BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020250
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 177/318 (55%), Gaps = 27/318 (8%)
Query: 2 GKWAIAVHGGAGV--DPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELE 59
GK IA+HGGAG + +Q++ + L+ + G L + A+DVV VR LE
Sbjct: 1 GKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLE 60
Query: 60 TDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
PLFN+G G+ T + T E++A +MDG + GAV+G++ ++NP+ ARLVME+SPH
Sbjct: 61 ECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVM 120
Query: 120 LAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAA 179
+ GAE FA +G+E E F T L A++ + + D+ A
Sbjct: 121 MIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHS------------GA 168
Query: 180 ATDSPLQMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTY 239
D +M VG V +D +G AAATSTGG+ NK GR+GDSPL+GAG Y
Sbjct: 169 PLDEKQKMG----------AVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCY 218
Query: 240 ASNL-CGVSCTGEGEAIIRATLARDVAAVMEYKGLCLQEAVDFVIKERLDE--GQAGLIA 296
A+N VSCTG GE IRA A D+AA+M+Y GL L EA + V+ E+L G GLIA
Sbjct: 219 ANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIA 278
Query: 297 VSKNGEVACGFNANGMFR 314
+ G VA FN GM+R
Sbjct: 279 IDHEGNVALPFNTEGMYR 296
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 126/165 (76%), Gaps = 1/165 (0%)
Query: 1 MGKWAIAVHGGAGVDP-NLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELE 59
MG W+IA+HGGAG P +LP +R++ ++ L CL +G+ AL++ P +DVVELVVRELE
Sbjct: 4 MGGWSIALHGGAGDIPFSLPPERRKPREEGLRHCLQIGVEALKAQKPPLDVVELVVRELE 63
Query: 60 TDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
FN+G GS LT +GTVEMEASIMDG +CGAVSGL+TV NPISLARLVM+K+PH Y
Sbjct: 64 NIEHFNAGIGSVLTNSGTVEMEASIMDGNTMKCGAVSGLSTVLNPISLARLVMDKTPHIY 123
Query: 120 LAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDY 164
LAF GA++FA+QQGVE D+ + IT ENV LKLA EAN + DY
Sbjct: 124 LAFQGAQDFAKQQGVETVDSSHLITAENVERLKLAIEANRVQVDY 168
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 175/328 (53%), Gaps = 30/328 (9%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VHGG G P + R+E Q + R +G LR A+D VE V LE DP FN
Sbjct: 5 VVVHGG-GAGP-ISKDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFN 62
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGA 125
+G GS L NG VEM+ASIMDG GAVS + + NPI LARLVMEK+PH +L GA
Sbjct: 63 AGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGA 122
Query: 126 EEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPL 185
+FA GV E +TE N +L KE + GA TD
Sbjct: 123 AQFAAAMGVPEIPGEKLVTERN--KKRLEKEKH----------------EKGAQKTD--C 162
Query: 186 QMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG 245
Q N L + TVG V +D +G A ATSTGG++NK GR+GDSP +GAG YA N G
Sbjct: 163 QKN-LGHHHHHHMTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIG 221
Query: 246 -VSCTGEGEAIIRATLARDVAAVMEYKGLCLQEAVDF---VIKERLDEGQAGLIAVSKNG 301
VS TG GE+I++ LAR +E +G ++EA D +K R+ +G GLI VSK G
Sbjct: 222 AVSTTGHGESILKVNLARLTLFHIE-QGKTVEEAADLSLGYMKSRV-KGLGGLIVVSKTG 279
Query: 302 EVACGFNANGMFRGCATEDGFMEVGIWP 329
+ + + M A +DG + GI P
Sbjct: 280 DWVAKWTSTSMPW-AAAKDGKLHFGIDP 306
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 172/328 (52%), Gaps = 37/328 (11%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VHGG G P + R+E Q + R +G LR A+D VE V LE DP FN
Sbjct: 7 VVVHGG-GAGP-ISKDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFN 64
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGA 125
+G GS L NG VEM+ASIMDG GAVS + + NPI LARLVMEK+PH +L GA
Sbjct: 65 AGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGA 124
Query: 126 EEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPL 185
+FA GV E +TE N +L KE + GA TD
Sbjct: 125 AQFAAAMGVPEIPGEKLVTERN--KKRLEKEKH----------------EKGAQKTDCQK 166
Query: 186 QMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG 245
+ TVG V +D +G A ATSTGG++NK GR+GDSP +GAG YA N G
Sbjct: 167 NLG----------TVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIG 216
Query: 246 -VSCTGEGEAIIRATLARDVAAVMEYKGLCLQEAVDF---VIKERLDEGQAGLIAVSKNG 301
VS TG GE+I++ LAR +E +G ++EA D +K R+ +G GLI VSK G
Sbjct: 217 AVSTTGHGESILKVNLARLTLFHIE-QGKTVEEAADLSLGYMKSRV-KGLGGLIVVSKTG 274
Query: 302 EVACGFNANGMFRGCATEDGFMEVGIWP 329
+ + + M A +DG + GI P
Sbjct: 275 DWVAKWTSTSMPW-AAAKDGKLHFGIDP 301
>pdb|2GEZ|B Chain B, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|D Chain D, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|F Chain F, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|H Chain H, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 133
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 104/131 (79%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCGVSCTGEGEAIIRA 258
TVGCV VD G A+ATSTGGL+NK GRIGD+PLIGAGTYA+ LC VS TG+GE IIRA
Sbjct: 1 TVGCVAVDSHGNLASATSTGGLVNKMVGRIGDTPLIGAGTYANELCAVSATGKGEEIIRA 60
Query: 259 TLARDVAAVMEYKGLCLQEAVDFVIKERLDEGQAGLIAVSKNGEVACGFNANGMFRGCAT 318
T+ARDVAA+ME+KGL L+EA DFVI ER +G GLIAVS GE+A FN GMFR CAT
Sbjct: 61 TVARDVAALMEFKGLSLKEAADFVIHERTPKGTVGLIAVSAAGEIAMPFNTTGMFRACAT 120
Query: 319 EDGFMEVGIWP 329
EDG+ E+ IWP
Sbjct: 121 EDGYSEIAIWP 131
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 171/328 (52%), Gaps = 37/328 (11%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VHGG G P + R+E Q + R +G LR A+D VE V LE DP FN
Sbjct: 16 VVVHGG-GAGP-ISKDRKERVHQGMVRAATVGYGILREGGSAVDAVEGAVVALEDDPEFN 73
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGA 125
+G GS L NG VEM+ASIMDG GAVS + + NPI LARLVMEK+PH +L GA
Sbjct: 74 AGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLTDQGA 133
Query: 126 EEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPL 185
+FA GV E +TE N +L KE + GA TD
Sbjct: 134 AQFAAAMGVPEIPGEKLVTERN--KKRLEKEKH----------------EKGAQKTDCQK 175
Query: 186 QMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG 245
+ VG V +D +G A ATSTGG++NK GR+GDSP +GAG YA N G
Sbjct: 176 NLG----------AVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIG 225
Query: 246 -VSCTGEGEAIIRATLARDVAAVMEYKGLCLQEAVDF---VIKERLDEGQAGLIAVSKNG 301
VS TG GE+I++ LAR +E +G ++EA D +K R+ +G GLI VSK G
Sbjct: 226 AVSTTGHGESILKVNLARLTLFHIE-QGKTVEEAADLSLGYMKSRV-KGLGGLIVVSKTG 283
Query: 302 EVACGFNANGMFRGCATEDGFMEVGIWP 329
+ + + M A +DG + GI P
Sbjct: 284 DWVAKWTSTSM-PWAAAKDGKLHFGIDP 310
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNL-CGVSCTGEGEAIIR 257
TVG V +D +G AAATSTGG+ NK GR+GDSPL+GAG YA+N VSCTG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 258 ATLARDVAAVMEYKGLCLQEAVDFVIKERLDE--GQAGLIAVSKNGEVACGFNANGMFR 314
A A D+AA+M+Y GL L EA + V+ E+L G GLIA+ G VA FN GM+R
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYR 119
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNL-CGVSCTGEGEAIIR 257
TVG V +D +G AAATSTGG+ NK GR+GDSPL+GAG YA+N VSCTG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 258 ATLARDVAAVMEYKGLCLQEAVDFVIKERLDE--GQAGLIAVSKNGEVACGFNANGMFR 314
A A D+AA+M+Y GL L EA + V+ E+L G GLIA+ G VA FN GM+R
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYR 119
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNL-CGVSCTGEGEAIIR 257
TVG V +D +G AAATSTGG+ NK GR+GDSPL+GAG YA+N VSCTG GE IR
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 258 ATLARDVAAVMEYKGLCLQEAVDFVIKERLDE--GQAGLIAVSKNGEVACGFNANGMFR 314
A A D+AA+M+Y GL L EA + V+ E+L G GLIA+ G VA FN GM+R
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYR 119
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 141/305 (46%), Gaps = 55/305 (18%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 4 KPIVLSTFNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 63
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 64 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 119
Query: 139 NEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPLQMNGLPISLYAPE 198
E +T E+ KE L + P+ +++ +
Sbjct: 120 KENLLTAES------EKEWKEWL----------------KTSQYKPI------VNIENHD 151
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
T+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 152 TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 211
Query: 258 ATLARDVAAVMEYKGLCLQ---EAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M Q EAV+ ++K + L + Q G IA++K GE +
Sbjct: 212 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 271
Query: 304 ACGFN 308
GFN
Sbjct: 272 QDGFN 276
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 140/305 (45%), Gaps = 55/305 (18%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 4 KPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 63
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 64 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 119
Query: 139 NEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPLQMNGLPISLYAPE 198
E +T E+ KE L + P+ +++
Sbjct: 120 KENLLTAES------EKEWKEWL----------------KTSQYKPI------VNIENHN 151
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
T+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 152 TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 211
Query: 258 ATLARDVAAVMEYKGLCLQ---EAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M Q EAV+ ++K + L + Q G IA++K GE +
Sbjct: 212 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 271
Query: 304 ACGFN 308
GFN
Sbjct: 272 QDGFN 276
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 140/305 (45%), Gaps = 55/305 (18%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 4 KPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 63
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 64 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 119
Query: 139 NEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPLQMNGLPISLYAPE 198
E +T E+ KE L + P+ +++ +
Sbjct: 120 KENLLTAES------EKEWKEWL----------------KTSQYKPI------VNIENHD 151
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 152 AIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 211
Query: 258 ATLARDVAAVMEYKGLCLQ---EAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M Q EAV+ ++K + L + Q G IA++K GE +
Sbjct: 212 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 271
Query: 304 ACGFN 308
GFN
Sbjct: 272 QDGFN 276
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 140/305 (45%), Gaps = 55/305 (18%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 8 KPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 67
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 68 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 123
Query: 139 NEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPLQMNGLPISLYAPE 198
E +T E+ KE L + P+ +++ +
Sbjct: 124 KENLLTAES------EKEWKEWL----------------KTSQYKPI------VNIENHD 155
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 156 CIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 215
Query: 258 ATLARDVAAVMEYKGLCLQ---EAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M Q EAV+ ++K + L + Q G IA++K GE +
Sbjct: 216 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 275
Query: 304 ACGFN 308
GFN
Sbjct: 276 QDGFN 280
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 140/305 (45%), Gaps = 55/305 (18%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 4 KPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 63
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 64 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 119
Query: 139 NEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCSAGAAATDSPLQMNGLPISLYAPE 198
E +T E+ KE L + P+ +++ +
Sbjct: 120 KENLLTAES------EKEWKEWL----------------KTSQYKPI------VNIENHD 151
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 152 CIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 211
Query: 258 ATLARDVAAVMEYKGLCLQ---EAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M Q EAV+ ++K + L + Q G IA++K GE +
Sbjct: 212 TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 271
Query: 304 ACGFN 308
GFN
Sbjct: 272 QDGFN 276
>pdb|1JN9|A Chain A, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|C Chain C, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|A Chain A, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|C Chain C, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 177
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 2 GKWAIAVHGGAGV--DPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELE 59
GK IA+HGGAG + +Q++ + L+ + G L + A+DVV VR LE
Sbjct: 1 GKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLE 60
Query: 60 TDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
PLFN+G G+ T + T E++A +MDG + GAV+G++ ++NP+ ARLVME+SPH
Sbjct: 61 EXPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVM 120
Query: 120 LAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDY 164
+ GAE FA +G+E E F T L A++ + + D+
Sbjct: 121 MIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDH 165
>pdb|1T3M|A Chain A, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|C Chain C, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 177
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Query: 2 GKWAIAVHGGAGV--DPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELE 59
GK IA+HGGAG + +Q++ + L+ + G L + A+DVV VR LE
Sbjct: 1 GKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLE 60
Query: 60 TDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
PLFN+G G+ T + T E++A +MDG + GAV+G++ ++NP+ ARLVME+SPH
Sbjct: 61 ECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVM 120
Query: 120 LAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDY 164
+ GAE FA +G+E E F T L A++ + + D+
Sbjct: 121 MIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDH 165
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 126/281 (44%), Gaps = 30/281 (10%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VH GAG + + K + R I L++ A D V + ELE P N
Sbjct: 44 VLVHAGAGYHSE---SKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTN 100
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLA-RLVME---------KS 115
+G GS L G +E +ASIMDG GAV L+ +KNP+S+A RL+ E +
Sbjct: 101 AGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRI 160
Query: 116 PHSYLAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCS 175
P +L GA +A G+ T ++ K K + R+ + F
Sbjct: 161 PPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKR--KLELAERV-DTDFMQLK 217
Query: 176 AGAAATDSPLQMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIG 235
+++ L +TVG VVVD EG AAA S+GGL K GR+G + L G
Sbjct: 218 KRRQSSEKENDSGTL-------DTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYG 270
Query: 236 AGTYASNL-------CGVSCTGEGEAIIRATLARDVAAVME 269
G +A N VS +G GE ++R LAR+ + ++
Sbjct: 271 CGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2ZAL|C Chain C, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|A Chain A, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 160
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 2 GKWAIAVHGGAGV--DPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELE 59
GK IA+HGGAG + +Q++ + L+ + G L + A+DVV VR LE
Sbjct: 1 GKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLE 60
Query: 60 TDPLFNSGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
PLFN+G G+ T + T E++A +MDG + GAV+G++ ++NP+ ARLVME+SPH
Sbjct: 61 ECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVM 120
Query: 120 LAFSGAEEFARQQGVELFDNEYFIT 144
+ GAE FA +G+E E F T
Sbjct: 121 MIGEGAENFAFARGMERVSPEIFST 145
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 126/281 (44%), Gaps = 30/281 (10%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VH GAG + + K + R I L++ A D V + ELE P N
Sbjct: 44 VLVHAGAGYHSE---SKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTN 100
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLA-RLVME---------KS 115
+G GS L G +E +ASIMDG GAV L+ +KNP+S+A RL+ E +
Sbjct: 101 AGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRI 160
Query: 116 PHSYLAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCS 175
P +L GA +A G+ T ++ K K + R+ + F
Sbjct: 161 PPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKR--KLELAERV-DTDFMQLK 217
Query: 176 AGAAATDSPLQMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIG 235
+++ L ++VG VVVD EG AAA S+GGL K GR+G + L G
Sbjct: 218 KRRQSSEKENDSGTL-------DSVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYG 270
Query: 236 AGTYASNL-------CGVSCTGEGEAIIRATLARDVAAVME 269
G +A N VS +G GE ++R LAR+ + ++
Sbjct: 271 CGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 125/281 (44%), Gaps = 30/281 (10%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VH GAG + + K + R I L++ A D V + ELE P N
Sbjct: 44 VLVHAGAGYHSE---SKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTN 100
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLA-RLVME---------KS 115
+G GS L G +E +ASIMDG GAV L+ +KNP+S+A RL+ E +
Sbjct: 101 AGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRI 160
Query: 116 PHSYLAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCS 175
P +L GA +A G+ T ++ K K + R+ + F
Sbjct: 161 PPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKR--KLELAERV-DTDFMQLK 217
Query: 176 AGAAATDSPLQMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIG 235
+++ L + VG VVVD EG AAA S+GGL K GR+G + L G
Sbjct: 218 KRRQSSEKENDSGTL-------DAVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYG 270
Query: 236 AGTYASNL-------CGVSCTGEGEAIIRATLARDVAAVME 269
G +A N VS +G GE ++R LAR+ + ++
Sbjct: 271 CGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 125/281 (44%), Gaps = 30/281 (10%)
Query: 6 IAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFN 65
+ VH GAG + + K + R I L++ A D V + ELE P N
Sbjct: 44 VLVHAGAGYHSE---SKAKEYKHVCKRACQKAIEKLQAGALATDAVTAALVELEDSPFTN 100
Query: 66 SGRGSALTENGTVEMEASIMDGPKRRCGAVSGLTTVKNPISLA-RLVME---------KS 115
+G GS L G +E +ASI DG GAV L+ +KNP+S+A RL+ E +
Sbjct: 101 AGXGSNLNLLGEIECDASIXDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKGKLSAGRI 160
Query: 116 PHSYLAFSGAEEFARQQGVELFDNEYFITEENVGMLKLAKEANSILFDYRIPNGGFETCS 175
P +L GA +A G+ T ++ K K + R+ + F
Sbjct: 161 PPCFLVGEGAYRWAVDHGIPSCPPNIXTTRFSLAAFKRNKR--KLELAERV-DTDFXQLK 217
Query: 176 AGAAATDSPLQMNGLPISLYAPETVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIG 235
+++ L +TVG VVVD EG AAA S+GGL K GR+G + L G
Sbjct: 218 KRRQSSEKENDSGTL-------DTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYG 270
Query: 236 AGTYASNL-------CGVSCTGEGEAIIRATLARDVAAVME 269
G +A N VS +G GE ++R LAR+ + ++
Sbjct: 271 CGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ 311
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 27 KQLLTRCLNLGISA-------LRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTV 78
K ++ N G+ A L A+D VE VR +E DP S G G +G V
Sbjct: 4 KPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRV 63
Query: 79 EMEASIMDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFD 138
++A IMD G+V+ + +KNPIS+AR VMEK+PH L GA EFA QG F
Sbjct: 64 TLDACIMD-ENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQG---FK 119
Query: 139 NEYFITEEN 147
E +T E+
Sbjct: 120 KENLLTAES 128
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIR 257
T+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 1 TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR 60
Query: 258 ATLARDVAAVMEY----KGLCLQEAVDFVIK------ERLDEGQAGLIAVSKNGE----- 302
V +M + C +EAV+ ++K + L + Q G IA++K GE
Sbjct: 61 TVGTHLVVELMNQGRTPQQAC-KEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 119
Query: 303 VACGFN 308
+ GFN
Sbjct: 120 IQDGFN 125
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 200 VGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTYASNLCG-VSCTGEGEAIIRA 258
+G + +D +G + A +T G+ K GR+GDSP+IGAG + N G + TG GE +IR
Sbjct: 2 IGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRT 61
Query: 259 TLARDVAAVMEY----KGLCLQEAVDFVIK------ERLDEGQAGLIAVSKNGE-----V 303
V +M + C +EAV+ ++K + L + Q G IA++K GE +
Sbjct: 62 VGTHLVVELMNQGRTPQQAC-KEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI 120
Query: 304 ACGFN 308
GFN
Sbjct: 121 QDGFN 125
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 199 TVGCVVVDQEGRCAAATSTGGLMNKRTGRIGDSPLIGAGTY 239
T+G VV+ + G AA TST G+ K GR+GDSP+ GAG Y
Sbjct: 1 TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAY 41
>pdb|1APY|A Chain A, Human Aspartylglucosaminidase
pdb|1APY|C Chain C, Human Aspartylglucosaminidase
pdb|1APZ|A Chain A, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|C Chain C, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 162
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 40 ALRSNCPAIDVVELVVRELETDPLFNS-GRGSALTENGTVEMEASIMDGPKRRCGAVSGL 98
AL S A+D VE E + S G G + E G ++A IMDG GAV L
Sbjct: 23 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL 82
Query: 99 TTVKNPISLARLVMEKSPHSYLAFSGAEEFARQQGVELFDNEYFITEENVGMLK--LAKE 156
+KN I +AR V+E + H+ L A FA+ G F NE T + + LA+
Sbjct: 83 RRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMG---FINEDLSTSASQALHSDWLARN 139
Query: 157 ANSILFDYRIPN 168
+ IP+
Sbjct: 140 CQPNYWRNVIPD 151
>pdb|3OYX|A Chain A, Haloferax Volcanii Malate Synthase MagnesiumGLYOXYLATE
COMPLEX
pdb|3OYZ|A Chain A, Haloferax Volcanii Malate Synthase PyruvateACETYL-Coa
Ternary Complex
pdb|3PUG|A Chain A, Haloferax Volcanii Malate Synthase Native At 3mm
Glyoxylate
Length = 433
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 26 AKQLLTRCLNLGISALRSNCPAIDVVELVVRELETDPLFNSGRGS-ALTENGTVEMEASI 84
A++L L + L S P++D + + E E +GRG+ A+T++ T+ + +
Sbjct: 321 ARELTADELREELLGLTSYVPSMDDIVDSMEEFEA--AKEAGRGAIAMTQSATLRIGGTE 378
Query: 85 MDGPKRRCGAVSGLTTVKNPISLARLVMEKSPHSY 119
+D K R + PISL + V E P +
Sbjct: 379 IDIEKDRMWDEATYQAAMTPISLFQDVYENRPDQH 413
>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
Imidazole
pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
Length = 414
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ALTENGTVEMEASIMDGPKRRCGA--VSGLTTVKNPISLARLVMEKSP 116
++ NG V D KR CGA V GL TV N +S + + KSP
Sbjct: 221 SIVANGQVNGRPITSDEAKRMCGALLVGGLDTVVNFLSFSMEFLAKSP 268
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 4 WAIAVHGGAGVDPNLPVQRQEAAKQLLTRCLNLGISALRSNCPAIDVVEL 53
WAI V GGAGV + P+ A +TR L L + AI +EL
Sbjct: 372 WAIQVCGGAGVSQDYPLANMYA----ITRVLRLADGPDEVHLSAIATMEL 417
>pdb|2QBL|A Chain A, Crystal Structure Of Ferric G248t Cytochrome P450cam
pdb|2QBM|A Chain A, Crystal Structure Of The P450cam G248t Mutant In The
Cyanide Bound State
Length = 421
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ALTENGTVEMEASIMDGPKRRCGA--VSGLTTVKNPISLARLVMEKSP 116
++ NG V D KR CG V+GL TV N +S + + KSP
Sbjct: 222 SIVANGQVNGRPITSDEAKRMCGLLLVTGLDTVVNFLSFSMEFLAKSP 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,722,188
Number of Sequences: 62578
Number of extensions: 396889
Number of successful extensions: 888
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 45
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)