Query 020249
Match_columns 329
No_of_seqs 121 out of 136
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.5 0.0017 5.9E-08 54.0 3.5 37 32-68 90-126 (127)
2 1zr9_A Zinc finger protein 593 94.8 0.014 4.9E-07 49.3 2.8 38 32-69 47-84 (124)
3 1zu1_A DSRBP-ZFA, RNA binding 94.6 0.02 7E-07 47.5 3.1 35 35-69 32-66 (127)
4 3eph_A TRNA isopentenyltransfe 94.3 0.021 7.2E-07 56.6 3.1 37 34-70 359-401 (409)
5 2yrk_A Zinc finger homeobox pr 81.6 0.91 3.1E-05 33.5 2.7 34 35-68 13-46 (55)
6 3cw1_L U1 small nuclear ribonu 80.3 0.93 3.2E-05 35.4 2.5 31 36-66 4-36 (77)
7 4dgw_A PRE-mRNA-splicing facto 73.6 1.3 4.6E-05 43.7 2.1 38 31-68 288-325 (402)
8 2xus_A Breast cancer metastasi 32.7 84 0.0029 22.5 5.0 32 256-287 13-46 (49)
9 2djr_A Zinc finger BED domain- 24.4 45 0.0015 25.6 2.5 31 34-66 27-65 (76)
10 2kvo_A Photosystem II reaction 20.8 35 0.0012 28.7 1.4 13 231-243 87-99 (120)
11 3gs2_B Chromobox protein homol 20.8 34 0.0012 22.2 1.0 10 204-213 19-28 (30)
12 4f9c_B Protein DBF4 homolog A; 20.7 40 0.0014 28.6 1.8 28 34-64 86-113 (144)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.47 E-value=0.0017 Score=53.99 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCCceeecCcccccCchhhHHhhCChHHHHHHHHhh
Q 020249 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (329)
Q Consensus 32 ~~G~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v~~lk 68 (329)
..+.+.|.+|++.+.++..+..|+.||.|+.++.+++
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 4678899999999999999999999999999998764
No 2
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.82 E-value=0.014 Score=49.28 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCCceeecCcccccCchhhHHhhCChHHHHHHHHhhh
Q 020249 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (329)
Q Consensus 32 ~~G~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v~~lk~ 69 (329)
..++..|..|+....+++.+..|.+||.|+.++..|+.
T Consensus 47 GekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 47 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 46889999999999999999999999999999999973
No 3
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=94.55 E-value=0.02 Score=47.45 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecCcccccCchhhHHhhCChHHHHHHHHhhh
Q 020249 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (329)
Q Consensus 35 ~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v~~lk~ 69 (329)
.+.|.+|++.+.+++.-..|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987764
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.30 E-value=0.021 Score=56.56 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=31.9
Q ss_pred CCceeecCcc------cccCchhhHHhhCChHHHHHHHHhhhh
Q 020249 34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG 70 (329)
Q Consensus 34 G~L~C~lC~~------~vKsEslW~aH~~Sk~Hr~~v~~lk~~ 70 (329)
-+-+|-+|+. .+-.|--|..|+.|+.||.++.+.++.
T Consensus 359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~ 401 (409)
T 3eph_A 359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ 401 (409)
T ss_dssp CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3458999997 788899999999999999999987653
No 5
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=81.63 E-value=0.91 Score=33.50 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=28.4
Q ss_pred CceeecCcccccCchhhHHhhCChHHHHHHHHhh
Q 020249 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (329)
Q Consensus 35 ~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v~~lk 68 (329)
++.|.+|++.--+=.--.-||.|++|-.+|..+-
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v 46 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETV 46 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTT
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHHH
Confidence 4899999987666666889999999999998653
No 6
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=80.28 E-value=0.93 Score=35.42 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=26.4
Q ss_pred ceeecCcccccCc--hhhHHhhCChHHHHHHHH
Q 020249 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKN 66 (329)
Q Consensus 36 L~C~lC~~~vKsE--slW~aH~~Sk~Hr~~v~~ 66 (329)
--|--|+.-|.+. +.|..|+.|++|+.|+..
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~ 36 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKD 36 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHH
Confidence 3699999999555 458999999999999986
No 7
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=73.59 E-value=1.3 Score=43.72 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCCCCceeecCcccccCchhhHHhhCChHHHHHHHHhh
Q 020249 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (329)
Q Consensus 31 n~~G~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v~~lk 68 (329)
+..+.+-|..|....+++.+-.+|+.||+|..++++.+
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k 325 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHH
Confidence 35678999999999999999999999999998877644
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=32.66 E-value=84 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.034 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHH
Q 020249 256 EIDAAEMIEEYESVDQK--EKVEALRKKKKEWEA 287 (329)
Q Consensus 256 ee~a~~eRe~~Ei~EQi--~Rve~Lk~kk~~~~~ 287 (329)
++=+..+++-.++-||+ .|+..|+.++++++.
T Consensus 13 d~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 13 SEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455678888999999 999999999999865
No 9
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.36 E-value=45 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=22.0
Q ss_pred CCceeecCccccc--------CchhhHHhhCChHHHHHHHH
Q 020249 34 DQPVCRVCDVVLK--------SDSQWDAHQASRKHHEAIKN 66 (329)
Q Consensus 34 G~L~C~lC~~~vK--------sEslW~aH~~Sk~Hr~~v~~ 66 (329)
..-.|.+|+..|. +=.||. ||. ..|...++.
T Consensus 27 ~~A~Ck~C~k~ls~g~~s~~GTS~L~r-HL~-~~H~~e~~~ 65 (76)
T 2djr_A 27 QYATCRLCGRQVSRGPGVNVGTTALWK-HLK-SMHREELEK 65 (76)
T ss_dssp SCEEESSSCCBCCCCSSCCSSSCHHHH-HHH-HTTHHHHHH
T ss_pred CEEECCCCCCccCCCCCCCCchHHHHH-HHH-HHCHHHHHh
Confidence 3689999999987 234553 664 668777775
No 10
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=20.83 E-value=35 Score=28.65 Aligned_cols=13 Identities=8% Similarity=0.560 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 020249 231 KDEYKEYEKLIQE 243 (329)
Q Consensus 231 ~~Ew~~FqkeI~e 243 (329)
+++|++||+.|.-
T Consensus 87 ~~~WdRFMRFMeR 99 (120)
T 2kvo_A 87 QPEWDRFMRFMER 99 (120)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7899999999974
No 11
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=20.76 E-value=34 Score=22.18 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.9
Q ss_pred cCCCCCCCCC
Q 020249 204 GALPEGFFDN 213 (329)
Q Consensus 204 ~~LPeGFFDd 213 (329)
...|+|||.+
T Consensus 19 ~~~p~gff~~ 28 (30)
T 3gs2_B 19 AQAAEGFFRD 28 (30)
T ss_dssp ESCSTTTSCC
T ss_pred cCCCcccccc
Confidence 4589999976
No 12
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=20.67 E-value=40 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCceeecCcccccCchhhHHhhCChHHHHHH
Q 020249 34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAI 64 (329)
Q Consensus 34 G~L~C~lC~~~vKsEslW~aH~~Sk~Hr~~v 64 (329)
..-.|-.|.+...+ -..|+.|.+|+.-+
T Consensus 86 k~GyCE~C~~~y~~---l~~H~~s~~Hr~fa 113 (144)
T 4f9c_B 86 KKGYCECCLQKYED---LETHLLSEQHRNFA 113 (144)
T ss_dssp --CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred CCCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence 34589999888775 57999999999655
Done!