------------------------------------------------KTGNPPFIKLSDPGISITVLPK-DILQERI  181 (289)
T ss_dssp             --------------------------------------------------GGTBCCEEEECCCCSCTTTSCH-HHHHHTT
T ss_pred             --------------------------------------------------cccccceeeeccCcccccccCc-cccCCcC
Confidence                                                              0011234899999998554432 2234678


Q ss_pred             CCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||++.+ ..++.++|||||||++|+|++|..|+....      +......+..                       
T Consensus       182 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~------~~~~~~~~~~-----------------------  232 (289)
T 4fvq_A          182 PWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL------DSQRKLQFYE-----------------------  232 (289)
T ss_dssp             TTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHHHHH-----------------------
T ss_pred             cccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc------chHHHHHHhh-----------------------
Confidence            8999999987 679999999999999999999654443321      1111111111                       


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                         .....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       233 -------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          233 -------------------DRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             -------------------TTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             -------------------ccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                               1111222234568899999999999999999999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.2e-29  Score=228.50  Aligned_cols=174  Identities=23%  Similarity=0.381  Sum_probs=137.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ |++||||||+||+++.                  
T Consensus        86 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nili~~------------------  145 (287)
T 1u59_A           86 LVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN------------------  145 (287)
T ss_dssp             EEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHHHHC-CEeeCCCchheEEEcC------------------
Confidence            589999 889999987532 4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       146 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  171 (287)
T 1u59_A          146 ------------------------------------------------------RHYAKISDFGLSKALGADDSYYTARS  171 (287)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECTTCSCEECCCC
T ss_pred             ------------------------------------------------------CCCEEECcccceeeeccCcceeeccc
Confidence                                                                  357999999999655321      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+++.|+|||++.+..++.++|||||||++|+|++ |..||....      .......+..  +.             
T Consensus       172 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~i~~--~~-------------  230 (287)
T 1u59_A          172 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK-------------  230 (287)
T ss_dssp             SSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--TC-------------
T ss_pred             cccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHhc--CC-------------
Confidence            2345788999999998899999999999999999998 999997652      2222222211  00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                                                ....+...+..+.+||.+||..||++|||+.|+++|-
T Consensus       231 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          231 --------------------------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             --------------------------cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                                      0112334567899999999999999999999999863

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.96  E-value=7.4e-30  Score=234.76  Aligned_cols=201  Identities=22%  Similarity=0.298  Sum_probs=136.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhC---------CccccCCCCCceeeecCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHREL---------GIIHTDLKPENILLVSTIDPSKDPI   70 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~---------giiH~Dlk~~Nil~~~~~~~~~~~~   70 (329)
                      |||||| |++|.+++....   ++...+..++.||+.||.|||+ .         ||+||||||+||++.          
T Consensus        89 lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~-~~~~~~~~~~~ivH~Dikp~Nill~----------  154 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHT-ELPRGDHYKPAISHRDLNSRNVLVK----------  154 (336)
T ss_dssp             EEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHC-CBCCGGGCBCCEECSSCSGGGEEEC----------
T ss_pred             EEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHh-hhccccccccceeecccccceEEEc----------
Confidence            589999 899999997653   6889999999999999999998 6         999999999999993          


Q ss_pred             CCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc
Q 020248           71 RSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK  150 (329)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~  150 (329)
                                                                                    ....++|+|||.+.....
T Consensus       155 --------------------------------------------------------------~~~~~kL~DFG~a~~~~~  172 (336)
T 3g2f_A          155 --------------------------------------------------------------NDGTCVISDFGLSMRLTG  172 (336)
T ss_dssp             --------------------------------------------------------------TTSCEEECCCTTCEECSS
T ss_pred             --------------------------------------------------------------CCCcEEEeeccceeeccc
Confidence                                                                          245799999999965432


Q ss_pred             -----------ccccCCCCCCCcchHHhhc-------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHH
Q 020248          151 -----------QFAEEIQTRQYRAPEVILR-------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLAL  212 (329)
Q Consensus       151 -----------~~~~~~~~~~y~aPE~~~~-------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~  212 (329)
                                 ......||+.|+|||++.+       ..++.++|||||||++|+|++|..||..........     ..
T Consensus       173 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~-----~~  247 (336)
T 3g2f_A          173 NRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQ-----MA  247 (336)
T ss_dssp             SSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCC-----CT
T ss_pred             ccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHH-----Hh
Confidence                       1224468999999999987       356788999999999999999988776543211110     00


Q ss_pred             HHHHhCCCcH-HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH
Q 020248          213 MMELIGKMPR-KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  291 (329)
Q Consensus       213 i~~~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el  291 (329)
                      +....+..|. ......      ........            .+..........+..+.+||.+||+.||++|||+.|+
T Consensus       248 ~~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~  309 (336)
T 3g2f_A          248 FQTEVGNHPTFEDMQVL------VSREKQRP------------KFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXA  309 (336)
T ss_dssp             THHHHCSSCCHHHHHHH------HTTSCCCC------------CCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             hhcccCCCchHHHHHhh------hcccccCC------------CCCcccccccchHHHHHHHHHHHhcCChhhCcchHHH
Confidence            1111111110 000000      00000000            0000001122356789999999999999999999999


Q ss_pred             hc------CCCcCCC
Q 020248          292 LQ------HPWLSLR  300 (329)
Q Consensus       292 l~------hpwf~~~  300 (329)
                      ++      ++|-+..
T Consensus       310 l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          310 EERMAELMMIWERNK  324 (336)
T ss_dssp             HHHHHHHHHCCCC--
T ss_pred             HHHHHHHHHHHHhcc
Confidence            54      6777654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.96  E-value=1e-29  Score=230.66  Aligned_cols=168  Identities=29%  Similarity=0.443  Sum_probs=126.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~-----------------  153 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK-----------------  153 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESSS-----------------
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEecC-----------------
Confidence            589999 88999999987655799999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          .....++|+|||.+....          
T Consensus       154 ----------------------------------------------------~~~~~~kl~Dfg~a~~~~----------  171 (299)
T 3m2w_A          154 ----------------------------------------------------RPNAILKLTDFGFAKETT----------  171 (299)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECT----------
T ss_pred             ----------------------------------------------------CCCCcEEEeccccccccc----------
Confidence                                                                113579999999984322          


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                               +..++.++|||||||++|+|++|..||........             ...          ......    
T Consensus       172 ---------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------------~~~----------~~~~~~----  215 (299)
T 3m2w_A          172 ---------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------------SPG----------MKTRIR----  215 (299)
T ss_dssp             ---------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------------CC----------SCCSSC----
T ss_pred             ---------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-------------hHH----------HHHHHh----
Confidence                     23467899999999999999999999976521000             000          000000    


Q ss_pred             chhhhccccccchhHHHhhhcCCC----hhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFS----ETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                       ......+    ...+..+.+||.+||+.||++|||+.|+++||||....
T Consensus       216 -----------------~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~  264 (299)
T 3m2w_A          216 -----------------MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  264 (299)
T ss_dssp             -----------------TTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGG
T ss_pred             -----------------hccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccc
Confidence                             0000011    22467899999999999999999999999999998754

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=1.9e-29  Score=231.61  Aligned_cols=174  Identities=20%  Similarity=0.317  Sum_probs=135.0

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++....              ...++...+..++.||+.||.|||++ ||+||||||+||+++.    
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~----  177 (327)
T 1fvr_A          103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVGE----  177 (327)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECG----
T ss_pred             EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCccceEEEcC----
Confidence            589999 889999998653              23589999999999999999999995 9999999999999932    


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                          ...++|+|||.+
T Consensus       178 --------------------------------------------------------------------~~~~kL~Dfg~~  189 (327)
T 1fvr_A          178 --------------------------------------------------------------------NYVAKIADFGLS  189 (327)
T ss_dssp             --------------------------------------------------------------------GGCEEECCTTCE
T ss_pred             --------------------------------------------------------------------CCeEEEcccCcC
Confidence                                                                                457999999998


Q ss_pred             ccccc--ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          146 CRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       146 ~~~~~--~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      .....  ......+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..   .   
T Consensus       190 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~------~~~~~~~~~~---~---  257 (327)
T 1fvr_A          190 RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ---G---  257 (327)
T ss_dssp             ESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHGGG---T---
T ss_pred             ccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc------HHHHHHHhhc---C---
Confidence            64332  2233455788999999999989999999999999999998 999997652      2111111100   0   


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                         .....+...+..+.+||.+||..||++|||+.|+++|
T Consensus       258 -----------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          258 -----------------------------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             -----------------------------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                               0011223446789999999999999999999999885

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=2.4e-29  Score=244.07  Aligned_cols=173  Identities=21%  Similarity=0.334  Sum_probs=138.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......++...+..++.||+.||+|||++ ||+||||||+||+++                   
T Consensus       293 lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~-------------------  352 (495)
T 1opk_A          293 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRNLAARNCLVG-------------------  352 (495)
T ss_dssp             EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEEEC-------------------
Confidence            589999 89999999876555689999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||++......    ....
T Consensus       353 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~  379 (495)
T 1opk_A          353 -----------------------------------------------------ENHLVKVADFGLSRLMTGDTYTAHAGA  379 (495)
T ss_dssp             -----------------------------------------------------GGGCEEECCTTCEECCTTCCEECCTTC
T ss_pred             -----------------------------------------------------CCCcEEEeecccceeccCCceeecCCC
Confidence                                                                 2457999999999655422    1223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..   .               
T Consensus       380 ~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~------~~~~~~~~~~---~---------------  435 (495)
T 1opk_A          380 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEK---D---------------  435 (495)
T ss_dssp             CCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT---T---------------
T ss_pred             cCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc---C---------------
Confidence            44678999999999999999999999999999999 999997652      2222221110   0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             .....+..++..+.+||.+||+.||++|||+.|+++
T Consensus       436 -----------------------~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          436 -----------------------YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             -----------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence                                   011123455678999999999999999999999986

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=2.2e-29  Score=231.47  Aligned_cols=174  Identities=18%  Similarity=0.287  Sum_probs=135.1

Q ss_pred             Cccccc-chhHHHHHHhhc------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSK   67 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~   67 (329)
                      +||||+ |++|.+++....            ...++...+..++.||+.||.|||++ ||+||||||+||+++.      
T Consensus       127 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~------  199 (333)
T 2i1m_A          127 VITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK-NCIHRDVAARNVLLTN------  199 (333)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGCEEEG------
T ss_pred             EEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC-CcccCCcccceEEECC------
Confidence            589999 889999998653            23578999999999999999999995 9999999999999943      


Q ss_pred             CCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccc
Q 020248           68 DPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACR  147 (329)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~  147 (329)
                                                                                        ...++|+|||.+..
T Consensus       200 ------------------------------------------------------------------~~~~kl~Dfg~~~~  213 (333)
T 2i1m_A          200 ------------------------------------------------------------------GHVAKIGDFGLARD  213 (333)
T ss_dssp             ------------------------------------------------------------------GGEEEBCCCGGGCC
T ss_pred             ------------------------------------------------------------------CCeEEECccccccc
Confidence                                                                              35799999999965


Q ss_pred             cccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCc
Q 020248          148 ANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMP  221 (329)
Q Consensus       148 ~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p  221 (329)
                      ....     .....+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ....+..+....-   
T Consensus       214 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~~~~---  284 (333)
T 2i1m_A          214 IMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL------VNSKFYKLVKDGY---  284 (333)
T ss_dssp             GGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------SSHHHHHHHHHTC---
T ss_pred             cccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc------hhHHHHHHHhcCC---
Confidence            4321     122345678999999999999999999999999999998 999997652      1111221111100   


Q ss_pred             HHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          222 RKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                           ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       285 -------------------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  319 (333)
T 2i1m_A          285 -------------------------------------QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS  319 (333)
T ss_dssp             -------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------------------CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                                                 00122334578899999999999999999999987

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.3e-29  Score=235.75  Aligned_cols=173  Identities=20%  Similarity=0.316  Sum_probs=127.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       168 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~-------------------  226 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCMLD-------------------  226 (373)
T ss_dssp             EEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEecCccchheEEEC-------------------
Confidence            589999 889999997643 4588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-------F  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-------~  152 (329)
                                                                           ....++|+|||.+......       .
T Consensus       227 -----------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~  253 (373)
T 3c1x_A          227 -----------------------------------------------------EKFTVKVADFGLARDMYDKEFDSVHNK  253 (373)
T ss_dssp             -----------------------------------------------------TTCCEEECCC-----------------
T ss_pred             -----------------------------------------------------CCCCEEEeecccccccccccccccccc
Confidence                                                                 2457999999998644321       1


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....+|+.|+|||++.+..++.++|||||||++|+|++ |.+||....      ..+....+..  |.            
T Consensus       254 ~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~------~~~~~~~~~~--~~------------  313 (373)
T 3c1x_A          254 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN------TFDITVYLLQ--GR------------  313 (373)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC------SSCHHHHHHT--TC------------
T ss_pred             CCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCC------HHHHHHHHHc--CC------------
Confidence            23345678999999999999999999999999999999 677776542      1111111110  00            


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                 ....+...+..+.+||.+||..||++|||+.|++++
T Consensus       314 ---------------------------~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          314 ---------------------------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             ---------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                       011233446789999999999999999999999874

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=234.74  Aligned_cols=136  Identities=20%  Similarity=0.325  Sum_probs=109.8

Q ss_pred             Cccccc-chhHHHHHHhhc---CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR---YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTP   76 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~---~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~   76 (329)
                      |||||| |++|.+++....   ...+++..+..++.||+.||+|||++ ||+||||||+||+++.......         
T Consensus       144 lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~-~ivHrDiKp~NIll~~~~~~~~---------  213 (365)
T 3e7e_A          144 LVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC-EIIHGDIKPDNFILGNGFLEQD---------  213 (365)
T ss_dssp             EEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCSGGGEEECGGGTCC----------
T ss_pred             EEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeecCCCCHHHEEecccccCcc---------
Confidence            689999 899999998642   24599999999999999999999995 9999999999999954210000         


Q ss_pred             cccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----cc
Q 020248           77 ILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQ  151 (329)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~  151 (329)
                                                                          ........++|+|||.+....     ..
T Consensus       214 ----------------------------------------------------~~~~~~~~~kl~DFG~a~~~~~~~~~~~  241 (365)
T 3e7e_A          214 ----------------------------------------------------DEDDLSAGLALIDLGQSIDMKLFPKGTI  241 (365)
T ss_dssp             ---------------------------------------------------------CTTEEECCCTTCEEGGGSCTTEE
T ss_pred             ----------------------------------------------------ccccccCCEEEeeCchhhhhhccCCCce
Confidence                                                                000224689999999995432     23


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPK  198 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~  198 (329)
                      ....+||+.|+|||++.+..++.++|||||||++|+|++|..||...
T Consensus       242 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          242 FTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             ECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             eeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence            45567899999999999999999999999999999999999999653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.96  E-value=4.7e-29  Score=227.27  Aligned_cols=174  Identities=24%  Similarity=0.358  Sum_probs=131.7

Q ss_pred             Cccccc-chhHHHHHHhhc----CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR----YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLT   75 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~----~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~   75 (329)
                      +||||+ |++|.+++....    ...++...+..++.||+.||.|||++ ||+||||||+||++.               
T Consensus       118 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dikp~NIli~---------------  181 (313)
T 3brb_A          118 VILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR-NFLHRDLAARNCMLR---------------  181 (313)
T ss_dssp             EEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSGGGEEEC---------------
T ss_pred             EEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEc---------------
Confidence            489999 889999996532    24589999999999999999999995 999999999999993               


Q ss_pred             CcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----
Q 020248           76 PILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----  151 (329)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----  151 (329)
                                                                               ....++|+|||.+......    
T Consensus       182 ---------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~  204 (313)
T 3brb_A          182 ---------------------------------------------------------DDMTVCVADFGLSKKIYSGDYYR  204 (313)
T ss_dssp             ---------------------------------------------------------TTSCEEECSCSCC----------
T ss_pred             ---------------------------------------------------------CCCcEEEeecCcceecccccccC
Confidence                                                                     2457999999998654321    


Q ss_pred             -cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          152 -FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       152 -~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                       .....+++.|+|||.+.+..++.++|||||||++|+|++ |..||....      .......+..  +.          
T Consensus       205 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~----------  266 (313)
T 3brb_A          205 QGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ------NHEMYDYLLH--GH----------  266 (313)
T ss_dssp             ------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------GGGHHHHHHT--TC----------
T ss_pred             cccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC------HHHHHHHHHc--CC----------
Confidence             223355778999999999999999999999999999999 899997652      2222221110  00          


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                   ....+...+..+.+||.+||..||++|||+.+++++
T Consensus       267 -----------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          267 -----------------------------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             -----------------------------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                         011223345789999999999999999999999874

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=4.4e-29  Score=225.76  Aligned_cols=172  Identities=20%  Similarity=0.293  Sum_probs=132.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus       104 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~~-~i~H~dikp~Nil~~-------------------  162 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLASK-KFVHRDLAARNCMLD-------------------  162 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-------------------
T ss_pred             EEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchheEEEC-------------------
Confidence            589999 789999997643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QF  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~  152 (329)
                                                                           ....++|+|||.+.....       ..
T Consensus       163 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  189 (298)
T 3f66_A          163 -----------------------------------------------------EKFTVKVADFGLARDMYDKEYYSVHNK  189 (298)
T ss_dssp             -----------------------------------------------------TTCCEEECSCGGGCCCSCGGGCBC---
T ss_pred             -----------------------------------------------------CCCCEEECcccccccccccchhccccc
Confidence                                                                 245799999999965432       12


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ....+|+.|+|||.+.+..++.++|||||||++|+|++ |.+||....      .......+...               
T Consensus       190 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~------~~~~~~~~~~~---------------  248 (298)
T 3f66_A          190 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN------TFDITVYLLQG---------------  248 (298)
T ss_dssp             --CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC------TTTHHHHHHTT---------------
T ss_pred             cCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC------HHHHHHHHhcC---------------
Confidence            23355678999999999999999999999999999999 566665442      11121111110               


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                .....+...+..+.+|+.+||..||++|||+.|+++
T Consensus       249 --------------------------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          249 --------------------------RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             --------------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                      000122334568999999999999999999999986

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.96  E-value=2.4e-29  Score=225.37  Aligned_cols=173  Identities=23%  Similarity=0.380  Sum_probs=136.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.......++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus        84 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dikp~Nil~~-------------------  143 (279)
T 1qpc_A           84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILVS-------------------  143 (279)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CeeccCCCHhhEEEc-------------------
Confidence            589999 89999999865433589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       144 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  170 (279)
T 1qpc_A          144 -----------------------------------------------------DTLSCKIADFGLARLIEDNEYTAREGA  170 (279)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             -----------------------------------------------------CCCCEEECCCcccccccCcccccccCC
Confidence                                                                 2457999999999655432    1223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++.+..++.++|||||||++|+|++ |..||.+.      .....+..+...  .               
T Consensus       171 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~------~~~~~~~~~~~~--~---------------  227 (279)
T 1qpc_A          171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM------TNPEVIQNLERG--Y---------------  227 (279)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC------CHHHHHHHHHTT--C---------------
T ss_pred             CCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc------CHHHHHHHHhcc--c---------------
Confidence            45678999999998889999999999999999999 99999765      222222222110  0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+|+.+||..||++|||+.++++
T Consensus       228 ------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          228 ------------------------RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------------CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                                    00112334678999999999999999999999986

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=7.6e-30  Score=231.08  Aligned_cols=185  Identities=23%  Similarity=0.391  Sum_probs=139.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||+|||++ ||+||||||+||+++.                  
T Consensus       102 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nil~~~------------------  161 (302)
T 4e5w_A          102 LIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSR-QYVHRDLAARNVLVES------------------  161 (302)
T ss_dssp             EEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcC-CcccCCCchheEEEcC------------------
Confidence            589999 889999996653 4589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       162 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  187 (302)
T 4e5w_A          162 ------------------------------------------------------EHQVKIGDFGLTKAIETDKEYYTVKD  187 (302)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCTTCCEEECCC
T ss_pred             ------------------------------------------------------CCCEEECcccccccccCCCcceeccC
Confidence                                                                  357999999999655422      23


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...+|..|+|||++.+..++.++|||||||++|+|++|..|+...           ...+....++.......       
T Consensus       188 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----------~~~~~~~~~~~~~~~~~-------  249 (302)
T 4e5w_A          188 DRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSP-----------MALFLKMIGPTHGQMTV-------  249 (302)
T ss_dssp             CTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH-----------HHHHHHHHCSCCGGGHH-------
T ss_pred             CCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcch-----------hhHHhhccCCcccccCH-------
Confidence            345677899999999999999999999999999999999887532           12222333332211100       


Q ss_pred             ccCccCchhhhccccccchhHHHh--hhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                      ........  .....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       250 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          250 ----------------TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             ----------------HHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             ----------------HHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence                            00000111  112234556788999999999999999999999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=8.6e-29  Score=223.54  Aligned_cols=173  Identities=20%  Similarity=0.291  Sum_probs=133.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.|++.||.|||++ |++||||||+||+++                   
T Consensus       100 ~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nili~-------------------  158 (298)
T 3pls_A          100 VLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAEQ-KFVHRDLAARNCMLD-------------------  158 (298)
T ss_dssp             EEECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-------------------
T ss_pred             EEEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCcceEEEc-------------------
Confidence            479999 899999997643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QF  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~  152 (329)
                                                                           ....++|+|||.+.....       ..
T Consensus       159 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  185 (298)
T 3pls_A          159 -----------------------------------------------------ESFTVKVADFGLARDILDREYYSVQQH  185 (298)
T ss_dssp             -----------------------------------------------------TTCCEEECCTTSSCTTTTGGGGCSCCS
T ss_pred             -----------------------------------------------------CCCcEEeCcCCCcccccCCcccccccC
Confidence                                                                 245799999999854332       22


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....+++.|+|||.+.+..++.++|||||||++|+|++|..||....     +.......+... .              
T Consensus       186 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-----~~~~~~~~~~~~-~--------------  245 (298)
T 3pls_A          186 RHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-----DPFDLTHFLAQG-R--------------  245 (298)
T ss_dssp             SCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CGGGHHHHHHTT-C--------------
T ss_pred             cCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-----CHHHHHHHhhcC-C--------------
Confidence            33456788999999999999999999999999999999655544331     122222211110 0              


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       246 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          246 --------------------------RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                      01123334678999999999999999999999976

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.96  E-value=3.6e-29  Score=225.87  Aligned_cols=171  Identities=21%  Similarity=0.355  Sum_probs=134.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||++ |++||||||+||++..                  
T Consensus        94 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dikp~Nil~~~------------------  152 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT------------------  152 (291)
T ss_dssp             EEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHHHhC-CeEcCCCCcceEEEeC------------------
Confidence            589999 89999999875  3499999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       153 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  178 (291)
T 1xbb_A          153 ------------------------------------------------------QHYAKISDFGLSKALRADENYYKAQT  178 (291)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCTTCSEEEC--
T ss_pred             ------------------------------------------------------CCcEEEccCCcceeeccCCCcccccc
Confidence                                                                  357999999998655421      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+++.|+|||++.+..++.++|||||||++|+|++ |..||....      .......+..  +.             
T Consensus       179 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~~-------------  237 (291)
T 1xbb_A          179 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--GE-------------  237 (291)
T ss_dssp             --CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--TC-------------
T ss_pred             cCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CC-------------
Confidence            2345678999999999889999999999999999999 999997652      2222221110  00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       238 --------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          238 --------------------------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             --------------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                                      01123345678999999999999999999999976

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.96  E-value=4.7e-29  Score=229.70  Aligned_cols=174  Identities=22%  Similarity=0.373  Sum_probs=136.7

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||+ |++|.+++.....              ..++...+..++.||+.||.|||++ ||+||||||+||+++     
T Consensus       118 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-----  191 (334)
T 2pvf_A          118 VIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ-KCIHRDLAARNVLVT-----  191 (334)
T ss_dssp             EEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-----
T ss_pred             EEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCccceEEEc-----
Confidence            589999 8899999987532              2488999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       192 -------------------------------------------------------------------~~~~~kL~Dfg~~  204 (334)
T 2pvf_A          192 -------------------------------------------------------------------ENNVMKIADFGLA  204 (334)
T ss_dssp             -------------------------------------------------------------------TTCCEEECCCTTC
T ss_pred             -------------------------------------------------------------------CCCCEEEcccccc
Confidence                                                                               2457999999998


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+...  .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~--~  276 (334)
T 2pvf_A          205 RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLKEG--H  276 (334)
T ss_dssp             EECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHHT--C
T ss_pred             ccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC------HHHHHHHHhcC--C
Confidence            65443     1233455778999999999999999999999999999999 999997652      22222222110  0


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+...+..+.+||++||..||++|||+.|++++
T Consensus       277 ---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          277 ---------------------------------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------------------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                                   011233446789999999999999999999999874

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=6.7e-29  Score=228.85  Aligned_cols=173  Identities=18%  Similarity=0.354  Sum_probs=131.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       123 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIl~~-------------------  181 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILVN-------------------  181 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCChheEEEC-------------------
Confidence            589999 889999998643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                           ....++|+|||.+......      ..
T Consensus       182 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  208 (333)
T 1mqb_A          182 -----------------------------------------------------SNLVCKVSDFGLSRVLEDDPEATYTTS  208 (333)
T ss_dssp             -----------------------------------------------------TTCCEEECCCCC---------------
T ss_pred             -----------------------------------------------------CCCcEEECCCCcchhhccccccccccC
Confidence                                                                 2457999999999655421      11


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |..||...      ........+..  +.             
T Consensus       209 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~------~~~~~~~~~~~--~~-------------  267 (333)
T 1mqb_A          209 GGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL------SNHEVMKAIND--GF-------------  267 (333)
T ss_dssp             --CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHT--TC-------------
T ss_pred             CCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC------CHHHHHHHHHC--CC-------------
Confidence            2234678999999999999999999999999999998 99999765      22222222211  00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                ....+...+..+.+||.+||+.||++|||+.|++++
T Consensus       268 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          268 --------------------------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             --------------------------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             --------------------------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                      011223346788999999999999999999999874

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.96  E-value=5e-29  Score=244.10  Aligned_cols=180  Identities=25%  Similarity=0.414  Sum_probs=142.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++.                  
T Consensus       338 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~-~ivHrDlkp~NIll~~------------------  398 (535)
T 2h8h_A          338 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVGE------------------  398 (535)
T ss_dssp             EEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECG------------------
T ss_pred             EeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCCCHhhEEEcC------------------
Confidence            589999 88999999865445689999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||++......    ....
T Consensus       399 ------------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~~  424 (535)
T 2h8h_A          399 ------------------------------------------------------NLVCKVADFGLARLIEDNEYTARQGA  424 (535)
T ss_dssp             ------------------------------------------------------GGCEEECCTTSTTTCCCHHHHTTCST
T ss_pred             ------------------------------------------------------CCcEEEcccccceecCCCceecccCC
Confidence                                                                  457999999999655421    1223


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .++..|+|||++.+..++.++|||||||++|+|++ |..||.+.      ...+.+..+..  |.               
T Consensus       425 ~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~------~~~~~~~~i~~--~~---------------  481 (535)
T 2h8h_A          425 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM------VNREVLDQVER--GY---------------  481 (535)
T ss_dssp             TSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC------CHHHHHHHHHT--TC---------------
T ss_pred             cCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--CC---------------
Confidence            45678999999999999999999999999999999 99999765      22333222211  00               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC--CCcCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH--PWLSLR  300 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h--pwf~~~  300 (329)
                                              ....+..++..+.+||.+||+.||++|||+.+|++.  .+|...
T Consensus       482 ------------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~  525 (535)
T 2h8h_A          482 ------------------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  525 (535)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence                                    011234456789999999999999999999999874  666544

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=5.1e-29  Score=233.43  Aligned_cols=172  Identities=20%  Similarity=0.351  Sum_probs=126.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       123 lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~-------------------  181 (373)
T 2qol_A          123 IVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDM-GYVHRDLAARNILIN-------------------  181 (373)
T ss_dssp             EEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC-CeeCCCCCcceEEEc-------------------
Confidence            589999 899999998643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc------c
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF------A  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~------~  153 (329)
                                                                           ....++|+|||.+.......      .
T Consensus       182 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  208 (373)
T 2qol_A          182 -----------------------------------------------------SNLVCKVSDFGLGRVLEDDPEAAYTTR  208 (373)
T ss_dssp             -----------------------------------------------------TTCCEEECCC-----------------
T ss_pred             -----------------------------------------------------CCCCEEECcCccccccccCCccceecc
Confidence                                                                 34579999999986544221      1


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |..||...      ........+....               
T Consensus       209 ~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~------~~~~~~~~i~~~~---------------  267 (373)
T 2qol_A          209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM------SNQDVIKAVDEGY---------------  267 (373)
T ss_dssp             -----CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC------CHHHHHHHHHTTE---------------
T ss_pred             CCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHcCC---------------
Confidence            1234668999999999999999999999999999997 99999765      2222222221100               


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ..+.+..++..+.+||.+||+.||++|||+.|+++
T Consensus       268 --------------------------~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          268 --------------------------RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             --------------------------ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence                                      01122344678999999999999999999999876

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.2e-29  Score=231.05  Aligned_cols=172  Identities=23%  Similarity=0.331  Sum_probs=118.5

Q ss_pred             CcccccchhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFLGDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~-~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||++++|.+++.... ...++...+..++.||+.||.|||++ |  |+||||||+||++.                 
T Consensus       111 lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~~~ivH~Dikp~NIl~~-----------------  172 (337)
T 3ll6_A          111 LLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLS-----------------  172 (337)
T ss_dssp             EEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS-SSCCBCCCCCGGGCEEC-----------------
T ss_pred             EEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC-CCCEEEccCCcccEEEC-----------------
Confidence            589999889999887632 24599999999999999999999995 9  99999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccccc-----
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQF-----  152 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~-----  152 (329)
                                                                             ....++|+|||.+.......     
T Consensus       173 -------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~  197 (337)
T 3ll6_A          173 -------------------------------------------------------NQGTIKLCDFGSATTISHYPDYSWS  197 (337)
T ss_dssp             -------------------------------------------------------TTSCEEBCCCTTCBCCSSCC-----
T ss_pred             -------------------------------------------------------CCCCEEEecCccceeccccCccccc
Confidence                                                                   24579999999986554311     


Q ss_pred             ----------ccCCCCCCCcchHHh---hcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          153 ----------AEEIQTRQYRAPEVI---LRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       153 ----------~~~~~~~~y~aPE~~---~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                                ....+++.|+|||++   .+..++.++|||||||++|+|++|..||.....      ...   +....  
T Consensus       198 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~------~~~---~~~~~--  266 (337)
T 3ll6_A          198 AQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK------LRI---VNGKY--  266 (337)
T ss_dssp             --------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------------------C--
T ss_pred             ccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH------HHh---hcCcc--
Confidence                      134578899999998   466789999999999999999999999965421      000   00000  


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHP  295 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hp  295 (329)
                                                             ........+..+.+||++||+.||++|||+.|+++|-
T Consensus       267 ---------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          267 ---------------------------------------SIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             ---------------------------------------CCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             ---------------------------------------cCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                                                   0001112234578999999999999999999999874

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.96  E-value=6.5e-30  Score=234.64  Aligned_cols=186  Identities=25%  Similarity=0.326  Sum_probs=137.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++..                  
T Consensus       103 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~ivH~Dikp~NIl~~~------------------  162 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSR-RCVHRDLAARNILVES------------------  162 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE------------------
T ss_pred             EEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCChhhEEECC------------------
Confidence            589999 999999998753 3489999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||.+.....      ...
T Consensus       163 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  188 (327)
T 3lxl_A          163 ------------------------------------------------------EAHVKIADFGLAKLLPLDKDYYVVRE  188 (327)
T ss_dssp             ------------------------------------------------------TTEEEECCGGGCEECCTTCSEEECSS
T ss_pred             ------------------------------------------------------CCCEEEcccccceecccCCccceeec
Confidence                                                                  45799999999965432      223


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++|..||....       ......+ ...+..+.           
T Consensus       189 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~-------~~~~~~~-~~~~~~~~-----------  249 (327)
T 3lxl_A          189 PGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPS-------AEFLRMM-GCERDVPA-----------  249 (327)
T ss_dssp             CCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH-------HHHHHHC-C----CCH-----------
T ss_pred             cCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCcccc-------chhhhhc-cccccccc-----------
Confidence            3456778999999999999999999999999999999999997531       1110000 00000000           


Q ss_pred             ccCccCchhhhccccccchhHHHh--hhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLV--DKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                             ..        .......  .....+...+..+.+||.+||+.||++|||+.|++++
T Consensus       250 -------~~--------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          250 -------LS--------RLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             -------HH--------HHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------HH--------HHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                   00        0000001  1112345567889999999999999999999999654

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.96  E-value=7.1e-29  Score=225.36  Aligned_cols=186  Identities=23%  Similarity=0.294  Sum_probs=137.2

Q ss_pred             Cccccc-chhHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSR-YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~-~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +||||+ |++|.+++.... ...++...+..++.||+.||.|||++ |++||||||+||+++                  
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-~i~H~dlkp~Nili~------------------  167 (307)
T 2nru_A          107 LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN-HHIHRDIKSANILLD------------------  167 (307)
T ss_dssp             EEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC------------------
T ss_pred             EEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC-CeecCCCCHHHEEEc------------------
Confidence            589999 899999998543 24589999999999999999999995 999999999999993                  


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc-----cc
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ-----FA  153 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~-----~~  153 (329)
                                                                            ....++|+|||.+......     ..
T Consensus       168 ------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~  193 (307)
T 2nru_A          168 ------------------------------------------------------EAFTAKISDFGLARASEKFAQTVMTS  193 (307)
T ss_dssp             ------------------------------------------------------TTCCEEECCCTTCEECCSCSSCEECS
T ss_pred             ------------------------------------------------------CCCcEEEeeccccccccccccccccc
Confidence                                                                  2457999999998654321     23


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...|++.|+|||++.+ .++.++|||||||++|+|++|..||......      ..+..+.+.......           
T Consensus       194 ~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~~~~~~~~-----------  255 (307)
T 2nru_A          194 RIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP------QLLLDIKEEIEDEEK-----------  255 (307)
T ss_dssp             SCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS------SBTTHHHHHHHTTSC-----------
T ss_pred             ccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch------HHHHHHHHHhhhhhh-----------
Confidence            3468899999998865 4889999999999999999999999765311      111111111100000           


Q ss_pred             ccCccCchhhhccccccchhHHHhh-hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVD-KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                       .....+.. ....+...+..+.+|+.+||+.||++|||+.|++++
T Consensus       256 -----------------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          256 -----------------TIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             -----------------CHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -----------------hhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                             00011000 112345567889999999999999999999999864

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.96  E-value=5.8e-29  Score=248.10  Aligned_cols=171  Identities=21%  Similarity=0.360  Sum_probs=135.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..++...+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus       446 lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~yLH~~-~iiHrDLkp~NILl~~------------------  504 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT------------------  504 (635)
T ss_dssp             EEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHC-CEeCCCCChHhEEEeC------------------
Confidence            589999 89999999765  4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||++......      ..
T Consensus       505 ------------------------------------------------------~~~~kL~DFGla~~~~~~~~~~~~~~  530 (635)
T 4fl3_A          505 ------------------------------------------------------QHYAKISDFGLSKALRADENYYKAQT  530 (635)
T ss_dssp             ------------------------------------------------------TTEEEECCTTHHHHTTC---------
T ss_pred             ------------------------------------------------------CCCEEEEEcCCccccccCcccccccc
Confidence                                                                  457999999998654321      22


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.      ........+..  |              
T Consensus       531 ~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~------~~~~~~~~i~~--~--------------  588 (635)
T 4fl3_A          531 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM------KGSEVTAMLEK--G--------------  588 (635)
T ss_dssp             ----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC------CHHHHHHHHHT--T--------------
T ss_pred             CCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--C--------------
Confidence            2345678999999999999999999999999999998 99999876      22222222211  0              


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               .....+..++..+.+||.+||+.||++|||+++|++
T Consensus       589 -------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          589 -------------------------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             -------------------------CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -------------------------CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                     011133455778999999999999999999999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=245.50  Aligned_cols=172  Identities=22%  Similarity=0.379  Sum_probs=135.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..++...+..++.||+.||+|||++ ||+||||||+||+++.                  
T Consensus       412 lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~-~iiHrDlkp~NILl~~------------------  471 (613)
T 2ozo_A          412 LVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEK-NFVHRNLAARNVLLVN------------------  471 (613)
T ss_dssp             EEEECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CEEcCcCCHHHEEEcC------------------
Confidence            589999 889999997542 4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||++......      ..
T Consensus       472 ------------------------------------------------------~~~vkL~DFGla~~~~~~~~~~~~~~  497 (613)
T 2ozo_A          472 ------------------------------------------------------RHYAKISDFGLSKALGADDSYYTARS  497 (613)
T ss_dssp             ------------------------------------------------------TTEEEECCCSTTTTCC----------
T ss_pred             ------------------------------------------------------CCcEEEeeccCcccccCCCceeeecc
Confidence                                                                  457999999999654321      11


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+++.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  |              
T Consensus       498 ~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~--------------  555 (613)
T 2ozo_A          498 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--G--------------  555 (613)
T ss_dssp             ----CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------SHHHHHHHHT--T--------------
T ss_pred             CCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--C--------------
Confidence            2234678999999999999999999999999999998 999998762      3333322211  0              


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               .....+..++..+.+||.+||..||++|||+.++++
T Consensus       556 -------------------------~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  591 (613)
T 2ozo_A          556 -------------------------KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQ  591 (613)
T ss_dssp             -------------------------CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHH
T ss_pred             -------------------------CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                     011234456788999999999999999999999854

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=4e-29  Score=224.97  Aligned_cols=173  Identities=24%  Similarity=0.331  Sum_probs=134.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +|||++ |++|.+++.... ..++...+..++.||+.||.|||++ |++|+||||+||++..                  
T Consensus        97 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~-~i~H~dikp~Nili~~------------------  156 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAARNLLLAT------------------  156 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEEE------------------
T ss_pred             eeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhC-CcccCCCchheEEEcC------------------
Confidence            589999 899999998753 3489999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       157 ------------------------------------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~  182 (291)
T 1u46_A          157 ------------------------------------------------------RDLVKIGDFGLMRALPQNDDHYVMQE  182 (291)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCC-CCEEEC--
T ss_pred             ------------------------------------------------------CCCEEEccccccccccccccchhhhc
Confidence                                                                  347999999998655421      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |..||...      +....+..+... +.             
T Consensus       183 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~------~~~~~~~~~~~~-~~-------------  242 (291)
T 1u46_A          183 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL------NGSQILHKIDKE-GE-------------  242 (291)
T ss_dssp             ---CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHTS-CC-------------
T ss_pred             cCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC------CHHHHHHHHHcc-CC-------------
Confidence            3355778999999999889999999999999999999 99999765      222222222110 00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ....+...+..+.+||.+||..||++|||+.++++
T Consensus       243 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  277 (291)
T 1u46_A          243 --------------------------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  277 (291)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                                      00112334678999999999999999999999987

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.95  E-value=6.9e-29  Score=227.16  Aligned_cols=183  Identities=25%  Similarity=0.345  Sum_probs=135.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...   .++...+..++.||+.||.|||++ ||+||||||+||+++                   
T Consensus       112 lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~-~ivH~Dikp~Nil~~-------------------  168 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQ-HYIHRDLAARNVLLD-------------------  168 (318)
T ss_dssp             EEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhC-CccCCCCchheEEEc-------------------
Confidence            589999 88999999764   389999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                           ....++|+|||.+......      ..
T Consensus       169 -----------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~  195 (318)
T 3lxp_A          169 -----------------------------------------------------NDRLVKIGDFGLAKAVPEGHEYYRVRE  195 (318)
T ss_dssp             -----------------------------------------------------TTCCEEECCGGGCEECCTTCSEEEC--
T ss_pred             -----------------------------------------------------CCCCEEECCcccccccccccccccccc
Confidence                                                                 2457999999999655431      23


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++|..||....       .    ......+.......        
T Consensus       196 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~-------~----~~~~~~~~~~~~~~--------  256 (318)
T 3lxp_A          196 DGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPP-------T----KFLELIGIAQGQMT--------  256 (318)
T ss_dssp             -CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH-------H----HHHHHHCSCCHHHH--------
T ss_pred             CCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccc-------h----hhhhhhcccccchh--------
Confidence            3456778999999999999999999999999999999999996531       0    01111111000000        


Q ss_pred             ccCccCchhhhccccccchhHHHhh--hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                     .....+....  ....+...+..+.+||++||+.||++|||+.|+++
T Consensus       257 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          257 ---------------VLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             ---------------HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------HHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                           0000111111  11234556789999999999999999999999985

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=7.5e-29  Score=228.43  Aligned_cols=182  Identities=20%  Similarity=0.270  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH--------hhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH--------RELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH--------~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||+ |++|.+++...   .++...+..++.|++.||.|||        + .||+||||||+||++.           
T Consensus       117 lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~-~~ivH~Dlkp~NIll~-----------  181 (342)
T 1b6c_B          117 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGK-PAIAHRDLKSKNILVK-----------  181 (342)
T ss_dssp             EEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCB-CEEECSCCSGGGEEEC-----------
T ss_pred             EEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCeeeCCCCHHHEEEC-----------
Confidence            589999 78999999764   4899999999999999999999        7 4999999999999993           


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ  151 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~  151 (329)
                                                                                   ....++|+|||.+......
T Consensus       182 -------------------------------------------------------------~~~~~kL~Dfg~~~~~~~~  200 (342)
T 1b6c_B          182 -------------------------------------------------------------KNGTCCIADLGLAVRHDSA  200 (342)
T ss_dssp             -------------------------------------------------------------TTSCEEECCCTTCEEEETT
T ss_pred             -------------------------------------------------------------CCCCEEEEECCCceecccc
Confidence                                                                         2457999999998654432


Q ss_pred             -------cccCCCCCCCcchHHhhcCC------CCccchHHHHHHHHHHHHhC----------CcCCCCCCCCCCCCchH
Q 020248          152 -------FAEEIQTRQYRAPEVILRAG------YSFSVDMWSFACTAFELATG----------DMLFAPKSGQGFCEDED  208 (329)
Q Consensus       152 -------~~~~~~~~~y~aPE~~~~~~------~s~~~DiwslG~il~~l~~g----------~~pf~~~~~~~~~~~~~  208 (329)
                             .....|++.|+|||++.+..      ++.++|||||||++|+|++|          ..||.......  ....
T Consensus       201 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~--~~~~  278 (342)
T 1b6c_B          201 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD--PSVE  278 (342)
T ss_dssp             TTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS--CCHH
T ss_pred             ccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCc--ccHH
Confidence                   23457899999999998752      34789999999999999999          66765442110  0111


Q ss_pred             HHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCH
Q 020248          209 HLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA  288 (329)
Q Consensus       209 ~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta  288 (329)
                      .+...... +....                 ..          ....      .+......+.+||.+||+.||++|||+
T Consensus       279 ~~~~~~~~-~~~~~-----------------~~----------~~~~------~~~~~~~~l~~li~~cl~~dp~~Rps~  324 (342)
T 1b6c_B          279 EMRKVVCE-QKLRP-----------------NI----------PNRW------QSCEALRVMAKIMRECWYANGAARLTA  324 (342)
T ss_dssp             HHHHHHTT-SCCCC-----------------CC----------CGGG------GTSHHHHHHHHHHHHHCCSSGGGSCCH
T ss_pred             HHHHHHHH-HHhCC-----------------CC----------cccc------cchhHHHHHHHHHHHHhccChhhCCCH
Confidence            11111100 00000                 00          0000      123456789999999999999999999


Q ss_pred             HHHhcC
Q 020248          289 QQCLQH  294 (329)
Q Consensus       289 ~ell~h  294 (329)
                      .|+++|
T Consensus       325 ~~i~~~  330 (342)
T 1b6c_B          325 LRIKKT  330 (342)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=2.5e-28  Score=222.57  Aligned_cols=173  Identities=23%  Similarity=0.364  Sum_probs=125.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...  ..++...+..++.||+.||.|||+. ||+||||||+||++.                   
T Consensus       111 lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~lH~~-~i~H~dlkp~NIl~~-------------------  168 (309)
T 2h34_A          111 VDMRLINGVDLAAMLRRQ--GPLAPPRAVAIVRQIGSALDAAHAA-GATHRDVKPENILVS-------------------  168 (309)
T ss_dssp             EEEECCCCEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-cCCcCCCChHHEEEc-------------------
Confidence            589999 88999999876  3599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....++|+|||.+......    ....
T Consensus       169 -----------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~  195 (309)
T 2h34_A          169 -----------------------------------------------------ADDFAYLVDFGIASATTDEKLTQLGNT  195 (309)
T ss_dssp             -----------------------------------------------------TTSCEEECSCCC---------------
T ss_pred             -----------------------------------------------------CCCCEEEecCccCcccccccccccccc
Confidence                                                                 2457999999998654432    2344


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++|..||...       ....+.....  ...+.             
T Consensus       196 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~~~--~~~~~-------------  253 (309)
T 2h34_A          196 VGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD-------QLSVMGAHIN--QAIPR-------------  253 (309)
T ss_dssp             -CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC-------HHHHHHHHHH--SCCCC-------------
T ss_pred             CCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc-------hHHHHHHHhc--cCCCC-------------
Confidence            6788999999999989999999999999999999999999764       2222211111  11000             


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-CHHHHhc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-TAQQCLQ  293 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-ta~ell~  293 (329)
                                             ....+...+..+.+||.+||..||++|| |+.++++
T Consensus       254 -----------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          254 -----------------------PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             -----------------------GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             -----------------------ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence                                   0001233456889999999999999999 7777765

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.95  E-value=3.8e-28  Score=220.97  Aligned_cols=176  Identities=24%  Similarity=0.373  Sum_probs=126.3

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.||+.||.|||++ |++||||||+||++.                 
T Consensus       109 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~i~H~dl~p~NIl~~-----------------  170 (310)
T 2wqm_A          109 IVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR-RVMHRDIKPANVFIT-----------------  170 (310)
T ss_dssp             EEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-----------------
T ss_pred             EEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC-CeeCCCCcHHHEEEc-----------------
Confidence            589999 789999987632  34589999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc---ccc
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ---FAE  154 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~---~~~  154 (329)
                                                                             ....++|+|||.+......   ...
T Consensus       171 -------------------------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~  195 (310)
T 2wqm_A          171 -------------------------------------------------------ATGVVKLGDLGLGRFFSSKTTAAHS  195 (310)
T ss_dssp             -------------------------------------------------------TTSCEEECCC---------------
T ss_pred             -------------------------------------------------------CCCCEEEEeccceeeecCCCccccc
Confidence                                                                   2457999999998654432   233


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      ..+++.|+|||++.+..++.++|||||||++|+|++|..||.+..     .....+...... +..|             
T Consensus       196 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~-~~~~-------------  256 (310)
T 2wqm_A          196 LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK-----MNLYSLCKKIEQ-CDYP-------------  256 (310)
T ss_dssp             ---CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--------CCHHHHHHHHHT-TCSC-------------
T ss_pred             cCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc-----hhHHHHHHHhhc-ccCC-------------
Confidence            467889999999999999999999999999999999999997542     111111111100 0000             


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                               .......+..+.+||.+||..||++|||+.++++
T Consensus       257 -------------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~  290 (310)
T 2wqm_A          257 -------------------------PLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYD  290 (310)
T ss_dssp             -------------------------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------------------CCcccccCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                                     0011234568999999999999999999999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.95  E-value=3.8e-28  Score=221.58  Aligned_cols=172  Identities=24%  Similarity=0.401  Sum_probs=130.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ |++||||||+||++.                   
T Consensus       106 iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~i~H~dlkp~NIl~~-------------------  164 (319)
T 2y4i_B          106 IITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHAK-GILHKDLKSKNVFYD-------------------  164 (319)
T ss_dssp             EECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHHT-TCCCCCCCSTTEEEC-------------------
T ss_pred             EEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCChhhEEEe-------------------
Confidence            589999 899999997643 4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--------KQ  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--------~~  151 (329)
                                                                            ...++|+|||.+....        ..
T Consensus       165 ------------------------------------------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~  190 (319)
T 2y4i_B          165 ------------------------------------------------------NGKVVITDFGLFSISGVLQAGRREDK  190 (319)
T ss_dssp             --------------------------------------------------------CCEECCCSCCC----------CCS
T ss_pred             ------------------------------------------------------CCCEEEeecCCccccccccccccccc
Confidence                                                                  2368999999874432        12


Q ss_pred             cccCCCCCCCcchHHhhc---------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          152 FAEEIQTRQYRAPEVILR---------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~---------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      .....|++.|+|||++.+         ..++.++|||||||++|+|++|..||....      .......+..  +..|.
T Consensus       191 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~--~~~~~  262 (319)
T 2y4i_B          191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP------AEAIIWQMGT--GMKPN  262 (319)
T ss_dssp             CBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC------HHHHHHHHHT--TCCCC
T ss_pred             cccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHhcc--CCCCC
Confidence            233457889999999975         357899999999999999999999997652      2222222211  00000


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                            ......+..+.+||.+||..||++|||+.++++
T Consensus       263 --------------------------------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          263 --------------------------------------LSQIGMGKEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             --------------------------------------CCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             --------------------------------------CCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                                                  001123457889999999999999999999987

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.95  E-value=6.5e-28  Score=241.38  Aligned_cols=172  Identities=18%  Similarity=0.310  Sum_probs=135.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus       467 lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-givHrDikp~NILl~~------------------  526 (656)
T 2j0j_A          467 IIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS------------------  526 (656)
T ss_dssp             EEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC-CccccccchHhEEEeC------------------
Confidence            589999 899999998653 3589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                            ...++|+|||.+......    ....
T Consensus       527 ------------------------------------------------------~~~vkL~DFG~a~~~~~~~~~~~~~~  552 (656)
T 2j0j_A          527 ------------------------------------------------------NDCVKLGDFGLSRYMEDSTYYKASKG  552 (656)
T ss_dssp             ------------------------------------------------------TTEEEECCCCCCCSCCC---------
T ss_pred             ------------------------------------------------------CCCEEEEecCCCeecCCCcceeccCC
Confidence                                                                  357999999999655432    1233


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+++.|+|||++.+..++.++|||||||++|+|++ |..||.+.      ...+.+..+...  .               
T Consensus       553 ~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~------~~~~~~~~i~~~--~---------------  609 (656)
T 2j0j_A          553 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV------KNNDVIGRIENG--E---------------  609 (656)
T ss_dssp             -CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHHT--C---------------
T ss_pred             CCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC------CHHHHHHHHHcC--C---------------
Confidence            55678999999999999999999999999999997 99999765      233333333210  0               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ....+...+..+.+||.+||..||++|||+.|+++
T Consensus       610 ------------------------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          610 ------------------------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------------------------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                    01123345678999999999999999999999975

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.95  E-value=1.1e-28  Score=225.12  Aligned_cols=176  Identities=24%  Similarity=0.370  Sum_probs=132.3

Q ss_pred             Cccccc-chhHHHHHHhhc--CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      +||||+ |++|.+++....  ...++...+..++.||+.||.|||++ ||+||||||+||++.                 
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~-~ivH~dlkp~NIl~~-----------------  168 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK-GYAHRDLKPTNILLG-----------------  168 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC-----------------
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCCHHHEEEc-----------------
Confidence            589999 789999998742  24589999999999999999999995 999999999999993                 


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------  151 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------  151 (329)
                                                                             ....++|+|||.+......      
T Consensus       169 -------------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~  193 (317)
T 2buj_A          169 -------------------------------------------------------DEGQPVLMDLGSMNQACIHVEGSRQ  193 (317)
T ss_dssp             -------------------------------------------------------TTSCEEECCCSSCEESCEEEESHHH
T ss_pred             -------------------------------------------------------CCCCEEEEecCcchhcccccccccc
Confidence                                                                   3457999999987544321      


Q ss_pred             ------cccCCCCCCCcchHHhhcCC---CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          152 ------FAEEIQTRQYRAPEVILRAG---YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       152 ------~~~~~~~~~y~aPE~~~~~~---~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                            .....|++.|+|||++.+..   ++.++|||||||++|+|++|..||......     ...+.....  ..   
T Consensus       194 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~--~~---  263 (317)
T 2buj_A          194 ALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK-----GDSVALAVQ--NQ---  263 (317)
T ss_dssp             HHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHT-----TSCHHHHHH--CC---
T ss_pred             cccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcc-----cchhhHHhh--cc---
Confidence                  12234688999999987654   789999999999999999999999542100     000000000  00   


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                         ...+.....+..+.+||.+||+.||.+|||+.|++++
T Consensus       264 -----------------------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          264 -----------------------------------LSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             -------------------------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------------CCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence                                               0001122345789999999999999999999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.95  E-value=5.3e-28  Score=221.93  Aligned_cols=185  Identities=23%  Similarity=0.336  Sum_probs=137.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++.... ..++...+..++.||+.||.|||++ ||+||||||+||++..                  
T Consensus       121 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~dikp~NIli~~------------------  180 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTK-RYIHRDLATRNILVEN------------------  180 (326)
T ss_dssp             EEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEEE------------------
T ss_pred             EEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC-CEeccCCCcceEEEcC------------------
Confidence            589999 889999998753 3589999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       181 ------------------------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~  206 (326)
T 2w1i_A          181 ------------------------------------------------------ENRVKIGDFGLTKVLPQDKEYYKVKE  206 (326)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCSSCSEEECSS
T ss_pred             ------------------------------------------------------CCcEEEecCcchhhcccccccccccc
Confidence                                                                  357999999999655432      12


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH-HHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR-KIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~-~~~~~~~~~~  232 (329)
                      ...++..|+|||++.+..++.++|||||||++|+|++|..||....           ....+..+..+. .+.       
T Consensus       207 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~-----------~~~~~~~~~~~~~~~~-------  268 (326)
T 2w1i_A          207 PGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQMI-------  268 (326)
T ss_dssp             CCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHH-----------HHHHHHHCTTCCTHHH-------
T ss_pred             CCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCH-----------HHHHHhhccccchhhh-------
Confidence            2345678999999999999999999999999999999999886430           111111221110 000       


Q ss_pred             cccCccCchhhhccccccchhHHHhh--hcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVD--KYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                      .....+.+..  ..+.+...+..+.+||++||..||++|||+.|+++
T Consensus       269 ----------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          269 ----------------VFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             ----------------HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ----------------HHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                            0000011111  11234456788999999999999999999999975

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.94  E-value=5.3e-28  Score=222.86  Aligned_cols=193  Identities=16%  Similarity=0.147  Sum_probs=127.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH-hhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH-~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      |||||| |+++.+.+..   ..+++..++.++.||+.||.||| +. ||+||||||+|||+..........         
T Consensus       139 lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~-~ivHrDlKp~NILl~~~~~~~~~~---------  205 (336)
T 2vuw_A          139 IVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASLAVAEASL-RFEHRDLHWGNVLLKKTSLKKLHY---------  205 (336)
T ss_dssp             EEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHHHHHHHHH-CCBCSCCCGGGEEEEECSCSEEEE---------
T ss_pred             EEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHhC-CEeECCCCHHHEEEeccCCcceee---------
Confidence            589999 7755544433   34899999999999999999999 86 999999999999995431000000         


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT  158 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~  158 (329)
                                                           ...+.      ..........++|+|||.+......  ..+||
T Consensus       206 -------------------------------------~~~~~------~~~~~~~~~~vkL~DFG~a~~~~~~--~~~gt  240 (336)
T 2vuw_A          206 -------------------------------------TLNGK------SSTIPSCGLQVSIIDYTLSRLERDG--IVVFC  240 (336)
T ss_dssp             -------------------------------------EETTE------EEEEECTTEEEEECCCTTCBEEETT--EEECC
T ss_pred             -------------------------------------eccCc------cccccCCCceEEEeeccccEecCCC--cEEEe
Confidence                                                 00000      0000011237999999999765543  34789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHH-HHHHHhCCcCCCCCCCCCCCCc-hHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACT-AFELATGDMLFAPKSGQGFCED-EDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~i-l~~l~~g~~pf~~~~~~~~~~~-~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      +.|+|||++.+.. +.++||||++++ .++++.|..||....      . ......+......           ..    
T Consensus       241 ~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~------~~~~~~~~~~~~~~~-----------~~----  298 (336)
T 2vuw_A          241 DVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVL------WLHYLTDKMLKQMTF-----------KT----  298 (336)
T ss_dssp             CCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHH------HHHHHHHHHHHTCCC-----------SS----
T ss_pred             ecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchh------hhhHHHHhhhhhhcc-----------Cc----
Confidence            9999999998776 899999998877 677788988884310      0 0011111100000           00    


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh-cCCCcC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL-QHPWLS  298 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell-~hpwf~  298 (329)
                                   .....       .....+.++.+||++||++|     ||+|+| +||||+
T Consensus       299 -------------~~~~~-------~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          299 -------------KCNTP-------AMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             -------------CCCSH-------HHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             -------------ccchh-------hhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence                         00000       11235788999999999987     999999 999995

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.93  E-value=4.9e-27  Score=236.26  Aligned_cols=166  Identities=25%  Similarity=0.350  Sum_probs=130.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++..    .+++..+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus       161 lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~-giiHrDlkp~NIll~~------------------  217 (681)
T 2pzi_A          161 IVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI-GLVYNDLKPENIMLTE------------------  217 (681)
T ss_dssp             EEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEECS------------------
T ss_pred             EEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC-CCeecccChHHeEEeC------------------
Confidence            589999 8999887654    489999999999999999999995 9999999999999932                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                             ..++|+|||.+...... ....||+
T Consensus       218 -------------------------------------------------------~~~kl~DFG~a~~~~~~-~~~~gt~  241 (681)
T 2pzi_A          218 -------------------------------------------------------EQLKLIDLGAVSRINSF-GYLYGTP  241 (681)
T ss_dssp             -------------------------------------------------------SCEEECCCTTCEETTCC-SCCCCCT
T ss_pred             -------------------------------------------------------CcEEEEecccchhcccC-CccCCCc
Confidence                                                                   26899999999765544 4567899


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+.. +.++|||||||++|+|++|..||.+....                 .++                  
T Consensus       242 ~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~-----------------~~~------------------  285 (681)
T 2pzi_A          242 GFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD-----------------GLP------------------  285 (681)
T ss_dssp             TTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS-----------------SCC------------------
T ss_pred             cccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc-----------------ccc------------------
Confidence            999999988764 89999999999999999999888653100                 000                  


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                      .           ...        ....+..+.+||.+||+.||++||++.+.+.|+|+...
T Consensus       286 ~-----------~~~--------~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  327 (681)
T 2pzi_A          286 E-----------DDP--------VLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVL  327 (681)
T ss_dssp             T-----------TCH--------HHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             c-----------ccc--------ccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHH
Confidence            0           000        00123578899999999999999999999999988643

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.90  E-value=2e-24  Score=194.99  Aligned_cols=150  Identities=13%  Similarity=0.069  Sum_probs=108.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|.+++...    .....+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus       108 lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~-givH~Dikp~NIll~~------------------  164 (286)
T 3uqc_A          108 VVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRA-GVALSIDHPSRVRVSI------------------  164 (286)
T ss_dssp             EEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSGGGEEEET------------------
T ss_pred             EEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHC-CCccCCCCcccEEEcC------------------
Confidence            589999 89999998542    45567888999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                            ...++|++++.               
T Consensus       165 ------------------------------------------------------~g~~kl~~~~~---------------  175 (286)
T 3uqc_A          165 ------------------------------------------------------DGDVVLAYPAT---------------  175 (286)
T ss_dssp             ------------------------------------------------------TSCEEECSCCC---------------
T ss_pred             ------------------------------------------------------CCCEEEEeccc---------------
Confidence                                                                  34577775443               


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                        ++       +++.++|||||||++|+|++|..||.+.......                          ...+....+
T Consensus       176 --~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--------------------------~~~~~~~~~  220 (286)
T 3uqc_A          176 --MP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL--------------------------APAERDTAG  220 (286)
T ss_dssp             --CT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS--------------------------EECCBCTTS
T ss_pred             --cC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh--------------------------HHHHHHhcc
Confidence              22       3789999999999999999999999875311000                          000000000


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      ..        .....       .....+..+.+||.+||+.||++| |+.|+++
T Consensus       221 ~~--------~~~~~-------~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~  258 (286)
T 3uqc_A          221 QP--------IEPAD-------IDRDIPFQISAVAARSVQGDGGIR-SASTLLN  258 (286)
T ss_dssp             CB--------CCHHH-------HCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHH
T ss_pred             CC--------CChhh-------cccCCCHHHHHHHHHHcccCCccC-CHHHHHH
Confidence            00        00001       123346789999999999999999 9999987

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.85  E-value=2.9e-23  Score=204.34  Aligned_cols=116  Identities=20%  Similarity=0.279  Sum_probs=80.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ++++.   ..|+.||+.||+|+|++ |||||||||+|||++                   
T Consensus       319 LVMEyv~G~~L~d~i~~~--~~l~~---~~I~~QIl~AL~ylH~~-GIIHRDIKPeNILL~-------------------  373 (569)
T 4azs_A          319 LVMEKLPGRLLSDMLAAG--EEIDR---EKILGSLLRSLAALEKQ-GFWHDDVRPWNVMVD-------------------  373 (569)
T ss_dssp             EEEECCCSEEHHHHHHTT--CCCCH---HHHHHHHHHHHHHHHHT-TCEESCCCGGGEEEC-------------------
T ss_pred             EEEecCCCCcHHHHHHhC--CCCCH---HHHHHHHHHHHHHHHHC-CceeccCchHhEEEC-------------------
Confidence            699999 99999999875  34654   35889999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....+||+|||.|.....   .....+
T Consensus       374 -----------------------------------------------------~dg~vKL~DFGlAr~~~~~~~~~~t~v  400 (569)
T 4azs_A          374 -----------------------------------------------------ARQHARLIDFGSIVTTPQDCSWPTNLV  400 (569)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTEESCC---CCSHHHH
T ss_pred             -----------------------------------------------------CCCCEEEeecccCeeCCCCCccccCce
Confidence                                                                 345799999999865543   233457


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLF  195 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf  195 (329)
                      ||+.|+|||++.+. +...+|+||+|++.+++.++..+|
T Consensus       401 GTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          401 QSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             HHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             echhhccHHHhCCC-CCCcccccccccchhhhccccchh
Confidence            89999999998765 567899999999988876665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.62  E-value=5.2e-17  Score=158.83  Aligned_cols=110  Identities=20%  Similarity=0.317  Sum_probs=91.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++..          +..++.|++.||.|||++ ||+||||||+||++                    
T Consensus       416 lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~-gIiHrDiKp~NILl--------------------  464 (540)
T 3en9_A          416 IMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN-DVIHNDLTTSNFIF--------------------  464 (540)
T ss_dssp             EEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT-TEECTTCCTTSEEE--------------------
T ss_pred             EEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC-cCccCCCCHHHEEE--------------------
Confidence            689999 8999998875          468999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                          ..  .++|+|||++......        
T Consensus       465 ----------------------------------------------------~~--~~kL~DFGla~~~~~~~~~~~~~~  490 (540)
T 3en9_A          465 ----------------------------------------------------DK--DLYIIDFGLGKISNLDEDKAVDLI  490 (540)
T ss_dssp             ----------------------------------------------------SS--SEEECCCTTCEECCCHHHHHHHHH
T ss_pred             ----------------------------------------------------CC--eEEEEECccCEECCCccccccchh
Confidence                                                                32  7999999999766542        


Q ss_pred             --cccCCCCCCCcchHHhhc--CCCCccchHHHHHHHHHHHHhCCcCC
Q 020248          152 --FAEEIQTRQYRAPEVILR--AGYSFSVDMWSFACTAFELATGDMLF  195 (329)
Q Consensus       152 --~~~~~~~~~y~aPE~~~~--~~~s~~~DiwslG~il~~l~~g~~pf  195 (329)
                        .....||++|+|||++..  ..|+..+|+||..+-..+-+.++.+|
T Consensus       491 ~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          491 VFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             hhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence              124578999999999987  56888899999888777777665544

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.35  E-value=1.6e-13  Score=123.27  Aligned_cols=50  Identities=26%  Similarity=0.539  Sum_probs=42.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      +||||| |++|.+ +.        ...+..++.|++.||.|||+. ||+||||||+||+++
T Consensus       177 lvmE~~~g~~L~~-l~--------~~~~~~i~~qi~~~l~~lH~~-giiHrDlkp~NILl~  227 (282)
T 1zar_A          177 VLMELIDAKELYR-VR--------VENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVLVS  227 (282)
T ss_dssp             EEEECCCCEEGGG-CC--------CSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEEE
T ss_pred             EEEEecCCCcHHH-cc--------hhhHHHHHHHHHHHHHHHHHC-CCEeCCCCHHHEEEE
Confidence            589999 889987 31        234567999999999999995 999999999999993

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.15  E-value=2.4e-11  Score=107.39  Aligned_cols=53  Identities=26%  Similarity=0.479  Sum_probs=44.6

Q ss_pred             Ccccccch------hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHH-hhCCccccCCCCCceee
Q 020248            1 MVLEFLGD------SLLRLIKYSRYKGLELNKVREICKYILTGLDYLH-RELGIIHTDLKPENILL   59 (329)
Q Consensus         1 lV~e~~g~------sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH-~~~giiH~Dlk~~Nil~   59 (329)
                      |||||+|.      +|.++...     .+...+..++.|++.||.||| + .||+||||||+|||+
T Consensus       145 lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~-~givHrDlkp~NILl  204 (258)
T 1zth_A          145 LLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQE-AELVHADLSEYNIMY  204 (258)
T ss_dssp             EEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHT-SCEECSSCSTTSEEE
T ss_pred             EEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHH-CCEEeCCCCHHHEEE
Confidence            68999953      77766432     345678899999999999999 8 599999999999999

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.68  E-value=5.6e-09  Score=97.20  Aligned_cols=52  Identities=17%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVS   61 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~   61 (329)
                      |||||+ |.+|..+        ...+.+..+..||+.+|.+||+ .|||||||||.|||+..
T Consensus       188 LVME~i~G~~L~~l--------~~~~~~~~l~~qll~~l~~lH~-~gIVHrDLKp~NILl~~  240 (397)
T 4gyi_A          188 IVMSLVDALPMRQV--------SSVPDPASLYADLIALILRLAK-HGLIHGDFNEFNILIRE  240 (397)
T ss_dssp             EEEECCSCEEGGGC--------CCCSCHHHHHHHHHHHHHHHHH-TTEECSCCSTTSEEEEE
T ss_pred             EEEEecCCccHhhh--------cccHHHHHHHHHHHHHHHHHHH-CCCcCCCCCHHHEEEeC
Confidence            589999 7776432        2334567789999999999999 59999999999999955

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.98  E-value=3e-06  Score=76.13  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.6

Q ss_pred             chHHHHHHHHHHHHhCCcCCC
Q 020248          176 VDMWSFACTAFELATGDMLFA  196 (329)
Q Consensus       176 ~DiwslG~il~~l~~g~~pf~  196 (329)
                      .+.|+++.++|.+.+|..+|.
T Consensus       268 ~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          268 EKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHH
Confidence            589999999999999987764

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.69  E-value=2.6e-05  Score=68.08  Aligned_cols=36  Identities=8%  Similarity=0.053  Sum_probs=26.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR   43 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~   43 (329)
                      +|||++ |.+|.+..       .+......++.++..++..||+
T Consensus        87 lv~e~i~G~~l~~~~-------~~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           87 LLMSEADGVLCSEEY-------EDEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEEECCSSEEHHHHC-------CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCeehhhcc-------CCcccHHHHHHHHHHHHHHHhC
Confidence            589999 88887652       1223345788899999999997

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.39  E-value=5e-05  Score=69.63  Aligned_cols=39  Identities=18%  Similarity=0.297  Sum_probs=28.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR   43 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~   43 (329)
                      +|||++ |..+.+..    ...++......++.+++..|..||+
T Consensus       118 ~vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          118 YIMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             EEEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhC
Confidence            478999 66664311    1236777888899999999999996

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.23  E-value=0.00011  Score=63.56  Aligned_cols=13  Identities=31%  Similarity=0.455  Sum_probs=12.8

Q ss_pred             ccccCCCCCceee
Q 020248           47 IIHTDLKPENILL   59 (329)
Q Consensus        47 iiH~Dlk~~Nil~   59 (329)
                      ++|||++|.||++
T Consensus       186 l~HgDl~~~Nil~  198 (264)
T 1nd4_A          186 VTHGDACLPNIMV  198 (264)
T ss_dssp             EECSSCCGGGEEE
T ss_pred             EECCCCCCCcEEE
Confidence            9999999999999

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=96.14  E-value=0.006  Score=54.49  Aligned_cols=15  Identities=40%  Similarity=0.722  Sum_probs=13.3

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||||+++.||++.
T Consensus       191 ~~~HgD~~~~N~l~~  205 (306)
T 3tdw_A          191 RLIHGDLSPDHFLTN  205 (306)
T ss_dssp             EEECSCCSGGGEEEC
T ss_pred             eeEeCCCCcccEEEe
Confidence            569999999999993

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=95.28  E-value=0.026  Score=48.92  Aligned_cols=13  Identities=23%  Similarity=0.667  Sum_probs=11.6

Q ss_pred             ccccCCCCCceee
Q 020248           47 IIHTDLKPENILL   59 (329)
Q Consensus        47 iiH~Dlk~~Nil~   59 (329)
                      +||||+++.||++
T Consensus       195 l~HGDl~~~Nil~  207 (272)
T 4gkh_A          195 VTHGDFSLDNLIF  207 (272)
T ss_dssp             EECSCCCTTSEEE
T ss_pred             EEcCCCCCCeEEE
Confidence            6899999999998

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=94.48  E-value=0.29  Score=41.37  Aligned_cols=32  Identities=13%  Similarity=0.210  Sum_probs=28.1

Q ss_pred             hHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 020248            9 SLLRLIKYSRYKGLELNKVREICKYILTGLDYL   41 (329)
Q Consensus         9 sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~l   41 (329)
                      ||.+++.... .+++++++..+|+|.+.+|.-+
T Consensus        34 SL~eIL~~~~-~PlsEEqaWALc~Qc~~~L~~~   65 (229)
T 2yle_A           34 SLEEILRLYN-QPINEEQAWAVCYQCCGSLRAA   65 (229)
T ss_dssp             EHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHhh
Confidence            6999998765 6899999999999999998765

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.07  E-value=0.07  Score=47.60  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=14.1

Q ss_pred             CCccccCCCCCceee
Q 020248           45 LGIIHTDLKPENILL   59 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~   59 (329)
                      .++||||+++.||++
T Consensus       222 ~~l~HgD~~~~Nil~  236 (346)
T 2q83_A          222 PNLCHQDYGTGNTLL  236 (346)
T ss_dssp             CCEECSSCSTTSEEE
T ss_pred             CceecCCCCcccEEE
Confidence            479999999999999

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=90.79  E-value=0.19  Score=46.64  Aligned_cols=15  Identities=27%  Similarity=0.618  Sum_probs=14.1

Q ss_pred             CCccccCCCCCceee
Q 020248           45 LGIIHTDLKPENILL   59 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~   59 (329)
                      ..+||||+++.||++
T Consensus       232 ~~liHGDl~~~Nil~  246 (420)
T 2pyw_A          232 QALIHGDLHTGSVMV  246 (420)
T ss_dssp             CEEECSCCSGGGEEE
T ss_pred             CeEEecCCCCCcEEE
Confidence            489999999999999

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=86.80  E-value=0.19  Score=44.47  Aligned_cols=15  Identities=40%  Similarity=0.908  Sum_probs=13.9

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      ++||+|+++.||++.
T Consensus       188 ~liHgDl~~~Nil~~  202 (322)
T 2ppq_A          188 GVIHADLFQDNVFFL  202 (322)
T ss_dssp             EEECSCCCGGGEEEE
T ss_pred             ccCCCCCCccCEEEe
Confidence            699999999999993

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=86.28  E-value=0.6  Score=41.34  Aligned_cols=14  Identities=36%  Similarity=0.366  Sum_probs=13.3

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      ++||||+++.||++
T Consensus       196 ~l~HgD~~~~Nil~  209 (328)
T 1zyl_A          196 LRLHGDCHAGNILW  209 (328)
T ss_dssp             EECCSSCSGGGEEE
T ss_pred             eeeeCCCCcccEeE
Confidence            68999999999999

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=85.88  E-value=0.5  Score=44.61  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=13.8

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||+|+.+.||++.
T Consensus       291 v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          291 VLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEECSCCCGGGEEEC
T ss_pred             eEEecCCCCCcEEee
Confidence            589999999999995

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=83.67  E-value=0.49  Score=42.14  Aligned_cols=15  Identities=27%  Similarity=0.614  Sum_probs=13.9

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||||+++.||++.
T Consensus       184 ~lvHgD~~~~Nil~~  198 (333)
T 3csv_A          184 VFVHRDFHAQNLLWL  198 (333)
T ss_dssp             EEECSCCSGGGEEEC
T ss_pred             eeEeCCcCcccEEec
Confidence            799999999999993

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.60  E-value=0.5  Score=42.50  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=14.2

Q ss_pred             CCccccCCCCCceeee
Q 020248           45 LGIIHTDLKPENILLV   60 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~~   60 (329)
                      .++||+|+++.||++.
T Consensus       206 ~~~~HgD~~~~N~l~~  221 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVG  221 (339)
T ss_dssp             CEEECSCCCGGGEEEC
T ss_pred             ceeEeCCCCcCCEEEe
Confidence            3699999999999993

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=81.82  E-value=0.42  Score=43.00  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=14.3

Q ss_pred             CCccccCCCCCceeee
Q 020248           45 LGIIHTDLKPENILLV   60 (329)
Q Consensus        45 ~giiH~Dlk~~Nil~~   60 (329)
                      ..+||+|+++.||++.
T Consensus       222 ~~l~HgDl~~~Nil~~  237 (357)
T 3ats_A          222 PVLLWGDARVGNVLYR  237 (357)
T ss_dssp             CEEECSSCSGGGEEEE
T ss_pred             ceEEeCCCCCCeEEEe
Confidence            4799999999999993

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=81.76  E-value=0.45  Score=44.39  Aligned_cols=16  Identities=44%  Similarity=0.590  Sum_probs=14.3

Q ss_pred             CccccCCCCCceeeec
Q 020248           46 GIIHTDLKPENILLVS   61 (329)
Q Consensus        46 giiH~Dlk~~Nil~~~   61 (329)
                      .+||+|+++.||++..
T Consensus       250 v~~H~Dl~~gNiL~~~  265 (429)
T 1nw1_A          250 TFCHNDLQEGNILLPK  265 (429)
T ss_dssp             EEECSCCCGGGEEEEC
T ss_pred             EEEeCCCCCCeEEeeC
Confidence            5899999999999954

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=81.48  E-value=0.57  Score=42.45  Aligned_cols=14  Identities=36%  Similarity=0.508  Sum_probs=13.3

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      ++||+|+++.||++
T Consensus       213 ~l~HgDl~~~Nil~  226 (369)
T 3c5i_A          213 VFCHNDLQENNIIN  226 (369)
T ss_dssp             EEECSCCCGGGEEE
T ss_pred             EEEeCCCCcccEEe
Confidence            68999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-37
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-08
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	9e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	9e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-21
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-21
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-20
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-20
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-06
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	5e-04
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	9e-20
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-19
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-05
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	1e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	0.002
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-19
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-05
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-18
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	7e-08
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-18
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-07
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-17
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	7e-09
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-17
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	9e-12
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-16
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-07
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-16
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	8e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-15
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	0.003
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-10
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-08
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-14
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-08
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	7e-05
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-14
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-04
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-09
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-13
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-09
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-13
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	9e-07
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-07
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-12
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-09
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-12
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-08
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-12
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-04
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-10
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-08
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-09
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-05
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-09
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-07
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-09
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-06
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-09
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-05
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-09
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-07
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-05
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-08
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	4e-07
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-08
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	7e-05
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-08
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	0.003
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	5e-08
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-04
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-07
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-05
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-07
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-06
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-04
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-07
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-04
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-06
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-05
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-05
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-06
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	5e-04
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-06
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-04
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-05
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-05
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	9e-05
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	0.002
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	0.001

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (341), Expect = 1e-37
 Identities = 73/179 (40%), Positives = 111/179 (62%), Gaps = 6/179 (3%)

Query: 125 KPERCL------DGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
           KPE  L          ++ K+ D GNAC  ++ +   IQTR+YR+PEV+L A +    D+
Sbjct: 153 KPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADI 212

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS AC  FEL TGD LF P  G  + +D+DH+A ++EL+G++P  +   G  ++ +F+  
Sbjct: 213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR 272

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           G L+ I +LKFW L+ +L +KY+FS+ +A+E ++FL P+L   P KR  A   + HPWL
Sbjct: 273 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 331

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           MV E LG++LL LIK   ++G+ L  V++I K +L GLDY+HR  GIIHTD+KPEN+L+ 
Sbjct: 101 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME 160

Query: 61  STIDPSKD 68
               P   
Sbjct: 161 IVDSPENL 168

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 9e-26
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 18/196 (9%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA-EEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KP   L       K+ DFG + +     A   + TR Y +PE +    YS   D+WS   
Sbjct: 132 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGL 191

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
           +  E+A G     P         E  L    ++ G             +       D + 
Sbjct: 192 SLVEMAVGRYPIPPPD-----AKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRP 246

Query: 244 IRRLKFWSLDRLLVDKYRF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
              +       +     +  S   + EF +F+   L   P +R   +Q + H ++     
Sbjct: 247 PMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIK---- 302

Query: 303 TRDETKNKSNVEKVDV 318
                  +S+ E+VD 
Sbjct: 303 -------RSDAEEVDF 311

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + +E + G SL +++K  +   +    + ++   ++ GL YL  +  I+H D+KP NIL+
Sbjct: 81  ICMEHMDGGSLDQVLK--KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV 138

Query: 60  VST 62
            S 
Sbjct: 139 NSR 141

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 2e-22
 Identities = 44/178 (24%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 180
           KP   L   +   K+ DFG A       + +  ++ TR YRAPE++  A  Y   VDMW+
Sbjct: 127 KPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWA 186

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   EL          S      D D L  + E +G    +         DY      
Sbjct: 187 VGCILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSF 240

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                   F +    L+D               +  L  F P  R TA Q L+  + S
Sbjct: 241 PGIPLHHIFSAAGDDLLD--------------LIQGLFLFNPCARITATQALKMKYFS 284

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 9e-05
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V +F+   L  +I       L  + ++      L GL+YLH+   I+H DLKP N+LL
Sbjct: 77  LVFDFMETDLEVII-KDNSLVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLL 133

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 1e-21
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP   +   D   K++DFG A     +      + TR YRAPEVIL  GY  +VD+WS  
Sbjct: 146 KPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG 205

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+    +LF  +         D    ++E +G    +       +   +  +    
Sbjct: 206 CIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKY 259

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                     D L       ++  A +  + L  +L   P KR +    LQHP+++
Sbjct: 260 AGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 315

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (219), Expect = 8e-21
 Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 23/175 (13%)

Query: 125 KPERCLDGIDMRCKVVDFG--NACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
           KP+  L     + K+ DFG              + T  YRAPEV+L++ Y+  VD+WS  
Sbjct: 143 KPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVG 202

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C   E+     LF   S      D D L  ++++IG    +                  +
Sbjct: 203 CIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQ 256

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            I                +F         + L+  L F P KR +A   L HP+ 
Sbjct: 257 PIE---------------KFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF 296

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 2e-09
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E +   L   +      G+    ++++   +L GLD+LH    ++H DLKP+NIL+ 
Sbjct: 92  LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH-SHRVVHRDLKPQNILVT 150

Query: 61  S 61
           S
Sbjct: 151 S 151

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 2e-20
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 19/204 (9%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFAC 183
           KP       D   K++DFG A +A+ +    + TR YRAPEVIL    Y+ +VD+WS  C
Sbjct: 148 KPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC 207

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
              E+ TG  LF            D L  +M++ G  P +        +      G  + 
Sbjct: 208 IMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPEL 261

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL-SLRNS 302
            ++           D        +      L  +L    E+R TA + L HP+  SL ++
Sbjct: 262 EKK-----------DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT 310

Query: 303 TRDETKNKSNVEKVDVGMSKLEIK 326
             +    K +    DV  +  E K
Sbjct: 311 EDEPQVQKYDDSFDDVDRTLDEWK 334

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+ F+G  L +L+K+ +   L  ++++ +   +L GL Y+H   GIIH DLKP N+ +
Sbjct: 100 LVMPFMGTDLGKLMKHEK---LGEDRIQFLVYQMLKGLRYIH-AAGIIHRDLKPGNLAV 154

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 2e-20
 Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 23/178 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN---KQFAEEIQTRQYRAPEVILRAGY-SFSVDMWS 180
           KP+  L   +   K+ DFG A       + +  E+ T  YRAPE++L   Y S +VD+WS
Sbjct: 129 KPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWS 188

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   E+ T   LF   S      + D L  +   +G     +  G     DY      
Sbjct: 189 LGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPK 242

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
             R    K                    +    L  +L + P KR +A+  L HP+  
Sbjct: 243 WARQDFSKVVP-------------PLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EFL   L + +  S   G+ L  ++     +L GL + H    ++H DLKP+N+L+
Sbjct: 78  LVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLI 135

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 87.2 bits (215), Expect = 2e-20
 Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 23/178 (12%)

Query: 124 PKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQTRQYRAPEVILRAG-YSFSVDMW 179
            KP+  L   +   K+ DFG A        ++  EI T  YRAP+V++ +  YS ++D+W
Sbjct: 126 LKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIW 185

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S  C   E+  G  LF   S      + D L  +  ++G    K      +   Y     
Sbjct: 186 SVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFT 239

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             + +    F              E       + L  +L   P +R TA+Q L+H + 
Sbjct: 240 VYEPLPWESFLK---------GLDE----SGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E L   L +L+      GLE    +     +L G+ Y H +  ++H DLKP+N+L+
Sbjct: 77  LVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCH-DRRVLHRDLKPQNLLI 133

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 4e-20
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 18/183 (9%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWSFAC 183
           KP       D   K++DFG A   + +    + TR YRAPE++L    Y+ +VD+WS  C
Sbjct: 148 KPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
              EL TG  LF            D L L++ L+G    ++ +    S+   +    L +
Sbjct: 208 IMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAEL-LKKISSESARNYIQSLTQ 260

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST 303
           + ++ F ++                   + L  +L    +KR TA Q L H + +  +  
Sbjct: 261 MPKMNFANVFIGANP----------LAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 310

Query: 304 RDE 306
            DE
Sbjct: 311 DDE 313

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 9e-20
 Identities = 38/179 (21%), Positives = 60/179 (33%), Gaps = 49/179 (27%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA-NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFAC 183
           KPE  L G     K+ DFG +  A + +      T  Y  PE+I    +   VD+WS   
Sbjct: 133 KPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 192

Query: 184 TAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKR 243
             +E   G   F   +               E                          KR
Sbjct: 193 LCYEFLVGKPPFEANT-------------YQET------------------------YKR 215

Query: 244 IRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS 302
           I R+           ++ F +       + +  LL   P +RP  ++ L+HPW++  +S
Sbjct: 216 ISRV-----------EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS 263

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++LE+    ++ R ++  +    +  +       +   L Y H    +IH D+KPEN+LL
Sbjct: 83  LILEYAPLGTVYRELQ--KLSKFDEQRTATYITELANALSYCH-SKRVIHRDIKPENLLL 139

Query: 60  VS 61
            S
Sbjct: 140 GS 141

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 1e-19
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNA-------CRANKQFAEEIQTRQYRAPEVIL-RAGYSFSV 176
           K    L   D   K+ DFG A            ++   + T  YR PE++L    Y   +
Sbjct: 144 KAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPI 203

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+W   C   E+ T   +    +      ++  LAL+ +L G +            + + 
Sbjct: 204 DLWGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITP----------EVWP 247

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              + +   +L+     +  V     +        + +  LL   P +R  +   L H +
Sbjct: 248 NVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF 307

Query: 297 LS 298
             
Sbjct: 308 FW 309

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V +F    L  L+     K   L++++ + + +L GL Y+HR   I+H D+K  N+L+ 
Sbjct: 94  LVFDFCEHDLAGLLSNVLVK-FTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLIT 151

Query: 61  ST 62
             
Sbjct: 152 RD 153

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 1e-19
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 22/178 (12%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAG-YSFSVDMWS 180
           KP+  L   +   K+ +FG A       + ++ E+ T  YR P+V+  A  YS S+DMWS
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWS 187

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   ELA       P +     + +D L  +  L+G    +      +  DY      
Sbjct: 188 AGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMY 242

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                 +             + +        + L  LL   P +R +A++ LQHP+ S
Sbjct: 243 PATTSLVNVVP---------KLNA----TGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF    L +              V+     +L GL + H    ++H DLKP+N+L+
Sbjct: 78  LVFEFCDQDLKKYFDSCNGDLDP-EIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLI 134

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 83.4 bits (205), Expect = 9e-19
 Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 13/171 (7%)

Query: 129 CLDGIDMRCKVVDFGNAC--RANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFACTA 185
            +D    + +++D+G A      +++   + +R ++ PE+++    Y +S+DMWS  C  
Sbjct: 161 MIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCML 220

Query: 186 FELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIR 245
             +      F         ++ D L  + +++G       I     +     +  L R  
Sbjct: 221 ASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHS 275

Query: 246 RLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
           R K W       +++  S     E  +FL  LL +  + R TA++ ++HP+
Sbjct: 276 R-KRWERFVHSENQHLVSP----EALDFLDKLLRYDHQSRLTAREAMEHPY 321

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V E + ++  +      Y+ L    +R     IL  LDY H  +GI+H D+KP N+++ 
Sbjct: 109 LVFEHVNNTDFK----QLYQTLTDYDIRFYMYEILKALDYCH-SMGIMHRDVKPHNVMID 163

Query: 61  S 61
            
Sbjct: 164 H 164

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 2e-18
 Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 23/178 (12%)

Query: 125 KPER-CLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWS 180
           KP+   LD      K+ DFG+A      +     I +R YRAPE+I  A  Y+ S+D+WS
Sbjct: 149 KPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWS 208

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
             C   EL  G  +F   S        D L  +++++G   R+                 
Sbjct: 209 AGCVLAELLLGQPIFPGDS------GVDQLVEIIKVLGTPTRE------------QIREM 250

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                  KF  +      K     T   E       LL++TP  R T  +   H +  
Sbjct: 251 NPNYTEFKFPQIKAHPWTKVFRPRTPP-EAIALCSRLLEYTPTARLTPLEACAHSFFD 307

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 7e-08
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 1   MVLEFLGDSLLRLIKY--SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           +VL+++ +++ R+ ++     + L +  V+     +   L Y+H   GI H D+KP+N+L
Sbjct: 96  LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH-SFGICHRDIKPQNLL 154

Query: 59  LVSTIDPSK 67
           L       K
Sbjct: 155 LDPDTAVLK 163

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 4e-18
 Identities = 40/176 (22%), Positives = 61/176 (34%), Gaps = 50/176 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFA---EEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           KP           K+ DFG A   N   +     + T  Y +PE + R  Y+   D+WS 
Sbjct: 141 KPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSL 200

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
            C  +EL      F   S               EL GK+                R G  
Sbjct: 201 GCLLYELCALMPPFTAFS-------------QKELAGKI----------------REGKF 231

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
           +RI               YR+S+    E  E +  +L+     RP+ ++ L++P +
Sbjct: 232 RRI--------------PYRYSD----ELNEIITRMLNLKDYHRPSVEEILENPLI 269

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 1   MVLEFL-GDSLLRLIKYSR--YKGLELNKVREICKYILTGLDYLHRE----LGIIHTDLK 53
           +V+E+  G  L  +I       + L+   V  +   +   L   HR       ++H DLK
Sbjct: 82  IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLK 141

Query: 54  PENILL 59
           P N+ L
Sbjct: 142 PANVFL 147

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 48/175 (27%)

Query: 125 KPERCL-DGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGYSFSVDMWSFA 182
           K +     G     K+ D G A      FA+ +  T ++ APE+     Y  SVD+++F 
Sbjct: 141 KCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEM-YEEKYDESVDVYAFG 199

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
               E+AT +  +          +  + A +   +    +                    
Sbjct: 200 MCMLEMATSEYPY---------SECQNAAQIYRRVTSGVKPA------------------ 232

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                              F +    E  E +   +    ++R + +  L H + 
Sbjct: 233 ------------------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-LGIIHTDLKPENIL 58
           +V E +   +L   +K  R+K +++  +R  C+ IL GL +LH     IIH DLK +NI 
Sbjct: 89  LVTELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIF 146

Query: 59  LVS 61
           +  
Sbjct: 147 ITG 149

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 5e-17
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 24/180 (13%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANK------QFAEEIQTRQYRAPEVILR-AGYSFSVD 177
           KP   L       K+ DFG A  A+          E + TR YRAPE++L   GY+ S+D
Sbjct: 136 KPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSID 195

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WS  C   E+ +   +F  K         D L  ++ ++G             ++  + 
Sbjct: 196 IWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPS----------QEDLNC 239

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
             +LK    L        +     F   D+ +  + L  +L F P KR   +Q L HP+L
Sbjct: 240 IINLKARNYLLSLPHKNKVPWNRLFPNADS-KALDLLDKMLTFNPHKRIEVEQALAHPYL 298

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V   +G  L +L+K    + L  + +      IL GL Y+H    ++H DLKP N+LL
Sbjct: 88  LVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIH-SANVLHRDLKPSNLLL 142

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 53/182 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAE---EIQTRQYRAPEVIL-----RAGYSFSV 176
           K    L  +D   K+ DFG + +  +        I T  + APEV++        Y +  
Sbjct: 137 KAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA 196

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WS   T  E+A  +             + + + +++++                    
Sbjct: 197 DVWSLGITLIEMAEIEPPH---------HELNPMRVLLKIA------------------- 228

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
              +   + +   WS                  F +FL   L+   + R T  Q LQHP+
Sbjct: 229 -KSEPPTLAQPSRWS----------------SNFKDFLKKCLEKNVDARWTTSQLLQHPF 271

Query: 297 LS 298
           ++
Sbjct: 272 VT 273

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 9e-12
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +++EF     +  +     + L  ++++ +CK  L  L+YLH +  IIH DLK  NIL  
Sbjct: 86  ILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH-DNKIIHRDLKAGNILFT 144

Query: 61  S 61
            
Sbjct: 145 L 145

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-16
 Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 48/186 (25%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA---NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           K +  L G+D   K+ DFG   +      + +  + T  + APEV+ R  Y   VD+WS 
Sbjct: 143 KSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 202

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
              A E+  G+  +          +E+ L  +  +      ++                 
Sbjct: 203 GIMAIEMIEGEPPY---------LNENPLRALYLIATNGTPEL----------------- 236

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 301
                              +  E  +  F +FL   LD   EKR +A++ LQH +L +  
Sbjct: 237 -------------------QNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAK 277

Query: 302 STRDET 307
                T
Sbjct: 278 PLSSLT 283

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+L G SL  ++  +        ++  +C+  L  L++LH    +IH D+K +NILL
Sbjct: 94  VVMEYLAGGSLTDVVTETCMD---EGQIAAVCRECLQALEFLH-SNQVIHRDIKSDNILL 149

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 76.7 bits (188), Expect = 2e-16
 Identities = 36/188 (19%), Positives = 61/188 (32%), Gaps = 48/188 (25%)

Query: 125 KPERCL--DGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
           KPE  +         K++DFG     +  +       T ++ APEV       +  DMWS
Sbjct: 151 KPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWS 210

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
               ++ L +G   F  ++      D++ L  +      M                    
Sbjct: 211 VGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDDSA---------------- 248

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR 300
                     S                 +  +F+  LL   P  R T  Q L+HPWL+  
Sbjct: 249 ------FSGIS----------------EDGKDFIRKLLLADPNTRMTIHQALEHPWLTPG 286

Query: 301 NSTRDETK 308
           N+   +++
Sbjct: 287 NAPGRDSQ 294

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           M+ EF+ G  L   +    +  +  ++  E  + +  GL ++H E   +H DLKPENI+ 
Sbjct: 100 MIYEFMSGGELFEKV-ADEHNKMSEDEAVEYMRQVCKGLCHMH-ENNYVHLDLKPENIMF 157

Query: 60  VS 61
            +
Sbjct: 158 TT 159

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 1e-15
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 46/176 (26%)

Query: 131 DGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFEL 188
           +    R K++DFG A + +   +F     T ++ APE++         DMWS     + L
Sbjct: 150 NVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL 209

Query: 189 ATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLK 248
            +G   F   +       ++ LA +  +  +   +                         
Sbjct: 210 LSGASPFLGDT------KQETLANVSAVNYEFEDEY------------------------ 239

Query: 249 FWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR 304
                        FS T A    +F+  LL   P+KR T Q  LQHPW+  +++ +
Sbjct: 240 -------------FSNTSA-LAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQ 281

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           ++LE +    L      + + L   +  E  K IL G+ YLH  L I H DLKPENI+L+
Sbjct: 90  LILELVAGGELFDFLAEK-ESLTEEEATEFLKQILNGVYYLH-SLQIAHFDLKPENIMLL 147

Query: 61  S 61
            
Sbjct: 148 D 148

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 2e-14
 Identities = 39/178 (21%), Positives = 58/178 (32%), Gaps = 45/178 (25%)

Query: 125 KPERCL---DGIDMRCKVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAGYSFSVDMW 179
           KPE  L      +   K+ DFG A     +        T  Y APEV+    Y  S DMW
Sbjct: 138 KPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMW 197

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     + L  G   F    G             + +   M  +I               
Sbjct: 198 SLGVIMYILLCGYPPFYSNHG-------------LAISPGMKTRI--------------- 229

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
              R+ + +F + +   V +         E    +  LL   P +R T  + + HPW+
Sbjct: 230 ---RMGQYEFPNPEWSEVSE---------EVKMLIRNLLKTEPTQRMTITEFMNHPWI 275

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E L G  L   I+    +     +  EI K I   + YLH  + I H D+KPEN+L 
Sbjct: 86  IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH-SINIAHRDVKPENLLY 144

Query: 60  VSTIDPS 66
            S    +
Sbjct: 145 TSKRPNA 151

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 38/185 (20%), Positives = 57/185 (30%), Gaps = 46/185 (24%)

Query: 134 DMRCKVVDFGNACRANKQ--FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
               K++DFG A + N          T ++ APE++ R    F  DMW+     + L +G
Sbjct: 165 ASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 224

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              FA +       D + L  +     +                               S
Sbjct: 225 LSPFAGED------DLETLQNVKRCDWEFDEDA----------------------FSSVS 256

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETKNKS 311
                            E  +F+  LL   P KR T    L+HPWL   +S        S
Sbjct: 257 ----------------PEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSS 300

Query: 312 NVEKV 316
              K+
Sbjct: 301 RYNKI 305

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++LEFL G  L   I  +    +   +V    +    GL ++H E  I+H D+KPENI+ 
Sbjct: 103 LILEFLSGGELFDRIA-AEDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIMC 160

Query: 60  VSTIDPS 66
            +    S
Sbjct: 161 ETKKASS 167

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 3e-14
 Identities = 30/180 (16%), Positives = 48/180 (26%), Gaps = 51/180 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRA-----NKQFAEEIQTRQYRAPEVILRAGY-SFSVDM 178
           KPE  L       K+ DFG A         +   +   T  Y APE++ R  + +  VD+
Sbjct: 130 KPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDV 189

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS       +  G++         + +  D      +   K                   
Sbjct: 190 WSCGIVLTAMLAGEL--------PWDQPSDSCQEYSDWKEKKT----------------- 224

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                   L  W          +            L  +L   P  R T     +  W +
Sbjct: 225 -------YLNPWK---------KIDS----APLALLHKILVENPSARITIPDIKKDRWYN 264

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           + LE+  G  L   I+     G+     +     ++ G+ YLH  +GI H D+KPEN+LL
Sbjct: 80  LFLEYCSGGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLH-GIGITHRDIKPENLLL 136

Query: 60  VS 61
             
Sbjct: 137 DE 138

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 4e-14
 Identities = 37/179 (20%), Positives = 52/179 (29%), Gaps = 52/179 (29%)

Query: 124 PKPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
            K +  L   D   K+ DFG        + +      T  Y APE++L   Y+ SVD WS
Sbjct: 129 LKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWS 188

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F    +E+  G   F           +D   L                            
Sbjct: 189 FGVLLYEMLIGQSPF---------HGQDEEEL---------------------------- 211

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTA-QQCLQHPWLS 298
                         + +D   +     +E  + LV L    PEKR        QHP   
Sbjct: 212 -----------FHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFR 259

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
            V+E+L G  L+  I+       +L++       I+ GL +LH   GI++ DLK +NIL
Sbjct: 80  FVMEYLNGGDLMYHIQ--SCHKFDLSRATFYAAEIILGLQFLH-SKGIVYRDLKLDNIL 135

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 47/199 (23%)

Query: 130 LDGIDMRCKVVDFGNACRA--NKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFE 187
               D +  + DFG +         +    T  Y APEV+ +  YS +VD WS    A+ 
Sbjct: 142 SLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYI 201

Query: 188 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
           L  G   F           +++ A + E I K   +                        
Sbjct: 202 LLCGYPPF----------YDENDAKLFEQILKAEYEF---------------------DS 230

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET 307
            +W            S+       +F+  L++  PEKR T +Q LQHPW++  ++  D+ 
Sbjct: 231 PYWD---------DISD----SAKDFIRHLMEKDPEKRFTCEQALQHPWIA-GDTALDKN 276

Query: 308 KNKSNVEKVDVGMSKLEIK 326
            ++S  E++    +K + K
Sbjct: 277 IHQSVSEQIKKNFAKSKWK 295

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++++ + G  L   I               +   +L  + YLH +LGI+H DLKPEN+L 
Sbjct: 84  LIMQLVSGGELFDRIV--EKGFYTERDASRLIFQVLDAVKYLH-DLGIVHRDLKPENLLY 140

Query: 60  VSTIDPSK 67
            S  + SK
Sbjct: 141 YSLDEDSK 148

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.9 bits (168), Expect = 5e-14
 Identities = 41/181 (22%), Positives = 59/181 (32%), Gaps = 52/181 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQTRQYRAPEVIL------RAGYSFSV 176
           KPE  L   DM  K+ DFG +C+ +  ++  E   T  Y APE+I         GY   V
Sbjct: 137 KPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV 196

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           DMWS     + L  G   F                LM+ +I     +             
Sbjct: 197 DMWSTGVIMYTLLAGSPPF----------WHRKQMLMLRMIMSGNYQF------------ 234

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                        +S                    + +   L   P+KR TA++ L HP+
Sbjct: 235 ------GSPEWDDYS----------------DTVKDLVSRFLVVQPQKRYTAEEALAHPF 272

Query: 297 L 297
            
Sbjct: 273 F 273

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 55.1 bits (132), Expect = 3e-09
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V + +    L   +       L   + R+I + +L  +  LH +L I+H DLKPENILL
Sbjct: 87  LVFDLMKKGELFDYLT--EKVTLSEKETRKIMRALLEVICALH-KLNIVHRDLKPENILL 143

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.5 bits (167), Expect = 1e-13
 Identities = 34/205 (16%), Positives = 58/205 (28%), Gaps = 50/205 (24%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVIL---RAGYSFSVDMWSF 181
           K    L       K+ DFG+A          + T  + APEVIL      Y   VD+WS 
Sbjct: 142 KAGNILLSEPGLVKLGDFGSASIMAPAN-SFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 200

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
             T  ELA                + + ++ +  +       +                 
Sbjct: 201 GITCIELAERKPPL---------FNMNAMSALYHIAQNESPAL----------------- 234

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN 301
                                S   +  F  F+   L   P+ RPT++  L+H ++    
Sbjct: 235 --------------------QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER 274

Query: 302 STRDETKNKSNVEKVDVGMSKLEIK 326
                       +     +  L+ +
Sbjct: 275 PPTVIMDLIQRTKDAVRELDNLQYR 299

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E+   S   L++  + K L+  ++  +    L GL YLH    +IH D+K  NILL
Sbjct: 92  LVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLH-SHNMIHRDVKAGNILL 148

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 59/185 (31%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQT-----RQYRAPEVILRAGYSFSVDMW 179
           KPE  L   DM  ++ DFG A   + +  +          QY +PE++       S D+W
Sbjct: 135 KPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLW 194

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           +  C  ++L  G   F             +  L+ + I K+                   
Sbjct: 195 ALGCIIYQLVAGLPPF----------RAGNEYLIFQKIIKL------------------- 225

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC------LQ 293
                              +Y F E    +  + +  LL     KR   ++         
Sbjct: 226 -------------------EYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKA 266

Query: 294 HPWLS 298
           HP+  
Sbjct: 267 HPFFE 271

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 9e-07
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
             L +     LL+ I+  +    +    R     I++ L+YLH   GIIH DLKPENILL
Sbjct: 85  FGLSYAKNGELLKYIR--KIGSFDETCTRFYTAEIVSALEYLH-GKGIIHRDLKPENILL 141

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 4e-13
 Identities = 34/166 (20%), Positives = 53/166 (31%), Gaps = 46/166 (27%)

Query: 134 DMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG 191
               K+++FG A   +    F       +Y APEV      S + DMWS     + L +G
Sbjct: 140 SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

Query: 192 DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWS 251
              F  ++      ++  +  +M        +                        K  S
Sbjct: 200 INPFLAET------NQQIIENIMNAEYTFDEEA----------------------FKEIS 231

Query: 252 LDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
                            E  +F+  LL    + R TA + LQHPWL
Sbjct: 232 ----------------IEAMDFVDRLLVKERKSRMTASEALQHPWL 261

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           M+ EF+ G  +   I  S ++ L   ++      +   L +LH    I H D++PENI+ 
Sbjct: 78  MIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEALQFLH-SHNIGHFDIRPENIIY 135

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 50/185 (27%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANK-----QFAEEIQTRQYRAPEVIL---RAGYSFSV 176
           K        D+  K+ DFG A   ++     QF +   +  + APEVI    +  YSF  
Sbjct: 131 KSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS 190

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+++F    +EL TG + +          + ++   ++ ++G+                 
Sbjct: 191 DVYAFGIVLYELMTGQLPY---------SNINNRDQIIFMVGR----------------- 224

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPW 296
                             L  D  +      +     +   L    ++RP   Q L    
Sbjct: 225 ----------------GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIE 268

Query: 297 LSLRN 301
           L  R+
Sbjct: 269 LLARS 273

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V ++  G SL   +     K  E+ K+ +I +    G+DYLH +  IIH DLK  NI L
Sbjct: 80  IVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMDYLHAK-SIIHRDLKSNNIFL 137

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 23/170 (13%), Positives = 41/170 (24%), Gaps = 46/170 (27%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
                L   D   KV DFG    A+          ++ APE +    +S   D+WSF   
Sbjct: 130 AARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 189

Query: 185 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 244
            +E+ +   +               L  ++  + K  +                      
Sbjct: 190 LWEIYSFGRVP---------YPRIPLKDVVPRVEKGYK---------------------- 218

Query: 245 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                              +       E +          RP+  Q  + 
Sbjct: 219 ---------------MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E++   SL+  ++      L  + + +    +   ++YL      +H DL   N+L+
Sbjct: 78  IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLV 136

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 2e-12
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 56/170 (32%)

Query: 130 LDGIDMRCKVVDFGNACRANKQFAEEIQ-TRQYRAPEVILRAGY-SFSVDMWSFACTAFE 187
           +D      K++DFG+          +   TR Y  PE I    Y   S  +WS     ++
Sbjct: 143 IDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYD 202

Query: 188 LATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRL 247
           +                             G +P                          
Sbjct: 203 MVC---------------------------GDIP-------------------------- 209

Query: 248 KFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL 297
            F   + ++  +  F +  + E    +   L   P  RPT ++   HPW+
Sbjct: 210 -FEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWM 258

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++LE            +    L+    R     +L  + + H   G++H D+K ENIL+
Sbjct: 86  LILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH-NCGVLHRDIKDENILI 143

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (156), Expect = 3e-12
 Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 53/179 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L   +   K+ DFG A            T  Y APEV+    Y+ S+D WSF   
Sbjct: 131 KPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 190

Query: 185 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 244
            +E+  G   F   +              M+                             
Sbjct: 191 IYEMLAGYTPFYDSN-------------TMKT---------------------------- 209

Query: 245 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR-----PTAQQCLQHPWLS 298
                   +++L  + RF      +  + L  L+     +R        +    HPW  
Sbjct: 210 -------YEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFK 261

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           M+++++    L  +     +       +     +   L+YLH    II+ DLKPENILL 
Sbjct: 81  MIMDYIEGGELFSLLRKSQRFPN-PVAKFYAAEVCLALEYLH-SKDIIYRDLKPENILLD 138

Query: 61  S 61
            
Sbjct: 139 K 139

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 3e-11
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 56/182 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNA---CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSF 181
           K E  +   D   K+ DFG                 T +Y APEV+    Y  +VD W  
Sbjct: 132 KLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGL 191

Query: 182 ACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDL 241
               +E+  G + F          ++DH  L                             
Sbjct: 192 GVVMYEMMCGRLPF---------YNQDHERL----------------------------- 213

Query: 242 KRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPW 296
                      + +L+++ RF  T + E    L  LL   P++R       A++ ++H +
Sbjct: 214 ----------FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRF 263

Query: 297 LS 298
             
Sbjct: 264 FL 265

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 6e-04
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 7   GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           G  L   +   R +     + R     I++ L+YLH    +++ D+K EN++L
Sbjct: 89  GGELFFHLS--RERVFTEERARFYGAEIVSALEYLH-SRDVVYRDIKLENLML 138

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 52/181 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACR-ANKQFAEEIQTRQYRAPEVILRA-GYSFSVDMWSFA 182
           KP   L       ++ D G AC  + K+    + T  Y APEV+ +   Y  S D +S  
Sbjct: 134 KPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLG 193

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
           C  F+L  G   F           +       E+                          
Sbjct: 194 CMLFKLLRGHSPF----------RQHKTKDKHEIDRMTLT-------------------- 223

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWL 297
                                ++ + E    L  LL     +R       AQ+  + P+ 
Sbjct: 224 ---------------MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 268

Query: 298 S 298
            
Sbjct: 269 R 269

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
            +L+ + G  L   +   ++       +R     I+ GL+++H    +++ DLKP NILL
Sbjct: 84  FILDLMNGGDLHYHLS--QHGVFSEADMRFYAAEIILGLEHMH-NRFVVYRDLKPANILL 140

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.2 bits (137), Expect = 6e-10
 Identities = 19/184 (10%), Positives = 41/184 (22%), Gaps = 53/184 (28%)

Query: 129 CLDGIDMRCKVVDFGNACRAN----------KQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
            L        ++DFG A +            ++      T +Y +    L    S   D+
Sbjct: 137 GLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDL 196

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
            S          G                                           +   
Sbjct: 197 ESLGYVLMYFNLG----------------------------------------SLPWQGL 216

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHP 295
               + ++ +  S  ++        +    EFA +L        + +P      Q  ++ 
Sbjct: 217 KAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL 276

Query: 296 WLSL 299
           +   
Sbjct: 277 FHRQ 280

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL 58
           MV+E LG SL  L  +   +   L  V  +   +++ ++Y+H     IH D+KP+N L
Sbjct: 80  MVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIH-SKNFIHRDVKPDNFL 135

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 39/182 (21%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN-------KQFAEEIQTRQYRAPEVILRA------G 171
           K +  L   +  C + D G A R +             + T++Y APEV+  +       
Sbjct: 135 KSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFE 194

Query: 172 YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS 231
                D+++     +E+A    +            +   +                    
Sbjct: 195 SFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS-------------------- 234

Query: 232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC 291
                    ++ +R++      R  +     S    R  A+ +          R TA + 
Sbjct: 235 ------DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRI 288

Query: 292 LQ 293
            +
Sbjct: 289 KK 290

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRE-------LGIIHTDL 52
           +V ++    SL   +       + +  + ++     +GL +LH E         I H DL
Sbjct: 78  LVSDYHEHGSLFDYL---NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDL 134

Query: 53  KPENILL 59
           K +NIL+
Sbjct: 135 KSKNILV 141

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 37/179 (20%), Positives = 51/179 (28%), Gaps = 53/179 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACT 184
           KPE  L       +V DFG A R   +      T +  APE+IL  GY+ +VD W+    
Sbjct: 168 KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVL 227

Query: 185 AFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRI 244
            +E+A G   F            D    + E I                           
Sbjct: 228 IYEMAAGYPPF----------FADQPIQIYEKIVSGK----------------------- 254

Query: 245 RRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKR-----PTAQQCLQHPWLS 298
                           RF    + +  + L  LL     KR             H W +
Sbjct: 255 ---------------VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (114), Expect = 6e-07
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 18  RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           R         R     I+   +YLH  L +I+ DLKPEN+L+
Sbjct: 134 RIGRFSEPHARFYAAQIVLTFEYLH-SLDLIYRDLKPENLLI 174

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-09
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 52/180 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           +    L G ++ CKV DFG A           Q      ++ APE  L   ++   D+WS
Sbjct: 140 RAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWS 199

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F     EL T         G+       +  ++ +                         
Sbjct: 200 FGILLTELTTK--------GRVPYPGMVNREVLDQ------------------------- 226

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS 298
           ++R  R+                E       + +       PE+RPT +        + +
Sbjct: 227 VERGYRMPCPP---------ECPE----SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 273

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V E++   SLL  +K    K L L ++ ++   I +G+ Y+ R +  +H DL+  NIL+
Sbjct: 88  IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER-MNYVHRDLRAANILV 146

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 26/186 (13%), Positives = 47/186 (25%), Gaps = 55/186 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 178
                L       K+ DFG +                    ++ APE I    +S   D+
Sbjct: 134 AARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDV 193

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WSF    +E  +                           G+ P +    G +  +     
Sbjct: 194 WSFGVLMWEAFSY--------------------------GQKPYR----GMKGSEVTAML 223

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ---CLQHP 295
              +R+                       RE  + +     +  E RP        L++ 
Sbjct: 224 EKGERMGCPAGCP----------------REMYDLMNLCWTYDVENRPGFAAVELRLRNY 267

Query: 296 WLSLRN 301
           +  + N
Sbjct: 268 YYDVVN 273

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E      L + ++  + + ++   + E+   +  G+ YL      +H DL   N+LL
Sbjct: 84  LVMEMAELGPLNKYLQ--QNRHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLL 140

Query: 60  VS 61
           V+
Sbjct: 141 VT 142

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 24/146 (16%)

Query: 125 KPERCLDGIDMRC-----KVVDFGNACRANKQFAEE----------IQTRQYRAPEVILR 169
           KP+  L G           VVDFG          ++            T +Y +    L 
Sbjct: 128 KPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG 187

Query: 170 AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALM------MELIGKMPRK 223
              S   D+ +          G + +         +  + +          EL    P +
Sbjct: 188 REQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE 247

Query: 224 IA--IGGAQSKDYFDRHGDLKRIRRL 247
               +  A++  +     D   ++ L
Sbjct: 248 FYKYMHYARNLAFDATP-DYDYLQGL 272

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V++ LG SL  L+     +   +  V    K +L  +  +H E  +++ D+KP+N L+ 
Sbjct: 78  LVIDLLGPSLEDLLD-LCGRKFSVKTVAMAAKQMLARVQSIH-EKSLVYRDIKPDNFLIG 135

Query: 61  STIDPSKDPIR---SGLTPILERPEGSINGGSTSTMTIV 96
                + + I     G+      P    +        + 
Sbjct: 136 RPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLS 174

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 50/174 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
               CL G +   KV DFG                    ++ +PEV   + YS   D+WS
Sbjct: 128 AARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWS 187

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F    +E+ +         G+   E+  +  ++                          D
Sbjct: 188 FGVLMWEVFSE--------GKIPYENRSNSEVVE-------------------------D 214

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
           +    RL    L              +    + +       PE RP   + L+ 
Sbjct: 215 ISTGFRLYKPRL-------------ASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V EF+    L     ++        +  +C  +  G+ YL  E  +IH DL   N L+
Sbjct: 77  LVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE-EACVIHRDLAARNCLV 134

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 28/183 (15%), Positives = 51/183 (27%), Gaps = 50/183 (27%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 178
           KP   +       KV+DFG A           Q      T QY +PE           D+
Sbjct: 138 KPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 197

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           +S  C  +E+ TG+  F           +  +++  + + + P                 
Sbjct: 198 YSLGCVLYEVLTGEPPF---------TGDSPVSVAYQHVREDPI---------------- 232

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS 298
                       S     +           +    ++  L   PE R      ++   + 
Sbjct: 233 ----------PPSARHEGLSA---------DLDAVVLKALAKNPENRYQTAAEMRADLVR 273

Query: 299 LRN 301
           + N
Sbjct: 274 VHN 276

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +V+E++ G +L  ++       +   +  E+       L++ H + GIIH D+KP NI++
Sbjct: 88  IVMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSH-QNGIIHRDVKPANIMI 144

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV 60
           +V+E  G   L      + + + ++ V E+   +  G+ YL  +   +H DL   N+LLV
Sbjct: 85  LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLV 143

Query: 61  STIDPSKDPIRSGLTPILERPEGSINGGSTSTMTI 95
           +           GL+  L   +      S     +
Sbjct: 144 N--RHYAKISDFGLSKALGADDSYYTARSAGKWPL 176

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 27/194 (13%), Positives = 48/194 (24%), Gaps = 55/194 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 178
                L       K+ DFG +       +            ++ APE I    +S   D+
Sbjct: 136 AARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV 195

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WS+  T +E  +                           G+ P K      +  +     
Sbjct: 196 WSYGVTMWEALSY--------------------------GQKPYK----KMKGPEVMAFI 225

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ---QCLQHP 295
              KR+                        E    +     +  E RP      Q ++  
Sbjct: 226 EQGKRMECPPECP----------------PELYALMSDCWIYKWEDRPDFLTVEQRMRAC 269

Query: 296 WLSLRNSTRDETKN 309
           + SL +       +
Sbjct: 270 YYSLASKVEGHHHH 283

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 28/185 (15%), Positives = 49/185 (26%), Gaps = 51/185 (27%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 179
                L       K+ DFG A     +  E          ++ A E IL   Y+   D+W
Sbjct: 138 AARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVW 197

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S+  T +EL T                           G  P      G  + +      
Sbjct: 198 SYGVTVWELMTF--------------------------GSKP----YDGIPASEISSILE 227

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL 299
             +R+ +    +                 +    +V       + RP  ++ +       
Sbjct: 228 KGERLPQPPICT----------------IDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271

Query: 300 RNSTR 304
           R+  R
Sbjct: 272 RDPQR 276

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ + +    L          +    +   C  I  G++YL     ++H DL   N+L+
Sbjct: 87  LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLV 144

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 3e-08
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ E++   SL+  +K      L +NK+ ++   I  G+ ++  E   IH DL+  NIL+
Sbjct: 84  IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE-ERNYIHRDLRAANILV 142

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 27/180 (15%), Positives = 49/180 (27%), Gaps = 52/180 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
           +    L    + CK+ DFG A           +      ++ APE I    ++   D+WS
Sbjct: 136 RAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWS 195

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F     E+ T         G+       +  ++                          +
Sbjct: 196 FGILLTEIVTH--------GRIPYPGMTNPEVIQ-------------------------N 222

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS 298
           L+R  R+                +    E  + +       PE RPT          + +
Sbjct: 223 LERGYRMVRP-------------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 29/184 (15%), Positives = 52/184 (28%), Gaps = 55/184 (29%)

Query: 126 PERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ----YRAPEVIL--RAGYSFSVDMW 179
            E  L   +    + DFG +        E          Y AP+++    +G+  +VD W
Sbjct: 157 LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWW 216

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S     +EL TG   F          +++  A +   I K                    
Sbjct: 217 SLGVLMYELLTGASPFTVDG------EKNSQAEISRRILKSE------------------ 252

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQH 294
                                 + +  +    + +  LL   P+KR       A +  +H
Sbjct: 253 --------------------PPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 292

Query: 295 PWLS 298
            +  
Sbjct: 293 LFFQ 296

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++    G  L   +   + +    ++V+     I+  L++LH +LGII+ D+K ENILL
Sbjct: 107 ILDYINGGELFTHLS--QRERFTEHEVQIYVGEIVLALEHLH-KLGIIYRDIKLENILL 162

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 53/177 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-------TRQYRAPEVILRAGYSFSVD 177
               C+       KV DFG A     +  + +          ++ A E +    ++   D
Sbjct: 157 AARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD 216

Query: 178 MWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR 237
           +WSF    +EL T         G     D +   + + L+                    
Sbjct: 217 VWSFGVLLWELMTR--------GAPPYPDVNTFDITVYLL-------------------- 248

Query: 238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
               +R+ + ++                      E ++       E RP+  + +  
Sbjct: 249 --QGRRLLQPEYCP----------------DPLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +VL ++    LR    +      +  +      +  G+ +L  +   +H DL   N +L
Sbjct: 106 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCML 163

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 26/174 (14%), Positives = 48/174 (27%), Gaps = 50/174 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQ----FAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
               CL       KV DFG +                  ++  PEV++ + +S   D+W+
Sbjct: 127 AARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWA 186

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F    +E+ +                           GKMP         + +  +    
Sbjct: 187 FGVLMWEIYSL--------------------------GKMP----YERFTNSETAEHIAQ 216

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
             R+ R    S                 +    +        ++RPT +  L +
Sbjct: 217 GLRLYRPHLAS----------------EKVYTIMYSCWHEKADERPTFKILLSN 254

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ E++ +  L           +  ++ E+CK +   ++YL  +   +H DL   N L+
Sbjct: 76  IITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLV 133

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 23/175 (13%), Positives = 39/175 (22%), Gaps = 50/175 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 179
                L       K+ DFG A          ++       ++ APE +    Y+   D+W
Sbjct: 191 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVW 250

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S+    +E+ +         G          A   +LI    +                 
Sbjct: 251 SYGILLWEIFSL--------GVNPYPGIPVDANFYKLIQNGFK----------------- 285

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                                        E    +     F   KRP+       
Sbjct: 286 --------------------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 4   EFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           E   ++  RL +      L    +      +  G+++L      +H DL   N+L+
Sbjct: 143 EIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE-FKSCVHRDLAARNVLV 197

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVILRAGYSFSVDMW 179
               CL G +M  K+ DFG +         +          +  PE I    Y+   D+W
Sbjct: 167 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVW 226

Query: 180 SFACTAFELATG 191
           ++    +E+ + 
Sbjct: 227 AYGVVLWEIFSY 238

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
             L     S    +       L   +   I + +  G+ YL      +H DL   N L+
Sbjct: 116 CSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLV 173

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 7e-07
 Identities = 26/178 (14%), Positives = 45/178 (25%), Gaps = 55/178 (30%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ------TRQYRAPEVILRAGYSFSVDM 178
                L       K+ DFG      +     +          + APE +    +S + D 
Sbjct: 138 AARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDT 197

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           W F  T +E+ T                           G+ P            +   +
Sbjct: 198 WMFGVTLWEMFTY--------------------------GQEP------------WIGLN 219

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETD--AREFAEFLVPLLDFTPEKRPTAQQCLQH 294
           G            L ++  +  R    +   ++    +V      PE RPT       
Sbjct: 220 GS---------QILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           MV E      L            L  +      +  G+ YL      IH DL   N+LL
Sbjct: 87  MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE-SKRFIHRDLAARNLLL 144

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 25/187 (13%), Positives = 49/187 (26%), Gaps = 50/187 (26%)

Query: 125 KPERCLDGIDMRCKVVDFGNA--CRANKQFAEEIQTRQYRAPEVILRAGYSFSVDMWSFA 182
                L G +   K+ DFG +       +        ++ A E +  + Y+ + D+WS+ 
Sbjct: 154 AARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYG 213

Query: 183 CTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLK 242
              +E+ +                    A + E + +  R                    
Sbjct: 214 VLLWEIVSLGGTP---------YCGMTCAELYEKLPQGYR-------------------- 244

Query: 243 RIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH--PWLSLR 300
                                     E  + +       P +RP+  Q L      L  R
Sbjct: 245 -----------------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 287

Query: 301 NSTRDET 307
            +  + T
Sbjct: 288 KTYVNTT 294

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 17  SRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           S    L   ++      +  G+DYL  +   IH DL   NIL+
Sbjct: 119 STASTLSSQQLLHFAADVARGMDYLS-QKQFIHRDLAARNILV 160

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 18/78 (23%)

Query: 1   MVLEFL-GDSLLRLIKYSRYK----------------GLELNKVREICKYILTGLDYLHR 43
           ++ E+     LL  ++  R                   L+L  +      +  G+ +L  
Sbjct: 104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA- 162

Query: 44  ELGIIHTDLKPENILLVS 61
               IH DL   NILL  
Sbjct: 163 SKNCIHRDLAARNILLTH 180

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 30/174 (17%), Positives = 48/174 (27%), Gaps = 50/174 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ-----YRAPEVILRAGYSFSVDMW 179
                L       K+ DFG A          ++        + APE I    Y+F  D+W
Sbjct: 172 AARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW 231

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           S+    +EL +         G          +   ++I +  R +               
Sbjct: 232 SYGIFLWELFSL--------GSSPYPGMPVDSKFYKMIKEGFRML--------------- 268

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
                                   E    E  + +    D  P KRPT +Q +Q
Sbjct: 269 ----------------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           +++E      LR     R   L+L  +      + T L YL      +H D+   N+L+
Sbjct: 84  IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-SKRFVHRDIAARNVLV 141

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 50/174 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ----TRQYRAPEVILRAGYSFSVDMWS 180
                L   +   K+ DFG +         +        ++ APE I    ++ + D+W 
Sbjct: 135 AARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWM 194

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F    +E+                             G  P +    G ++ D   R  +
Sbjct: 195 FGVCMWEILMH--------------------------GVKPFQ----GVKNNDVIGRIEN 224

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
            +R+                             +     + P +RP   +    
Sbjct: 225 GERLPMPPNCP----------------PTLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 32/173 (18%), Positives = 50/173 (28%), Gaps = 50/173 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRAN----KQFAEEIQTRQYRAPEVILRAGYSFSVDMWS 180
               CL G +   KV DFG +           A      ++ APE +    +S   D+W+
Sbjct: 142 AARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWA 201

Query: 181 FACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGD 240
           F    +E+AT  M   P            L+ + EL+ K  R                  
Sbjct: 202 FGVLLWEIATYGMSPYP---------GIDLSQVYELLEKDYR------------------ 234

Query: 241 LKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
                                  E    +  E +     + P  RP+  +  Q
Sbjct: 235 -------------------MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 7   GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
             +LL  ++    + +    +  +   I + ++YL +    IH DL   N L+
Sbjct: 97  YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK-KNFIHRDLAARNCLV 148

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 24/175 (13%), Positives = 43/175 (24%), Gaps = 52/175 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNAC------RANKQFAEEIQTRQYRAPEVILRAGYSFSVDM 178
                L   ++ CKV DFG +        A    +      ++ APE I    ++ + D+
Sbjct: 137 AARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDV 196

Query: 179 WSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH 238
           WSF    +E+ T                E     +M+ I    R                
Sbjct: 197 WSFGIVMWEVMTYGERP---------YWELSNHEVMKAINDGFR---------------- 231

Query: 239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ 293
                                            + ++        +RP     + 
Sbjct: 232 ---------------------LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS 265

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ E++ +  L      +     + ++  + + I  G+ YL   +  +H DL   NIL+
Sbjct: 86  IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN-MNYVHRDLAARNILV 143

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 62/191 (32%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ--------YRAPEVILRAGYSFSV 176
                L   ++ CKV DFG +       ++   T          + APE I    ++ + 
Sbjct: 155 AARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS 214

Query: 177 DMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD 236
           D+WS+    +E+ +         G+    D  +  + +  I +  R              
Sbjct: 215 DVWSYGIVMWEVMSY--------GERPYWDMTNQDV-INAIEQDYR-------------- 251

Query: 237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------ 290
                                              + ++         RP   Q      
Sbjct: 252 -----------------------LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLD 288

Query: 291 -CLQHPWLSLR 300
             +++P  SL+
Sbjct: 289 KMIRNPN-SLK 298

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 1   MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           ++ EF+ +  L            + ++  + + I  G+ YL   +  +H DL   NIL+
Sbjct: 104 IITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLAD-MNYVHRDLAARNILV 161

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-06
 Identities = 26/175 (14%), Positives = 45/175 (25%), Gaps = 50/175 (28%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQ-----TRQYRAPEVILRAGYSFSVDMW 179
                L       K+ DFG A    K      +       ++ APE I    Y+   D+W
Sbjct: 161 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVW 220

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           SF    +E+ +      P                   + +  R                 
Sbjct: 221 SFGVLLWEIFSLGASPYP--------GVKIDEEFCRRLKEGTR----------------- 255

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
                                R  +    E  + ++      P +RPT  + ++H
Sbjct: 256 --------------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 22  LELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           L L  +      +  G+++L      IH DL   NILL
Sbjct: 131 LTLEHLICYSFQVAKGMEFLA-SRKCIHRDLAARNILL 167

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 51/175 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEE-----IQTRQYRAPEVILRAGYSFSVDMW 179
                L   D   K+ DFG A   +     +         ++ APE +    Y+   D+W
Sbjct: 162 AARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVW 221

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           SF    +E+ T                           G  P      G   ++ F    
Sbjct: 222 SFGVLLWEIFTL--------------------------GGSP----YPGVPVEELFKLLK 251

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
           +  R+ +    +                 E    +       P +RPT +Q ++ 
Sbjct: 252 EGHRMDKPSNCT----------------NELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 16/74 (21%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKGLEL--------------NKVREICKYILTGLDYLHREL 45
           +++E+    +L   ++  R  GLE                 +      +  G++YL    
Sbjct: 96  VIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA-SK 154

Query: 46  GIIHTDLKPENILL 59
             IH DL   N+L+
Sbjct: 155 KCIHRDLAARNVLV 168

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 51/175 (29%)

Query: 125 KPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR-----QYRAPEVILRAGYSFSVDMW 179
               C+   D   K+ DFG      +        +     ++ +PE +    ++   D+W
Sbjct: 160 AARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVW 219

Query: 180 SFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG 239
           SF    +E+AT                            + P +    G  ++       
Sbjct: 220 SFGVVLWEIATL--------------------------AEQPYQ----GLSNEQVLRFVM 249

Query: 240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH 294
           +   + +                         E +     + P+ RP+  + +  
Sbjct: 250 EGGLLDKPDNCP----------------DMLFELMRMCWQYNPKMRPSFLEIISS 288

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 1   MVLEFL-GDSLLRLIKYSRYKG--------LELNKVREICKYILTGLDYLHRELGIIHTD 51
           +++E +    L   ++  R             L+K+ ++   I  G+ YL+     +H D
Sbjct: 100 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRD 158

Query: 52  LKPENILL 59
           L   N ++
Sbjct: 159 LAARNCMV 166

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 10  LLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILL 59
           L+ LI       + +    E+   IL  +   +   GI+H DL   N+L+
Sbjct: 88  LMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVLV 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.98
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.97
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.97
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.39
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.96
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	85.34
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	84.65
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	84.13
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	81.22

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=301.26  Aligned_cols=208  Identities=27%  Similarity=0.455  Sum_probs=162.7

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ++||+|++.+..+........+++..++.++.||+.||+|||++ ||+||||||+|||+.                    
T Consensus        92 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~-~ivHrDiKp~NILi~--------------------  150 (305)
T d1blxa_          92 LVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH-RVVHRDLKPQNILVT--------------------  150 (305)
T ss_dssp             EEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC-CEEecCCCccEEEEc--------------------
Confidence            57999955545455544556799999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~~  158 (329)
                                                                          ....++|+|||.+....  .......||
T Consensus       151 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~gT  178 (305)
T d1blxa_         151 ----------------------------------------------------SSGQIKLADFGLARIYSFQMALTSVVVT  178 (305)
T ss_dssp             ----------------------------------------------------TTCCEEECSCCSCCCCCGGGGGCCCCCC
T ss_pred             ----------------------------------------------------CCCCeeecchhhhhhhcccccCCCcccC
Confidence                                                                34579999999985443  344567899


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC-ccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~  237 (329)
                      +.|+|||++.+.+|+.++||||+||++|+|++|.+||.+.      +..+++..|.+.+|.++...+...... ...+..
T Consensus       179 ~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  252 (305)
T d1blxa_         179 LWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS------SDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS  252 (305)
T ss_dssp             CTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCC
T ss_pred             hhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC------CHHHHHHHHHHhhCCCchhcccccccchhhhhcc
Confidence            9999999999999999999999999999999999999876      578899999999998776554322211 111111


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                      ....         ..       .......+..+.+||++||++||++||||+|+|+||||+++...
T Consensus       253 ~~~~---------~~-------~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~~~  302 (305)
T d1blxa_         253 KSAQ---------PI-------EKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLERC  302 (305)
T ss_dssp             CCCC---------CG-------GGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             cccc---------ch-------hhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCchhh
Confidence            1000         00       01223346789999999999999999999999999999988654

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-41  Score=301.25  Aligned_cols=176  Identities=24%  Similarity=0.439  Sum_probs=147.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++..++.++.||+.||+|||++ ||+||||||+|||++                   
T Consensus        83 ivmEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~-~ivHrDiKp~Nill~-------------------  140 (263)
T d2j4za1          83 LILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSK-RVIHRDIKPENLLLG-------------------  140 (263)
T ss_dssp             EEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-------------------
T ss_pred             EEEeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHC-Ceeeeeeccccceec-------------------
Confidence            589999 899999998763  499999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.+..... ......||
T Consensus       141 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~Gt  167 (263)
T d2j4za1         141 -----------------------------------------------------SAGELKIADFGWSVHAPSSRRTTLCGT  167 (263)
T ss_dssp             -----------------------------------------------------TTSCEEECCCCSCSCCCCCCCEETTEE
T ss_pred             -----------------------------------------------------CCCCEeecccceeeecCCCcccccCCC
Confidence                                                                 345799999999966543 34556789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      +.|+|||++.+.+|+.++|||||||++|+|++|..||.+.      +....+..+.                        
T Consensus       168 ~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~------~~~~~~~~i~------------------------  217 (263)
T d2j4za1         168 LDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN------TYQETYKRIS------------------------  217 (263)
T ss_dssp             GGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHH------------------------
T ss_pred             CcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC------CHHHHHHHHH------------------------
Confidence            9999999999999999999999999999999999999765      2233333221                        


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                        ......+...+.++.+||.+||+.||++|||++|+++||||+.
T Consensus       218 ------------------~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         218 ------------------RVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             ------------------TTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             ------------------cCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence                              1112234445678999999999999999999999999999975

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-42  Score=312.00  Aligned_cols=217  Identities=24%  Similarity=0.359  Sum_probs=146.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++..++.++.||+.||.|||++.||+||||||+|||+.                   
T Consensus        81 iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~-------------------  139 (322)
T d1s9ja_          81 ICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN-------------------  139 (322)
T ss_dssp             EEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEEC-------------------
T ss_pred             EEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeEC-------------------
Confidence            689999 899999998763  4999999999999999999999734899999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                           ....++|+|||.|..... .....+||
T Consensus       140 -----------------------------------------------------~~~~vkl~DFGla~~~~~~~~~~~~GT  166 (322)
T d1s9ja_         140 -----------------------------------------------------SRGEIKLCDFGVSGQLIDSMANSFVGT  166 (322)
T ss_dssp             -----------------------------------------------------TTCCEEECCCCCCHHHHHHTC---CCS
T ss_pred             -----------------------------------------------------CCCCEEEeeCCCccccCCCccccccCC
Confidence                                                                 345799999999965443 34556899


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcC---C-CCccc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGG---A-QSKDY  234 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~---~-~~~~~  234 (329)
                      +.|+|||++.+.+|+.++||||+||++|+|++|+.||.+..     ........+....|..........   . .....
T Consensus       167 ~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (322)
T d1s9ja_         167 RSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD-----AKELELMFGCQVEGDAAETPPRPRTPGRPLSSYG  241 (322)
T ss_dssp             SCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCC-----TTHHHHHC--------------------------
T ss_pred             ccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHHHHHHhcCCcccCCcccccccccccccc
Confidence            99999999999999999999999999999999999998753     233333334444443222110000   0 00000


Q ss_pred             cCccCchhhhccccccchhHHHhhhc-CC-ChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKY-RF-SETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .+.......     ............ .. ....+.++.|||.+||++||++||||+|+|+||||+..+
T Consensus       242 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~  305 (322)
T d1s9ja_         242 MDSRPPMAI-----FELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSD  305 (322)
T ss_dssp             ----CCCCH-----HHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             cccccchhH-----HHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCC
Confidence            000000000     000111111111 11 123467899999999999999999999999999998644

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=299.87  Aligned_cols=178  Identities=31%  Similarity=0.536  Sum_probs=145.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...   ++++..++.++.||+.||.|||++ ||+||||||+|||++                   
T Consensus        94 ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl~-------------------  150 (293)
T d1yhwa1          94 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSN-QVIHRDIKSDNILLG-------------------  150 (293)
T ss_dssp             EEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC-CCcccCCcHHHeEEC-------------------
Confidence            689999 89999988763   599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                           ....++|+|||++....   ......+
T Consensus       151 -----------------------------------------------------~~~~vkl~DFG~a~~~~~~~~~~~~~~  177 (293)
T d1yhwa1         151 -----------------------------------------------------MDGSVKLTDFGFCAQITPEQSKRSTMV  177 (293)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSTTCCBCCCC
T ss_pred             -----------------------------------------------------CCCcEeeccchhheeeccccccccccc
Confidence                                                                 34579999999996653   2345567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.      +....+..+... +.+                
T Consensus       178 gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~------~~~~~~~~~~~~-~~~----------------  234 (293)
T d1yhwa1         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE------NPLRALYLIATN-GTP----------------  234 (293)
T ss_dssp             SCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHHH-CSC----------------
T ss_pred             cCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC------CHHHHHHHHHhC-CCC----------------
Confidence            999999999999999999999999999999999999999765      333333333221 110                


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                            ....+...+..+.+||.+||+.||++|||++|+++||||+.
T Consensus       235 ----------------------~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         235 ----------------------ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI  275 (293)
T ss_dssp             ----------------------CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred             ----------------------CCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence                                  00112334678999999999999999999999999999974

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-40  Score=296.12  Aligned_cols=182  Identities=27%  Similarity=0.422  Sum_probs=148.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.|++.||+|||++ ||+||||||+||++.                   
T Consensus        85 ivmEy~~gg~L~~~~~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~NIll~-------------------  142 (288)
T d1uu3a_          85 FGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGK-GIIHRDLKPENILLN-------------------  142 (288)
T ss_dssp             EEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEccCCCCHHHhhhcc--CCCCHHHHHHHHHHHHHHHHhhccc-cEEcCcCCccccccC-------------------
Confidence            689999 89999998876  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                           ....++|+|||.|.....     ....
T Consensus       143 -----------------------------------------------------~~~~vkl~DFG~a~~~~~~~~~~~~~~  169 (288)
T d1uu3a_         143 -----------------------------------------------------EDMHIQITDFGTAKVLSPESKQARANS  169 (288)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECC----------
T ss_pred             -----------------------------------------------------CCceEEecccccceecccCCccccccc
Confidence                                                                 345799999999965432     2344


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.      +....+..+.                    
T Consensus       170 ~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~------~~~~~~~~i~--------------------  223 (288)
T d1uu3a_         170 FVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG------NEYLIFQKII--------------------  223 (288)
T ss_dssp             CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH--------------------
T ss_pred             ccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc------CHHHHHHHHH--------------------
Confidence            57999999999999999999999999999999999999999865      2333333222                    


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHH------HhcCCCcCCCCCChh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ------CLQHPWLSLRNSTRD  305 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~e------ll~hpwf~~~~~~~~  305 (329)
                                            .....++...+..+.+||++||+.||++|||++|      +++||||..++|..-
T Consensus       224 ----------------------~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~~l  278 (288)
T d1uu3a_         224 ----------------------KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENL  278 (288)
T ss_dssp             ----------------------TTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTG
T ss_pred             ----------------------cCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHHHh
Confidence                                  1222234445678999999999999999999998      588999999987643

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=295.80  Aligned_cols=179  Identities=24%  Similarity=0.348  Sum_probs=141.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+|||++                   
T Consensus        80 ivmEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~ylH~~-~IiHrDiKp~NILl~-------------------  137 (271)
T d1nvra_          80 LFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYLHGI-GITHRDIKPENLLLD-------------------  137 (271)
T ss_dssp             EEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEC-------------------
T ss_pred             EEEeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHc-CCccCcccHHHEEEC-------------------
Confidence            689999 89999998754  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-----ccccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-----KQFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-----~~~~~  154 (329)
                                                                           ....++|+|||.|....     .....
T Consensus       138 -----------------------------------------------------~~~~~KL~DFG~a~~~~~~~~~~~~~~  164 (271)
T d1nvra_         138 -----------------------------------------------------ERDNLKISDFGLATVFRYNNRERLLNK  164 (271)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             -----------------------------------------------------CCCCEEEccchhheeeccCCccccccc
Confidence                                                                 24579999999996543     12345


Q ss_pred             CCCCCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .+||+.|+|||++.+..+ +.++||||+||++|+|++|.+||....     +.......+. .....             
T Consensus       165 ~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~-----~~~~~~~~~~-~~~~~-------------  225 (271)
T d1nvra_         165 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS-----DSCQEYSDWK-EKKTY-------------  225 (271)
T ss_dssp             CCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS-----TTSHHHHHHH-TTCTT-------------
T ss_pred             eeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC-----hHHHHHHHHh-cCCCC-------------
Confidence            689999999999998876 678999999999999999999997652     1111111110 00000             


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                .......+.++.+||++||+.||++|||++|+++||||+.
T Consensus       226 --------------------------~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         226 --------------------------LNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK  265 (271)
T ss_dssp             --------------------------STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTC
T ss_pred             --------------------------CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCc
Confidence                                      0001223568899999999999999999999999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-40  Score=296.99  Aligned_cols=207  Identities=29%  Similarity=0.433  Sum_probs=159.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |+++..+....  ..+++..++.++.||+.||+|||++ ||+||||||+||++                    
T Consensus        77 ivmE~~~~~~~~~~~~~~--~~l~~~~~~~~~~qil~aL~~lH~~-~iiHrDiKp~NIli--------------------  133 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH-WILHRDLKPNNLLL--------------------  133 (299)
T ss_dssp             EEEECCSEEHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEE--------------------
T ss_pred             ehhhhhcchHHhhhhhcc--cCCCHHHHHHHHHHHHHHHHHhhcc-ceecccCCcceEEe--------------------
Confidence            689999 66655554433  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                          +....++|+|||.+.....   .....+
T Consensus       134 ----------------------------------------------------~~~~~~KL~DFG~a~~~~~~~~~~~~~~  161 (299)
T d1ua2a_         134 ----------------------------------------------------DENGVLKLADFGLAKSFGSPNRAYTHQV  161 (299)
T ss_dssp             ----------------------------------------------------CTTCCEEECCCGGGSTTTSCCCCCCCSC
T ss_pred             ----------------------------------------------------cCCCccccccCccccccCCCccccccee
Confidence                                                                3346799999999965543   334457


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      ||+.|+|||++.+. .|+.++||||+||++|+|++|.+||.+.      .+.+++..|.+.+|.++...+........+.
T Consensus       162 gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~------~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~  235 (299)
T d1ua2a_         162 VTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD------SDLDQLTRIFETLGTPTEEQWPDMCSLPDYV  235 (299)
T ss_dssp             CCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCTTTSSSTTSSTTCC
T ss_pred             cChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCC------CHHHHHHHHHHhcCCCChhhccchhccchhh
Confidence            89999999999765 5899999999999999999999999876      5788999999999988766543332221111


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      .. ...      ....+..+       ....+.++.+||.+||++||++||||.|+|+||||+....
T Consensus       236 ~~-~~~------~~~~~~~~-------~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~  288 (299)
T d1ua2a_         236 TF-KSF------PGIPLHHI-------FSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPG  288 (299)
T ss_dssp             CC-CCC------CCCCHHHH-------CTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSC
T ss_pred             hh-ccC------CCCChHHh-------cccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCC
Confidence            10 000      01111222       1223568999999999999999999999999999987644

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4e-40  Score=298.73  Aligned_cols=185  Identities=28%  Similarity=0.450  Sum_probs=137.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        84 lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~-~iiHrDiKp~Nil~~~~-----------------  143 (307)
T d1a06a_          84 LIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLHDL-GIVHRDLKPENLLYYSL-----------------  143 (307)
T ss_dssp             EEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEESSS-----------------
T ss_pred             EEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhhhc-eeeeEEecccceeeccc-----------------
Confidence            689999 89999999865  4599999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||++.....  .....+|
T Consensus       144 ----------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~~~~~G  171 (307)
T d1a06a_         144 ----------------------------------------------------DEDSKIMISDFGLSKMEDPGSVLSTACG  171 (307)
T ss_dssp             ----------------------------------------------------STTCCEEECCC-----------------
T ss_pred             ----------------------------------------------------CCCceEEEeccceeEEccCCCeeeeeee
Confidence                                                                2245799999999965542  3345679


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.      ........+...--.++                
T Consensus       172 T~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~------~~~~~~~~i~~~~~~~~----------------  229 (307)
T d1a06a_         172 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE------NDAKLFEQILKAEYEFD----------------  229 (307)
T ss_dssp             -CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHTTCCCCC----------------
T ss_pred             CccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC------CHHHHHHHHhccCCCCC----------------
Confidence            99999999999999999999999999999999999999765      23333333321100000                


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                            .+.....+.++.+||.+||+.||++|||++|+++||||+...
T Consensus       230 ----------------------~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  271 (307)
T d1a06a_         230 ----------------------SPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDT  271 (307)
T ss_dssp             ----------------------TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSSC
T ss_pred             ----------------------CccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence                                  001223467899999999999999999999999999998643

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-40  Score=292.37  Aligned_cols=178  Identities=26%  Similarity=0.422  Sum_probs=140.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCC--ccccCCCCCceeeecCCCCCCCCCCCCCCCc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELG--IIHTDLKPENILLVSTIDPSKDPIRSGLTPI   77 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~g--iiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~   77 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||++ |  |+||||||+|||+..                
T Consensus        89 ivmE~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~----------------  149 (270)
T d1t4ha_          89 LVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITG----------------  149 (270)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESS----------------
T ss_pred             EEEeCCCCCcHHHHHhcc--ccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeC----------------
Confidence            589999 89999999876  3599999999999999999999995 8  999999999999932                


Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCC
Q 020248           78 LERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEI  156 (329)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~  156 (329)
                                                                             ....++|+|||++..... .....+
T Consensus       150 -------------------------------------------------------~~~~~Kl~DFGla~~~~~~~~~~~~  174 (270)
T d1t4ha_         150 -------------------------------------------------------PTGSVKIGDLGLATLKRASFAKAVI  174 (270)
T ss_dssp             -------------------------------------------------------TTSCEEECCTTGGGGCCTTSBEESC
T ss_pred             -------------------------------------------------------CCCCEEEeecCcceeccCCccCCcc
Confidence                                                                   134799999999965443 334568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+ +++.++|||||||++|+|++|..||...      .+...+...+. -|..|..             
T Consensus       175 GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~------~~~~~~~~~i~-~~~~~~~-------------  233 (270)
T d1t4ha_         175 GTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC------QNAAQIYRRVT-SGVKPAS-------------  233 (270)
T ss_dssp             SSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC------SSHHHHHHHHT-TTCCCGG-------------
T ss_pred             cCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc------ccHHHHHHHHH-cCCCCcc-------------
Confidence            9999999998865 5999999999999999999999999764      22222211110 0111110             


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                               .+...++++.+||.+||+.||++|||++|+++||||+
T Consensus       234 -------------------------~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         234 -------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             -------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             -------------------------cCccCCHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence                                     1122345789999999999999999999999999995

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-40  Score=294.61  Aligned_cols=180  Identities=28%  Similarity=0.469  Sum_probs=144.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... +++++..++.++.||+.||.|||++ ||+||||||+|||++                   
T Consensus        86 lvmEy~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~-~ivHrDiKp~NIll~-------------------  144 (288)
T d2jfla1          86 ILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDN-KIIHRDLKAGNILFT-------------------  144 (288)
T ss_dssp             EEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-CEEEeecChhheeEC-------------------
Confidence            689999 999999877543 4699999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||+|.....   ......
T Consensus       145 -----------------------------------------------------~~~~~Kl~DFG~a~~~~~~~~~~~~~~  171 (288)
T d2jfla1         145 -----------------------------------------------------LDGDIKLADFGVSAKNTRTIQRRDSFI  171 (288)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECHHHHHHHTCCC
T ss_pred             -----------------------------------------------------CCCCEEEEechhhhccCCCcccccccc
Confidence                                                                 345799999999865442   234568


Q ss_pred             CCCCCcchHHhh-----cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          157 QTRQYRAPEVIL-----RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       157 ~~~~y~aPE~~~-----~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ||+.|+|||++.     +..|+.++|||||||++|+|++|..||.+.      +....+..+..  +..|          
T Consensus       172 Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~------~~~~~~~~i~~--~~~~----------  233 (288)
T d2jfla1         172 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL------NPMRVLLKIAK--SEPP----------  233 (288)
T ss_dssp             SCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS------CGGGHHHHHHH--SCCC----------
T ss_pred             cccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC------CHHHHHHHHHc--CCCC----------
Confidence            999999999985     446899999999999999999999999765      23333333321  1100          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                 ....+...+.++.+||++||+.||++|||++|+++||||+.
T Consensus       234 ---------------------------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~  274 (288)
T d2jfla1         234 ---------------------------TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTV  274 (288)
T ss_dssp             ---------------------------CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCC
T ss_pred             ---------------------------CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCC
Confidence                                       00112334678999999999999999999999999999985

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.4e-40  Score=302.06  Aligned_cols=187  Identities=26%  Similarity=0.428  Sum_probs=150.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+|||+...                 
T Consensus       100 ivmE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHrDiKp~NIll~~~-----------------  160 (350)
T d1koaa2         100 MIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN-NYVHLDLKPENIMFTTK-----------------  160 (350)
T ss_dssp             EEECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESST-----------------
T ss_pred             EEEEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhc-CCeeeeechhHeeeccC-----------------
Confidence            689999 899999986543 4599999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||++.....  ......|
T Consensus       161 -----------------------------------------------------~~~~vkL~DFG~a~~~~~~~~~~~~~g  187 (350)
T d1koaa2         161 -----------------------------------------------------RSNELKLIDFGLTAHLDPKQSVKVTTG  187 (350)
T ss_dssp             -----------------------------------------------------TSCCEEECCCTTCEECCTTSCEEEECS
T ss_pred             -----------------------------------------------------CCCeEEEeecchheecccccccceecC
Confidence                                                                 134799999999966543  3334688


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+.+|+.++|||||||++|+|++|..||.+.      +..+.+..+......++..              
T Consensus       188 T~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~--------------  247 (350)
T d1koaa2         188 TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE------NDDETLRNVKSCDWNMDDS--------------  247 (350)
T ss_dssp             CTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCSCCG--------------
T ss_pred             cccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCCcc--------------
Confidence            99999999999999999999999999999999999999765      3445555554322221110              


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNST  303 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~  303 (329)
                                              .....+..+.+||.+||++||++|||++|+++||||+..++.
T Consensus       248 ------------------------~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~~  289 (350)
T d1koaa2         248 ------------------------AFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  289 (350)
T ss_dssp             ------------------------GGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTCC
T ss_pred             ------------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence                                    011235688999999999999999999999999999977654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=299.97  Aligned_cols=215  Identities=31%  Similarity=0.505  Sum_probs=168.9

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      |||||||.+|..++...   .+++..++.++.||+.||.|||++ ||+||||||+|||+                     
T Consensus       100 lv~e~~~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~-~IiHrDiKp~NIL~---------------------  154 (346)
T d1cm8a_         100 LVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAA-GIIHRDLKPGNLAV---------------------  154 (346)
T ss_dssp             EEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEE---------------------
T ss_pred             EEEecccccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhC-CCcccccCcchhhc---------------------
Confidence            58999999999888753   499999999999999999999995 99999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                         +....++++|||.+.......+..++|+.
T Consensus       155 ---------------------------------------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~  183 (346)
T d1cm8a_         155 ---------------------------------------------------NEDCELKILDFGLARQADSEMTGYVVTRW  183 (346)
T ss_dssp             ---------------------------------------------------CTTCCEEECCCTTCEECCSSCCSSCSCGG
T ss_pred             ---------------------------------------------------ccccccccccccceeccCCcccccccccc
Confidence                                                               33567899999999888887788899999


Q ss_pred             CcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          161 YRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       161 y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      |+|||++.+. .++.++||||+||++|+|++|.+||.+.      +....+..+....|.+|.+++............. 
T Consensus       184 y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  256 (346)
T d1cm8a_         184 YRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS------DHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMK-  256 (346)
T ss_dssp             GCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHH-
T ss_pred             ccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC------ChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhc-
Confidence            9999999875 5799999999999999999999999877      6788999999999999988875443322110000 


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDETK  308 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~~  308 (329)
                         .........+..       .....+..+.|||++||++||++||||.|||+||||+....+.++.+
T Consensus       257 ---~~~~~~~~~~~~-------~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~~~~~~~  315 (346)
T d1cm8a_         257 ---GLPELEKKDFAS-------ILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDEPQ  315 (346)
T ss_dssp             ---HSCCCCCCCGGG-------TCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC------C
T ss_pred             ---cCCcccccchHH-------hccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCCcccccc
Confidence               000000001111       12234678899999999999999999999999999998876555433

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-39  Score=296.00  Aligned_cols=181  Identities=27%  Similarity=0.422  Sum_probs=153.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|..++....  .+++..++.++.||+.||+|||++ ||+||||||+|||+                    
T Consensus        81 ivmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NILl--------------------  137 (316)
T d1fota_          81 MIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSK-DIIYRDLKPENILL--------------------  137 (316)
T ss_dssp             EEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEE--------------------
T ss_pred             eEeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccC-cEEccccCchheeE--------------------
Confidence            589999 899999988874  489999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          +....++|+|||.|..........+||+
T Consensus       138 ----------------------------------------------------~~~g~vkL~DFG~a~~~~~~~~~~~Gt~  165 (316)
T d1fota_         138 ----------------------------------------------------DKNGHIKITDFGFAKYVPDVTYTLCGTP  165 (316)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCSSCEECSSCBCCCCSCT
T ss_pred             ----------------------------------------------------cCCCCEEEecCccceEeccccccccCcc
Confidence                                                                3346799999999988777777889999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+.+|+.++|||||||++|+|++|..||.+.      +....+..+.                         
T Consensus       166 ~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~------~~~~~~~~i~-------------------------  214 (316)
T d1fota_         166 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS------NTMKTYEKIL-------------------------  214 (316)
T ss_dssp             TTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHH-------------------------
T ss_pred             cccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc------CHHHHHHHHH-------------------------
Confidence            999999999999999999999999999999999999765      2333333222                         


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                       ......+...+.++.++|.+||+.||++|+     |++|+++||||++.+|..
T Consensus       215 -----------------~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i~~~~  267 (316)
T d1fota_         215 -----------------NAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEK  267 (316)
T ss_dssp             -----------------HCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHH
T ss_pred             -----------------cCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccCCHHH
Confidence                             222223444567899999999999999996     999999999999987654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-39  Score=297.07  Aligned_cols=181  Identities=27%  Similarity=0.446  Sum_probs=150.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++...  +.+++..++.++.||+.||+|||++ ||+||||||+|||+                    
T Consensus        82 iv~ey~~gg~L~~~~~~~--~~~~e~~~~~~~~qil~al~ylH~~-~iiHRDlKP~NILl--------------------  138 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSR-DVVYRDIKLENLML--------------------  138 (337)
T ss_dssp             EEEECCTTCBHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE--------------------
T ss_pred             cceeccCCCchhhhhhcc--cCCcHHHHHHHHHHHhhhhhhhhhc-CccccccCHHHeEe--------------------
Confidence            589999 99999999886  4599999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....++|+|||.|....   ......+
T Consensus       139 ----------------------------------------------------~~~g~vkl~DFG~a~~~~~~~~~~~~~~  166 (337)
T d1o6la_         139 ----------------------------------------------------DKDGHIKITDFGLCKEGISDGATMKTFC  166 (337)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCBCSCCTTCCBCCCE
T ss_pred             ----------------------------------------------------cCCCCEEEeecccccccccCCcccccce
Confidence                                                                335689999999996543   2345568


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+.+|+.++|||||||++|+|++|++||.+.      +.......+                       
T Consensus       167 GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~------~~~~~~~~i-----------------------  217 (337)
T d1o6la_         167 GTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ------DHERLFELI-----------------------  217 (337)
T ss_dssp             ECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHH-----------------------
T ss_pred             eCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCc------CHHHHHHHH-----------------------
Confidence            899999999999999999999999999999999999999875      222222222                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~  304 (329)
                                         ......++...+.++.+||++||++||++|++     +.|+++||||...++..
T Consensus       218 -------------------~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~  271 (337)
T d1o6la_         218 -------------------LMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQD  271 (337)
T ss_dssp             -------------------HHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHH
T ss_pred             -------------------hcCCCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcCcccccCCHHH
Confidence                               12222344555778999999999999999994     89999999999876543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-39  Score=290.69  Aligned_cols=189  Identities=30%  Similarity=0.498  Sum_probs=148.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++....                
T Consensus        90 iv~E~~~gg~L~~~i~~~--~~l~~~~~~~~~~qi~~al~yLH~~-~ivHrDiKp~Nill~~~~----------------  150 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYYLHSL-QIAHFDLKPENIMLLDRN----------------  150 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCSS----------------
T ss_pred             EEEEcCCCccccchhccc--cccchhHHHHHHHHHHHHHHhhhhc-ceeecccccceEEEecCC----------------
Confidence            689999 89999999876  3599999999999999999999995 999999999999994321                


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          .....++++|||.+....  .......+
T Consensus       151 ----------------------------------------------------~~~~~vkl~DfG~a~~~~~~~~~~~~~~  178 (293)
T d1jksa_         151 ----------------------------------------------------VPKPRIKIIDFGLAHKIDFGNEFKNIFG  178 (293)
T ss_dssp             ----------------------------------------------------SSSCCEEECCCTTCEECTTSCBCSCCCC
T ss_pred             ----------------------------------------------------CcccceEecchhhhhhcCCCccccccCC
Confidence                                                                113469999999996654  34455678


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..++.++||||+||++|+|++|..||.+.      +....+..+...-..++...             
T Consensus       179 t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~------~~~~~~~~i~~~~~~~~~~~-------------  239 (293)
T d1jksa_         179 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD------TKQETLANVSAVNYEFEDEY-------------  239 (293)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHTTCCCCCHHH-------------
T ss_pred             CCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC------CHHHHHHHHHhcCCCCCchh-------------
Confidence            99999999999999999999999999999999999999865      34444444432211111111             


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                               +...+..+.+||++||+.||++|||++|+++||||+..++..
T Consensus       240 -------------------------~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~~~~  281 (293)
T d1jksa_         240 -------------------------FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDTQQ  281 (293)
T ss_dssp             -------------------------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC-----
T ss_pred             -------------------------cCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCChhH
Confidence                                     112356889999999999999999999999999998766443

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-39  Score=300.05  Aligned_cols=183  Identities=26%  Similarity=0.394  Sum_probs=154.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||+ |++|..++....  .+++..++.++.||+.||.|||++ |||||||||+|||++                   
T Consensus       118 ~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~-~iiHRDIKP~NILl~-------------------  175 (350)
T d1rdqe_         118 MVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSL-DLIYRDLKPENLLID-------------------  175 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             cccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CEecCcCCHHHcccC-------------------
Confidence            589999 899999998764  599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                           ....++|+|||++...........||+
T Consensus       176 -----------------------------------------------------~~g~ikL~DFG~a~~~~~~~~~~~Gt~  202 (350)
T d1rdqe_         176 -----------------------------------------------------QQGYIQVTDFGFAKRVKGRTWTLCGTP  202 (350)
T ss_dssp             -----------------------------------------------------TTSCEEECCCTTCEECSSCBCCCEECG
T ss_pred             -----------------------------------------------------CCCCEEeeeceeeeecccccccccCcc
Confidence                                                                 345799999999988877777788999


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccC
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHG  239 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  239 (329)
                      .|+|||++.+..|+.++|||||||++|+|++|..||.+.      +....+..+..                        
T Consensus       203 ~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~------~~~~~~~~i~~------------------------  252 (350)
T d1rdqe_         203 EALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD------QPIQIYEKIVS------------------------  252 (350)
T ss_dssp             GGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHH------------------------
T ss_pred             ccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc------CHHHHHHHHhc------------------------
Confidence            999999999999999999999999999999999999765      23333333321                        


Q ss_pred             chhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCChhh
Q 020248          240 DLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~~~  306 (329)
                                        .....+...+..+.+||++||+.||++|+     |++||++||||+..+|..-.
T Consensus       253 ------------------~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~  306 (350)
T d1rdqe_         253 ------------------GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIY  306 (350)
T ss_dssp             ------------------CCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHH
T ss_pred             ------------------CCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHHHHH
Confidence                              11223344567899999999999999995     99999999999998775543

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=9.6e-40  Score=301.53  Aligned_cols=185  Identities=29%  Similarity=0.456  Sum_probs=149.3

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+|||+..                  
T Consensus       103 ivmE~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~-~iiHRDiKp~NILl~~------------------  162 (352)
T d1koba_         103 LILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEH-SIVHLDIKPENIMCET------------------  162 (352)
T ss_dssp             EEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESS------------------
T ss_pred             EEEEcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-Ceeecccccccccccc------------------
Confidence            689999 899998776542 4599999999999999999999995 9999999999999942                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                          .....++|+|||+|.....  ......|
T Consensus       163 ----------------------------------------------------~~~~~vkL~DFGla~~~~~~~~~~~~~g  190 (352)
T d1koba_         163 ----------------------------------------------------KKASSVKIIDFGLATKLNPDEIVKVTTA  190 (352)
T ss_dssp             ----------------------------------------------------TTCCCEEECCCTTCEECCTTSCEEEECS
T ss_pred             ----------------------------------------------------cCCCeEEEeecccceecCCCCceeeccC
Confidence                                                                1235799999999976553  3344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||++.+..|+.++|||||||++|+|++|..||.+.      +....+..|......+|..              
T Consensus       191 t~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~------~~~~~~~~i~~~~~~~~~~--------------  250 (352)
T d1koba_         191 TAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE------DDLETLQNVKRCDWEFDED--------------  250 (352)
T ss_dssp             SGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS------SHHHHHHHHHHCCCCCCSS--------------
T ss_pred             cccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCCcc--------------
Confidence            99999999999999999999999999999999999999875      3444544443322221110              


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              .....+.++.+||.+||++||++|||++|+|+||||+...
T Consensus       251 ------------------------~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         251 ------------------------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             ------------------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             ------------------------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCCc
Confidence                                    1123356889999999999999999999999999998643

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-39  Score=289.59  Aligned_cols=177  Identities=27%  Similarity=0.425  Sum_probs=135.6

Q ss_pred             Cccccc-chhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCC-----ccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELG-----IIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~g-----iiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      |||||| |++|.+++...  ....+++..+..++.||+.||.|||++ |     |+||||||+||+++            
T Consensus        82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~~~~~~IiHrDiKp~NIll~------------  148 (269)
T d2java1          82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR-SDGGHTVLHRDLKPANVFLD------------  148 (269)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHH-CC---------CCGGGEEEC------------
T ss_pred             EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCCCCEEeCcCchhhcCcC------------
Confidence            589999 89999998754  235699999999999999999999985 6     99999999999993            


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  150 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--  150 (329)
                                                                                  ....++|+|||.+.....  
T Consensus       149 ------------------------------------------------------------~~~~vkl~DFG~a~~~~~~~  168 (269)
T d2java1         149 ------------------------------------------------------------GKQNVKLGDFGLARILNHDT  168 (269)
T ss_dssp             ------------------------------------------------------------TTSCEEECCHHHHHHC----
T ss_pred             ------------------------------------------------------------CCCcEEEeeccceeecccCC
Confidence                                                                        345799999999965543  


Q ss_pred             -ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCC
Q 020248          151 -QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGA  229 (329)
Q Consensus       151 -~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  229 (329)
                       ......||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.      +..+....+..  +.++        
T Consensus       169 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~------~~~~~~~~i~~--~~~~--------  232 (269)
T d2java1         169 SFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF------SQKELAGKIRE--GKFR--------  232 (269)
T ss_dssp             -------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHH--TCCC--------
T ss_pred             CccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC------CHHHHHHHHHc--CCCC--------
Confidence             234567899999999999999999999999999999999999999765      23333333221  1110        


Q ss_pred             CCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCc
Q 020248          230 QSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWL  297 (329)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf  297 (329)
                                                     ..+...+.++.+||++||+.||++|||++|+++|||+
T Consensus       233 -------------------------------~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         233 -------------------------------RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             -------------------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             -------------------------------CCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence                                           1233346789999999999999999999999999996

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-39  Score=289.37  Aligned_cols=212  Identities=27%  Similarity=0.463  Sum_probs=163.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||++++.+++......++++..++.++.||+.||+|||++ |||||||||+|||+.                    
T Consensus        78 iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~-~IiHrDiKpeNIl~~--------------------  136 (298)
T d1gz8a_          78 LVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH-RVLHRDLKPQNLLIN--------------------  136 (298)
T ss_dssp             EEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC--------------------
T ss_pred             EEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC-CEEccccCchheeec--------------------
Confidence            58999977777777766667799999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                          ....++|+|||.|.....   ......|
T Consensus       137 ----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~g  164 (298)
T d1gz8a_         137 ----------------------------------------------------TEGAIKLADFGLARAFGVPVRTYTHEVV  164 (298)
T ss_dssp             ----------------------------------------------------TTSCEEECSTTHHHHHCCCSBCTTCCBC
T ss_pred             ----------------------------------------------------ccCcceeccCCcceeccCCcccceeecc
Confidence                                                                345789999999965542   3344578


Q ss_pred             CCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.... ++.++|+||+||++|+|++|+.||.+.      +..+.+..+....|.+++..+........+..
T Consensus       165 t~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  238 (298)
T d1gz8a_         165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD------SEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKP  238 (298)
T ss_dssp             CCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             cceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC------CHHHHHHHHHHhcCCCchhhcccccccccccc
Confidence            99999999988765 589999999999999999999999876      57788889999988876555432211111111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      .....      ........       ....+.++.|||++||++||++|||+.|+++||||+.+..+.
T Consensus       239 ~~~~~------~~~~~~~~-------~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p~  293 (298)
T d1gz8a_         239 SFPKW------ARQDFSKV-------VPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPV  293 (298)
T ss_dssp             TSCCC------CCCCHHHH-------STTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             ccccc------cccchhhh-------ccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCCC
Confidence            11000      00011111       123357899999999999999999999999999999887653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-38  Score=293.15  Aligned_cols=235  Identities=42%  Similarity=0.816  Sum_probs=190.0

Q ss_pred             chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCCCCCCC
Q 020248            7 GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERPEGSIN   86 (329)
Q Consensus         7 g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (329)
                      +..............+++..++.++.||+.||+|||+..||+||||||+|||+.....                      
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~----------------------  164 (362)
T d1q8ya_         107 GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDS----------------------  164 (362)
T ss_dssp             CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEET----------------------
T ss_pred             ccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCc----------------------
Confidence            4555665665555679999999999999999999997459999999999999954210                      


Q ss_pred             CCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCCCcchHH
Q 020248           87 GGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQYRAPEV  166 (329)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~y~aPE~  166 (329)
                                                                  ......++++|||.+..........+|++.|+|||+
T Consensus       165 --------------------------------------------~~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~  200 (362)
T d1q8ya_         165 --------------------------------------------PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEV  200 (362)
T ss_dssp             --------------------------------------------TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHH
T ss_pred             --------------------------------------------ccccceeeEeecccccccccccccccccccccChhh
Confidence                                                        011246899999999877777778889999999999


Q ss_pred             hhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCccCchhhhcc
Q 020248          167 ILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRR  246 (329)
Q Consensus       167 ~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  246 (329)
                      +.+..++.++|+||+||++++|++|+.||............+.+..++..+|.+|..+.........+++..+.......
T Consensus       201 ~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (362)
T d1q8ya_         201 LLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK  280 (362)
T ss_dssp             HHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCC
T ss_pred             ccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhcccc
Confidence            99999999999999999999999999999887666666778899999999999999999888888888887776666666


Q ss_pred             ccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          247 LKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                      ...+................++.+.|||.+||++||++||||+|+|+||||++........
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~  341 (362)
T d1q8ya_         281 LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIR  341 (362)
T ss_dssp             CCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTCTTCC
T ss_pred             ccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCcccCC
Confidence            6666777777778888888999999999999999999999999999999999665444333

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-39  Score=298.93  Aligned_cols=186  Identities=24%  Similarity=0.362  Sum_probs=149.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..++.++.||+.||.|||++ ||+||||||+|||+                    
T Consensus        84 ivmE~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~aL~ylH~~-~iiHrDlKP~NILl--------------------  140 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNR-FVVYRDLKPANILL--------------------  140 (364)
T ss_dssp             EEECCCCSCBHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEE--------------------
T ss_pred             EEEEecCCCcHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHC-CccceeeccceeEE--------------------
Confidence            689999 89999999876  3489999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQT  158 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~  158 (329)
                                                                          +....++|+|||+|..... ......||
T Consensus       141 ----------------------------------------------------~~~g~iKl~DFGla~~~~~~~~~~~~GT  168 (364)
T d1omwa3         141 ----------------------------------------------------DEHGHVRISDLGLACDFSKKKPHASVGT  168 (364)
T ss_dssp             ----------------------------------------------------CSSSCEEECCCTTCEECSSSCCCSCCSC
T ss_pred             ----------------------------------------------------cCCCcEEEeeeceeeecCCCcccccccc
Confidence                                                                3345799999999975543 34556899


Q ss_pred             CCCcchHHhhc-CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          159 RQYRAPEVILR-AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~-~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      +.|+|||++.. ..|+.++|||||||++|+|++|..||.....      ... ..+.+...                   
T Consensus       169 ~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~------~~~-~~~~~~~~-------------------  222 (364)
T d1omwa3         169 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT------KDK-HEIDRMTL-------------------  222 (364)
T ss_dssp             GGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCS------SCH-HHHHHHSS-------------------
T ss_pred             cccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCH------HHH-HHHHHhcc-------------------
Confidence            99999999974 5799999999999999999999999976521      111 11111100                   


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcC-----HHHHhcCCCcCCCCCChhh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPT-----AQQCLQHPWLSLRNSTRDE  306 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t-----a~ell~hpwf~~~~~~~~~  306 (329)
                                         ......+...+.++.+||.+||+.||++|||     |.|+++||||+.++|..-.
T Consensus       223 -------------------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~  277 (364)
T d1omwa3         223 -------------------TMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVF  277 (364)
T ss_dssp             -------------------SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHH
T ss_pred             -------------------cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCCCHHHHh
Confidence                               1111233445678999999999999999999     7999999999998765443

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=291.72  Aligned_cols=213  Identities=26%  Similarity=0.433  Sum_probs=161.5

Q ss_pred             CcccccchhHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFLGDSLLRLIKYS--RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~--~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      ||||||++++.+.+...  ....+++..++.++.||+.||+|||++ ||+||||||+|||+...                
T Consensus        96 lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~-~IiHrDiKp~NILl~~~----------------  158 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF-GICHRDIKPQNLLLDPD----------------  158 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECTT----------------
T ss_pred             EEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCcceEEEecC----------------
Confidence            58999966655554432  234699999999999999999999995 99999999999999321                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEI  156 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~  156 (329)
                                                                             ...++|+|||.+....  ......+
T Consensus       159 -------------------------------------------------------~~~~kl~DFG~a~~~~~~~~~~~~~  183 (350)
T d1q5ka_         159 -------------------------------------------------------TAVLKLCDFGSAKQLVRGEPNVSYI  183 (350)
T ss_dssp             -------------------------------------------------------TCCEEECCCTTCEECCTTSCCCSCC
T ss_pred             -------------------------------------------------------CCceeEecccchhhccCCccccccc
Confidence                                                                   2368999999986543  3445568


Q ss_pred             CCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      |++.|+|||++.+. .++.++||||+||++|+|++|..||...      ...+++..|.+.+|.++.+.+..........
T Consensus       184 gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~------~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~  257 (350)
T d1q5ka_         184 CSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD------SGVDQLVEIIKVLGTPTREQIREMNPNYTEF  257 (350)
T ss_dssp             SCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS------SHHHHHHHHHHHHCCCCHHHHHHHCC---CC
T ss_pred             ccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC------CHHHHHHHHHHHhCCChHHhhhhhccchhhc
Confidence            89999999998864 6899999999999999999999999876      5788999999999998887775433221110


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                      ...    ...   .....+.      .....+.++.+||.+||++||++||||.|+|+||||+......
T Consensus       258 ~~~----~~~---~~~~~~~------~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~  313 (350)
T d1q5ka_         258 KFP----QIK---AHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPN  313 (350)
T ss_dssp             CCC----CCC---CCCGGGT------SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCTT
T ss_pred             ccc----ccc---cCchhhh------cccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccCCC
Confidence            000    000   0000011      1223467899999999999999999999999999999875443

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=298.61  Aligned_cols=190  Identities=28%  Similarity=0.388  Sum_probs=145.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.......+++..++.++.||+.||+|||+. ||+||||||+||++...                 
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~-~iiHRDiKp~NIll~~~-----------------  147 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI-NIAHRDVKPENLLYTSK-----------------  147 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEESCS-----------------
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCccccccccccccccc-----------------
Confidence            689999 89999999875556799999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                          .....++|+|||++....  .......|
T Consensus       148 ----------------------------------------------------~~~~~~Kl~DFG~a~~~~~~~~~~~~~g  175 (335)
T d2ozaa1         148 ----------------------------------------------------RPNAILKLTDFGFAKETTSHNSLTTPCY  175 (335)
T ss_dssp             ----------------------------------------------------STTCCEEECCCTTCEECCCCCCCCCCSC
T ss_pred             ----------------------------------------------------cccccccccccceeeeccCCCccccccC
Confidence                                                                123569999999996543  34455689


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      |+.|+|||++.+..|+.++|||||||++|+|++|++||.+....      .....+.....            ...    
T Consensus       176 t~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~------~~~~~~~~~i~------------~~~----  233 (335)
T d2ozaa1         176 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL------AISPGMKTRIR------------MGQ----  233 (335)
T ss_dssp             CCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------------CCC------------SCS----
T ss_pred             CcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHH------HHHHHHHHHHh------------cCC----
Confidence            99999999999999999999999999999999999999765311      11111110000            000    


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLR  300 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~  300 (329)
                       ..+.          .       ......+.++.+||++||++||++|||+.|+++||||...
T Consensus       234 -~~~~----------~-------~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  278 (335)
T d2ozaa1         234 -YEFP----------N-------PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  278 (335)
T ss_dssp             -SSCC----------T-------THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTT
T ss_pred             -CCCC----------C-------cccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCC
Confidence             0000          0       0011335789999999999999999999999999999753

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.6e-39  Score=289.80  Aligned_cols=179  Identities=30%  Similarity=0.392  Sum_probs=143.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|..++...  .++++..++.++.||+.||.|||++ ||+||||||+|||++.                  
T Consensus        92 iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yLH~~-~iiHrDiKp~NILl~~------------------  150 (309)
T d1u5ra_          92 LVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH-NMIHRDVKAGNILLSE------------------  150 (309)
T ss_dssp             EEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCSGGGEEEET------------------
T ss_pred             EEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhC-CEeccCCCcceEEECC------------------
Confidence            689999 88887666554  4599999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                            ...++|+|||.+...... ....||+
T Consensus       151 ------------------------------------------------------~~~~Kl~DFG~a~~~~~~-~~~~GT~  175 (309)
T d1u5ra_         151 ------------------------------------------------------PGLVKLGDFGSASIMAPA-NSFVGTP  175 (309)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCBSSSSB-CCCCSCG
T ss_pred             ------------------------------------------------------CCCEEEeecccccccCCC-CccccCc
Confidence                                                                  457999999999665443 4568999


Q ss_pred             CCcchHHhhc---CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          160 QYRAPEVILR---AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       160 ~y~aPE~~~~---~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      .|+|||++.+   ..|+.++|||||||++|+|++|..||.+.      .....+..+..  +..|.              
T Consensus       176 ~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~------~~~~~~~~i~~--~~~~~--------------  233 (309)
T d1u5ra_         176 YWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM------NAMSALYHIAQ--NESPA--------------  233 (309)
T ss_dssp             GGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS------CHHHHHHHHHH--SCCCC--------------
T ss_pred             cccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC------CHHHHHHHHHh--CCCCC--------------
Confidence            9999999975   35899999999999999999999999765      23333333321  11100              


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                                              ..+...+..+.+||++||+.||++|||++|+++||||....
T Consensus       234 ------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~~  274 (309)
T d1u5ra_         234 ------------------------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRER  274 (309)
T ss_dssp             ------------------------CSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             ------------------------CCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhCHHhcCCC
Confidence                                    01122356899999999999999999999999999998644

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=291.13  Aligned_cols=180  Identities=31%  Similarity=0.483  Sum_probs=149.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++....  .+++..++.++.||+.||+|||++ ||+||||||+|||+                    
T Consensus        80 ivmEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~-~iiHrDikp~NiL~--------------------  136 (320)
T d1xjda_          80 FVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSK-GIVYRDLKLDNILL--------------------  136 (320)
T ss_dssp             EEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCGGGEEE--------------------
T ss_pred             EEEeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCcccceee--------------------
Confidence            689999 899999998764  499999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc---cccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN---KQFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~---~~~~~~~  156 (329)
                                                                          +....++|+|||.+....   .......
T Consensus       137 ----------------------------------------------------~~~~~~kl~DFG~a~~~~~~~~~~~~~~  164 (320)
T d1xjda_         137 ----------------------------------------------------DKDGHIKIADFGMCKENMLGDAKTNTFC  164 (320)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCBCCCCTTCCBCCCC
T ss_pred             ----------------------------------------------------cCCCceeccccchhhhcccccccccccC
Confidence                                                                335689999999996543   2334567


Q ss_pred             CCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          157 QTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.      +....+..+.                      
T Consensus       165 gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~------~~~~~~~~i~----------------------  216 (320)
T d1xjda_         165 GTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ------DEEELFHSIR----------------------  216 (320)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHH----------------------
T ss_pred             CCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC------CHHHHHHHHH----------------------
Confidence            899999999999999999999999999999999999999865      2333333321                      


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHH-HHhcCCCcCCCCCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQ-QCLQHPWLSLRNST  303 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~-ell~hpwf~~~~~~  303 (329)
                                          ......+...+..+.+||++||+.||++|||+. |+++||||+++++.
T Consensus       217 --------------------~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~~~~  264 (320)
T d1xjda_         217 --------------------MDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWE  264 (320)
T ss_dssp             --------------------HCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHH
T ss_pred             --------------------cCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccCCHH
Confidence                                112223444567899999999999999999995 89999999987654

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=284.35  Aligned_cols=176  Identities=25%  Similarity=0.411  Sum_probs=142.5

Q ss_pred             Cccccc-c-hhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcc
Q 020248            1 MVLEFL-G-DSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPIL   78 (329)
Q Consensus         1 lV~e~~-g-~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~   78 (329)
                      +|||++ | +++.+++...  ..+++..++.++.||+.||+|||++ ||+||||||+||++...                
T Consensus        86 lv~e~~~~~~~l~~~~~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~iiHrDiKp~NIll~~~----------------  146 (273)
T d1xwsa_          86 LILERPEPVQDLFDFITER--GALQEELARSFFWQVLEAVRHCHNC-GVLHRDIKDENILIDLN----------------  146 (273)
T ss_dssp             EEEECCSSEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEETT----------------
T ss_pred             EEEEeccCcchHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC-CCccccCcccceEEecC----------------
Confidence            589998 4 6888888776  3599999999999999999999995 99999999999999431                


Q ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-ccccCCC
Q 020248           79 ERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-QFAEEIQ  157 (329)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~  157 (329)
                                                                             ...++|+|||.+..... ......|
T Consensus       147 -------------------------------------------------------~~~vkl~DFG~a~~~~~~~~~~~~G  171 (273)
T d1xwsa_         147 -------------------------------------------------------RGELKLIDFGSGALLKDTVYTDFDG  171 (273)
T ss_dssp             -------------------------------------------------------TTEEEECCCTTCEECCSSCBCCCCS
T ss_pred             -------------------------------------------------------CCeEEECccccceeccccccccccc
Confidence                                                                   34799999999965443 3455689


Q ss_pred             CCCCcchHHhhcCCC-CccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRAGY-SFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~-s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      |+.|+|||++.+..+ +.++||||+||++|+|++|..||...        .    .+                       
T Consensus       172 T~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~--------~----~i-----------------------  216 (273)
T d1xwsa_         172 TRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD--------E----EI-----------------------  216 (273)
T ss_dssp             CGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH--------H----HH-----------------------
T ss_pred             CCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc--------h----HH-----------------------
Confidence            999999999988765 67899999999999999999999643        0    11                       


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCCh
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~  304 (329)
                                         ......++...+.++.+||++||+.||++|||++|+++||||+....+.
T Consensus       217 -------------------~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~~p~  265 (273)
T d1xwsa_         217 -------------------IRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQ  265 (273)
T ss_dssp             -------------------HHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCCHH
T ss_pred             -------------------hhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCCCCC
Confidence                               1111112333467899999999999999999999999999999865433

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=7.5e-38  Score=279.70  Aligned_cols=180  Identities=30%  Similarity=0.464  Sum_probs=144.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..++++.++.++.||+.||+|||++ ||+||||||+||+++                   
T Consensus        87 ivmE~~~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~~lH~~-~ivHrDlkp~Nill~-------------------  144 (277)
T d1phka_          87 LVFDLMKKGELFDYLTEK--VTLSEKETRKIMRALLEVICALHKL-NIVHRDLKPENILLD-------------------  144 (277)
T ss_dssp             EEEECCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-------------------
T ss_pred             EEEEcCCCchHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHc-CCcccccccceEEEc-------------------
Confidence            689999 89999999875  4599999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......|
T Consensus       145 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~g  171 (277)
T d1phka_         145 -----------------------------------------------------DDMNIKLTDFGFSCQLDPGEKLREVCG  171 (277)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCTTCCBCCCCS
T ss_pred             -----------------------------------------------------CCCCeEEccchheeEccCCCceeeeec
Confidence                                                                 345799999999966543  3455678


Q ss_pred             CCCCcchHHhhc------CCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          158 TRQYRAPEVILR------AGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       158 ~~~y~aPE~~~~------~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      |+.|+|||++.+      ..++.++||||+||++|+|++|..||.+.      +.......+..---.++          
T Consensus       172 t~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~------~~~~~~~~i~~~~~~~~----------  235 (277)
T d1phka_         172 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR------KQMLMLRMIMSGNYQFG----------  235 (277)
T ss_dssp             CGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHTCCCCC----------
T ss_pred             cCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCC------CHHHHHHHHHhCCCCCC----------
Confidence            999999999863      34788999999999999999999999865      33333333321100000          


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                  .......++++.+||.+||+.||++|||++|+++||||+.
T Consensus       236 ----------------------------~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         236 ----------------------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             ----------------------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             ----------------------------CcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence                                        0011234678999999999999999999999999999985

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-38  Score=287.59  Aligned_cols=183  Identities=27%  Similarity=0.414  Sum_probs=147.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..++.++.||+.||.|||++ ||+||||||+||++...                 
T Consensus        78 lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~-~iiHrDlKp~NIll~~~-----------------  138 (321)
T d1tkia_          78 MIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSH-NIGHFDIRPENIIYQTR-----------------  138 (321)
T ss_dssp             EEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESSS-----------------
T ss_pred             EEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHc-CCCcccccccceeecCC-----------------
Confidence            689999 899999997643 3599999999999999999999995 99999999999999431                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--ccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--QFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--~~~~~~~  157 (329)
                                                                           ....++|+|||.+.....  ......+
T Consensus       139 -----------------------------------------------------~~~~ikl~DFG~~~~~~~~~~~~~~~~  165 (321)
T d1tkia_         139 -----------------------------------------------------RSSTIKIIEFGQARQLKPGDNFRLLFT  165 (321)
T ss_dssp             -----------------------------------------------------SCCCEEECCCTTCEECCTTCEEEEEES
T ss_pred             -----------------------------------------------------CceEEEEcccchhhccccCCccccccc
Confidence                                                                 234789999999865442  3344578


Q ss_pred             CCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCc
Q 020248          158 TRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDR  237 (329)
Q Consensus       158 ~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  237 (329)
                      ++.|+|||.+.+..|+.++||||+||++|+|++|..||.+.      +..+.+..|...--.+|...+            
T Consensus       166 t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~------~~~~~~~~i~~~~~~~~~~~~------------  227 (321)
T d1tkia_         166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE------TNQQIIENIMNAEYTFDEEAF------------  227 (321)
T ss_dssp             CGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS------SHHHHHHHHHHTCCCCCHHHH------------
T ss_pred             ccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC------CHHHHHHHHHhCCCCCChhhc------------
Confidence            89999999999999999999999999999999999999875      344455544432222221111            


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                                                ...+.++.+||++||+.||++|||++|+++||||+.
T Consensus       228 --------------------------~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~  263 (321)
T d1tkia_         228 --------------------------KEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQ  263 (321)
T ss_dssp             --------------------------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHS
T ss_pred             --------------------------cCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcc
Confidence                                      123567899999999999999999999999999974

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-37  Score=277.78  Aligned_cols=206  Identities=28%  Similarity=0.463  Sum_probs=152.4

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||++++.+...+.... ..+++..++.++.||+.||+|||+ .||+||||||+|||+                     
T Consensus        77 i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~-~~IvHrDiKp~NIll---------------------  133 (286)
T d1ob3a_          77 LVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHD-RRVLHRDLKPQNLLI---------------------  133 (286)
T ss_dssp             EEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEE---------------------
T ss_pred             EEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHhcc-CcEEecCCCCceeeE---------------------
Confidence            578999555554444332 569999999999999999999999 599999999999999                     


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEIQ  157 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~~  157 (329)
                                                                         .....++++|||.+.....   ......+
T Consensus       134 ---------------------------------------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~  162 (286)
T d1ob3a_         134 ---------------------------------------------------NREGELKIADFGLARAFGIPVRKYTHEIV  162 (286)
T ss_dssp             ---------------------------------------------------CTTSCEEECCTTHHHHHCC---------C
T ss_pred             ---------------------------------------------------cCCCCEEecccccceecccCccccceecc
Confidence                                                               3346799999999965443   2334467


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccC
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFD  236 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  236 (329)
                      ++.|+|||.+.+. .++.++||||+||++|+|++|++||.+.      +..+++..+...+|.++...+........+..
T Consensus       163 ~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  236 (286)
T d1ob3a_         163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV------SEADQLMRIFRILGTPNSKNWPNVTELPKYDP  236 (286)
T ss_dssp             CCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCT
T ss_pred             cchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC------CHHHHHHHHHHhhCCCChhhccchhhhhhccc
Confidence            8899999999865 5799999999999999999999999876      57888899999999877555432211111111


Q ss_pred             ccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          237 RHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      ........             .........+..+.|||++||++||++|||+.|+++||||++
T Consensus       237 ~~~~~~~~-------------~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         237 NFTVYEPL-------------PWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             TCCCCCCC-------------CGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             ccccccCc-------------chhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            00000000             000122334578999999999999999999999999999974

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=288.39  Aligned_cols=212  Identities=29%  Similarity=0.511  Sum_probs=152.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||||++++.+.+.    ..+++..++.++.||+.||.|||+. ||+||||||+||++.                    
T Consensus        99 iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~-giiHrDlKP~Nil~~--------------------  153 (355)
T d2b1pa1          99 LVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA-GIIHRDLKPSNIVVK--------------------  153 (355)
T ss_dssp             EEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC--------------------
T ss_pred             EEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhc-ccccccCCccccccc--------------------
Confidence            589999666666553    3489999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQT  158 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~~  158 (329)
                                                                          ....++++|||.+....  .......+|
T Consensus       154 ----------------------------------------------------~~~~~kl~df~~~~~~~~~~~~~~~~~t  181 (355)
T d2b1pa1         154 ----------------------------------------------------SDCTLKILDFGLARTAGTSFMMTPYVVT  181 (355)
T ss_dssp             ----------------------------------------------------TTCCEEECCCCC---------------C
T ss_pred             ----------------------------------------------------cccceeeechhhhhcccccccccccccc
Confidence                                                                34578999999875443  334555789


Q ss_pred             CCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC-ccccCc
Q 020248          159 RQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS-KDYFDR  237 (329)
Q Consensus       159 ~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~  237 (329)
                      +.|+|||++.+..++.++||||+||++|+|++|++||.+.      +....+..+.+.++..+.+++...... ..+...
T Consensus       182 ~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  255 (355)
T d2b1pa1         182 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR------DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVEN  255 (355)
T ss_dssp             CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS------SHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHT
T ss_pred             ccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC------CHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhc
Confidence            9999999999999999999999999999999999999876      577888888888888777666443222 112111


Q ss_pred             cCchhhhccccccchhHHHh-hhcC----CChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          238 HGDLKRIRRLKFWSLDRLLV-DKYR----FSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      .......      ....... ....    .....+..+.+||++||++||++||||+|||+||||+...
T Consensus       256 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         256 RPKYAGL------TFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             SCCCCCC------CHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             Ccccccc------ccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            1111000      0000000 0000    1123467899999999999999999999999999998744

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=280.47  Aligned_cols=209  Identities=23%  Similarity=0.398  Sum_probs=156.2

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +|||+|+..+........ ..+++..++.++.||+.||.|||++ ||+||||||+||++.                    
T Consensus        94 iv~e~~~~~~~~~~~~~~-~~~~~~~~~~i~~qil~~l~~lH~~-~ivHrDlKp~NILl~--------------------  151 (318)
T d3blha1          94 LVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRN-KILHRDMKAANVLIT--------------------  151 (318)
T ss_dssp             EEEECCCEEHHHHHTCTT-CCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC--------------------
T ss_pred             EEEeccCCCccchhhhcc-cccccHHHHHHHHHHHHHHHHhccC-CEEecCcCchheeec--------------------
Confidence            589999555555444332 4589999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc-------cccc
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN-------KQFA  153 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~-------~~~~  153 (329)
                                                                          ....++|+|||++....       ....
T Consensus       152 ----------------------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~  179 (318)
T d3blha1         152 ----------------------------------------------------RDGVLKLADFGLARAFSLAKNSQPNRYT  179 (318)
T ss_dssp             ----------------------------------------------------TTSCEEECCCTTCEECCC-----CCCCC
T ss_pred             ----------------------------------------------------CCCcEEeeecceeeeccccccccccccc
Confidence                                                                34579999999985433       1233


Q ss_pred             cCCCCCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ..+||+.|+|||++.+. .++.++||||+||++|+|++|++||.+.      ++...+..+.+..|.++.+.........
T Consensus       180 ~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~  253 (318)
T d3blha1         180 NRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN------TEQHQLALISQLCGSITPEVWPNVDNYE  253 (318)
T ss_dssp             SCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCTTTSTTCCCC-
T ss_pred             ceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC------CHHHHHHHHHHhcCCCChhhccccchhh
Confidence            35789999999999875 6899999999999999999999999876      6788999999999998877654433222


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSL  299 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~  299 (329)
                      .+......    .. ........+.     .......+.|||.+||++||++|+||.|+|+||||+.
T Consensus       254 ~~~~~~~~----~~-~~~~~~~~~~-----~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~  310 (318)
T d3blha1         254 LYEKLELV----KG-QKRKVKDRLK-----AYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS  310 (318)
T ss_dssp             ------CC----SS-CCBCHHHHHH-----HHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSS
T ss_pred             hhhhhccc----cc-ccccchhhhc-----cccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhcc
Confidence            11110000    00 0011111111     1122457889999999999999999999999999985

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.9e-37  Score=282.32  Aligned_cols=212  Identities=23%  Similarity=0.403  Sum_probs=155.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|..+.     +.+++..++.++.||+.||.|||++ ||+||||||+|||++..                 
T Consensus       109 ~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~-gIvHrDiKp~NILi~~~-----------------  165 (328)
T d3bqca1         109 LVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSM-GIMHRDVKPHNVMIDHE-----------------  165 (328)
T ss_dssp             EEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETT-----------------
T ss_pred             EEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhc-ccccccccccceEEcCC-----------------
Confidence            589999 77886542     3499999999999999999999995 99999999999999432                 


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccc--cccccCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRAN--KQFAEEIQ  157 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~--~~~~~~~~  157 (329)
                                                                            ...++|+|||.|....  ......++
T Consensus       166 ------------------------------------------------------~~~vkl~DFG~a~~~~~~~~~~~~~~  191 (328)
T d3bqca1         166 ------------------------------------------------------HRKLRLIDWGLAEFYHPGQEYNVRVA  191 (328)
T ss_dssp             ------------------------------------------------------TTEEEECCGGGCEECCTTCCCCSCCS
T ss_pred             ------------------------------------------------------CCeeeecccccceeccCCCccccccc
Confidence                                                                  2368999999996554  34556678


Q ss_pred             CCCCcchHHhhcC-CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcH-HHHhcCCCCc--c
Q 020248          158 TRQYRAPEVILRA-GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPR-KIAIGGAQSK--D  233 (329)
Q Consensus       158 ~~~y~aPE~~~~~-~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~-~~~~~~~~~~--~  233 (329)
                      |+.|+|||.+.+. .++.++||||+||++|++++|..||....     +..++...+...+|.... .+........  .
T Consensus       192 t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~-----~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~  266 (328)
T d3bqca1         192 SRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPR  266 (328)
T ss_dssp             CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGG
T ss_pred             CccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCc-----hhHHHHHHHHHHHCCchhhhhhhhcccccCcc
Confidence            9999999999876 47999999999999999999999997653     456678888888886432 2222211111  1


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNS  302 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~  302 (329)
                      +.+..+....      .......  ........++++.|||++||++||++||||+|+|+||||+.+.+
T Consensus       267 ~~~~~~~~~~------~~~~~~~--~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         267 FNDILGRHSR------KRWERFV--HSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             GGGTCCCCCC------CCGGGGC--CTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             cchhcccccc------cchhhcc--cccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence            1000000000      0011110  00112334678999999999999999999999999999998765

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-37  Score=282.24  Aligned_cols=209  Identities=30%  Similarity=0.483  Sum_probs=161.4

Q ss_pred             ccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            2 VLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         2 V~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      ||+++ |++|.+++..   +.+++..++.++.||+.||+|||++ ||+||||||+||++.                    
T Consensus       100 i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~LH~~-giiHrDiKp~NILi~--------------------  155 (348)
T d2gfsa1         100 LVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKYIHSA-DIIHRDLKPSNLAVN--------------------  155 (348)
T ss_dssp             EEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC--------------------
T ss_pred             EEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHHHHhC-CCcccccCCcccccc--------------------
Confidence            45555 9999999865   3599999999999999999999995 999999999999993                    


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCCC
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTRQ  160 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~  160 (329)
                                                                          ....++++|||.+...........|++.
T Consensus       156 ----------------------------------------------------~~~~~kl~dfg~a~~~~~~~~~~~g~~~  183 (348)
T d2gfsa1         156 ----------------------------------------------------EDCELKILDFGLARHTDDEMTGYVATRW  183 (348)
T ss_dssp             ----------------------------------------------------TTCCEEECCC----CCTGGGSSSCHHHH
T ss_pred             ----------------------------------------------------ccccccccccchhcccCccccccccccc
Confidence                                                                3457899999999887777777888999


Q ss_pred             CcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc--ccCc
Q 020248          161 YRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD--YFDR  237 (329)
Q Consensus       161 y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~  237 (329)
                      |+|||++.+.. ++.++||||+||++|+|++|.+||.+.      +.......|....+..+.++.........  +...
T Consensus       184 y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (348)
T d2gfsa1         184 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT------DHIDQLKLILRLVGTPGAELLKKISSESARNYIQS  257 (348)
T ss_dssp             TSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTT
T ss_pred             ccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC------CHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhh
Confidence            99999988764 689999999999999999999999876      67888889999999988877654332211  1000


Q ss_pred             cCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChh
Q 020248          238 HGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRD  305 (329)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~  305 (329)
                      ...      .....+...       ....+.++.|||++||++||++||||+|+|+||||+.......
T Consensus       258 ~~~------~~~~~~~~~-------~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~~~~  312 (348)
T d2gfsa1         258 LTQ------MPKMNFANV-------FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD  312 (348)
T ss_dssp             SCC------CCCCCHHHH-------STTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTTS
T ss_pred             ccc------CCCcchhhh-------cCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCCCcc
Confidence            000      000111111       1234568899999999999999999999999999998755443

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=279.79  Aligned_cols=213  Identities=31%  Similarity=0.480  Sum_probs=158.0

Q ss_pred             cccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccCC
Q 020248            2 VLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILERP   81 (329)
Q Consensus         2 V~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      +|+++|++|.+++...   .+++..++.++.||+.||+|||++ ||+||||||+|||++                     
T Consensus        89 ~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~-~iiHRDIKp~NILl~---------------------  143 (345)
T d1pmea_          89 VTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSA-NVLHRDLKPSNLLLN---------------------  143 (345)
T ss_dssp             EEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEEC---------------------
T ss_pred             EEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CCcCCCCCcceEEEC---------------------
Confidence            4455599999999764   499999999999999999999995 999999999999993                     


Q ss_pred             CCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccccC
Q 020248           82 EGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFAEE  155 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~~~  155 (329)
                                                                         ....++|+|||.+.....      .....
T Consensus       144 ---------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~  172 (345)
T d1pmea_         144 ---------------------------------------------------TTCDLKICDFGLARVADPDHDHTGFLTEY  172 (345)
T ss_dssp             ---------------------------------------------------TTCCEEECCCTTCEECCGGGCBCCTTCCC
T ss_pred             ---------------------------------------------------CCCCEEEcccCceeeccCCCccceeeccc
Confidence                                                               345799999999854432      23445


Q ss_pred             CCCCCCcchHHhh-cCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVIL-RAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~-~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      +||+.|+|||++. +..++.++||||+||++|+|++|..||.+.      +..+....+...++.++.............
T Consensus       173 ~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (345)
T d1pmea_         173 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK------HYLDQLNHILGILGSPSQEDLNCIINLKAR  246 (345)
T ss_dssp             CSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHHHCSCCHHHHHTCCCHHHH
T ss_pred             cccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCC------CHHHHHHHHhhhccCCChhhhhhhhhhhhh
Confidence            7899999999985 456899999999999999999999999876      567788888888888776554322111100


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCCCChhhh
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRNSTRDET  307 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~~~~~~~  307 (329)
                          .................       ....+..+.+||++||++||++||||.|+|+||||+....+.+..
T Consensus       247 ----~~~~~~~~~~~~~~~~~-------~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~~~~~  308 (345)
T d1pmea_         247 ----NYLLSLPHKNKVPWNRL-------FPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEP  308 (345)
T ss_dssp             ----HHHHTSCCCCCCCHHHH-------CTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCGGGSC
T ss_pred             ----cccccCCccCCCCHHHh-------CCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCCccCc
Confidence                00000000000011111       112346789999999999999999999999999999776555443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=270.74  Aligned_cols=208  Identities=27%  Similarity=0.384  Sum_probs=157.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||+++ |++|..++...  +.+++..++.++.|++.||+|||++ ||+||||||+||++.                   
T Consensus        78 iv~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~lH~~-~IvHrDiKP~NIli~-------------------  135 (292)
T d1unla_          78 LVFEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSR-NVLHRDLKPQNLLIN-------------------  135 (292)
T ss_dssp             EEEECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEC-------------------
T ss_pred             EEeeeccccccccccccc--cccchhHHHHHHHHHHHHHHHhhcC-CEeeecccCcccccc-------------------
Confidence            478898 78888877655  4589999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc---ccccCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK---QFAEEI  156 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~---~~~~~~  156 (329)
                                                                           ....++|+|||.+.....   ......
T Consensus       136 -----------------------------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~  162 (292)
T d1unla_         136 -----------------------------------------------------RNGELKLANFGLARAFGIPVRCYSAEV  162 (292)
T ss_dssp             -----------------------------------------------------TTCCEEECCCTTCEECCSCCSCCCSCC
T ss_pred             -----------------------------------------------------cCCceeeeecchhhcccCCCccceeec
Confidence                                                                 245789999999965543   223345


Q ss_pred             CCCCCcchHHhhcCC-CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          157 QTRQYRAPEVILRAG-YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       157 ~~~~y~aPE~~~~~~-~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      +++.|+|||++.+.. ++.++||||+||++|+|++|..||....     +..+++..+....+.++...+........+.
T Consensus       163 ~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (292)
T d1unla_         163 VTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK  237 (292)
T ss_dssp             SCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC
T ss_pred             cccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCC-----CHHHHHHHHHhhcCCCChhhhhhhhhccccc
Confidence            678999999988765 6899999999999999999999986543     5677888888888887765543332222211


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~~~~  301 (329)
                      ........             ..........++.+.+||++||++||.+||||+|+|+||||++..
T Consensus       238 ~~~~~~~~-------------~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~  290 (292)
T d1unla_         238 PYPMYPAT-------------TSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             CCCCCCTT-------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSCS
T ss_pred             cccccccc-------------chhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcCCC
Confidence            11110000             001112334467899999999999999999999999999998754

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=271.89  Aligned_cols=178  Identities=29%  Similarity=0.467  Sum_probs=137.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+|||++.                  
T Consensus        80 lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~-~ivHrDlKp~NiLl~~------------------  139 (276)
T d1uwha_          80 IVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAK-SIIHRDLKSNNIFLHE------------------  139 (276)
T ss_dssp             EEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEET------------------
T ss_pred             EEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcC-CEeccccCHHHEEEcC------------------
Confidence            589999 899999997643 4599999999999999999999995 9999999999999933                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                            ...+||+|||+|.....     ....
T Consensus       140 ------------------------------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~  165 (276)
T d1uwha_         140 ------------------------------------------------------DLTVKIGDFGLATVKSRWSGSHQFEQ  165 (276)
T ss_dssp             ------------------------------------------------------TSSEEECCCCCSCC------------
T ss_pred             ------------------------------------------------------CCCEEEccccceeeccccCCcccccc
Confidence                                                                  45799999999855432     2344


Q ss_pred             CCCCCCCcchHHhhcC---CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCC
Q 020248          155 EIQTRQYRAPEVILRA---GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQS  231 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~---~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  231 (329)
                      ..||+.|+|||++.+.   +|+.++|||||||++|||++|..||.+.      .....+..+....-..|.         
T Consensus       166 ~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~------~~~~~~~~~~~~~~~~p~---------  230 (276)
T d1uwha_         166 LSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI------NNRDQIIFMVGRGYLSPD---------  230 (276)
T ss_dssp             CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC------CCHHHHHHHHHHTSCCCC---------
T ss_pred             cccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC------ChHHHHHHHHhcCCCCCc---------
Confidence            5789999999999753   5899999999999999999999999876      233333333221111110         


Q ss_pred             ccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          232 KDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                 ....+..+++.+.+||.+||..||++|||++|+++|
T Consensus       231 ---------------------------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         231 ---------------------------LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             ---------------------------GGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------chhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                       001233456789999999999999999999999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=276.02  Aligned_cols=175  Identities=18%  Similarity=0.297  Sum_probs=138.9

Q ss_pred             Cccccc-chhHHHHHHhhcC---------------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q 020248            1 MVLEFL-GDSLLRLIKYSRY---------------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENIL   58 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~---------------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil   58 (329)
                      |||||| |++|.+++.....                     ..+++..+..++.||+.||+|||++ ||+||||||+||+
T Consensus       118 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~-~IiHRDlKp~Nil  196 (325)
T d1rjba_         118 LIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVL  196 (325)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEE
T ss_pred             EEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCchhccc
Confidence            589999 9999999976532                     2488999999999999999999995 9999999999999


Q ss_pred             eecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceE
Q 020248           59 LVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCK  138 (329)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (329)
                      ++.                                                                        ...++
T Consensus       197 l~~------------------------------------------------------------------------~~~~K  204 (325)
T d1rjba_         197 VTH------------------------------------------------------------------------GKVVK  204 (325)
T ss_dssp             EET------------------------------------------------------------------------TTEEE
T ss_pred             ccc------------------------------------------------------------------------CCeEE
Confidence            933                                                                        45899


Q ss_pred             EeecCcccccccc-----cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHH
Q 020248          139 VVDFGNACRANKQ-----FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLAL  212 (329)
Q Consensus       139 l~Dfg~a~~~~~~-----~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~  212 (329)
                      |+|||+|......     .....||+.|+|||++.+..|+.++|||||||++|||++ |..||.+.+      ....+..
T Consensus       205 l~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~------~~~~~~~  278 (325)
T d1rjba_         205 ICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP------VDANFYK  278 (325)
T ss_dssp             ECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC------CSHHHHH
T ss_pred             EeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC------HHHHHHH
Confidence            9999999654432     123456889999999999999999999999999999997 899998752      2233333


Q ss_pred             HHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHh
Q 020248          213 MMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCL  292 (329)
Q Consensus       213 i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell  292 (329)
                      +++-.-                                        ..+.+...+.++.+||.+||+.||++|||++||+
T Consensus       279 ~~~~~~----------------------------------------~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~  318 (325)
T d1rjba_         279 LIQNGF----------------------------------------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLT  318 (325)
T ss_dssp             HHHTTC----------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             HHhcCC----------------------------------------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence            322100                                        0112344567899999999999999999999998


Q ss_pred             cC
Q 020248          293 QH  294 (329)
Q Consensus       293 ~h  294 (329)
                      +|
T Consensus       319 ~~  320 (325)
T d1rjba_         319 SF  320 (325)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-36  Score=269.95  Aligned_cols=176  Identities=21%  Similarity=0.368  Sum_probs=139.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                  
T Consensus        84 lvmE~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~ylH~~-~iiHrDlKp~Nill~~------------------  142 (277)
T d1xbba_          84 LVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES-NFVHRDLAARNVLLVT------------------  142 (277)
T ss_dssp             EEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEE------------------
T ss_pred             EEEEcCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhHHhC-CcccCCCcchhhcccc------------------
Confidence            689999 89999998875  4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||++.....      ...
T Consensus       143 ------------------------------------------------------~~~~kl~DFGla~~~~~~~~~~~~~~  168 (277)
T d1xbba_         143 ------------------------------------------------------QHYAKISDFGLSKALRADENYYKAQT  168 (277)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCTTCSEEEC--
T ss_pred             ------------------------------------------------------cCcccccchhhhhhcccccccccccc
Confidence                                                                  45799999999965432      122


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...||+.|+|||++.+..++.++|||||||++|||++ |..||.+.      ...+....+.+  |.             
T Consensus       169 ~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~------~~~~~~~~i~~--~~-------------  227 (277)
T d1xbba_         169 HGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM------KGSEVTAMLEK--GE-------------  227 (277)
T ss_dssp             --CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC------CHHHHHHHHHT--TC-------------
T ss_pred             ccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC------CHHHHHHHHHc--CC-------------
Confidence            3467899999999999999999999999999999997 89999875      22222222211  11             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH---hcCCCcC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC---LQHPWLS  298 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el---l~hpwf~  298 (329)
                                                ..+.+..++.++.+||.+||+.||++|||+++|   |+|+|+.
T Consensus       228 --------------------------~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         228 --------------------------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             --------------------------CCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence                                      112344456789999999999999999999998   4566654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=269.46  Aligned_cols=178  Identities=23%  Similarity=0.394  Sum_probs=142.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                  
T Consensus        85 lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~~-~iiHrDlKp~Nill~~------------------  144 (285)
T d1u59a_          85 LVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEK-NFVHRDLAARNVLLVN------------------  144 (285)
T ss_dssp             EEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEEE------------------
T ss_pred             EEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHhC-CeecCcCchhheeecc------------------
Confidence            689999 899999876543 4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++|+|||++.....      ...
T Consensus       145 ------------------------------------------------------~~~~Kl~DFGla~~~~~~~~~~~~~~  170 (285)
T d1u59a_         145 ------------------------------------------------------RHYAKISDFGLSKALGADDSYYTARS  170 (285)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECTTCSCEECCCC
T ss_pred             ------------------------------------------------------CCceeeccchhhhccccccccccccc
Confidence                                                                  45799999999965432      223


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...||+.|+|||++.+..++.++|||||||++|||++ |..||.+..      ..+.+..+.+  |.             
T Consensus       171 ~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~------~~~~~~~i~~--~~-------------  229 (285)
T d1u59a_         171 AGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK-------------  229 (285)
T ss_dssp             SSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--TC-------------
T ss_pred             ccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC-------------
Confidence            3467889999999999999999999999999999997 999998762      3333332211  11             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH---hcCCCcCC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC---LQHPWLSL  299 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el---l~hpwf~~  299 (329)
                                                ....+...+.++.+||.+||..||++|||+.+|   |+|+|+..
T Consensus       230 --------------------------~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~  273 (285)
T d1u59a_         230 --------------------------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  273 (285)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             --------------------------CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence                                      112344556789999999999999999999988   66888754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=266.48  Aligned_cols=175  Identities=23%  Similarity=0.355  Sum_probs=132.4

Q ss_pred             Cccccc-chhHHHHHHhhcC--------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||| |++|.+++.....              ..+++..+..++.||+.||.|||++ ||+||||||+|||++     
T Consensus        95 iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~-~ivHrDlKp~NILl~-----  168 (299)
T d1ywna1          95 VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNILLS-----  168 (299)
T ss_dssp             EEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-----
T ss_pred             EEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC-CCcCCcCCccceeEC-----
Confidence            589999 8999999976431              3488999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....+||+|||+|
T Consensus       169 -------------------------------------------------------------------~~~~~Kl~DFGla  181 (299)
T d1ywna1         169 -------------------------------------------------------------------EKNVVKICDFGLA  181 (299)
T ss_dssp             -------------------------------------------------------------------GGGCEEECC----
T ss_pred             -------------------------------------------------------------------CCCcEEEccCcch
Confidence                                                                               3457999999999


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhC-CcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......||+.|+|||++.+..++.++||||+||++|||++| .+||.+..      ....+..+... |.
T Consensus       182 ~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~------~~~~~~~~~~~-~~  254 (299)
T d1ywna1         182 RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK------IDEEFCRRLKE-GT  254 (299)
T ss_dssp             --CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------CSHHHHHHHHH-TC
T ss_pred             hhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc-CC
Confidence            54432     22345789999999999999999999999999999999986 56776542      22222222111 10


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                             ....+...++++.+||.+||+.||++|||++|+++|
T Consensus       255 ---------------------------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         255 ---------------------------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             ---------------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------------------------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                                   111234456789999999999999999999999987

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=266.14  Aligned_cols=179  Identities=22%  Similarity=0.382  Sum_probs=141.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| +++|.+++.......+++..+..++.||+.||.|||++ ||+||||||+||++                    
T Consensus        84 iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~-~ivHrDiKp~NIll--------------------  142 (272)
T d1qpca_          84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER-NYIHRDLRAANILV--------------------  142 (272)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEE--------------------
T ss_pred             EEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCccchhheee--------------------
Confidence            589999 89999987766545699999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                          +....+||+|||+|.....    .....
T Consensus       143 ----------------------------------------------------~~~~~~Kl~DFGla~~~~~~~~~~~~~~  170 (272)
T d1qpca_         143 ----------------------------------------------------SDTLSCKIADFGLARLIEDNEYTAREGA  170 (272)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             ----------------------------------------------------ecccceeeccccceEEccCCcccccccc
Confidence                                                                3356799999999965542    22334


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .|++.|+|||++.+..++.++|||||||++|||++|..||....     .....+..+..  |.                
T Consensus       171 ~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~-----~~~~~~~~i~~--~~----------------  227 (272)
T d1qpca_         171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-----TNPEVIQNLER--GY----------------  227 (272)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHT--TC----------------
T ss_pred             CCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHh--cC----------------
Confidence            67889999999999999999999999999999999655543331     22223222211  00                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc--CCCcC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLS  298 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~--hpwf~  298 (329)
                                             ....+...+..+.+||++||+.||++|||++|+++  |+||+
T Consensus       228 -----------------------~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         228 -----------------------RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             -----------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----------------------CCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence                                   01123345678999999999999999999999998  88886

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=267.76  Aligned_cols=185  Identities=25%  Similarity=0.363  Sum_probs=144.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++....  .+++..++.++.||+.||.|+|+. ||+||||||+||++.                   
T Consensus       106 ~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~-~ivHrDiKp~Nill~-------------------  163 (322)
T d1vzoa_         106 LILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKL-GIIYRDIKLENILLD-------------------  163 (322)
T ss_dssp             EEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGGEEEC-------------------
T ss_pred             eeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcC-CEEeccCCccceeec-------------------
Confidence            489999 899999998874  488999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       164 -----------------------------------------------------~~~~vkL~DFG~a~~~~~~~~~~~~~~  190 (322)
T d1vzoa_         164 -----------------------------------------------------SNGHVVLTDFGLSKEFVADETERAYDF  190 (322)
T ss_dssp             -----------------------------------------------------TTSCEEESCSSEEEECCGGGGGGGCGG
T ss_pred             -----------------------------------------------------CCCCEEEeeccchhhhccccccccccc
Confidence                                                                 345799999999855432    23345


Q ss_pred             CCCCCCcchHHhhcC--CCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          156 IQTRQYRAPEVILRA--GYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~--~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      .|++.|++||.+.+.  .++.++|||||||++|+|++|..||.+....      .....+.+                  
T Consensus       191 ~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~------~~~~~i~~------------------  246 (322)
T d1vzoa_         191 CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK------NSQAEISR------------------  246 (322)
T ss_dssp             GSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC------CCHHHHHH------------------
T ss_pred             ccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHH------------------
Confidence            788999999999865  4788999999999999999999999876311      11111111                  


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCc-----CHHHHhcCCCcCCCCCCh
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRP-----TAQQCLQHPWLSLRNSTR  304 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~-----ta~ell~hpwf~~~~~~~  304 (329)
                                          .........+...+.++.+||.+||++||++|+     |++|+++||||+..++..
T Consensus       247 --------------------~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~  302 (322)
T d1vzoa_         247 --------------------RILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDD  302 (322)
T ss_dssp             --------------------HHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHH
T ss_pred             --------------------hcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHH
Confidence                                111111223445678999999999999999999     589999999999876543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-35  Score=264.99  Aligned_cols=173  Identities=19%  Similarity=0.348  Sum_probs=130.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+|||+                    
T Consensus       104 iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~~-~iiHrDlKp~NILl--------------------  161 (299)
T d1jpaa_         104 IITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLADM-NYVHRDLAARNILV--------------------  161 (299)
T ss_dssp             EEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEE--------------------
T ss_pred             EEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhhC-CCccCccccceEEE--------------------
Confidence            589999 899999888643 4589999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc--------
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ--------  151 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~--------  151 (329)
                                                                          +....+||+|||++......        
T Consensus       162 ----------------------------------------------------~~~~~~Kl~DFGla~~~~~~~~~~~~~~  189 (299)
T d1jpaa_         162 ----------------------------------------------------NSNLVCKVSDFGLSRFLEDDTSDPTYTS  189 (299)
T ss_dssp             ----------------------------------------------------CTTCCEEECCC-----------------
T ss_pred             ----------------------------------------------------CCCCcEEECCcccceEccCCCCcceeee
Confidence                                                                33467999999999654321        


Q ss_pred             cccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          152 FAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       152 ~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      .....+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.      .....+..+.+  |.           
T Consensus       190 ~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~------~~~~~~~~i~~--~~-----------  250 (299)
T d1jpaa_         190 ALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM------TNQDVINAIEQ--DY-----------  250 (299)
T ss_dssp             ------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHT--TC-----------
T ss_pred             cccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC------CHHHHHHHHHc--CC-----------
Confidence            112346889999999999999999999999999999998 89999876      23333332221  00           


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                  ..+.+...+..+.+||.+||+.||++|||++|++++
T Consensus       251 ----------------------------~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         251 ----------------------------RLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             ----------------------------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             ----------------------------CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                        011233456789999999999999999999998764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=259.14  Aligned_cols=173  Identities=21%  Similarity=0.343  Sum_probs=129.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| +++|.+++.... ..+++..+..++.||+.||.|||++ +|+||||||+||+++                   
T Consensus        77 lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~-~iiHrDlKp~Nill~-------------------  135 (263)
T d1sm2a_          77 LVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEA-CVIHRDLAARNCLVG-------------------  135 (263)
T ss_dssp             EEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCTTCSGGGEEEC-------------------
T ss_pred             EEEEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhcc-ceeecccchhheeec-------------------
Confidence            589999 899999987653 4588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....+||+|||++......    ....
T Consensus       136 -----------------------------------------------------~~~~~Kl~DFGla~~~~~~~~~~~~~~  162 (263)
T d1sm2a_         136 -----------------------------------------------------ENQVIKVSDFGMTRFVLDDQYTSSTGT  162 (263)
T ss_dssp             -----------------------------------------------------GGGCEEECSCC----------------
T ss_pred             -----------------------------------------------------CCCCeEecccchheeccCCCceeecce
Confidence                                                                 3457999999998654421    2234


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhC-CcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .||+.|+|||++.+..|+.++|||||||++|||+++ .+||...      .....+..+..  |.               
T Consensus       163 ~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~------~~~~~~~~i~~--~~---------------  219 (263)
T d1sm2a_         163 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR------SNSEVVEDIST--GF---------------  219 (263)
T ss_dssp             --CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC------CHHHHHHHHHH--TC---------------
T ss_pred             ecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC------CHHHHHHHHHh--cC---------------
Confidence            678999999999999999999999999999999995 5555543      23333333321  10               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+..++.++.+||.+||+.||++|||++|+++|
T Consensus       220 ------------------------~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         220 ------------------------RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             ------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                                    011233446789999999999999999999999986

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.9e-35  Score=261.71  Aligned_cols=174  Identities=22%  Similarity=0.339  Sum_probs=137.6

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| +++|.+++.......+++..+..++.||+.||+|||++ ||+||||||+|||++                   
T Consensus        90 iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~-~iiHrDlKp~NILl~-------------------  149 (287)
T d1opja_          90 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK-NFIHRDLAARNCLVG-------------------  149 (287)
T ss_dssp             EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-------------------
T ss_pred             EEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC-CcccCccccCeEEEC-------------------
Confidence            589999 89999999877666799999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc----cccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ----FAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~----~~~~  155 (329)
                                                                           ....+||+|||.|......    ....
T Consensus       150 -----------------------------------------------------~~~~~Kl~DFG~a~~~~~~~~~~~~~~  176 (287)
T d1opja_         150 -----------------------------------------------------ENHLVKVADFGLSRLMTGDTYTAHAGA  176 (287)
T ss_dssp             -----------------------------------------------------GGGCEEECCCCCTTTCCSSSSEEETTE
T ss_pred             -----------------------------------------------------CCCcEEEccccceeecCCCCceeeccc
Confidence                                                                 3457999999999665432    1222


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .|++.|+|||++.+..|+.++|||||||++|||++|..||...      .+...+..++.. +.                
T Consensus       177 ~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~------~~~~~~~~~i~~-~~----------------  233 (287)
T d1opja_         177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG------IDLSQVYELLEK-DY----------------  233 (287)
T ss_dssp             EECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT------CCHHHHHHHHHT-TC----------------
T ss_pred             cccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc------chHHHHHHHHhc-CC----------------
Confidence            4678899999999999999999999999999999977666543      122222222110 00                


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                             ....+...+..+.+||++||+.||++|||++|+++
T Consensus       234 -----------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         234 -----------------------RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             -----------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                                   01123445678999999999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.1e-35  Score=262.67  Aligned_cols=179  Identities=24%  Similarity=0.368  Sum_probs=133.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||| |++|.+++...  +.+++..++.++.||+.||+|||++ ||+||||||+||++..                  
T Consensus        88 lvmE~~~g~~L~~~~~~~--~~l~~~~~~~i~~qi~~al~~lH~~-~iiHrDiKP~NIll~~------------------  146 (277)
T d1o6ya_          88 IVMEYVDGVTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQN-GIIHRDVKPANIMISA------------------  146 (277)
T ss_dssp             EEEECCCEEEHHHHHHHH--CSCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEET------------------
T ss_pred             EEEECCCCCEehhhhccc--CCCCHHHHHHHHHHHHHHHHHHHhC-CccCccccCcccccCc------------------
Confidence            589999 89999988876  4599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                            ...++++|||.+.....      ...
T Consensus       147 ------------------------------------------------------~~~~~l~d~~~~~~~~~~~~~~~~~~  172 (277)
T d1o6ya_         147 ------------------------------------------------------TNAVKVMDFGIARAIADSGNSVTQTA  172 (277)
T ss_dssp             ------------------------------------------------------TSCEEECCCTTCEECC----------
T ss_pred             ------------------------------------------------------cccceeehhhhhhhhccccccccccc
Confidence                                                                  45789999998744321      234


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..+||+.|+|||++.+..++.++||||+||++|+|++|.+||.+.      +....+..+... ++.++           
T Consensus       173 ~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~------~~~~~~~~~~~~-~~~~~-----------  234 (277)
T d1o6ya_         173 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD------SPVSVAYQHVRE-DPIPP-----------  234 (277)
T ss_dssp             ------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS------SHHHHHHHHHHC-CCCCG-----------
T ss_pred             cccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc------CHHHHHHHHHhc-CCCCC-----------
Confidence            457899999999999999999999999999999999999999765      233333322211 11100           


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcCCCcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQHPWLS  298 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~hpwf~  298 (329)
                                                .......+..+.+||.+||+.||++||+.++.+.|+|.+
T Consensus       235 --------------------------~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         235 --------------------------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             --------------------------GGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             --------------------------chhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHH
Confidence                                      001223467899999999999999999655566677764

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=258.95  Aligned_cols=182  Identities=25%  Similarity=0.386  Sum_probs=140.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|..++.......+++..+..++.||+.||+|||++ ||+||||||+|||++                   
T Consensus        88 lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~-~ivH~DlKp~NIll~-------------------  147 (285)
T d1fmka3          88 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM-NYVHRDLRAANILVG-------------------  147 (285)
T ss_dssp             EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-------------------
T ss_pred             EEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh-heecccccceEEEEC-------------------
Confidence            589999 88999998876656799999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       148 -----------------------------------------------------~~~~~kl~DfGla~~~~~~~~~~~~~~  174 (285)
T d1fmka3         148 -----------------------------------------------------ENLVCKVADFGLARLIEDNEYTARQGA  174 (285)
T ss_dssp             -----------------------------------------------------GGGCEEECCCCTTC-------------
T ss_pred             -----------------------------------------------------CCCcEEEcccchhhhccCCCceeeccc
Confidence                                                                 245799999999965432    22335


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYF  235 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  235 (329)
                      .||+.|+|||.+....++.++|||||||++|||++|..||....     .....+..+.+  +                 
T Consensus       175 ~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-----~~~~~~~~i~~--~-----------------  230 (285)
T d1fmka3         175 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVER--G-----------------  230 (285)
T ss_dssp             -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHT--T-----------------
T ss_pred             cccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-----CHHHHHHHHHh--c-----------------
Confidence            67899999999999999999999999999999999665554431     22223332211  0                 


Q ss_pred             CccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc--CCCcCCCC
Q 020248          236 DRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ--HPWLSLRN  301 (329)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~--hpwf~~~~  301 (329)
                                            ...+.+...++++.+||.+||+.||++|||+.+|++  |+||+...
T Consensus       231 ----------------------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         231 ----------------------YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             ----------------------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             ----------------------CCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence                                  011234455678999999999999999999999988  89998653

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=255.10  Aligned_cols=173  Identities=20%  Similarity=0.376  Sum_probs=139.2

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| +++|..++.... ..+++..+..++.|++.||.|||++ ||+||||||+||+++                   
T Consensus        76 iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~-~iiH~dlk~~Nill~-------------------  134 (258)
T d1k2pa_          76 IITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESK-QFLHRDLAARNCLVN-------------------  134 (258)
T ss_dssp             EEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT-TBCCSCCSGGGEEEC-------------------
T ss_pred             EEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhc-CcccccccceeEEEc-------------------
Confidence            589999 899999877654 4588999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                           ....++|+|||.+.....    .....
T Consensus       135 -----------------------------------------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~  161 (258)
T d1k2pa_         135 -----------------------------------------------------DQGVVKVSDFGLSRYVLDDEYTSSVGS  161 (258)
T ss_dssp             -----------------------------------------------------TTCCEEECCCSSCCBCSSSSCCCCCCS
T ss_pred             -----------------------------------------------------CCCcEEECcchhheeccCCCceeeccc
Confidence                                                                 345799999999954432    22335


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .+|+.|+|||++.+..++.++|||||||++|||++ |..||.+.      ...+....+.+  |.               
T Consensus       162 ~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~------~~~~~~~~i~~--~~---------------  218 (258)
T d1k2pa_         162 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF------TNSETAEHIAQ--GL---------------  218 (258)
T ss_dssp             CCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS------CHHHHHHHHHT--TC---------------
T ss_pred             CCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC------CHHHHHHHHHh--CC---------------
Confidence            67889999999999999999999999999999998 89999876      23333333321  10               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ....+...+..+.+||++||+.||++|||+.||++|
T Consensus       219 ------------------------~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         219 ------------------------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                                    011233446789999999999999999999999987

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=258.56  Aligned_cols=173  Identities=18%  Similarity=0.334  Sum_probs=131.0

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..+++..+..++.||+.||.|||++ ||+||||||+||+++.                  
T Consensus        84 iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDlKp~NIll~~------------------  143 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESK-RFVHRDIAARNVLVSS------------------  143 (273)
T ss_dssp             EEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEEE------------------
T ss_pred             EEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhccc-CeeccccchhheeecC------------------
Confidence            589999 899999877643 4689999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----ccccC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----QFAEE  155 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----~~~~~  155 (329)
                                                                            ...+||+|||.+.....    .....
T Consensus       144 ------------------------------------------------------~~~~Kl~DfG~a~~~~~~~~~~~~~~  169 (273)
T d1mp8a_         144 ------------------------------------------------------NDCVKLGDFGLSRYMEDSTYYKASKG  169 (273)
T ss_dssp             ------------------------------------------------------TTEEEECC------------------
T ss_pred             ------------------------------------------------------CCcEEEccchhheeccCCcceeccce
Confidence                                                                  45799999999965442    22344


Q ss_pred             CCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccc
Q 020248          156 IQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDY  234 (329)
Q Consensus       156 ~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  234 (329)
                      .||+.|+|||++.+..++.++|||||||++|||++ |.+||....      ..+.+..+..  |.               
T Consensus       170 ~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~------~~~~~~~i~~--~~---------------  226 (273)
T d1mp8a_         170 KLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIEN--GE---------------  226 (273)
T ss_dssp             -CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT--TC---------------
T ss_pred             ecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CC---------------
Confidence            67889999999999999999999999999999987 899997762      3333332221  11               


Q ss_pred             cCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          235 FDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                              ..+.+...+..+.+||.+||..||++|||+.||++|
T Consensus       227 ------------------------~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         227 ------------------------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                    012344556789999999999999999999999876

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=254.16  Aligned_cols=174  Identities=21%  Similarity=0.311  Sum_probs=133.8

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      |||||+ |++|.+++.......++...+..++.||+.||.|||++ +|+||||||+||++                    
T Consensus        78 lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~-~ivH~dlkp~Nil~--------------------  136 (262)
T d1byga_          78 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN-NFVHRDLAARNVLV--------------------  136 (262)
T ss_dssp             EEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------------
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC-ceeccccchHhhee--------------------
Confidence            589999 99999999776545589999999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccccccCCCCC
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQFAEEIQTR  159 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~  159 (329)
                                                                          +....++++|||.+...........++.
T Consensus       137 ----------------------------------------------------~~~~~~kl~dfg~s~~~~~~~~~~~~~~  164 (262)
T d1byga_         137 ----------------------------------------------------SEDNVAKVSDFGLTKEASSTQDTGKLPV  164 (262)
T ss_dssp             ----------------------------------------------------CTTSCEEECCCCC------------CCT
T ss_pred             ----------------------------------------------------cCCCCEeecccccceecCCCCccccccc
Confidence                                                                3345789999999977666666667889


Q ss_pred             CCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCccccCcc
Q 020248          160 QYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKDYFDRH  238 (329)
Q Consensus       160 ~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  238 (329)
                      .|+|||++.+..++.++|||||||++|||++ |.+||....      ..+....+..  |                    
T Consensus       165 ~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~------~~~~~~~i~~--~--------------------  216 (262)
T d1byga_         165 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK--G--------------------  216 (262)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC------GGGHHHHHTT--T--------------------
T ss_pred             cCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--C--------------------
Confidence            9999999999999999999999999999998 788886652      2222222210  0                    


Q ss_pred             CchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          239 GDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                         ...+.+...+..+.+||.+||..||++|||+.|++++
T Consensus       217 -------------------~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         217 -------------------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             -------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------CCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence                               1112344556789999999999999999999999873

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=256.81  Aligned_cols=173  Identities=20%  Similarity=0.353  Sum_probs=135.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      ++||++ +++|.+.+.... ..+++..+..++.||+.||+|||++ ||+||||||+||+++.                  
T Consensus        87 ~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~-~iiHrDlKp~NIll~~------------------  146 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDR-RLVHRDLAARNVLVKT------------------  146 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEEE------------------
T ss_pred             EEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHc-CcccCcchhhcceeCC------------------
Confidence            467777 889998887653 5699999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-----cccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-----QFAE  154 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-----~~~~  154 (329)
                                                                            ...++|+|||++.....     ....
T Consensus       147 ------------------------------------------------------~~~~kl~DFGla~~~~~~~~~~~~~~  172 (317)
T d1xkka_         147 ------------------------------------------------------PQHVKITDFGLAKLLGAEEKEYHAEG  172 (317)
T ss_dssp             ------------------------------------------------------TTEEEECCCSHHHHTTTTCC------
T ss_pred             ------------------------------------------------------CCCeEeeccccceecccccccccccc
Confidence                                                                  45799999999965432     1223


Q ss_pred             CCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          155 EIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       155 ~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ..||+.|+|||++.+..|+.++|||||||++|||++ |.+||.+.+      .......+..  |.              
T Consensus       173 ~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~------~~~~~~~i~~--~~--------------  230 (317)
T d1xkka_         173 GKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP------ASEISSILEK--GE--------------  230 (317)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC------GGGHHHHHHH--TC--------------
T ss_pred             cccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--CC--------------
Confidence            457899999999999999999999999999999998 788887652      2222222211  10              


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                               ..+.+..++..+.+||.+||+.||++|||+.|+++|
T Consensus       231 -------------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         231 -------------------------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             -------------------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------------------CCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHH
Confidence                                     012334556789999999999999999999999987

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-33  Score=249.12  Aligned_cols=173  Identities=18%  Similarity=0.307  Sum_probs=129.9

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| ++++.+++.... ..++...+..++.||+.||+|||++ +|+||||||+|||++                   
T Consensus        86 ~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~lH~~-~iiHrDlKp~NILl~-------------------  144 (283)
T d1mqba_          86 IITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANM-NYVHRDLAARNILVN-------------------  144 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEC-------------------
T ss_pred             EEEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhcccc-ccccCccccceEEEC-------------------
Confidence            589999 888988877653 4699999999999999999999995 999999999999993                   


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc------ccc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK------QFA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~------~~~  153 (329)
                                                                           ....+||+|||++.....      ...
T Consensus       145 -----------------------------------------------------~~~~~Kl~DFGla~~~~~~~~~~~~~~  171 (283)
T d1mqba_         145 -----------------------------------------------------SNLVCKVSDFGLSRVLEDDPEATYTTS  171 (283)
T ss_dssp             -----------------------------------------------------TTCCEEECCCCC---------------
T ss_pred             -----------------------------------------------------CCCeEEEcccchhhcccCCCccceEec
Confidence                                                                 345799999999965432      112


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCcc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSKD  233 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  233 (329)
                      ...||+.|+|||++.+..++.++|||||||++|||++|..||....     .....+..+..  |               
T Consensus       172 ~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~-----~~~~~~~~i~~--~---------------  229 (283)
T d1mqba_         172 GGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL-----SNHEVMKAIND--G---------------  229 (283)
T ss_dssp             --CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHT--T---------------
T ss_pred             cCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC-----CHHHHHHHHhc--c---------------
Confidence            2357889999999999999999999999999999999666554431     22222222211  0               


Q ss_pred             ccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          234 YFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                              ...+.+...+..+.+||.+||+.||++|||+.||++
T Consensus       230 ------------------------~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         230 ------------------------FRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             ------------------------CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ------------------------CCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence                                    001123445678999999999999999999999976

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-33  Score=249.68  Aligned_cols=173  Identities=23%  Similarity=0.379  Sum_probs=136.9

Q ss_pred             Cccccc-chhHHHHHHhhc--------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSR--------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~--------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||| |++|.+++....              ...+++..++.++.||+.||+|||++ ||+||||||+|||+.     
T Consensus        96 ~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~-~ivHrDiKp~NiLl~-----  169 (299)
T d1fgka_          96 VIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK-KCIHRDLAARNVLVT-----  169 (299)
T ss_dssp             EEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEC-----
T ss_pred             EEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC-CEEeeeecccceeec-----
Confidence            589999 999999997653              13489999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       170 -------------------------------------------------------------------~~~~~kl~dfg~~  182 (299)
T d1fgka_         170 -------------------------------------------------------------------EDNVMKIADFGLA  182 (299)
T ss_dssp             -------------------------------------------------------------------TTCCEEECSTTCC
T ss_pred             -------------------------------------------------------------------CCCCeEeccchhh
Confidence                                                                               3457899999998


Q ss_pred             ccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCC
Q 020248          146 CRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGK  219 (329)
Q Consensus       146 ~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  219 (329)
                      .....     ......+++.|+|||.+.+..|+.++|||||||++|+|++ |.+||.+.      ........+ .. |.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~------~~~~~~~~i-~~-~~  254 (299)
T d1fgka_         183 RDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV------PVEELFKLL-KE-GH  254 (299)
T ss_dssp             CCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHH-HT-TC
T ss_pred             ccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC------CHHHHHHHH-Hc-CC
Confidence            65543     2233567889999999999999999999999999999997 78888765      222222211 10 11


Q ss_pred             CcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          220 MPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       220 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                             ....+...+..+.+||.+||++||++|||+.||++
T Consensus       255 ---------------------------------------~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         255 ---------------------------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             ---------------------------------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------------------------CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence                                                   01123334668999999999999999999999986

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.3e-33  Score=251.20  Aligned_cols=187  Identities=19%  Similarity=0.272  Sum_probs=138.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||||++|.+.+.... +.++...+..++.|++.||+|||++ ||+||||||+||++...                  
T Consensus        80 ivme~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~-~iiHrDiKp~NIl~~~~------------------  139 (299)
T d1ckia_          80 MVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSK-NFIHRDVKPDNFLMGLG------------------  139 (299)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECCG------------------
T ss_pred             EEEEEcCCchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHC-CeeeccCCHhhcccccc------------------
Confidence            589999888888776543 5699999999999999999999995 99999999999998432                  


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                         +....++|+|||.|.....          
T Consensus       140 ---------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~~~~~~~  168 (299)
T d1ckia_         140 ---------------------------------------------------KKGNLVYIIDFGLAKKYRDARTHQHIPYR  168 (299)
T ss_dssp             ---------------------------------------------------GGTTCEEECCCSSCEECBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------CCCceeeeeccCcceeccccccccceecc
Confidence                                                               2235699999999965432          


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ......||+.|+|||++.+.+++.++|||||||++|+|++|..||......      .....+.....            
T Consensus       169 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~------~~~~~~~~~~~------------  230 (299)
T d1ckia_         169 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA------TKRQKYERISE------------  230 (299)
T ss_dssp             BCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------------HHHHHH------------
T ss_pred             ccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchH------HHHHHHHHhhc------------
Confidence            123457899999999999999999999999999999999999999875311      11111100000            


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHH---HhcCCCcC
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQ---CLQHPWLS  298 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~e---ll~hpwf~  298 (329)
                                            ..............+.++.+||.+||+.||++||++++   +|+|+|.+
T Consensus       231 ----------------------~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         231 ----------------------KKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             ----------------------HHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ----------------------ccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHH
Confidence                                  00000000012334678999999999999999999875   46777654

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.8e-33  Score=248.53  Aligned_cols=173  Identities=24%  Similarity=0.331  Sum_probs=135.5

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| +++|.+.+.... ..++...+..++.||+.||.|||++ ||+||||||+||++..                  
T Consensus        87 lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~-~iiHrDikp~NIll~~------------------  146 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESK-RFIHRDLAARNLLLAT------------------  146 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEEEE------------------
T ss_pred             eeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhC-CEeeeeecHHHhcccc------------------
Confidence            589999 889998877654 3599999999999999999999995 9999999999999943                  


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcccccccc------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANKQ------FA  153 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~~------~~  153 (329)
                                                                            ...++|+|||.+......      ..
T Consensus       147 ------------------------------------------------------~~~vkl~DfGl~~~~~~~~~~~~~~~  172 (273)
T d1u46a_         147 ------------------------------------------------------RDLVKIGDFGLMRALPQNDDHYVMQE  172 (273)
T ss_dssp             ------------------------------------------------------TTEEEECCCTTCEECCC-CCEEEC--
T ss_pred             ------------------------------------------------------ccceeeccchhhhhcccCCCcceecC
Confidence                                                                  457999999999654321      22


Q ss_pred             cCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          154 EEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       154 ~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ...+|..|+|||++.+..++.++|||||||++|||++ |..||.+.      +..+.+..+.+. +.             
T Consensus       173 ~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~------~~~~~~~~i~~~-~~-------------  232 (273)
T d1u46a_         173 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL------NGSQILHKIDKE-GE-------------  232 (273)
T ss_dssp             ---CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHHHTS-CC-------------
T ss_pred             ccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc------CHHHHHHHHHhC-CC-------------
Confidence            3356789999999999999999999999999999997 89999876      334443333210 00             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                                ..+.+...+..+.+||.+||+.||++|||+.||++
T Consensus       233 --------------------------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         233 --------------------------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --------------------------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                      01123344678999999999999999999999863

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-33  Score=250.60  Aligned_cols=174  Identities=20%  Similarity=0.293  Sum_probs=136.2

Q ss_pred             Cccccc-chhHHHHHHhh--------------cCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYS--------------RYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDP   65 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~--------------~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~   65 (329)
                      +||||| |++|.+++...              ....++...+..++.||+.||.|||++ ||+||||||+|||+.     
T Consensus        88 iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~-~iiHrDlkp~NIL~~-----  161 (309)
T d1fvra_          88 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK-QFIHRDLAARNILVG-----  161 (309)
T ss_dssp             EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEEC-----
T ss_pred             EEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC-CccccccccceEEEc-----
Confidence            589999 89999998754              234689999999999999999999995 999999999999993     


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCcc
Q 020248           66 SKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNA  145 (329)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a  145 (329)
                                                                                         ....++|+|||.+
T Consensus       162 -------------------------------------------------------------------~~~~~kl~DfG~a  174 (309)
T d1fvra_         162 -------------------------------------------------------------------ENYVAKIADFGLS  174 (309)
T ss_dssp             -------------------------------------------------------------------GGGCEEECCTTCE
T ss_pred             -------------------------------------------------------------------CCCceEEcccccc
Confidence                                                                               3467999999999


Q ss_pred             ccccc--ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCC-cCCCCCCCCCCCCchHHHHHHHHHhCCCcH
Q 020248          146 CRANK--QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLALMMELIGKMPR  222 (329)
Q Consensus       146 ~~~~~--~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  222 (329)
                      .....  ......+|..|+|||.+.+..++.++|||||||++|||++|. +||.+.      +....+..+.+  |    
T Consensus       175 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~------~~~~~~~~i~~--~----  242 (309)
T d1fvra_         175 RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM------TCAELYEKLPQ--G----  242 (309)
T ss_dssp             ESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC------CHHHHHHHGGG--T----
T ss_pred             ccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC------CHHHHHHHHHh--c----
Confidence            65543  223446789999999999999999999999999999999975 567654      22222222110  0    


Q ss_pred             HHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          223 KIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                         .....+...+.++.+||.+||+.||++|||+.||++|
T Consensus       243 -----------------------------------~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         243 -----------------------------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             -----------------------------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                               0112334456789999999999999999999999987

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.4e-32  Score=246.61  Aligned_cols=173  Identities=18%  Similarity=0.311  Sum_probs=134.2

Q ss_pred             Cccccc-chhHHHHHHhhc----------------------CCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q 020248            1 MVLEFL-GDSLLRLIKYSR----------------------YKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENI   57 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~----------------------~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Ni   57 (329)
                      +|||+| +++|.+++....                      ...++...+..++.||+.||+|||++ +++||||||+||
T Consensus        93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~-~ivHrDlKp~NI  171 (301)
T d1lufa_          93 LLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNC  171 (301)
T ss_dssp             EEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGE
T ss_pred             EEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC-CeEeeEEcccce
Confidence            489999 899999997532                      12488899999999999999999995 999999999999


Q ss_pred             eeecCCCCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCce
Q 020248           58 LLVSTIDPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRC  137 (329)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (329)
                      +++                                                                        ....+
T Consensus       172 Lld------------------------------------------------------------------------~~~~~  179 (301)
T d1lufa_         172 LVG------------------------------------------------------------------------ENMVV  179 (301)
T ss_dssp             EEC------------------------------------------------------------------------GGGCE
T ss_pred             EEC------------------------------------------------------------------------CCCcE
Confidence            993                                                                        34579


Q ss_pred             EEeecCccccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCC-cCCCCCCCCCCCCchHHHH
Q 020248          138 KVVDFGNACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGD-MLFAPKSGQGFCEDEDHLA  211 (329)
Q Consensus       138 ~l~Dfg~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~-~pf~~~~~~~~~~~~~~l~  211 (329)
                      ||+|||++.....     ......+++.|+|||++.+..|+.++|||||||++|||++|. +||.+.      +..+.+.
T Consensus       180 Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~------~~~e~~~  253 (301)
T d1lufa_         180 KIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM------AHEEVIY  253 (301)
T ss_dssp             EECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS------CHHHHHH
T ss_pred             EEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC------CHHHHHH
Confidence            9999999854322     223456788999999999999999999999999999999985 567654      2333333


Q ss_pred             HHHHHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHH
Q 020248          212 LMMELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQC  291 (329)
Q Consensus       212 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~el  291 (329)
                      .+.+  |..                                       ...+...+.++.+||++||+.||++|||+.||
T Consensus       254 ~v~~--~~~---------------------------------------~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev  292 (301)
T d1lufa_         254 YVRD--GNI---------------------------------------LACPENCPLELYNLMRLCWSKLPADRPSFCSI  292 (301)
T ss_dssp             HHHT--TCC---------------------------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             HHHc--CCC---------------------------------------CCCCccchHHHHHHHHHHcCCChhHCcCHHHH
Confidence            3211  111                                       11234456789999999999999999999999


Q ss_pred             hc
Q 020248          292 LQ  293 (329)
Q Consensus       292 l~  293 (329)
                      ++
T Consensus       293 ~~  294 (301)
T d1lufa_         293 HR  294 (301)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-32  Score=245.02  Aligned_cols=174  Identities=26%  Similarity=0.408  Sum_probs=136.3

Q ss_pred             Cccccc-chhHHHHHHhhcC----------------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY----------------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTI   63 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~----------------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~   63 (329)
                      |||||| |++|.+++.....                ..+++..+..++.||+.||+|||++ |++||||||+||+++.  
T Consensus       104 lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~-~ivHrDLKp~NIl~~~--  180 (311)
T d1t46a_         104 VITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK-NCIHRDLAARNILLTH--  180 (311)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEET--
T ss_pred             EEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC-Ceeecccccccccccc--
Confidence            589999 8999999986532                2488999999999999999999995 9999999999999933  


Q ss_pred             CCCCCCCCCCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecC
Q 020248           64 DPSKDPIRSGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFG  143 (329)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg  143 (329)
                                                                                            ...++++|||
T Consensus       181 ----------------------------------------------------------------------~~~~ki~DfG  190 (311)
T d1t46a_         181 ----------------------------------------------------------------------GRITKICDFG  190 (311)
T ss_dssp             ----------------------------------------------------------------------TTEEEECCCG
T ss_pred             ----------------------------------------------------------------------cCcccccccc
Confidence                                                                                  4578999999


Q ss_pred             ccccccc-----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHh-CCcCCCCCCCCCCCCchHHHHHHHHHh
Q 020248          144 NACRANK-----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELAT-GDMLFAPKSGQGFCEDEDHLALMMELI  217 (329)
Q Consensus       144 ~a~~~~~-----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~-g~~pf~~~~~~~~~~~~~~l~~i~~~~  217 (329)
                      .+.....     ......||+.|+|||++.+..++.++|||||||++|+|++ |.+||...      .....+..++.. 
T Consensus       191 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~------~~~~~~~~~i~~-  263 (311)
T d1t46a_         191 LARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM------PVDSKFYKMIKE-  263 (311)
T ss_dssp             GGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC------CSSHHHHHHHHH-
T ss_pred             hheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC------CHHHHHHHHHhc-
Confidence            9965442     1233467889999999999999999999999999999998 56666554      222333333221 


Q ss_pred             CCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          218 GKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       218 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                      |.                                       ....+...+..+.+||.+||+.||++|||++||++
T Consensus       264 ~~---------------------------------------~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         264 GF---------------------------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             TC---------------------------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CC---------------------------------------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            00                                       00122334678999999999999999999999986

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-32  Score=244.80  Aligned_cols=174  Identities=20%  Similarity=0.297  Sum_probs=134.7

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCccc
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILE   79 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~   79 (329)
                      +||||| |++|.+++.... ..++...+..++.|++.||.|||++ +|+||||||+|||+                    
T Consensus       106 lv~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~-~iiHrDLK~~NILl--------------------  163 (311)
T d1r0pa_         106 VVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASK-KFVHRDLAARNCML--------------------  163 (311)
T ss_dssp             EEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEE--------------------
T ss_pred             EEEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhccc-CcccCCccHHhEeE--------------------
Confidence            589999 899999887653 4577888999999999999999995 99999999999999                    


Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-------cc
Q 020248           80 RPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-------QF  152 (329)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-------~~  152 (329)
                                                                          +....++|+|||++.....       ..
T Consensus       164 ----------------------------------------------------~~~~~~kL~DFG~~~~~~~~~~~~~~~~  191 (311)
T d1r0pa_         164 ----------------------------------------------------DEKFTVKVADFGLARDMYDKEFDSVHNK  191 (311)
T ss_dssp             ----------------------------------------------------CTTCCEEECSSGGGCCTTTTTCCCTTCT
T ss_pred             ----------------------------------------------------CCCCCEEEecccchhhccccccccceec
Confidence                                                                3345799999999965432       12


Q ss_pred             ccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCCCc
Q 020248          153 AEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQSK  232 (329)
Q Consensus       153 ~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  232 (329)
                      ....||..|+|||.+....++.++|||||||++|||++|..||....     ...+....+.  -|.             
T Consensus       192 ~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~-----~~~~~~~~i~--~g~-------------  251 (311)
T d1r0pa_         192 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-----NTFDITVYLL--QGR-------------  251 (311)
T ss_dssp             TCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-----------CHHHHH--TTC-------------
T ss_pred             ccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC-----CHHHHHHHHH--cCC-------------
Confidence            23467889999999999999999999999999999999877776431     1111111110  011             


Q ss_pred             cccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          233 DYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                                                ....+...+..+.+||.+||+.||++|||+.|+++|
T Consensus       252 --------------------------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         252 --------------------------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             --------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------------CCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                                      111233446789999999999999999999999987

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.6e-32  Score=244.99  Aligned_cols=179  Identities=21%  Similarity=0.366  Sum_probs=141.0

Q ss_pred             Cccccc-chhHHHHHHhhcC--------CCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRY--------KGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIR   71 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~--------~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~   71 (329)
                      +||||| +++|.+++.....        ..++...+..++.|++.||.|||++ +|+||||||+|||+            
T Consensus       100 lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~-~ivHrDlk~~NiLl------------  166 (308)
T d1p4oa_         100 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN-KFVHRDLAARNCMV------------  166 (308)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT-TCBCSCCSGGGEEE------------
T ss_pred             EEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC-CeeeceEcCCceee------------
Confidence            589999 8999998875421        2368889999999999999999995 99999999999999            


Q ss_pred             CCCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc-
Q 020248           72 SGLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK-  150 (329)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~-  150 (329)
                                                                                  +....+||+|||++..... 
T Consensus       167 ------------------------------------------------------------d~~~~~Kl~DFGla~~~~~~  186 (308)
T d1p4oa_         167 ------------------------------------------------------------AEDFTVKIGDFGMTRDIYET  186 (308)
T ss_dssp             ------------------------------------------------------------CTTCCEEECCTTCCCGGGGG
T ss_pred             ------------------------------------------------------------cCCceEEEeecccceeccCC
Confidence                                                                        3356899999999954432 


Q ss_pred             ----ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhC-CcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHH
Q 020248          151 ----QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATG-DMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIA  225 (329)
Q Consensus       151 ----~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  225 (329)
                          ......+|+.|+|||.+.+..++.++|||||||++|||++| ..||.+.      +....+..+..  |.      
T Consensus       187 ~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~------~~~~~~~~i~~--~~------  252 (308)
T d1p4oa_         187 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL------SNEQVLRFVME--GG------  252 (308)
T ss_dssp             GCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS------CHHHHHHHHHT--TC------
T ss_pred             cceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC------CHHHHHHHHHh--CC------
Confidence                23344678999999999999999999999999999999998 4677655      23333333321  10      


Q ss_pred             hcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc------CCCcCC
Q 020248          226 IGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ------HPWLSL  299 (329)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~------hpwf~~  299 (329)
                                                       ....+..++..+.+||.+||+.||++|||+.||++      +|+|+.
T Consensus       253 ---------------------------------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         253 ---------------------------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             ---------------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             ---------------------------------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence                                             11123445678999999999999999999999987      677753

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=5.1e-31  Score=237.02  Aligned_cols=184  Identities=18%  Similarity=0.225  Sum_probs=137.6

Q ss_pred             CcccccchhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCCCCCCCCCCCCCCcccC
Q 020248            1 MVLEFLGDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLVSTIDPSKDPIRSGLTPILER   80 (329)
Q Consensus         1 lV~e~~g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~~~~~~~~~~~~~~~~~~~~~   80 (329)
                      +||||||++|.+++.... ..++...+..++.|++.||+|||++ ||+||||||+||+++....                
T Consensus        78 ~vme~~~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH~~-giiHrDiKp~Nili~~~~~----------------  139 (293)
T d1csna_          78 LVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEK-SLVYRDIKPDNFLIGRPNS----------------  139 (293)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTT-TEECCCCCGGGEEECCSSS----------------
T ss_pred             EEEEecCCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHC-CceeccCCccceeecCccc----------------
Confidence            589999999999987643 4699999999999999999999995 9999999999999943210                


Q ss_pred             CCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc----------
Q 020248           81 PEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK----------  150 (329)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~----------  150 (329)
                                                                         .....++|+|||.|.....          
T Consensus       140 ---------------------------------------------------~~~~~vkl~DFG~a~~~~~~~~~~~~~~~  168 (293)
T d1csna_         140 ---------------------------------------------------KNANMIYVVDFGMVKFYRDPVTKQHIPYR  168 (293)
T ss_dssp             ---------------------------------------------------TTTTCEEECCCTTCEESBCTTTCCBCCCC
T ss_pred             ---------------------------------------------------ccCCceEEcccceeEEcccCccccceeec
Confidence                                                               1235799999999965432          


Q ss_pred             ccccCCCCCCCcchHHhhcCCCCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCCchHHHHHHHHHhCCCcHHHHhcCCC
Q 020248          151 QFAEEIQTRQYRAPEVILRAGYSFSVDMWSFACTAFELATGDMLFAPKSGQGFCEDEDHLALMMELIGKMPRKIAIGGAQ  230 (329)
Q Consensus       151 ~~~~~~~~~~y~aPE~~~~~~~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  230 (329)
                      ......||+.|+|||++.+..++.++|||||||++|+|++|..||.+....   ........+....-..|         
T Consensus       169 ~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~---~~~~~~~~i~~~~~~~~---------  236 (293)
T d1csna_         169 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA---TNKQKYERIGEKKQSTP---------  236 (293)
T ss_dssp             CCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC---CHHHHHHHHHHHHHHSC---------
T ss_pred             ccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccch---hHHHHHHHHHhccCCCC---------
Confidence            223457899999999999999999999999999999999999999865311   11111222211100000         


Q ss_pred             CccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhc
Q 020248          231 SKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQ  293 (329)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~  293 (329)
                                           ..++       ....++++.+|+..|+..+|++||+...+.+
T Consensus       237 ---------------------~~~l-------~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         237 ---------------------LREL-------CAGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             ---------------------HHHH-------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ---------------------hHHh-------cCCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                                 0111       1234568999999999999999999777644

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=239.74  Aligned_cols=188  Identities=20%  Similarity=0.221  Sum_probs=131.4

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHh-------hCCccccCCCCCceeeecCCCCCCCCCCC
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHR-------ELGIIHTDLKPENILLVSTIDPSKDPIRS   72 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~-------~~giiH~Dlk~~Nil~~~~~~~~~~~~~~   72 (329)
                      |||||| +++|.+++...   .++...+..++.|++.||+|+|+       +.||+||||||+|||+             
T Consensus        78 lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl-------------  141 (303)
T d1vjya_          78 LVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV-------------  141 (303)
T ss_dssp             EEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEE-------------
T ss_pred             EEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEE-------------
Confidence            589999 89999999874   48999999999999999999996       1389999999999999             


Q ss_pred             CCCCcccCCCCCCCCCCCchhHHHHHHHHHHhhhhccchhhcccccCCccCCCCCccCCCCCCceEEeecCccccccc--
Q 020248           73 GLTPILERPEGSINGGSTSTMTIVEKKLKRRAKRAVANISIRRASMGGIELPKPERCLDGIDMRCKVVDFGNACRANK--  150 (329)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dfg~a~~~~~--  150 (329)
                                                                                 +....+||+|||++.....  
T Consensus       142 -----------------------------------------------------------~~~~~~Kl~DFGl~~~~~~~~  162 (303)
T d1vjya_         142 -----------------------------------------------------------KKNGTCCIADLGLAVRHDSAT  162 (303)
T ss_dssp             -----------------------------------------------------------CTTSCEEECCCTTCEEEETTT
T ss_pred             -----------------------------------------------------------cCCCCeEEEecCccccccCCC
Confidence                                                                       3356899999999854432  


Q ss_pred             -----ccccCCCCCCCcchHHhhcCC------CCccchHHHHHHHHHHHHhCCcCCCCCCCCCCCC-----chHHHHHHH
Q 020248          151 -----QFAEEIQTRQYRAPEVILRAG------YSFSVDMWSFACTAFELATGDMLFAPKSGQGFCE-----DEDHLALMM  214 (329)
Q Consensus       151 -----~~~~~~~~~~y~aPE~~~~~~------~s~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~-----~~~~l~~i~  214 (329)
                           ......||+.|+|||++.+..      ++.++|||||||++|||++|..||..........     .......+.
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (303)
T d1vjya_         163 DTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMR  242 (303)
T ss_dssp             TEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHH
T ss_pred             cceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHH
Confidence                 223457899999999987653      5678999999999999999998886543211100     000001110


Q ss_pred             HHhCCCcHHHHhcCCCCccccCccCchhhhccccccchhHHHhhhcCCChhhHHHHHHHHhhccCCCCCCCcCHHHHhcC
Q 020248          215 ELIGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFWSLDRLLVDKYRFSETDAREFAEFLVPLLDFTPEKRPTAQQCLQH  294 (329)
Q Consensus       215 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~ta~ell~h  294 (329)
                      ...-.                  .+.     +   ......     ..+......+.+||.+||+.||++|||+.||+++
T Consensus       243 ~~~~~------------------~~~-----~---p~~~~~-----~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         243 KVVCE------------------QKL-----R---PNIPNR-----WQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             HHHTT------------------SCC-----C---CCCCGG-----GGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             HHHhc------------------ccc-----C---CCCCcc-----cCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            00000                  000     0   000000     0122345679999999999999999999999763

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.39  E-value=1.5e-14  Score=120.27  Aligned_cols=50  Identities=24%  Similarity=0.477  Sum_probs=41.1

Q ss_pred             Cccccc-chhHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeee
Q 020248            1 MVLEFL-GDSLLRLIKYSRYKGLELNKVREICKYILTGLDYLHRELGIIHTDLKPENILLV   60 (329)
Q Consensus         1 lV~e~~-g~sL~~~~~~~~~~~l~~~~~~~i~~qll~al~~lH~~~giiH~Dlk~~Nil~~   60 (329)
                      |||||+ +..+.         .++...+..++.|++.++.|||++ ||+||||||+|||+.
T Consensus        87 lvme~~~~~~~~---------~l~~~~~~~i~~ql~~~l~~lH~~-giiHrDiKP~NILv~  137 (191)
T d1zara2          87 VLMELIDAKELY---------RVRVENPDEVLDMILEEVAKFYHR-GIVHGDLSQYNVLVS  137 (191)
T ss_dssp             EEEECCCCEEGG---------GCCCSCHHHHHHHHHHHHHHHHHT-TEECSCCSTTSEEEE
T ss_pred             EEEEeecccccc---------chhhHHHHHHHHHHHHHHHHHhhC-CEEEccCChhheeee
Confidence            478888 43321         256677889999999999999995 999999999999994

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.96  E-value=0.021  Score=48.72  Aligned_cols=15  Identities=40%  Similarity=0.908  Sum_probs=14.0

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      |+||+|++++||++.
T Consensus       184 giIHgDl~~dNvl~~  198 (316)
T d2ppqa1         184 GVIHADLFQDNVFFL  198 (316)
T ss_dssp             EEECSCCCGGGEEEE
T ss_pred             ccccCCcchhhhhcc
Confidence            799999999999994

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=85.34  E-value=0.14  Score=43.59  Aligned_cols=14  Identities=36%  Similarity=0.366  Sum_probs=13.4

Q ss_pred             CccccCCCCCceee
Q 020248           46 GIIHTDLKPENILL   59 (329)
Q Consensus        46 giiH~Dlk~~Nil~   59 (329)
                      ++||+|+++.||++
T Consensus       193 ~liHgDlh~~NvL~  206 (325)
T d1zyla1         193 LRLHGDCHAGNILW  206 (325)
T ss_dssp             EECCSSCSGGGEEE
T ss_pred             eeecCCCCcccEEE
Confidence            68999999999999

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.65  E-value=0.19  Score=40.87  Aligned_cols=14  Identities=36%  Similarity=0.503  Sum_probs=13.0

Q ss_pred             ccccCCCCCceeee
Q 020248           47 IIHTDLKPENILLV   60 (329)
Q Consensus        47 iiH~Dlk~~Nil~~   60 (329)
                      +||+|+++.||++.
T Consensus       185 l~HgD~~~~Nil~~  198 (263)
T d1j7la_         185 FSHGDLGDSNIFVK  198 (263)
T ss_dssp             EECSCCCTTSEEEE
T ss_pred             EEEeeccCcceeec
Confidence            79999999999993

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=84.13  E-value=0.17  Score=41.04  Aligned_cols=15  Identities=27%  Similarity=0.279  Sum_probs=13.4

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||+|+++.||++.
T Consensus       176 ~liHgD~~~~Nvl~~  190 (255)
T d1nd4a_         176 VVTHGDACLPNIMVE  190 (255)
T ss_dssp             EEECSSCCGGGEEEE
T ss_pred             eEEeCCCCCcceEEe
Confidence            379999999999993

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=81.22  E-value=0.29  Score=42.82  Aligned_cols=15  Identities=33%  Similarity=0.532  Sum_probs=13.7

Q ss_pred             CccccCCCCCceeee
Q 020248           46 GIIHTDLKPENILLV   60 (329)
Q Consensus        46 giiH~Dlk~~Nil~~   60 (329)
                      .+||||+++.|||+.
T Consensus       224 ~LiHGDl~~gNIlv~  238 (392)
T d2pula1         224 TLIHGDLHTGSIFAS  238 (392)
T ss_dssp             EEECSCCCGGGEEEC
T ss_pred             ceeccCCcCCceeEc
Confidence            589999999999993