BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020252
(328 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 216/315 (68%), Positives = 255/315 (80%), Gaps = 12/315 (3%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62
VLD+EKLRLPS EA S+++A N WTY G++LATETL TSDEAVIAAA+
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAA 109
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAAL+V + SA+ +SK ++S + + S W Q TE ERA IIGD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESK--LTSPSTIDASRWPQFTETERARIIGD 167
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
SV E P EE S Q + +S LE TH+EL+LL++Q+S+ IAVRSRRQTERKARR RA
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA++V+SVK GSTS++KR S+QEVDYSDPLRYLR TTS+SRLLTA+EE++LSA IQDL
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L+ER GG PTFAQWAAAAGVDQR LR+R+N+G +CKDKMI SNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 303 KNYQGAGMNLQDLVQ 317
KNYQGAGMNLQDLVQ
Sbjct: 348 KNYQGAGMNLQDLVQ 362
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 219/317 (69%), Positives = 258/317 (81%), Gaps = 1/317 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAA 60
T VLD+EKLRLPSLE HS++++ANR WTY G +GP + GTSLA ETL +DEAVIAA
Sbjct: 44 TAVLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAA 103
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
A+AEAVALARAAVKVAKDAA M +++S K ++K I+S+ D+ +SMW+ LTE+ERA II
Sbjct: 104 AAAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADII 163
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
GDSV E EEYS Q P + LEPT EEL LL++Q+S+ IAVRS+RQTERKARR R
Sbjct: 164 GDSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRAR 223
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEKAAANV+SVKSGSTS++KR +QEVD SDPLR+ R +SSSRLL+A EE++LS GIQ
Sbjct: 224 AAEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQ 283
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE + E L ER GG P+FAQWAAAAGVDQ LR+RLNYGILCKDKMI SN+RLVIS
Sbjct: 284 DLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVIS 343
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAKNYQG GMNLQDLVQ
Sbjct: 344 IAKNYQGTGMNLQDLVQ 360
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 197/315 (62%), Positives = 242/315 (76%), Gaps = 8/315 (2%)
Query: 3 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAAS 62
T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA IAAA+
Sbjct: 67 TTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEASIAAAA 118
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ERA IIG+
Sbjct: 119 AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGE 178
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKARRTRAA
Sbjct: 179 PVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAA 238
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS GIQDL
Sbjct: 239 EKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDL 298
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVISIA
Sbjct: 299 LKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIA 358
Query: 303 KNYQGAGMNLQDLVQ 317
KNYQGAGMNLQDLVQ
Sbjct: 359 KNYQGAGMNLQDLVQ 373
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 211/315 (66%), Positives = 249/315 (79%), Gaps = 1/315 (0%)
Query: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAAAS 62
VL++EKLRLPSLE+HS+++AANR WTY G +GP E GTSLATETL +DEAVIAAA+
Sbjct: 43 VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 102
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAVALARAAVKVAKDAA M ++ S ++K I+S+AD+ +SMW+ LT +ERA IIG
Sbjct: 103 AEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGV 162
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
S E EE S Q P +S PTHEEL LLE+Q+S+SI VRS+RQT+RKA+R RAA
Sbjct: 163 SFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAA 222
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAAAN + +KSGS ++KR VQEVD SDPLR+ R ++SSRLL+A EE++LS GIQDL
Sbjct: 223 EKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDL 282
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LKLE + E L ER GG PTFAQWAAAA VDQ LR+RLNY ILCKDKMI SNIRLVISIA
Sbjct: 283 LKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIA 342
Query: 303 KNYQGAGMNLQDLVQ 317
KNYQGAGMNLQDLVQ
Sbjct: 343 KNYQGAGMNLQDLVQ 357
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 224/318 (70%), Positives = 252/318 (79%), Gaps = 2/318 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 51 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 110
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 111 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 170
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 171 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 230
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 231 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 290
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 291 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 350
Query: 300 SIAKNYQGAGMNLQDLVQ 317
SIAKNYQGAGMN+QDLVQ
Sbjct: 351 SIAKNYQGAGMNIQDLVQ 368
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 224/318 (70%), Positives = 252/318 (79%), Gaps = 2/318 (0%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
T VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAA
Sbjct: 54 TAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAA 113
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASI 119
A+AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I
Sbjct: 114 AAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGI 173
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRT 179
+GDSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR
Sbjct: 174 LGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRA 233
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
RAAEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GI
Sbjct: 234 RAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGI 293
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
QDLLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVI
Sbjct: 294 QDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVI 353
Query: 300 SIAKNYQGAGMNLQDLVQ 317
SIAKNYQGAGMN+QDLVQ
Sbjct: 354 SIAKNYQGAGMNIQDLVQ 371
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 234/324 (72%), Gaps = 16/324 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T+ LDV KLRLPS + S++ ++R WTY +GPSTE +LA+ETL TSDEAV+A
Sbjct: 49 LTSTLDVAKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVA 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAA+KVAKDA L N HN+ K ++SS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAALKVAKDATLFGNSHNT-----KLSVSSAADKR-SKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTER 174
+G D+ +V S + S DL P ++ E++S S AVRS RQTER
Sbjct: 163 LGHLAVSDTGVVSDRITAPGSLECNKEASDDLTPAEKQE---VEKLSVSSAVRSTRQTER 219
Query: 175 KARRTRAAEKAAANVMS-VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
KARR + EK A+ + S VK+GS+SR+KR + QE+D++DPLRYLR TTSSS+LLTA EE
Sbjct: 220 KARRVKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQ 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
QLS GIQDLLKLE L+ L+ERCG PTF+QWA+AAGVD++ LR+R+ +G CKD+MI S
Sbjct: 280 QLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
NIRLVISIAKNYQGAGM+ QDLVQ
Sbjct: 340 NIRLVISIAKNYQGAGMDFQDLVQ 363
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 191/321 (59%), Positives = 232/321 (72%), Gaps = 10/321 (3%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ISS+AD S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNT-----NLLISSTADKR-SKWDQFTEKERAGI 162
Query: 120 IGDSVIVEAAPEEEYSEQQPLNKSA--DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKA 176
+G + + + NK + DLE +E L E+ S S+AVRS RQTERKA
Sbjct: 163 LGHLAVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKA 222
Query: 177 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 236
RR + EK A+ + SVK+GS R+KR QEVD++DPLRYLR TTSSS+LLT EE +LS
Sbjct: 223 RRAKGLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELS 282
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
AGIQDLLKLE L+ L+ERCG PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIR
Sbjct: 283 AGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIR 342
Query: 297 LVISIAKNYQGAGMNLQDLVQ 317
LVISIAKNYQGAGMNLQDLVQ
Sbjct: 343 LVISIAKNYQGAGMNLQDLVQ 363
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 188/324 (58%), Positives = 233/324 (71%), Gaps = 16/324 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
NIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 186/325 (57%), Positives = 230/325 (70%), Gaps = 29/325 (8%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAA 60
+T+L +EK +L +L+A S+ N W Y A N ++L+ E+L T++EAVI A
Sbjct: 47 STLLSLEK-KL-ALDAPSDP---NTSWPYIAAA------NFKSTLSAESLLTNEEAVIVA 95
Query: 61 ASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
A++EA+ALA+AA KVAKDAAL+V A+ + K +SS +D W + E +
Sbjct: 96 AASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVA 155
Query: 121 GDSVI--------VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQT 172
+S+ V+ +P EE S DLEP+HEEL+ L+EQ+S SIAVRSRRQT
Sbjct: 156 EESMGAGAEIMEGVDVSPSEEES---------DLEPSHEELERLQEQLSDSIAVRSRRQT 206
Query: 173 ERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 232
ERKA+R RA EKA N S K GS+SRRKR S+QEVDYSDPLRYLR TTS+SRLLT EE
Sbjct: 207 ERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEE 266
Query: 233 MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
++LSAGIQDLLKLE ++E L+ER G PTFAQWAA AGVDQ+ LR+RLNYGI CKDKMI
Sbjct: 267 IKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIK 326
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SNIRLVISIAKNYQG+GMNLQDLVQ
Sbjct: 327 SNIRLVISIAKNYQGSGMNLQDLVQ 351
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 231/324 (71%), Gaps = 16/324 (4%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N + + ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNYTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S +AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVGLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEH 279
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI S
Sbjct: 280 ELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKS 339
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
NIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 340 NIRLVISIAKNYQGAGMNLQDLVQ 363
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 188/326 (57%), Positives = 233/326 (71%), Gaps = 18/326 (5%)
Query: 1 MTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIA 59
+T++LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+
Sbjct: 49 LTSMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVV 108
Query: 60 AASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASI 119
AA+AEAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I
Sbjct: 109 AAAAEAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGI 162
Query: 120 IG-----DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTE 173
+G D+ IV S ++ + DLE +E L E+ S S+AVRS RQTE
Sbjct: 163 LGHLAVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTE 219
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRL--LTANE 231
RKARR + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+L LT E
Sbjct: 220 RKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVRE 279
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E +LSAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI
Sbjct: 280 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 339
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
SNIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 340 KSNIRLVISIAKNYQGAGMNLQDLVQ 365
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 213/317 (67%), Gaps = 9/317 (2%)
Query: 2 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 61
T++ DVEKLRLP +E++SN+++A Q T+ +G E T+L + L +E + AA
Sbjct: 60 TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 62 SAEAVALARAAVKVAKDAA-LMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 120
+A A A LM + KP SK S + AQL E E+ +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSG----AQLLENEQ---V 172
Query: 121 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 180
G E + E E +++ AD+EPT EEL+LLE ++ +SI VRS RQ ERKARR R
Sbjct: 173 GSMRNFEGS-ENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AAEK A+NV+SVK GS SR+KR SVQEVDYSDPLRYLR T+SSRLLT++EE +LSAGIQ
Sbjct: 232 AAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQ 291
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L + L R G SP+F QWAAAAG+DQR LRRRLN+G CKDKMI SN+RLVIS
Sbjct: 292 DLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVIS 351
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAKNYQG+GMNLQDLVQ
Sbjct: 352 IAKNYQGSGMNLQDLVQ 368
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 120/174 (68%), Positives = 145/174 (83%), Gaps = 1/174 (0%)
Query: 145 DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRP 203
D EPT EEL+ +EEQ+ SI RS RQTERKARR RA+ KAA N++S +SGST+R+KR
Sbjct: 192 DDEPTSEELEDVEEQLYDTSIDARSGRQTERKARRVRASGKAATNIVSFRSGSTTRKKRV 251
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
QEVDYSDPLRYLR TT ++RLLT +EE++ S GIQDL+KLE L+E L+E+CGG PTFA
Sbjct: 252 RTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFA 311
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
QWA AGVDQ+ LR+RLNYG+ CK+KMI SNIRLVIS+AKNYQG+GM+LQDLVQ
Sbjct: 312 QWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQ 365
>gi|449523964|ref|XP_004168993.1| PREDICTED: RNA polymerase sigma factor sigB-like, partial [Cucumis
sativus]
Length = 296
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 174/238 (73%), Gaps = 8/238 (3%)
Query: 3 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAAS 62
T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA IAAA+
Sbjct: 67 TTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEASIAAAA 118
Query: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 122
AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ERA IIG+
Sbjct: 119 AEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGE 178
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKARRTRAA
Sbjct: 179 PVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAA 238
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
EK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS GIQ
Sbjct: 239 EKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQ 296
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/161 (55%), Positives = 116/161 (72%), Gaps = 3/161 (1%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTE +ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q +Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+Q
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 218
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+Q
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQ 329
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 112/166 (67%), Gaps = 11/166 (6%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMS---VKSGSTSRRKRPSVQEVDYSDPLRYL 217
S ++AV+S R+TERKARR RAA KAA S V + ST +++ Q PL
Sbjct: 165 SIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ-----TPLGCF 219
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
T RLLTA +E++ S GIQDLLKLE +++ +++ GG PTF+QWAAAAG D+ LR
Sbjct: 220 YKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLR 278
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
RRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+Q +Q L
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGL 324
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 123/171 (71%), Gaps = 12/171 (7%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANVM-SVKSGSTSRRKR---PSVQEVDYSD 212
++Q +++IAV+S RQ+ER+ARRTRA KAA V S+K ++S++KR PS +
Sbjct: 184 DKQDAENIAVKSARQSERRARRTRATMKAAITVRGSLKLVTSSKKKRSKGPSTM-----N 238
Query: 213 PLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD 272
PL L T +LLTA EE++LS GIQDLLKLE ++ L+E GG PTF QWAAAAG D
Sbjct: 239 PLGSLWKMTGR-KLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTD 297
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
+ LR+RL++GI CK++M+TSN+RLVISIA+ ++G G+ L DL+Q +Q L
Sbjct: 298 ENTLRKRLDHGIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGL 348
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQL 318
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQV 355
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 117/161 (72%), Gaps = 3/161 (1%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q +Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 117/161 (72%), Gaps = 3/161 (1%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q +Q L
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 360
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 117/161 (72%), Gaps = 3/161 (1%)
Query: 163 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 222
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 200 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 259
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 260 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q +Q L
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGL 359
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 67/77 (87%)
Query: 241 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
DLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVIS
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 301 IAKNYQGAGMNLQDLVQ 317
I KNYQGAGMNLQDLVQ
Sbjct: 63 IXKNYQGAGMNLQDLVQ 79
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+Q
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 129 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 184
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 185 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 243
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+Q
Sbjct: 244 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 287
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 8/164 (4%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 213
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGW-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+Q
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQ 330
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 130/190 (68%), Gaps = 8/190 (4%)
Query: 132 EEYSEQQPLNKSADLEPTH----EELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA 187
+EYS+ L DLE +H +E++L + Q +SIAV+S RQ+ER+ARRTRAA KAA
Sbjct: 157 DEYSDDVLLE---DLESSHGVLNDEVELDDTQDYKSIAVKSERQSERRARRTRAAIKAAT 213
Query: 188 NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 247
V S + ++S +K+ S +PL L T +LLTA EE++LS GIQDLLKLE
Sbjct: 214 TVRSSQKLASSSKKKRSKGPTTSMNPLGSLWKLTGR-KLLTAKEEVELSNGIQDLLKLEA 272
Query: 248 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
++ L+E G PTF QWAAAAG D++ LR+RL +GI K++M+TSN+RLVISIA+ ++G
Sbjct: 273 IQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAHGIYSKNRMVTSNVRLVISIAREFEG 332
Query: 308 AGMNLQDLVQ 317
G+ L DL+Q
Sbjct: 333 PGLELYDLIQ 342
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 154/286 (53%), Gaps = 28/286 (9%)
Query: 36 PSTEENLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMV-NHHNSAKPKSK 94
PS L E L + EAV+AAA+ + +L A +VA + A M N H +A P
Sbjct: 56 PSPHRTLPGCFG-EALLNKEAVVAAAAGKP-SLWLAQAEVAGEVARMAQNDHPAALPPRD 113
Query: 95 PAISSSADTNTSMWAQLTERERASIIGDSV-IVEAAPEEEYSEQQPLNKSADLEPTHEEL 153
DT S ++ R + +VE EE+S D + H
Sbjct: 114 -------DTVDSFLSREVLRSEVGLDARRAGLVEMLEGEEHSSIFSDESEDDDDGGH--- 163
Query: 154 KLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVK--SGSTSRRKRPSVQEVDYS 211
S ++ V+S R++ER+ARR RAA K A S+K S++RRKR
Sbjct: 164 -------SIAVTVKSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLK----GCL 212
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
PL L T RLLTA +E++ S GIQDLLKLE +++ +++ G PTF+QWAAAAG
Sbjct: 213 TPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGT 271
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+Q
Sbjct: 272 DENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQ 317
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S++RRKR PL L T RLLTA +E++ S GIQDLLKLE +++ +++
Sbjct: 102 SSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQY 156
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL
Sbjct: 157 NAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDL 216
Query: 316 VQ 317
+Q
Sbjct: 217 IQ 218
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 89/134 (66%), Gaps = 7/134 (5%)
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
M S++RRKR PL L T RLLTA +E++ S GIQDLLKLE ++
Sbjct: 196 MKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQ 250
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 251 KEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 310
Query: 310 MNLQDLVQ--LQAL 321
M DL+Q +Q L
Sbjct: 311 MEFSDLIQDGMQGL 324
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 88/136 (64%), Gaps = 5/136 (3%)
Query: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A K+ + V + S++R+KR PL T RLLTA +E++ S GIQD
Sbjct: 3 AAKSFSGRNPVAASSSARKKRLK----GCRSPLGCFYKMTGR-RLLTAKQEVEFSQGIQD 57
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
LLKLE +++ L+ GG PTF+QWA AAG D+ LR+RLNYGI CK+ M+ SN+RLVISI
Sbjct: 58 LLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISI 117
Query: 302 AKNYQGAGMNLQDLVQ 317
A+ ++G GM DL+Q
Sbjct: 118 AREFEGPGMEFSDLIQ 133
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 76/102 (74%), Gaps = 2/102 (1%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S+ RLLTA +E++LS GIQD LKLE +++ ++ GG PTF QWAAAAG D+ LR+RL+
Sbjct: 232 SARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLS 291
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
YGI CK+ M+ SN+RLVISIAK ++G G DL+Q +Q L
Sbjct: 292 YGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGL 333
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 227 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 286
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 287 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 345
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q
Sbjct: 346 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQ 385
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 217
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 130 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 189
Query: 218 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 277
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 190 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 248
Query: 278 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q
Sbjct: 249 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQ 288
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 103/158 (65%), Gaps = 5/158 (3%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRA 219
S +IAVRS R+ ER +R RA KA + + S +++ +P+ D DP+R YLR
Sbjct: 255 SYNIAVRSNRRRERLLKRERALVKADKAATAPPTTSKAKKSQPAY---DPQDPVRAYLR- 310
Query: 220 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 279
++LLT++EE++L+ GIQDLL++E ++ L E+ G PT +WA A G ++ L R
Sbjct: 311 DIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESR 370
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G CKD+M+ SN+RLV+SIAK YQG GM +QDL+Q
Sbjct: 371 IKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQ 408
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 166 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 213
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 214 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 273
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 274 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 333
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 12/180 (6%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
D SDP+R YLR ++LLTA EE+ LS IQDLLKLE ++ L G + T +W+
Sbjct: 259 DPSDPVRAYLR-DIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSR 317
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A G++Q RL G KDKM+ SN+RLV+SIAKNYQG GM LQDL+Q
Sbjct: 318 AVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 12/180 (6%)
Query: 138 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 197
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S+RK + + + R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRSRR R++ RA + + S S +KR S Q D +DPLR + +
Sbjct: 176 VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLS-QGFDPNDPLRLFLWGPETKQ 234
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L A IQDL+ LEG++ L + G PT +WA A G+ L+ +L+ G
Sbjct: 235 LLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNR 294
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++K+I +N+R+V+ IAK YQ G+ LQDL+Q
Sbjct: 295 SREKLINANLRMVVHIAKRYQNRGLGLQDLLQ 326
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 61 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 120
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 121 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 180
Query: 312 LQDLVQ 317
QDL+Q
Sbjct: 181 FQDLIQ 186
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 1/126 (0%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 45 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 104
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 105 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 164
Query: 312 LQDLVQ 317
QDL+Q
Sbjct: 165 FQDLIQ 170
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 11/171 (6%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPL-RYLRA 219
S+++AV+S R+ ER +R RA EKA ++ S + S+ + SDP+ YLR
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGKVAFALASSPPVPKADKSLIKHRLSDPICSYLR- 265
Query: 220 TTSSSRLLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+S+LLTA EE+ LS IQ LKLE +R L G PT ++W+ A G
Sbjct: 266 DVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVG 325
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
++Q R+ G KDK++ SN+RLV+SI KNYQG GM L DL+Q +L
Sbjct: 326 MNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSL 376
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR ++LL+A+EE+ LS IQD+LKLE +R L G PT ++W+ A
Sbjct: 268 SDPIRSYLR-DIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAV 326
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ L R+ G KDK++ SN+RLV+SI KNYQG GM L DL+Q
Sbjct: 327 SLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQ 374
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 7/155 (4%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS+RQ ER+A+ RA + + G ++ K+ Q VD D L+
Sbjct: 187 VRSKRQLERRAKNRRAPKSNDVD----NEGYVPQKINAKKKFKQGVDTDDALQLFLWGPE 242
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ +L+ ++
Sbjct: 243 TKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHR 302
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G ++K+IT+N+RLV+ IAK YQ G+N QDL+Q
Sbjct: 303 GRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 337
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
SRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 54 SRRKESATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHE 113
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 114 SRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 173
Query: 317 Q 317
Q
Sbjct: 174 Q 174
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++K+IT+N+RLV+ IAK YQ G+N QDL+Q
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 225
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 128 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 186
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 187 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 246
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++K+IT+N+RLV+ IAK YQ G+N QDL+Q
Sbjct: 247 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 278
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 89/149 (59%)
Query: 169 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 228
RR +RK +++ + + R ++ +E+D DPLR + +LLT
Sbjct: 214 RRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLT 273
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E QL + IQDLL+LE ++ L + G PT A+WA AG++ R L+ +L+ G ++
Sbjct: 274 LEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSRE 333
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+I +N+R+V+ +AK+YQG G++LQDL+Q
Sbjct: 334 KLIQANLRMVVHVAKSYQGRGLSLQDLLQ 362
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 6/162 (3%)
Query: 159 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR--PSVQE-VDYSDPLR 215
++ +SI ++ RR +RK ++ + + K + RR R ++E +D + LR
Sbjct: 190 KIVRSIRLKERRSKQRKVSNSKVLDD---EMYLTKKSNVQRRLRLEKKLKEGLDGNHALR 246
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
+ + +LL+ EE QL A IQDL KL+ + L G PT A+WA G+ R+
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L++RL+ G KDK+I +N+RLV+ IAK YQG G++LQDL+Q
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQ 348
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 160 VSQSIAVRSRRQTERKARRTRAAEKAAAN---VMSVKSGSTS--RRKRPSVQEVDYSDPL 214
+ ++ VRS R ER++++ + + + ++ K + R ++ +E D DPL
Sbjct: 69 IGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPL 128
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R + +LLT +E QL + IQDLL+LE ++ L + G PT A+WA AG++ R
Sbjct: 129 RLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCR 188
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+ +L+ GI ++K+I +N+R+V+ +AK+YQG G++LQDL+Q
Sbjct: 189 LLQSQLHSGIRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQ 231
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS+RQ ER+A+ RA + +N M + G ++ K+ Q D D L+
Sbjct: 188 VRSKRQLERRAKNRRAPK---SNNMDSE-GYVPQKINAKKKMKQGFDTDDALQLFLWGPE 243
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L A IQ L+KLE ++ L + G PT +WA A G+ L+ ++
Sbjct: 244 TKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHR 303
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G ++K+IT+N+RLV+ IAK YQ G+N QDL+Q
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQ 338
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 6/176 (3%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
+ + ++ +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQ 364
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 5/157 (3%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE-----VDYSDPLRYLRAT 220
VRS R ER+A+ + + + + G + ++ VQ+ ++ SDPL +
Sbjct: 202 VRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQS 261
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
S +LLT+ +E QL IQ+LL+LE L+ L + G PT A+WA AG++ R+++ +L
Sbjct: 262 PESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQL 321
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G ++K+I +N+RLV IAK+YQG G++++DL+Q
Sbjct: 322 RCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQ 358
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 87/149 (58%)
Query: 169 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 228
RR +RK +++ + + R ++ +E+D +DPL + + +LLT
Sbjct: 217 RRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLT 276
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+E QL + IQDLL+LE ++ L + G PT A+WA G++ R L +L G ++
Sbjct: 277 LEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSRE 336
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+I +N+R+V+ +AK+YQG G++LQDL+Q
Sbjct: 337 KLIQANLRMVVHVAKSYQGRGLSLQDLLQ 365
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ P+ ++ D +R RLL A EE++L+ I DLL+LE +RE ++E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G PT +W+ A ++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDL 172
Query: 316 VQ 317
+Q
Sbjct: 173 IQ 174
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSPTFAQWAA 267
+DP+R YLR ++LLTA+EE+ LS IQ DLL LE ++ L G P+ +W+
Sbjct: 273 TDPVRAYLR-DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSR 331
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A G++Q R+ G KDKM+ SN+RLV+SI KNYQG GM L DL+Q
Sbjct: 332 AVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQ 381
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 96/178 (53%), Gaps = 11/178 (6%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR-- 200
S LEPT LEE + VRS R+ ER+++ R + +SRR
Sbjct: 170 STGLEPTDLSNFSLEEVKT----VRSTRRLERQSKNRRVTKTKEI----FHEPYSSRRAG 221
Query: 201 -KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 259
++ + D DPLR + +LLTA EE +L +QDL+ LE ++E + G
Sbjct: 222 VQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRD 281
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT +WA A G+ ++ +L+ G ++K+I +N+R+V+ IAK YQG G++LQDL+Q
Sbjct: 282 PTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQ 339
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 166 VRSRRQTERKARRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
VRS R +R++++ + + + +S G SRRK + ++ D +DPLR +
Sbjct: 203 VRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRK--TSEKFDPNDPLRLFLWGPETK 260
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLTA EE +L IQDL+ L+ ++ L + PT +WA A G+ + L+ +L+
Sbjct: 261 KLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQ 320
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
++K+I +N+R+V+ IAK YQG G++L DL+Q+ +L
Sbjct: 321 TSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSL 357
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 204 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 257
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 258 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 317
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLN 325
G + K+I +N+R+V+ IAK YQG G+NLQDL+Q ++ +N
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMN 360
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 166 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 222
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 215 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 268
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 269 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 328
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLN 325
G + K+I +N+R+V+ IAK YQG G+NLQDL+Q ++ +N
Sbjct: 329 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMN 371
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 11/157 (7%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 256 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 307
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 308 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 367
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+G C+D+++ S LV+ IA+NY+G G+ +D++Q
Sbjct: 368 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 404
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Query: 200 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 259
RK+P + D +R RLL A EE++L+ I DLL+LE +RE +++R
Sbjct: 55 RKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERY 109
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
P+ A+WA + E RRRL YG KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 110 PSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 167
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 11/157 (7%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 220
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 206 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 257
Query: 221 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 280
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 258 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 317
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+G C+D+++ S LV+ IA+NY+G G+ +D++Q
Sbjct: 318 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQ 354
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P+ ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 60 KSGKAAKSRRRTPTAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVR 119
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
+ L ++ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 DRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
Query: 310 MNLQDLVQ 317
++ QDL+Q
Sbjct: 180 LSFQDLIQ 187
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 185 AAANVMSVKS---GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+V S KS +T RR+ S ++ D +R RLL A EE++L+ I D
Sbjct: 45 GVADVSSKKSRKLSATPRRRGQSKKKPFTEDSIRVYLQEIGRIRLLRAEEEIELARQIAD 104
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R L E G PT +WA A+ + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 105 LLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVS 164
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAK Y G++ QDL+Q
Sbjct: 165 IAKKYMNRGLSFQDLIQ 181
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 14/183 (7%)
Query: 146 LEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTS------- 198
L+ H KLL + + +RS+R ER++++ A ++ + + ST
Sbjct: 174 LDLNHSYEKLLSKG---QVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALCGVVD 230
Query: 199 ----RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
+ + + +D +P + ++ LTA EE QL + +Q+L+KLE + L
Sbjct: 231 TKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEA 290
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+CG P +WA A G+ ++L+ ++ G C++KM SN RLVI +A+ YQG G++++D
Sbjct: 291 QCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIED 350
Query: 315 LVQ 317
LVQ
Sbjct: 351 LVQ 353
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 3/126 (2%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K G T R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 64 KGGKT--RRRAQTKKKQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK 121
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 311
LS+R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 122 LSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 181
Query: 312 LQDLVQ 317
QDL+Q
Sbjct: 182 FQDLIQ 187
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE LS+
Sbjct: 62 GVKSRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQ 121
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P ++WA A V + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 122 QLDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 181
Query: 315 LVQ 317
L+Q
Sbjct: 182 LIQ 184
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 191 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
+ K+ ST RR +P + D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 ATKARSTRRRAQPKKKHY-TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L + P A+WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 HLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 176 SFQDLIQ 182
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 KLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 63 GVAKSRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLV 122
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E P +WA+A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 123 EHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 182
Query: 314 DLVQ 317
DL+Q
Sbjct: 183 DLIQ 186
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 193 KSGST--SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSGS R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 59 KSGSKVAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L E P +WA A G+ R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 EQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQ 317
++ QDL+Q
Sbjct: 179 LSFQDLIQ 186
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 193 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
KSG + SRR+ P ++ Y+ D +R RLL A+EE++L+ I +LL+LE R
Sbjct: 59 KSGKAAKSRRRTPIAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERAR 118
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L ER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 ERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 310 MNLQDLVQ 317
++ QDL+Q
Sbjct: 179 LSFQDLIQ 186
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 119
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 120 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 179
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 180 SFQDLIQ 186
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 78/144 (54%), Gaps = 12/144 (8%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEM 233
KA+ TR A K A RR+ ++ Y+ D +R RLL A EE+
Sbjct: 67 KAKATRGAAKGKA-----------RRRTAQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEI 115
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
+L+ I DLL+LE +R+ + ++ PT A WA A + RRRL G KDKM+ S
Sbjct: 116 ELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQS 175
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
N+RLV+SIAK Y G++ QDL+Q
Sbjct: 176 NLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 75/135 (55%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
E A A K +SRR+ S ++ D +R RLL A EE++L+ I DL
Sbjct: 35 EDAIAEPEDRKVRGSSRRRETSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADL 94
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE + E L +R G P +WA A ++ +RRL G KDKM+ SN+RLV+SIA
Sbjct: 95 LELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIA 154
Query: 303 KNYQGAGMNLQDLVQ 317
K Y G++ QDL+Q
Sbjct: 155 KKYMNRGLSFQDLIQ 169
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 58 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 117
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 118 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 177
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 178 SFQDLIQ 184
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 62 KSGKAAKSRRRSQNKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 121
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L ++ P +++WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 122 RLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 181
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 182 SFQDLIQ 188
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 197 TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
T+ R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 50 TATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 316 VQ 317
+Q
Sbjct: 170 IQ 171
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 191 SVKSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 58 DTKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 117
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
R+ L E+ P + +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 118 RDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNR 177
Query: 309 GMNLQDLVQ 317
G++ QDL+Q
Sbjct: 178 GLSFQDLIQ 186
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 70/122 (57%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S +RR+ ++ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 51 SATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 316 VQ 317
+Q
Sbjct: 171 IQ 172
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G TSRR+ + ++ D +R RLL A EE++L+ I DLL+LE + + L+E
Sbjct: 45 GKTSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAE 104
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
P A+WA A + + +RRL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 105 TLQRDPQDAEWAEAVDMPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 164
Query: 315 LVQ 317
L+Q
Sbjct: 165 LIQ 167
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 200 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L ++
Sbjct: 59 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDR 118
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P A+WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 119 TPQDAEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 177
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Query: 201 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
KRPS +D +R S LL A +E++L+ IQDL+ LE +RE L E G
Sbjct: 196 KRPS------TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 261 TFA--QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ QWAAAAG++ LR+RL+ G K++MI +N+RLV+SIAK Y M+ QDL+Q
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQ 308
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 192 VKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
VK+G + R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +R
Sbjct: 54 VKAGKVVKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVR 113
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E L +R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 EQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 173
Query: 310 MNLQDLVQ 317
++ QDL+Q
Sbjct: 174 LSFQDLIQ 181
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA + + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 170
Query: 315 LVQ 317
L+Q
Sbjct: 171 LIQ 173
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 10/137 (7%)
Query: 186 AANVMSVKSGSTSRR----KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A+N + K +T RR K+P + D +R RLL A EE++L+ I D
Sbjct: 55 ASNKKARKLPATRRRTQTKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIAD 109
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 300
LL LE +R E G PT +WA A + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 110 LLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIGRRAKDKMVQSNLRLVVS 169
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAK Y G++ QDL+Q
Sbjct: 170 IAKKYMNRGLSFQDLIQ 186
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 22/192 (11%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 201
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 103 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 157
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD----------------LLKL 245
+ + ++ +P + ++ LTA EE L + IQ L+K+
Sbjct: 158 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKI 217
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E L +CG PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y
Sbjct: 218 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 277
Query: 306 QGAGMNLQDLVQ 317
+G G+++QDLVQ
Sbjct: 278 EGYGLDIQDLVQ 289
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G ++RR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE LSE
Sbjct: 46 GRSNRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 105
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ P +WA ++ R RL+ G K+KM+ SN+RLV+SIAK Y G++ QD
Sbjct: 106 QLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 165
Query: 315 LVQ 317
L+Q
Sbjct: 166 LIQ 168
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 157 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRKRPSVQEVDYSDPLR 215
E Q + VRS R ER+++R A + A+V S + + + + ++ +P +
Sbjct: 152 ELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFK 211
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQD----------------LLKLEGLREVLSERCGGS 259
++ LTA EE L + IQ L+K+E L +CG
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQ 329
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ LS++
Sbjct: 48 STRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQL 107
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 108 EREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 167
Query: 317 Q 317
Q
Sbjct: 168 Q 168
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 177 SFQDLIQ 183
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 185 AAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
A ++ +KSG ++ R R + ++ Y+ D +R RLL A+EE++L+ I DL
Sbjct: 47 AQSDEDDLKSGKVAKSRTRTAGKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADL 106
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE +RE L P ++WA A ++ + +RRL G K+KM+ SN+RLV+SIA
Sbjct: 107 LELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIA 166
Query: 303 KNYQGAGMNLQDLVQ 317
K Y G++ QDL+Q
Sbjct: 167 KKYMNRGLSFQDLIQ 181
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +RE
Sbjct: 59 KSGKAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRE 118
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 179 SFQDLIQ 185
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%)
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 56 SRRRVQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLD 115
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
P +WAA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 116 REPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
+ RRK + ++ D +R RLL A+EE++L+ I DLL+LE +R L+E+
Sbjct: 56 SGRRKAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQL 115
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
PT A+WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 116 EREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 175
Query: 317 Q 317
Q
Sbjct: 176 Q 176
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 177 SFQDLIQ 183
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 191 SVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 248
+VK+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 56 AVKAGKAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 115
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ L ++ P ++WA A + ++ R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 116 GDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 175
Query: 309 GMNLQDLVQ 317
G++ QDL+Q
Sbjct: 176 GLSFQDLIQ 184
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 69/121 (57%)
Query: 197 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
T+RR+ S ++ D +R RLL A+EE++L+ I DLL+LE + + L +R
Sbjct: 46 TARRRGQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRL 105
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 106 EREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 165
Query: 317 Q 317
Q
Sbjct: 166 Q 166
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 82/140 (58%), Gaps = 17/140 (12%)
Query: 186 AANVM---SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
A NV+ + + STSRR+ S++ YL+ S S LLT +E++L+ IQDL
Sbjct: 234 AGNVVRKTTKRDPSTSRRQTDSMKT--------YLKDIGSVS-LLTGEQEVELAMRIQDL 284
Query: 243 LKLEGLREVLSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 297
+ LEG+RE L E ++ WA AA V +REL+ RL+ G K++MI +N+RL
Sbjct: 285 VYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRL 344
Query: 298 VISIAKNYQGAGMNLQDLVQ 317
V+SIAK Y M+ QDL+Q
Sbjct: 345 VVSIAKRYANKSMSFQDLIQ 364
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 71/125 (56%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST RR+ + ++ D +R RLL A EE++L+ I DLL+LE RE L
Sbjct: 47 KKLSTIRRQETNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKL 106
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ P +WAA+ ++ RRRL G K+KM+ SN+RLV+SIAK Y G++
Sbjct: 107 WQELKRIPNDREWAASVEMELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 166
Query: 313 QDLVQ 317
QDL+Q
Sbjct: 167 QDLIQ 171
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 62/106 (58%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL+LE R L G PT +WA +
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 143 PLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQWAAA 268
+D +R S LL A +E++L+ IQDL+ LE +RE L E G T QWA+A
Sbjct: 14 TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASA 73
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AG++ + L +RL G K++MI +N+RLV+SIAK Y + M+ QDL+Q
Sbjct: 74 AGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQ 122
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE L+E L+E G PT AQWA AA
Sbjct: 9 DPVRAYLREIGRVP-LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ Q+ELR + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 68 MTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLT EE+ S +Q ++ LE L+ L+E PT +WA AA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ Q+EL++R++ G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQ 114
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYL+ LLT +E+ L +Q L+KLE +R+ L+E PT A+WA A +
Sbjct: 13 RYLKGIGRFP-LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPE 71
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L++ + G KDKM+ SN+RLV+SIAK Y+G+ +++ DL+Q
Sbjct: 72 ALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQ 114
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ L ++
Sbjct: 55 STRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQL 114
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P +WA ++ R+RL G K+KM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 115 EREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLI 174
Query: 317 Q 317
Q
Sbjct: 175 Q 175
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 198 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 256
S R+R ++ Y+ D +R RLL A+EE++L+ I +LL+LE + E L +
Sbjct: 58 STRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQL 117
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
P ++WA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 118 DREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 177
Query: 317 Q 317
Q
Sbjct: 178 Q 178
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
IQ+L+KLEG + L +CG PT +WA A G+ REL+ + G C++KM SN RLV
Sbjct: 5 IQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLV 64
Query: 299 ISIAKNYQGAGMNLQDLVQ 317
I +A+ Y+G G+++QDLVQ
Sbjct: 65 IHVARKYEGCGLDIQDLVQ 83
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L E + G P +WAA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 239
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLL +EE++L+ I DLL LE L E + G P +WA+ + + RRRL G
Sbjct: 164 RLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFRRRLMLGR 223
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 224 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 256
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 179 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
T A + AA + S+K G V D +R RLL +EE++L+
Sbjct: 67 TVAKDGKAAKLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARK 117
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
I DLL LE L + E G P +WA + + RRRL G K+KM+ SN+RLV
Sbjct: 118 IADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLV 177
Query: 299 ISIAKNYQGAGMNLQDLVQ 317
+SIAK Y G++ QDL+Q
Sbjct: 178 VSIAKKYMNRGLSFQDLIQ 196
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EKAA + S+K G V D +R RLL +EE++L+ I DL
Sbjct: 173 EKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 223
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
L+LE L G P +WAA + + RRRL G K+KM+ SN+RLV+SIA
Sbjct: 224 LQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 283
Query: 303 KNYQGAGMNLQDLVQ 317
K Y G++ QDL+Q
Sbjct: 284 KKYMNRGLSFQDLIQ 298
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 193 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 251
K+G R+R + ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 47 KAGKAKGRRRATAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDR 106
Query: 252 LSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 306
+SE+ P + WA+ + R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 107 ISEQLDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYM 166
Query: 307 GAGMNLQDLVQ 317
G++ QDL+Q
Sbjct: 167 NRGLSFQDLIQ 177
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 56 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 176 SFQDLIQ 182
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 193 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 250
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 41 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 100
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 310
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 101 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 160
Query: 311 NLQDLVQ 317
+ QDL+Q
Sbjct: 161 SFQDLIQ 167
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G+ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 59 GAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLI 118
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 119 EHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 178
Query: 314 DLVQ 317
DL+Q
Sbjct: 179 DLIQ 182
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 64/107 (59%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ QREL+++L G K KM+ +N+RLV+S+AK Y M+L DL+Q
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
+ +LLT EE QL + IQ+L +LE ++ L + G PT A+WA G+ L+ +L
Sbjct: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+K+I +N+R+V+ +AKNY G G++ QDL+Q
Sbjct: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQ 102
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD +R YLR S LLT +E+QL +Q +++LE +++ L++ CG P+ W AA
Sbjct: 21 SDNVRLYLR-DIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAA 79
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ EL+ L G K KMIT+N+RLV++IAK Y+ + L DL+Q
Sbjct: 80 DLEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQ 127
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P +WAA +
Sbjct: 154 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDM 213
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 214 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 259
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
+A ++RA + +N K SR+ + SV+E + D + Y T + LL NEE+
Sbjct: 114 RAIKSRATKPGNSNGEPPKP--VSRKIKASVRETGF-DSMHYYMKTMGNHELLQKNEEII 170
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR--ELRRRLNYGILCKDKMIT 292
L+ IQ L+ EG R+ L PT+ +WAA+ + +L+R++ + K +
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLVISIAK YQ G+N+QDL Q
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQ 255
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LRE + E G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+RE R + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 179
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 65/106 (61%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 194
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ QR+L+++L G K KM+ +N+RLV+S+AK Y M+L DL+Q
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQ 114
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMS-------VKSGSTSRRKRPSVQEVDYSDPLRY 216
+ V + ++ ERK+RR RA+ + S ++SGS ++P+V +
Sbjct: 204 VVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGS----EKPTVSSGKKA----- 254
Query: 217 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 276
+ + S RL+ A E +++ GI+ L LE +R L E + + WA AAG+D + L
Sbjct: 255 --SKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVL 312
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+++L++G C+D++I S LV+ A+NY+G G+ L+DL+Q
Sbjct: 313 QQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQ 353
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG-GSP---TFAQWAA 267
D +R RLL A+EE++L+ I DLL+LE RE L+ G P + + WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 207
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L R G P +WAA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 255
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 213
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 266
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRSYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 238
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 242
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 64/106 (60%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A EE++L+ I DLL+LE +R+ LS+ P A WAAA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 171
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
A K A + S+K G V D +R RLL +EE++L+ I D
Sbjct: 139 AAKTAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIAD 189
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
LL+LE L G P +WA + + RRRL G K+KM+ SN+RLV+SI
Sbjct: 190 LLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSI 249
Query: 302 AKNYQGAGMNLQDLVQ 317
AK Y G++ QDL+Q
Sbjct: 250 AKKYMNRGLSFQDLIQ 265
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ +LL EE+QL+ I LL+ E ++ L E+ G PT +W+AA +
Sbjct: 84 DSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKI 143
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D ++ + L K++MI +N+RLV+SIAK Y GM+LQDLVQ
Sbjct: 144 SDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQ 190
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 245
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 58/92 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ +Q L+KL L+E L G + QWA AA V EL+R++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQ 154
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA--A 269
D ++Y T + LL NEE+ L+ IQ L+K E +RE L + PT+ +WA A
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ ++++++ + K + SN+RLVISIAK YQG G+N+QDL Q
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQ 108
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 246
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 7/129 (5%)
Query: 195 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
G SRR R V++ Y+ D +R RLL A+EE++L+ I DLL++E +R+ L
Sbjct: 86 GRASRR-RTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLC 144
Query: 254 ERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ G + + WA G+ R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 145 QELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNR 204
Query: 309 GMNLQDLVQ 317
G++ QDL+Q
Sbjct: 205 GLSFQDLIQ 213
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 253
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 235
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE + G P+ +WAA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 220
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 230
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 44/166 (26%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 256 CGGSPTFAQWA----AAAGVDQR------------------------------------- 274
P QW ++QR
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 275 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 209
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 73/168 (43%), Gaps = 46/168 (27%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 256 CGGSPTFAQWA----------------AAAGVDQR------------------------- 274
PT QW +A D +
Sbjct: 104 LDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLES 163
Query: 275 -----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 164 KAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLT EE+ + +Q + LE RE+ ++ G PT QWA AA
Sbjct: 9 DPVRSYLREIGRVP-LLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAAR 67
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +REL + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 68 ISRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y + S +RL EE+ L+ I LL LE + E L E+ SP +WA A + + E
Sbjct: 192 YYKQVNSFARL-HPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWE 250
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L RL G K++M+T+N+RLV S+AK YQ G++ QDL+Q
Sbjct: 251 LCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQ 292
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+ EE+ L+ +Q + L L+E LSE+ PT +W+ A ++ EL ++N G +
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ ++ DL+Q
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQ 126
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 10/198 (5%)
Query: 130 PEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV 189
P+ +QQ + + P EE E++ SQ + VRS + ERK +R RA+EK +
Sbjct: 141 PDSSLLDQQIIEFDPETTPLDEE----EQEDSQVVVVRSGKSEERKLKRVRASEKGSR-- 194
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
+SVK RR + S ++ S + ++ R++ E+ L A I++ LE +R
Sbjct: 195 ISVKV--NPRRPKKSSRKASSSQFISEWKSHPGRRRIIV-REQSALLATIKECASLEKIR 251
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E + + G ++ +WA AAG+D+ EL RL G C+++++ + LV IA++Y G G
Sbjct: 252 EKMVKE-GQEVSYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMG 310
Query: 310 MNLQDLVQLQALRYLNMA 327
L DL+Q + L+ A
Sbjct: 311 TALDDLLQAGKMGVLDGA 328
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
++Q+ D D +R+ RLL +EE+QL+ I LL E ++ L ++ PT +
Sbjct: 107 NIQKAD--DSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNS 164
Query: 264 QWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+W AA V D R+ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+Q
Sbjct: 165 EWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 219
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
R K A + S+K G V D +R RLL +EE++L+ I
Sbjct: 99 RKDAKGAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKI 149
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
DLL+LE G P +WAA + + RRRL G K+KM+ SN+RLV+
Sbjct: 150 ADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVV 209
Query: 300 SIAKNYQGAGMNLQDLVQ 317
SIAK Y G++ QDL+Q
Sbjct: 210 SIAKKYMNRGLSFQDLIQ 227
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 14/125 (11%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG-LREVLSERCGGSPTF 262
S Q+VD YL+ S S LL ANEE+QL+ IQDL+ LE +E++++ G+
Sbjct: 373 SAQQVDSMKV--YLKEIGSVS-LLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPI 429
Query: 263 AQ----------WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
AQ WA G+ + EL RL G K+ MI +N+RLV+SIAK Y M+
Sbjct: 430 AQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSF 489
Query: 313 QDLVQ 317
QDL+Q
Sbjct: 490 QDLIQ 494
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQ 288
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQ 288
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV--DQ 273
YLR +LL EE++LS + L+ LE + E G SPT ++WA G D
Sbjct: 281 YLREI-GRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDV 339
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LR + G K++M+T+N+RLV+SIAK Y G+ LQDL+Q
Sbjct: 340 EKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 383
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
+ LLTA EE L ++ ++K E + E LS G SP+ A+WAAA R R +
Sbjct: 2 TELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACS--PRLFREMMLTA 59
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ N+RLV+SIA+ Y G G+N+QDLVQ
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQ 93
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 192 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 250
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q
Sbjct: 251 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 292
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +QDL+KL+ +R+ L+E+ P A+W+ AA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LLT EE+ + +Q L+ LE LR+ + E G PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++EL+ + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 179 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSA 237
TR A +A + + + R P V D +R YLR LLT +E+ L
Sbjct: 7 TRPAALQSAPALDSRQAPIAVRTLPPVD----GDLVRSYLR-DIGRVPLLTHEQEITLGR 61
Query: 238 GIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
+Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G K++M+ +N+R
Sbjct: 62 QVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLR 121
Query: 297 LVISIAKNYQGAGMNLQDLVQ 317
LV+S+AK Y M L DL+Q
Sbjct: 122 LVVSVAKKYTKRNMELLDLIQ 142
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS ++ D D + + LL A+EE++L+ +Q L++++ L+E LS +
Sbjct: 60 RPSGYRKTDSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQESLSSKLNRRA 119
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T A+ AAA G+ +R+L ++L G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 120 TQAETAAAFGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGA 179
Query: 321 L 321
+
Sbjct: 180 M 180
>gi|168029696|ref|XP_001767361.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens]
gi|162681425|gb|EDQ67852.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
Length = 632
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE +L+ ++ + KLE L++VL ++ G PT +WAAAAGVD +RRRL G
Sbjct: 334 LLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMRRRLALGRA 393
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNL--QDLVQ 317
+ K+I N+RLV+S A Y M+L QDL Q
Sbjct: 394 ARTKLIQRNLRLVLSQAYKYHKDSMSLSIQDLCQ 427
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+Q
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
L+ A E ++S G++ + LE +RE L + G + + WA AA VD ++L+++L +G
Sbjct: 263 LIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSF 322
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYL 324
C+D+++ S LV+ +AK Y+ +G+ ++DLVQ AL L
Sbjct: 323 CRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVL 361
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+ EE+ +Q L++L L E L+E+ PT A+WA AG++ EL + + G
Sbjct: 51 LLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTR 110
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DLVQ
Sbjct: 111 SKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 142
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 11 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 69
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+Q
Sbjct: 70 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 122
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 165 AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
VR+ ++ ERK RR RAA S+ S +VQ + P R ++SSS
Sbjct: 206 VVRTGKKEERKFRRERAASDNGKKTTSLSLPS------KTVQN-NLPKPTFVKRTSSSSS 258
Query: 225 RL-LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
R L A E +++ G++ LE +R L E G + + WA A G+D++ L+++L +G
Sbjct: 259 RRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFG 318
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
C+D++I + LV+ IA+NY+G G+ ++DL+Q
Sbjct: 319 WYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQ 352
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 46/179 (25%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A A+ + + SRR+ P ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AEADGKKTRKITASRRRDPGKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 245 LEGLREVLSERCGGSPTFAQWAA-------------AAGVDQRE---------------- 275
LE +RE L E PT QW A ++E
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEII 152
Query: 276 -----------------LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE LRE L R GG+ P+ + AAAAG+ LR+RL+ G
Sbjct: 60 LLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLHAGR 119
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 120 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 152
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 145 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 204
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 195 DPEPETTPLDAGQED-SQVVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 252
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
++ S + ++ R++ E+ L + I++ LE +RE + + G ++ +
Sbjct: 253 -RKASSSQFISEWKSHPGQRRIIV-REQSALLSTIKECAGLEKIREKMVKE-GQEVSYHR 309
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYL 324
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G L DL+Q + L
Sbjct: 310 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVL 369
Query: 325 NMA 327
+ A
Sbjct: 370 DGA 372
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 145 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 204
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 195 DPEPETTPLDAGQED-SQMVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 252
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
++ S + ++ R++ E+ L + I++ LE +RE + + G ++ +
Sbjct: 253 -RKASSSQFISEWKSHPGQRRIIV-REQSALLSTIKECAGLEKIREKMVKE-GQEVSYHR 309
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYL 324
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G L DL+Q + L
Sbjct: 310 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVL 369
Query: 325 NMA 327
+ A
Sbjct: 370 DGA 372
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 207 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 264
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 5 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 63
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+Q
Sbjct: 64 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQ 116
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+Q
Sbjct: 190 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|414878913|tpg|DAA56044.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878914|tpg|DAA56045.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
gi|414878915|tpg|DAA56046.1| TPA: hypothetical protein ZEAMMB73_174714 [Zea mays]
Length = 287
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q+ A
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQVMA 287
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 37 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 95
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q
Sbjct: 96 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 137
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 64/139 (46%), Gaps = 37/139 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT---------- 261
D +R RLL A+EE++L+ I DLL LE LR R G + T
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRA----RMGAAGTDMHSDVADLL 116
Query: 262 -----------------------FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 298
+WA AAG+ + R R+ YG KDKM+ SN+RLV
Sbjct: 117 GDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLV 176
Query: 299 ISIAKNYQGAGMNLQDLVQ 317
+SIAK Y G++ QDL+Q
Sbjct: 177 VSIAKKYMNRGLSFQDLIQ 195
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 164 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE--VDYSDPLRYLRATT 221
+ V+S ++ E K RR R A + S+ + QE + +S L T
Sbjct: 197 VVVQSSKKKENKTRRKREFVSTAVSSQSLTLKAN--------QEDLLGFSASLVKRAPNT 248
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
+ R+L A E ++S G++ L +LE +R + E + + WA A+GVD++ L++ L+
Sbjct: 249 KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLH 308
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G C+D++I S LV+ +A+ Y+G G+ L DL+Q
Sbjct: 309 RGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQ 344
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+Q
Sbjct: 190 SDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 236
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 145 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPS 204
D EP L +E SQ + VRS + ERK RR RA+ + SVK R K+
Sbjct: 192 DPEPETTPLDAGQED-SQVVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKS- 249
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
++ S + ++ R++ E+ L + I++ LE +RE + + G ++ +
Sbjct: 250 -RKASSSQFISEWKSHPGQRRIIV-REQSALLSTIKECAGLEKIREKMVKE-GQEVSYHR 306
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYL 324
WA AAGVD+ EL RL G C+D+++ + LV IA+ Y G G L DL+Q + L
Sbjct: 307 WAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVL 366
Query: 325 NMA 327
+ A
Sbjct: 367 DGA 369
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ IQ L ++E LR E G P A+ A A G+ +R+L +RL+ +
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 133 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 192
Query: 272 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+Q
Sbjct: 193 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQ 239
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P ++WA+AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + EL R + G K+KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 KITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 212 DPLR-----YLR--ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
DPLR +++ + T + R + A E+++S G++ L +LE +R + E + +
Sbjct: 235 DPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSS 294
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQL 318
WA +GVD++ L+++L +G C+D++I S LV+ A+ Y+G G+ L+DL+Q+
Sbjct: 295 WAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQV 348
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 208 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 266
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 267 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 308
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 307
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 57/86 (66%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
S LV+ +A+NY+G G+ +DL+Q
Sbjct: 338 KSTRSLVLFLARNYRGMGIAHEDLIQ 363
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+KL+ +R+ L+E+ P A+W+AAA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 57/86 (66%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
S LV+ +A+NY+G G+ +DL+Q
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQ 363
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA+A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV--DQRELRRRLNYG 283
LL EE++LS + L+ LE ++ E+ G SPT +WA G D LR+ + G
Sbjct: 420 LLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDG 479
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+T+N+RLV+SIAK Y G+ LQDL+Q
Sbjct: 480 RSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQ 513
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P +WA AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + ELRR + G K+KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 KISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ +Q L++ E R+ L E PT A+W A G + Q++ RL+ G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 162
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R + G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDREIEQGQ 83
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQ 116
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q +K+E ++E L ++ G PT +QWA AA + ELR + G
Sbjct: 23 LLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 99 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 158
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 159 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 190
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 76 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 134
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 135 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 176
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER--CG-GSPTFAQWAAA 268
D +R RLL A+EE++L+ I DLL+LE + L+E+ C WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + + RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 108 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 166
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 167 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 208
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D D + L S LL EE++L+ IQ+L+ E L E L+ G +PT ++ A A
Sbjct: 67 DIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVA 126
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
AG + +L RL+ K +MI+SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 127 AGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 179
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 60 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 118
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 119 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 160
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ +Q L++++ + E L + G PT A+ A A + +R+ RL G +
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 171
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 149 YLRGTVSKE-LLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 207
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q
Sbjct: 208 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 249
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQ 273
RYL+ S LL A +E++L+ I+ KLE ++E + + G PT +WA AA + D
Sbjct: 116 RYLQEIGEIS-LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDA 174
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNY--QGAGMNLQDLVQ 317
ELR + G L +D+++ +N+R V+++AK Y Q M++QDL+Q
Sbjct: 175 EELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQ 220
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 30 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 88
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 89 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQ 130
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++E + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ +RE LS+R G P +WA AA + + EL+ +N G L
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL A+EE++L+ I DL +LE R L G PT +WA G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 182
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 284
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 31/182 (17%)
Query: 137 QQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGS 196
++P N DLE + ++ S+ IA K A+ + S +
Sbjct: 24 EEPQNLKGDLESSKKD-------SSEKIA------------------KLASKLASTPRRT 58
Query: 197 TSR-RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
R RK+P + D +R RLL A EE++L+ I DLL+LE +RE + +
Sbjct: 59 AERGRKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDE 113
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ A+W ++ R RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 114 LDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 173
Query: 316 VQ 317
+Q
Sbjct: 174 IQ 175
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++E + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +QDL+ +E ++ L R G P+ + A A+G+ +L+R+L +G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA+EE L IQ ++K E + E LS + PT +WAAA G + +
Sbjct: 11 LLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTSRE 70
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ SN+RLV+SIA+ Y G++LQDLVQ
Sbjct: 71 AKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQ 102
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L + G P+ Q A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + IQ+L+ LE +E L+++ PT +WA AA + ++ L+ ++ G
Sbjct: 23 LLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+SIAK Y ++L DL+Q
Sbjct: 83 AKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQ 114
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 86 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 144
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q
Sbjct: 145 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQ 186
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q + L +++ L E+ G PT++QWA A + +EL+ L G
Sbjct: 23 LLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEA 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L L ++E L+E+ G PT +W+ AAG+ EL++ + G
Sbjct: 23 LLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 294
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQ 294
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 58/92 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L+ IQ+L+ LE RE L ++ P+ +WA AA + ++ L +++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+SIAK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQ 114
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 57/99 (57%)
Query: 219 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 278
A ++LLT EE +L IQ L+ G R+ L+ G +PTF++WA + + EL
Sbjct: 15 AELCQAKLLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEE 74
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L G K M+ +N+R+VISIA+ YQ G+ L DL+Q
Sbjct: 75 SLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQ 113
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 46/168 (27%)
Query: 196 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 255
S SRR+ S ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 48 SASRRRDTSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 107
Query: 256 CGGSPTFAQWAAAAG------------------------------------------VDQ 273
P QWA ++Q
Sbjct: 108 LDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQEKKTISNLEKIWELEQ 167
Query: 274 R----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 168 KSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQ 215
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L G P+ A AG+ REL +RL G+
Sbjct: 33 LLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+++N+RLV+S+AK Y M L DL+Q
Sbjct: 93 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 124
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 55/83 (66%)
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
+S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++ S
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
LV+ +A+NY+G G+ +DL+Q
Sbjct: 61 RSLVLFLARNYRGLGIAHEDLIQ 83
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +E R+ L+ G SPT + AA + +EL R+L+ G L
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +MI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 240 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 299
Q+ +K+E L +SE+ G PTF +WA A ++ +ELRR+L + C+ M++SN+ LVI
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 300 SIAKNYQGAGMNLQDLVQ 317
+A+ + G ++DL+Q
Sbjct: 61 KVARKFGLKGTTIEDLIQ 78
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 57/89 (64%)
Query: 229 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 288
+ E ++S G++ + +E +R L E G + + WA AAG++++ L R L+YG C+D
Sbjct: 272 SKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRD 331
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+++ S LV+ +A+NY+G G+ +DL+Q
Sbjct: 332 ELLKSTRSLVLFLARNYRGLGIAHEDLIQ 360
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+ EE+ L+ +Q + L ++E LS++ PT +W+ A ++ EL +++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ ++ DL+Q
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQ 135
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 130
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ M DL+Q
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQ 128
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 126
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR + S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 219 YLRGSVSKE-LLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 277
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ L ++ + SN+RLVISIA+ Y G+ L DL+Q
Sbjct: 278 LRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQ 319
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 18 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 77
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 78 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 110
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ +RE L ER PT +WA AAGV + +L + + G L
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 57/106 (53%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G PT +WAA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RRRL K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 233
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 92/166 (55%), Gaps = 12/166 (7%)
Query: 163 SIAVRSRRQT-ERKARRTR----AAEKAAANVMSVKSGSTSRRKR----PSVQEVDYSDP 213
S A R++R+T +R + +T+ AE +A + S + SRR R + +D
Sbjct: 212 STAPRAKRKTVKRVSTKTQLTGIVAEPGSAQEANEASAAESRRNRRIARKNADTKKQTDS 271
Query: 214 LR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGV 271
++ YL+ + S LLT EE++L+ IQDL+ L + E L E GG PT WA +
Sbjct: 272 MKTYLKDIGTVS-LLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNI 330
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++EL RRL G K+ MI +N+RLV+SIAK Y M+ QDL+Q
Sbjct: 331 TEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQ 376
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 66/110 (60%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ L + LLTA EE++L+ +Q+L+ L+ L + L + PT A+ AAA G+
Sbjct: 45 DPVGALFKEMARYPLLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGI 104
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
+ +L++ + K KMI+SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 105 SETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 154
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMIT+N+RLV+SIAK YQ + L DL+Q
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQ 125
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMIT+N+RLV+SIAK YQ + L DL+Q
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQ 125
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L+ ++E L + G PT +WA AA + EL +N G +
Sbjct: 23 LLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINAGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L++R G P+ +WA ++++ L++ L G
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 61/96 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ I+ L ++E LR L++ G P+ A+ A A G+ +R+L +L+ +
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGAL 204
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 251
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 179 TRAAEKAAANVMSVKSGST-SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
T A + AA KSG T + RPS +VD YLR LL+ +E+ L
Sbjct: 14 TVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGR 70
Query: 238 GIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
+Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G K++M+ +N+R
Sbjct: 71 QVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLR 130
Query: 297 LVISIAKNYQGAGMNLQDLVQ 317
LV+S+AK Y M L DL+Q
Sbjct: 131 LVVSVAKKYTKRNMELLDLIQ 151
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ L + LLTA EE++L+ +Q+L+ L+ + + L + PT A+ AAA G+
Sbjct: 45 DPVGALFKEMARYPLLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGI 104
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
+ +L++ + K KMI+SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 105 SETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 154
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L+ ++ L E G +W+ AAG+ + EL +L +G
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+++AK YQ + DL+Q
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQ 123
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
K ST R RP V D +R LLT EE+ +Q ++K ++ L
Sbjct: 9 KDQSTKRNTRPGVS----VDTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKL 64
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+++ P+ +WA + + EL R L+ G K KMI +N+RLV+SIAK YQ M
Sbjct: 65 TKKLEHEPSKTEWANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEF 124
Query: 313 QDLVQ 317
DL+Q
Sbjct: 125 LDLIQ 129
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 58/106 (54%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 274
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L R+ L++ G TF +WAAA + EL L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DLVQ
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQ 105
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ L ++ LS G P F+QWA A ++++EL++ + L
Sbjct: 23 LLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIATAEL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L+G+ E L + PT +WA AA + + EL R L G
Sbjct: 31 LLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQGRQ 90
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ + DL+Q
Sbjct: 91 AKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 122
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 59/96 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL ANEE++L+ I+ L+ + L E L+ G P ++ A A G+ + EL + GI+
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI+SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 128
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 140
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ ++ ++ + LRE L E G P++A WA G+D L+ ++ G
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK Y ++L DLVQ
Sbjct: 82 AKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQ 113
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 156 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 214
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 525 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 579
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 580 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 632
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLNMA 327
LR RL G C+++++ + LV IAK Y G G +DL+Q + LN A
Sbjct: 633 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGA 685
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL LE L + G P +WA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLNMAH 328
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q +L + A
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 275
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ L+ +Q L++++ L+E L G P A+ A + +R+L RL G +
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 174
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
RPS +VD YLR LL+ +E+ L +Q+L++LE + L E+ GG
Sbjct: 38 RPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAV 94
Query: 262 FA-QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A + A AAG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 95 LAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 151
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ +E L++R G P++A+WA AGV +EL++ L G
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQT 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
S Q+ Y D + + LL +EE++L+ ++ E R+ L+E+ G PT
Sbjct: 56 SSQKSKYEDTVGAFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQ 115
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
Q A A + +EL R+L G + K +MI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 116 QLAEALEMGVKELDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 169
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L++L L E L+ G PT A+ A A + +L L G
Sbjct: 30 LLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRKGQR 89
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DL+Q
Sbjct: 90 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 121
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+D +R YLR LLT +E+ +Q L+ L ++ L E G P+ +WA AA
Sbjct: 8 TDTVRTYLREIGRVP-LLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAA 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D+ +L++ ++ G K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 NIDELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 114
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 156 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 214
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 442 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 496
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 497 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 549
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLNMA 327
LR RL G C+++++ + LV IAK Y G G +DL+Q + LN A
Sbjct: 550 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGA 602
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL A EE++L+ +Q LL++E ++ L E +P+ A+ A A G + ++ RL+ G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 167
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 192
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++S G++ + +E +R L E G + + WA AAG++Q+ L L++G C+D+++
Sbjct: 274 EAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELV 333
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
S LV+ +A+NY+G G+ +DL+Q
Sbjct: 334 KSTRSLVLFLARNYRGLGIAHEDLIQ 359
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q+L+ LE L L + G P+ A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+E+ PT ++WAA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITLGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL LR L + G PT A+W A A + +L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 158
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE+ L+ +Q +L++E + E L + P+ A+ A + G+++++L RL +
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGAL 170
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA---QWAAA 268
D +R RLL A+EE++L+ I DLL+LE RE L+ P +WA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ E R+RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 156 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 214
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 200 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 254
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 255 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 307
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLNMA 327
LR RL G C+++++ + LV IAK Y G G +DL+Q + LN A
Sbjct: 308 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGA 360
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+QL+ ++ L E R L+E G SP+ +WAA + REL +L G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 166
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 278
LL +EE+ L+ +QD +KL +R L + G PT A+WAA A + +L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 156
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 265
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 199
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE+ L+ ++ L++++ L L E+ PT A+ AAA + +R+L L G +
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGAL 170
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 191
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+ L+ ++ +++ E +R+ L E+ +P+ +WA A G+ REL + L G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 203 PSVQEVDYS--DP------------------------LRYLRATTSSSRLLTANEEMQLS 236
PS++E+DYS DP LR+ +LT EE+ LS
Sbjct: 289 PSIRELDYSEDDPSDNEPLAWETYPETPRARSSESSTLRWYLRMIGRVDMLTPEEEVSLS 348
Query: 237 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 296
I LL E R L +PT + A GVD RR L KD+M+ +N+R
Sbjct: 349 RQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARRAKDRMVAANLR 408
Query: 297 LVISIAKNYQGAGMNLQDLVQLQALRYLNMA 327
LV+SIAK Y G+ L+DL+Q +L + A
Sbjct: 409 LVVSIAKRYMRKGLPLEDLIQEGSLGLIRAA 439
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q L++LE + L E+ + A+WA AA V +LR+ ++ G +
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 156 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSDPL 214
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ +
Sbjct: 200 LEEQ-NVVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKN-- 254
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R E+ L I++ LE +RE L + G + A WA AAG+D+
Sbjct: 255 ------YPGRRRSIVREQSALLVTIKECANLEKIRENLLKD-GSEVSHASWAKAAGIDEA 307
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYLNMA 327
LR RL G C+++++ + LV IAK Y G G +DL+Q + LN A
Sbjct: 308 LLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGA 360
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL A+EE++L+ ++ L ++ ++ L E+ G P
Sbjct: 54 RPSGYNKTEHDDAVGAFFKEMARYPLLKADEEVELARRVRFLEEVREIQAALQEQLGQQP 113
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
T Q AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 114 TKVQVAAQLDLTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 170
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 61/96 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L++L L++ L + G S T + AAA + +++L+ R+ G +
Sbjct: 74 LLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQV 133
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DLVQ AL
Sbjct: 134 AKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGAL 169
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAAA+ ++ EL + + G +
Sbjct: 23 LLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAVGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 21/189 (11%)
Query: 156 LEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV-DYSD-P 213
LEEQ + + VRS + ERK +R +A+EK + +SVK+ S +K S Q + ++ + P
Sbjct: 631 LEEQ-NDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYP 687
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQ---------------DLLKLEGLREVLSERCGG 258
R S LL + AG+Q + LE +RE L + G
Sbjct: 688 GRRRSIVREQSALLVTIKRRSADAGVQWKASAAEERRRASAAECANLEKIRENLLKD-GS 746
Query: 259 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQL 318
+ A WA AAG+D+ LR RL G C+++++ + LV IAK Y G G +DL+Q
Sbjct: 747 EVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQA 806
Query: 319 QALRYLNMA 327
+ LN A
Sbjct: 807 GKMGVLNGA 815
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 188
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 265
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 198
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL +EE+QL+ ++ L E R L E+ G SPT +WA+ G++ ++L L G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 158
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 189
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ +E LSE+ PT +WA A G++ L L G
Sbjct: 38 LLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DLVQ
Sbjct: 98 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 129
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL +EE++L+ ++ L ++ L+E L G P
Sbjct: 65 RPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELAKRVRFLEDVKDLQEALELELGQQP 124
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T AQ A + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 125 TKAQIADKFEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 184
Query: 321 L 321
+
Sbjct: 185 M 185
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L L ++ GG +WA AAG+ +L+R+L G
Sbjct: 22 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGR 81
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 82 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 114
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q + L L+ + E G P+ +WA AA +D L ++L+ G
Sbjct: 32 LLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +MI +N+RLV++IAK YQ + DL+Q
Sbjct: 92 AKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 250
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 251 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 257
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 258 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 292
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQ 211
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD S LL+A EE++LS I+DL++LE +++ L+ R G P +WA AAG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 271 VDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA-GMNLQDLVQ 317
+ R+ G + +++ SN+R V+SIAK Y M LQDL+Q
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQ 210
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G PT +WAA+A V+ EL + G +
Sbjct: 37 LLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAEGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQ 128
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L+ E R L E PT A+WA A + ++R+L RL G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 168
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT +E+ +Q ++KL +E L+++ G + +W G+ + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETE 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
L++ + G K KMI +N+RLV++IAK YQ M DL+Q AL
Sbjct: 82 LKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGAL 127
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L LE RE L+E +PT A+WAAA + + +L + G
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 113
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L++LE + L E+ GG A + A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 128
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P+ +WA + E+ + + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ ++E LS + PT +WAA+AG++ EL + + G +
Sbjct: 23 LLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIALGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 55/86 (63%)
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
E ++SAG + + +E +R L E G + + WA AAG+++ L R L+YG C+D+++
Sbjct: 269 EAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMNEILLMRNLHYGWYCRDELL 328
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
S LV+ +++NY+G G+ +DL+Q
Sbjct: 329 KSTRSLVLFLSRNYRGLGIAHEDLIQ 354
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R T + LL NEE+ L +Q L++ E RE L PT+ +WA
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 272 DQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D +L++++ + K + SNIRLV+SIAK YQ G++ QDL Q
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQ 108
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L + + L E+ G P+ A+ AA + +R+L RL G +
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q A+
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAM 184
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD +R YLR LLT +E+ +Q L L ++ L+ R G +P+F +WA A+
Sbjct: 8 SDLVRTYLREIGRVP-LLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQAS 66
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL++ + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 67 QLSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQ 114
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL EE++L+ ++ +++ E +R+ L E+ PT +W A ++ R+L RL G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 161
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGIL 285
L+ EE+ + IQ L E R+ +SE G +PT A+WA A G D E R++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KDK+I SN+RLV IA+ Y G++LQDL+Q
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYGLSLQDLMQ 310
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +EVL+++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L LE +E L E+ G PT +WA A+ + + EL+ + G
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQT 94
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 95 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 126
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
++PL T +LL +EE+ L IQ L+LE +R+ L G +P+ +WA+
Sbjct: 225 ANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLH 284
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + EL R L K+ MI++N+RLV+S+A+ Y+G G+ DL+Q
Sbjct: 285 LTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQ 331
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + +Y D + + LL +EE++L+ ++ L ++ ++ L + G P
Sbjct: 66 RPSGYNKTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQP 125
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T A AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 126 TKASIAAHLQITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 185
Query: 321 L 321
+
Sbjct: 186 M 186
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G+
Sbjct: 32 LLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQKGVQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQG + DL+Q
Sbjct: 92 AKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQ 123
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q+L++L RE L ER TF++WA A + ++ELRR + G
Sbjct: 32 LLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKLSEKELRRAVAVGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ + DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%)
Query: 206 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
++V+ D +R LL+ +E+ +Q ++ L +E L+E PT +W
Sbjct: 12 KKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEW 71
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A AA EL++ ++ G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 72 AQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L ++ L+E PT +WA +++ L++ +N G
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTR 116
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 117 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R LL+ EE+ + ++ L++L ++E L+E+ P+ + WA A
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +L+ L+ G + + KMI +N+RLV++IAK YQ + DL+Q
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQ 126
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 59/93 (63%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
R + A E ++S GI+ + +LE ++ L + G + + WA AAG+D++ L+ L++G
Sbjct: 250 RAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGW 309
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
C+D+++ S LV+ +++ Y+G G+ +DL+Q
Sbjct: 310 YCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQ 342
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L L++ + + G P+ +WA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQGQQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DL+Q
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ +Q + L+ L++ L E PT A+WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KM+ SN+RLV+SIAK Y A + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L++ G P+ +WA ++++ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A+EE++L+ ++ L +E L + + E +PT + A A + + + RL Y
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 188
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 55 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQIGRR 114
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+++N+RLV+S+AK Y M L DL+Q
Sbjct: 115 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 146
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 161 SQSIAVRSRRQTERKARRTRAAEKAAANVMSV------KSGSTSRR-KRPSVQEVDYSDP 213
S S + R+RR R+ R A + + + +++ + G RR K VQ DY
Sbjct: 302 SGSPSARTRRLESRQRRVAIAGKPTSPDALTIHPLKKYQKGERVRRVKFDGVQ--DYLTT 359
Query: 214 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 273
YLR T + LLT EE+ LS ++ L L R+ L+ G P+ +WA +
Sbjct: 360 --YLREITKIN-LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSV 416
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R+L +DKM+ +N+RLV+S+AK Y G+ + DL+Q
Sbjct: 417 GDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQ 460
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L ++E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L +++L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L++ E R+ L PT +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQ 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+R L G K KMI +N+RLV++IAK YQ + DL+Q
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 123
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT +EE+ +Q ++ L ++ L++ P+ +WAA + ++E
Sbjct: 23 YLREIGRVP-LLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKE 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + + G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 82 VTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 194 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 47 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 106
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ G PT AQ AA + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 107 QLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 166
Query: 313 QDLVQLQAL 321
DL+Q A+
Sbjct: 167 LDLIQEGAM 175
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+++N+RLV+S+AK Y M L DL+Q
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ ++ ++++E E SE PT A+ A A G + +LR++L
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K +MI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 264
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q +++L +E L++ PT +WA + + EL+R ++ G
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE++L+ ++ +++ E +++ L P A+ A G+ +R+L RL G +
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 177
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL EE++L+ ++ L++ E R+ L + P+ +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 165
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q L++L RE L+ SPT +WA A + +L + G
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DL+Q
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ ++ L L+ ++E L ++ G PTF++WA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + +L+ + G K KM+ +N+RLV+++AK Y + L DL+Q
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQ 114
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L+ L++ L E+ P ++WA A + +L++ L G
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KM+ SN+RLV+SIAK Y A + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQ 114
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L G + L++ PT +WA+ + EL++ ++ G
Sbjct: 38 LLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQGTR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 98 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 129
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++ L L++ + G P+ +WAA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQGQQ 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DL+Q
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQ 123
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL +EE++L+ ++ L +++ L+ L E G P
Sbjct: 66 RPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVKDLQAALEEELGQQP 125
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
+ ++ AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 126 SRSEVAAKFEMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 185
Query: 321 L 321
+
Sbjct: 186 M 186
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 194 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 59 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 118
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+ G PT AQ A + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 119 QLQIGQHPTKAQVAGQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 178
Query: 313 QDLVQLQAL 321
DL+Q A+
Sbjct: 179 LDLIQEGAM 187
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA +G+D +EL++RL G +D+MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 112 YTLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +RE L+ PT A+WAAAA + + EL + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 111
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 274
YLR LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+
Sbjct: 4 YLRDIGRVP-LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSAL 62
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 63 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 105
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ + +E LSE+ PT +WA +++ L ++L+ G +
Sbjct: 37 LLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQGQI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI +N+RLV+SIAK YQ + DL+Q AL
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGAL 132
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + +L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 190 MSVKSGSTSRRKRPSV---QEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 245
M+V++ TS RK V + +D +R YLR LL+ ++E+ L +Q+L+ L
Sbjct: 1 MAVQAEITSSRKIIPVTLEKSTSDNDLIRSYLR-DIGRVPLLSNDQEITLGRHVQELMAL 59
Query: 246 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 305
E L + G P + A+AAG+ L+++ G K++M+ +N+RLV+SIAK Y
Sbjct: 60 ENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRLGERAKERMVAANLRLVVSIAKKY 119
Query: 306 QGAGMNLQDLVQ 317
M L DL+Q
Sbjct: 120 TKRNMELLDLIQ 131
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 130
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR T + LL +EE+ L IQ + E R+ L G P+ +WA A G+D+ E
Sbjct: 54 YLR-TVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREE 112
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L + L+ K M+ +N+RLV+S+AK Y+ ++ QDL+Q
Sbjct: 113 LVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQ 154
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT+++E+ +Q ++ +EG ++ LS++ P A+ A + E
Sbjct: 12 YLREIGQFP-LLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNKSETE 70
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + L G K KM+T+N+RLV+SIAK YQ + L DL+Q
Sbjct: 71 VTQILQLGQRAKQKMVTANLRLVVSIAKKYQRRNLELLDLIQ 112
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL +EE++L+ ++ L +++ L+ L E+ G S
Sbjct: 73 RPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSA 132
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T + A +++++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 133 TKGEIANKFDLNEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 192
Query: 321 L 321
+
Sbjct: 193 M 193
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+ + G P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 182 AEKAAANVMSVKS------GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 235
A K A +M G+ R+R S +S YL RL + EE ++
Sbjct: 225 AAKTVARIMDYSDSYWSDHGNKKNRRRRSTNSDSFST---YLTEIGKVHRL-SLEEEKEI 280
Query: 236 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 295
I LE +RE L R G P +WA + ELR +L G K++M+ +N+
Sbjct: 281 CQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRAKNRMVAANL 340
Query: 296 RLVISIAKNYQGAGMNLQDLVQ 317
RLVI AK ++ G+ QDLVQ
Sbjct: 341 RLVICFAKRFRNRGVAFQDLVQ 362
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 284
LLTA EE+ L+ ++ L E ++ L + +P+ + A A G++ +R+L RL G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 156
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 203 PSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
P Q+ +S D +R LLT +E+ +Q ++ L ++ L+ G P
Sbjct: 8 PKTQKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPN 67
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA + + EL R + G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 68 LTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE+ +Q L L+ + L+E G PT +WA A + + EL+R + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L +E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ L +Q L+ L + L + PT +WAAA G+ + EL + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 94
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP-TFAQWAAAAGVDQRELRRRLNYGI 284
LLT EE+ + IQ ++ L +++ L+E G P + ++WA AA + REL + + G
Sbjct: 22 LLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGE 81
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 82 RAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQR 274
YLR LL+ +E+ L +Q+L+ LE L E+ GG A+ A AAG+
Sbjct: 16 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAV 74
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 75 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+++N+RLV+S+AK Y M L DL+Q
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L+ +RE L+ + PT +WA AA +D EL + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 6/134 (4%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
A +V+ SG+ SRR++ ++ D + + LL+A EE+ L+ ++ L
Sbjct: 28 AHFSVIEDDSGTKSRRQKTKIE-----DSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSD 82
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGILCKDKMITSNIRLVISIAK 303
E ++ L + +P+ + A A G++ +R+L RL G K KMI SN+RLV+SIAK
Sbjct: 83 CEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAK 142
Query: 304 NYQGAGMNLQDLVQ 317
Y G+ DL+Q
Sbjct: 143 RYLNRGVPFLDLIQ 156
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + ++++ +L+ E++++ QD L LE ++ + PT + AAA G
Sbjct: 399 NDGTDHFLHSSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVG 458
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+D R + G+ K+ ++ SN RLV+++ K Y G GM+LQDLV
Sbjct: 459 MDVMAYNMRYDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLV 504
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 209 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+++DP+R YLR LLT EE+ + +Q L+ LE L+E L ++ G PT ++WAA
Sbjct: 6 NFTDPVRAYLREIGRVP-LLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAA 64
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA + + ELR + G K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 65 AAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQ 114
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+++N+RLV+S+AK Y M L DL+Q
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQ 116
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 196 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
+T+ +RP V D +R YLR LL+ +E+ L +Q+L++LE
Sbjct: 3 TTAVDQRPPVD----GDLVRSYLRDIGRVP-LLSHEQEITLGRQVQELVRLEEAEAEFKM 57
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
R G P+ + A++ G+ LRRRL G K++M+ +N+RLV+S+AK Y M L D
Sbjct: 58 RQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLD 117
Query: 315 LVQ 317
L+Q
Sbjct: 118 LIQ 120
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L ++E L+ L++ G P A A A + + ++R+ L G
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K +MI SN+RLV+SIAK Y G+ DL+Q AL
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAL 189
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L L ++ GG + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 123 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 182
+++ + + E +++ + + + P EE S + VRS + ERK +R R+
Sbjct: 602 AIVTQTSHESDFALPGSVAEFDPVTPLGEE--------SDRLIVRSGKSQERKLKRIRSL 653
Query: 183 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 242
EK + + VK+ S ++K + + R E+ L I++
Sbjct: 654 EKVSG--VCVKASSRKQKKSCKSSSSQFIAEWK----NYPGRRRSIVREQSALLMTIKEC 707
Query: 243 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 302
LE +RE + + G ++ +WA AAGVD+ L+ RL G C+++++ + LV IA
Sbjct: 708 ANLEKIRENMVKE-GQEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERLLVTTEWLVKYIA 766
Query: 303 KNYQGAGMNLQDLVQLQALRYLNMA 327
+ Y G G +DL+Q + LN A
Sbjct: 767 RTYTGMGTAFEDLLQAGKMGVLNGA 791
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT+++E+ +Q ++ +E ++ LS++ PT A+ A + E+ + L G
Sbjct: 14 LLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSETEVNQILQQGQR 73
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMIT+N+RLV+S+AK YQ + DLVQ
Sbjct: 74 AKQKMITANLRLVVSVAKKYQHRNLEFLDLVQ 105
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R YLR LL EE+ L+ +Q+ E+L +R G T WA
Sbjct: 19 SDPIRLYLREIGRVD-LLRQEEEILLARLVQER------EELLRQRGDGELT--AWAGRC 69
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GV +LR+ L+ G K++M+ +N+RLV+++AK YQ G++L DL+Q
Sbjct: 70 GVPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQ 117
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L+ EE + I L +LE +RE L + G P +WA A + ELR +L G
Sbjct: 356 LSLVEEKVICEEIARLTRLEAVREDLRRKMGRLPRENEWAWEANLSVSELRGKLIKGRRA 415
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLVI AK Y+ G+ QDLVQ
Sbjct: 416 KNRMVAANLRLVICFAKRYRNRGVAFQDLVQ 446
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L L+E L + G PT +W+ AA +D+ L + G +
Sbjct: 23 LLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 194 SGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 253
+ + + RP++ ++D +R LLT +E+ +Q ++ L +E ++
Sbjct: 4 ANTVENKNRPTL----HTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIA 59
Query: 254 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 313
E G P+ +WA + + +L + L G K KMI +N+RLV+SIAK YQ +
Sbjct: 60 ETLGREPSQQEWAEGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFL 119
Query: 314 DLVQ 317
DL+Q
Sbjct: 120 DLIQ 123
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LL+ +EE+ L+ +Q L+ L R L G P+ +WA A G + LR R+ +
Sbjct: 17 LLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMK 76
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
C++++I N+RLV+S+AK Y G+ DL Q
Sbjct: 77 ACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQ 109
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L+ +RE L+ + G PT +WA + +D +L + G +
Sbjct: 37 LLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
+V D + L + + LL+++EE L+ +Q L EG+R L+ G PT
Sbjct: 126 AVSYKDRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTEL 185
Query: 264 QWAAAAGV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+W AAA + + + + K MI +N+RLV+SI+K YQ G++ QD++Q
Sbjct: 186 EWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQ 244
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L ++ P+ +WAA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT +E+ +Q ++ L +E L+++ PT +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAE 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++ G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 82 LNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WAA + ++++ + G
Sbjct: 32 LLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE+L+ + G PT +WA A ++ EL + + +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ + +Q ++ + +E L+E+ PT +WA + + L ++L+ G +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI +N+RLV+SIAK YQ + DL+Q AL
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGAL 132
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL A+EE++L+ ++ L ++ L+ L+ + G P
Sbjct: 55 RPSGYNKTEHDDAVGAFFKEMARYPLLKADEEVELARRVRFLEEIRELQAALNLKLGQEP 114
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T + A+ + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 115 TKLEIASELEMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 174
Query: 321 L 321
+
Sbjct: 175 M 175
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ----------------------REL 276
IQ LL+LE L++ + PT +WA AAG+ Q +EL
Sbjct: 55 IQRLLELEQLQQREANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKEL 114
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RL G +D+MI +N+RLV+++AK YQ G+ L DLVQ
Sbjct: 115 QKRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQ 155
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L E+ G S + ++ A+ +++++L RL G +
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q A+
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAM 196
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
+Y D + + LL +EE++L+ ++ L ++ + E+ G P A A
Sbjct: 63 EYDDAVGAFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKE 122
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
G+ Q++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A+
Sbjct: 123 MGIVQKQLEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAM 175
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+ L + G P+ Q A+ + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q A+
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAM 186
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L +RE L+ + G P +WAAA ++ L + G +
Sbjct: 54 LLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIADGEI 113
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 114 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 145
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%)
Query: 206 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 265
Q+ + D + + LL A+EE++L+ ++ L+++E + L ++ P +
Sbjct: 82 QKTQFDDAVGAFFKEMARYPLLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREEL 141
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A G+ ++L +L G + K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 142 IAELGISDKQLEHQLYLGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQ 193
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I L++ +E L+ G P+ +WA+ AGVD
Sbjct: 115 RYLRL-----RVVLANAAKQGDEIIAPYLRIIEAQERLASELGHRPSMERWASTAGVDVF 169
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL++ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 ELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 313 QDLVQ 317
DLVQ
Sbjct: 230 LDLVQ 234
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%)
Query: 209 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 268
D +D +R LLT +E+ +Q ++ +E L ++ PT +WA A
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G +L+ + G K KMI +N+RLV++IAK YQ + DL+Q
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQ 130
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIADGEI 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ L +E L+ + PT +W + ++ L ++L+ G
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ ++ DL+Q
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQ 128
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 268
SDP+ + AT LLT EE++L +Q ++ L +G RE G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLTEDGSREFED----GELTTAQ---- 67
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 108
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +EVL+++ P ++WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETEVQQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE+ +Q ++ L ++E ++ PT +WA A G++ L + G
Sbjct: 41 LLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTR 100
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+S+AK YQ + L DLVQ
Sbjct: 101 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQ 132
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L + G + +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 268
SDP+ + AT LLT EE++L +Q ++ +G RE+ G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMAFTEDGSREIED----GELTTAQ---- 67
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 108
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RL++S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQ 128
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL EE+ +Q + L+ L++ L PT +WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KM+ SN+RLV+SIAK Y A + DL+Q
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q A + L+L ++E L+ G P+ +WAA AGV
Sbjct: 89 RYLRMRT-----VLANAAKQGDAVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+Q +Q L +R+ L + G P+ +WA AA ++ EL + G
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGET 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 128
>gi|113954655|ref|YP_729975.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113882006|gb|ABI46964.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 313
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLTA EE++L +Q ++L ++ SP ++++
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMEL-------TQDGSVSPDSEEFSSKD- 68
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 69 ------RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT +E+ +Q ++ L +E L ++ PT +W A + E
Sbjct: 26 YLREIGRVP-LLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAE 84
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L + G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 85 LNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 126
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQ 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L++ L G KM+ SN+RLV+SIAK Y A + DL+Q
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 284
LLT +E+ +Q L L+ +RE L G PT +WA A+ + D EL + + G
Sbjct: 23 LLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIAAGE 82
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 LAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 24 LLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L + L+ G PT +WA AAG+ + EL+R ++ G
Sbjct: 24 LLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHAGER 83
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 84 AKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQ 115
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQ 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L++ L G KM+ SN+RLV+SIAK Y A + DL+Q
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQ 114
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLT EE++L +Q ++ L+E GS TF
Sbjct: 17 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMM-------TLTE--DGSKTFEDHELTG- 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 67 ----KQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 24/117 (20%)
Query: 225 RLLTANEEMQLSAG--IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-- 280
RLL +E + G IQ +++ R+ L+ G P+ +WA AAGVD EL+ L
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 281 --------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE++ +Q L +RE L+ + P +WAAAA ++ EL + G
Sbjct: 23 LLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAEGET 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA D R+L+RRL G +D+MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 91 YQTWADLITSDSRDLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQ 146
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQ
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQ 167
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ + +E L+++ PT +WA+ + + +L + G
Sbjct: 33 LLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEADLHDTVRRGQR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 93 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQ 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+R L G K KMI +N+RLV++IA+N + + DL+Q
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQ 123
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQ
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQ 167
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+LT +E+ +Q ++ L+ +E L+++ PT A+ A+ + + EL+ ++ G
Sbjct: 32 MLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSEDELKGIMHRGRR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+SIAK YQ + DL+Q
Sbjct: 92 AKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQ 123
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q + L+ R L P+ +WA AAG+ EL + ++ G L
Sbjct: 23 LLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDAGDL 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 257 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
G + + WA D REL+ RL G +D+MI +N+RLV+++AK YQ GM L DLV
Sbjct: 107 GLTQGYETWANLISTDSRELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLV 166
Query: 317 Q 317
Q
Sbjct: 167 Q 167
>gi|87125501|ref|ZP_01081346.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86166801|gb|EAQ68063.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLT EE++L +Q++++L +E +P +++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQEMMRL-------TEDGTLAPDHDGFSSHD- 68
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 69 ------RRMIRVGKRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 72/143 (50%)
Query: 175 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
+ RR + K + + + S++ RP++ + L+ S LL+ E ++
Sbjct: 154 RQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVR 213
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L LE + L +R G P+ Q A + + + ELR R+ L ++K+ SN
Sbjct: 214 LSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSN 273
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 274 VRLVMSIAQRYDNMGAEMADLVQ 296
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL A+EE++L+ ++ L +++ L+ L G P
Sbjct: 54 RPSGYNKTEHDDAVGAFFKEMARYPLLKADEEVELARRVRFLEEVKDLQAALELELGQQP 113
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
+ + A+ + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 114 SKNEVASKFEMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 173
Query: 321 L 321
+
Sbjct: 174 M 174
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|428213655|ref|YP_007086799.1| sigma-70 family RNA polymerase sigma factor [Oscillatoria acuminata
PCC 6304]
gi|428002036|gb|AFY82879.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoria
acuminata PCC 6304]
Length = 619
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ L+ +Q ++LE ++ L+ + PT ++WA A G+ +L ++ G
Sbjct: 198 LLKREDEISLAQQVQRWIQLEQGKQSLNSKLHREPTRSEWANATGLSLSQLEDAISKGRK 257
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ++ SN+RLV+SIAK YQ G+ L DL+Q
Sbjct: 258 AQKSLVYSNLRLVVSIAKIYQHRGLELLDLIQ 289
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 57 LLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKR 116
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 117 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 148
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQ 273
R+LRA LLTA+EE+ L +Q+ L E L R GG +P+ WA++ +
Sbjct: 17 RHLRAIGRVP-LLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSP 75
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R+L+R+L ++M+T+N+RLV+S+A+ ++L DL+Q
Sbjct: 76 RQLQRQLRLAERASEQMVTANLRLVVSLARRISHRRLDLDDLIQ 119
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + L+ L+E L+ PT +WA A ++ ++L + G +
Sbjct: 27 LLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEKGEV 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 87 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 118
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 157 QWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ G +WA +D EL + G
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L +E L + P+ ++WAA + EL + G
Sbjct: 32 LLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETELNHLMVQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 127 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 186
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++++ S RLV+SIA YQG G++LQDL+Q
Sbjct: 187 RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 220
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I +L ++E LS G P+ +WA AG+D
Sbjct: 90 RYLRL-----RIVLANAAKQGDTVIVPYQRLIEVQERLSSELGHRPSLERWAKTAGIDLA 144
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 145 DLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 204
Query: 313 QDLVQ 317
DLVQ
Sbjct: 205 LDLVQ 209
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ L +Q ++KL +E L E G T +W AG+ Q EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ P+ +WA + ++++ + G
Sbjct: 32 LLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L + L+E+ PT +W D+ L + ++ G
Sbjct: 32 LLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQGTW 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRGLELLDLIQ 212
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETE 81
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+++ + G K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L +E L+++ PT +WA + EL + G
Sbjct: 32 LLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAELPETIKRGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L +++ L+E LS G + Q A + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KMI SN+RLV+SIAK Y G+ DL+Q A+
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAM 174
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LL+ EE++ +Q + L +RE L+ + G PT +WA A+ ++ E
Sbjct: 14 YLREIGKVP-LLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLE 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L + + K +M+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 73 LNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQ 114
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF---AQWAAAAGVDQRELRR 278
S RLL A+EE+ L+ +Q L E +R L E G + A WA A V +LR
Sbjct: 66 CSGRLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRA 125
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G+ + + ++N+RLV+SIAK Y+ G+ +DL+Q
Sbjct: 126 ARSRGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQ 164
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
P+ Q +D +R S LLT +E+ L +Q+L+ ++ + L + G PT
Sbjct: 4 PNDQTSSDADLVRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQ 63
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ A + + +++R++ +G K++M++SN+RLV+SIAK Y M L DLVQ
Sbjct: 64 EELANSLDLSINQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQ 118
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 22/115 (19%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 281
RLL AN Q A I L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 107 RLLLANAAKQGDALIVLYLQLIEVQERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGK 166
Query: 282 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 167 RRWGEIAQLTVEELDEIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 221
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L ++ L+ + P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 123
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 224 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 20 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 79
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++++ S RLV+SIA YQG G++LQDL+Q
Sbjct: 80 RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + AN Q I L+L ++E LS G P+ +WA AG++
Sbjct: 85 RYLRMRT-----VLANAAKQGDEVIVPYLRLIEVQERLSSELGHRPSLERWATTAGIELP 139
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 140 DLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 199
Query: 313 QDLVQ 317
DLVQ
Sbjct: 200 LDLVQ 204
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 52 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 111
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ EL++ + G C K
Sbjct: 112 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 171
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 172 DHMIKANLRLVVSVAKKYQNRGLELLDLIQ 201
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 22/115 (19%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 281
RLL AN Q A + L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 110 RLLLANAAKQGDALVVPYLQLIEVQERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGK 169
Query: 282 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 170 RRWAEIAKLTVEELDQIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 224
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 274
YLR LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV
Sbjct: 16 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAA 74
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 75 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G
Sbjct: 27 LLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQGTQ 86
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV++IAK YQ + L DL+Q
Sbjct: 87 AKQKMMVANLRLVVAIAKKYQRRNLELMDLIQ 118
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 11/93 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLT +E+ L +Q +++L ERC + + + +++R +R G
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLH-------ERCAMAGGVGEACSYNDIEKRTMR----VGE 64
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD+MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 65 RAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 306
+R+R+ G +++++ SN+RLV++IA Y+
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRYK 163
>gi|148240072|ref|YP_001225459.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147848611|emb|CAK24162.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 313
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLT EE++L +Q L++L + AA
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLT----------------EDGSIAAD 60
Query: 271 VDQRE--LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
DQ + RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 61 SDQFDGKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ +N Q + L++ ++E L+ G P+ +WA+AAGV+
Sbjct: 89 RYLRM-----RIVLSNAAKQGDEILIPYLRVIEVQERLASELGHRPSIERWASAAGVEVL 143
Query: 275 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL++ L G + K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA AG+D +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 146 HWAEIAGMDVQELDRIQKAGIRAKEHMIEANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-WAAAAGVDQRELRRRLNYGI 284
LL+ +E+ L +QDL++LE L L G + A AG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 117
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 28 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 87
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ EL++ + G C K
Sbjct: 88 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 147
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 148 DHMIKANLRLVVSVAKKYQNRGLELLDLIQ 177
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP-TFAQWAAAAGVDQR 274
YLR T RL TA EE+ LS I+ L+ R+ ER G P T QWA +
Sbjct: 258 YLRDITKIDRL-TAEEEIMLSKKIRTGYILKEERKKF-ERALGHPITKDQWAGHMHMAVG 315
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L +L+ L +D+M+ +N+RLV+S+ K Y G+ + DL+Q
Sbjct: 316 DLDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQ 358
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L +E L+++ PT +WA + + L+++L G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+++AK YQ ++ DL+Q
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQ 130
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
S LLT E +QLS IQ L LE + L ER G P+ Q A + + + +L+ L
Sbjct: 202 SEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIE 261
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++++ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 262 CSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQ 296
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
S LL+ E + LS I+ L LE + L ER G P+ Q A + + + ELR R+
Sbjct: 197 SEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISRTELRARMIE 256
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 257 CTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ +Q ++ L ++E L + T +WA A E+++ ++ G
Sbjct: 36 LLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKR 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 96 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 127
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
F +WA A + ELR L+ G K +MI +N+RLV+SIAK YQ G++L DL+Q
Sbjct: 126 FQKWAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLDLLDLIQ 181
>gi|318041996|ref|ZP_07973952.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0101]
Length = 318
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLT +E+ L +Q ++ L ERC + + + +++R +R G
Sbjct: 25 QLLTPEQELMLGRKVQAMV-------ALHERCHSAGGVGEACSYNDIEKRTMR----VGE 73
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD+MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 74 RAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQ 106
>gi|88809137|ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 313
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLT EE++L +Q L++L GS AA +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQKLMQLTE---------DGSI-----AADSE 62
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 63 LFDSKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA A +D +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQ
Sbjct: 113 YEAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR-------------------- 278
+Q ++ LE +R+ L+ R P+ QWA A + ELRR
Sbjct: 89 LQAMVDLEVVRQRLASRLTHQPSHGQWAEACDLPVAELRRLLQEGHRTWAACLDLSLSDL 148
Query: 279 --RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RL G +D+MI +N+RLV+++AK YQ G+ L DLVQ
Sbjct: 149 QQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQ 189
>gi|356506634|ref|XP_003522082.1| PREDICTED: uncharacterized protein LOC100794777 [Glycine max]
Length = 196
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
L +LE +R + E + + WA +GVD++ L++ L+ G C D++I S+ LV+ +
Sbjct: 120 LAELEKIRTAIEEDTKPVASLSTWAETSGVDEKVLQQLLHCGYYCWDELIQSSRSLVVYL 179
Query: 302 AKNYQGAGMNLQDLVQL 318
A+ Y+G G+ L DL+QL
Sbjct: 180 ARKYRGMGIALDDLLQL 196
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 183 EKAAANVMSVKSGSTSRRKR---------PSVQEVDYSDPL--RYLRATTSSSRLLTANE 231
EK V SG ++R++R +V EV++ + L Y++ S +L+ E
Sbjct: 125 EKTRKKVPVTCSGISARQRRIGAKKKTNVKAVSEVNFQNNLVKGYVKGVISD-HVLSHAE 183
Query: 232 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
++LS I+ L+L+ + L++R G P+ Q A + + + EL+ L L ++K+
Sbjct: 184 VVRLSKKIKSGLRLDEHKSRLTDRLGCEPSDEQLAMSLKISRAELQAWLMECHLAREKLA 243
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
SN+RLV+SIA+ Y G + DLVQ
Sbjct: 244 MSNVRLVMSIAQRYDNMGAEMSDLVQ 269
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 21/152 (13%)
Query: 185 AAANVMSVKSGSTSRRKRPSVQEVDYS----------DPLR-YLRATTSSSRLLTANEEM 233
A+ +V V+S + + ++E+D S DP+R YLR LLTA +E+
Sbjct: 94 ASIDVFDVESEKDAAKLTQQIEEIDLSKISLDKTVSSDPVRMYLREIGKVD-LLTAKQEI 152
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK---- 289
+L A + K + L++ G PT + A G+D++ ++ DK
Sbjct: 153 EL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKDWNDKQGEA 211
Query: 290 ----MITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+I +N+RLV+SIAK Y G G+ DL+Q
Sbjct: 212 AERMLIQANLRLVVSIAKKYMGRGLTFLDLIQ 243
>gi|352096241|ref|ZP_08957121.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351676935|gb|EHA60086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 313
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 22/111 (19%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLTA EE++L +Q ++L +
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQ------------------DGSVS 58
Query: 271 VDQREL----RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D E RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 59 ADSEEFSSKDRRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ ++ L+ +E +++ L G PT W+ AA + EL+ + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +M+ +N+RLV+S+AK Y + + DL+Q
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQ 114
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R L + + + I+ + L +E L+ G P+ +WAA+AG+
Sbjct: 89 RYLRM-----RALCVSHAAKDDSIIKTYITLIEAQERLTSELGHRPSLERWAASAGISVM 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL+ L N GI K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKPALAVGKRRWAEIAKITVEELEQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGI 284
LLT +E+ +Q + L+ +++ L+++ G P+ +WA A+G +D +L + + G
Sbjct: 27 LLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIADGE 86
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K K++ +N+RLV+SIAK Y + L DL+Q
Sbjct: 87 SAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQ 119
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+CK D MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQ 190
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 284
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 285 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+CK D MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQ 190
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN A I+ L+L ++E L+ G P+ +WA AG+
Sbjct: 89 RYLRM-----RIVLANAAKLGDAVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLS 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLANGKRRWAEIAKLTVEELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|352094648|ref|ZP_08955819.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351680988|gb|EHA64120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 308
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 16 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 64
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 65 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT ++E+ + +Q ++ +E R L+ + PT + A + G ++ EL+ + G
Sbjct: 21 LLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEAELQSVIQQGQK 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K KM+T+N+RLV+S+AK YQ ++ DL+Q AL
Sbjct: 81 AKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGAL 116
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+QWA A +D EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 43/150 (28%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 258
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 50 TDLVRLYLQEIGRVRLLGKDEEVSEAQKVQRYVQLVELRDTEAETKGGVLQTYVNLLKVR 109
Query: 259 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 287
P+ +WAAA GV+ +L++ + G C K
Sbjct: 110 DRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAELANLSVEELKQVQREGLQAK 169
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 170 DHMIKANLRLVVSVAKKYQNRGLELLDLIQ 199
>gi|116073370|ref|ZP_01470632.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068675|gb|EAU74427.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 313
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + AT LLT EE++L +Q L+ L + G P + ++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMALT--------QDGTIPIDSDQFSSKD 68
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 69 ------RRIIRVGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
+V EVD YLR LL+ +E+ L +QDL++LE L L G
Sbjct: 26 AVAEVDLVRS--YLRDIGRVP-LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAP 82
Query: 264 Q-WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ A AG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 83 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 137
>gi|113953662|ref|YP_731106.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9311]
gi|113881013|gb|ABI45971.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9311]
Length = 307
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 15 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 63
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 64 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 44/151 (29%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIARFVHLIEVR 122
Query: 250 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 286
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVETIERIQAEGVEA 182
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 213
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA A ++ REL+ L G KD MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 203 YGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQ 258
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L+ R L+++ PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 127
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 44/151 (29%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIGRFVHLIEVR 122
Query: 250 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 286
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEA 182
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 213
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG---------------------SPTFAQ 264
LL +EE+ + +Q ++L LR+ +E+ GG P+ +
Sbjct: 89 LLERDEEVAEAQRVQQHMELLALRDRAAEKTGGLLATYVHLLNTRARLTAQLGHRPSLER 148
Query: 265 WAAAAGVDQRELR------RRL----------------NYGILCKDKMITSNIRLVISIA 302
WA A+GVD +L+ +RL N G K+ MI +N+RLV+S+A
Sbjct: 149 WAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVA 208
Query: 303 KNYQGAGMNLQDLVQ 317
K YQ G+ L DL+Q
Sbjct: 209 KKYQNRGLELLDLIQ 223
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y++ S LLT + + LS I+ L LE + L ER G PT Q AA+ + + E
Sbjct: 185 YVKGVVSEE-LLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAE 243
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+ +L L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 244 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 285
>gi|302793696|ref|XP_002978613.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
gi|300153962|gb|EFJ20599.1| hypothetical protein SELMODRAFT_177039 [Selaginella moellendorffii]
Length = 458
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
R LT+ EE++L + + L +R L P+ +WA AA D R LRRRL G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATAANTDFRTLRRRLQLGE 217
Query: 285 LCKDKMITSNIRLVISIAKNYQ--GAGMNLQDLVQ 317
++K+I N RLV+ +A+ Y+ +L+DL Q
Sbjct: 218 AAQNKLIEHNCRLVLFLARRYERDAGSFSLEDLCQ 252
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y++ S LLT + + LS I+ L LE + L ER G PT Q AA+ + + E
Sbjct: 243 YVKGVVSEE-LLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAE 301
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+ +L L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 302 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 343
>gi|124025343|ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. NATL1A]
Length = 307
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 282
LLT +E+ L +Q ++ L+ERC GG+ ++++A ++R
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGNGPECEYSSAE-------KKRFKA 61
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT E +QLS I+ L LE + L ER G P+ Q A + + + +LR L L
Sbjct: 199 LLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSL 258
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++K+ SN+RLV+SIA+ Y G + DL+Q
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDTNGTEMADLIQ 290
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GVDQREL 276
IQ +++ +R+ L+ R G P+F +W A G++ +EL
Sbjct: 102 IQRYVEMIKIRDRLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKEL 161
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ GI + +MI++N+RLV+SIAK YQ G+ L DL+Q
Sbjct: 162 EQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQ 202
>gi|33862619|ref|NP_894179.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33634535|emb|CAE20521.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 313
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 22/125 (17%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSL------- 51
Query: 253 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
++ +P ++ RR + G K++M+ +N+RLV+S+AK YQG G+ L
Sbjct: 52 TQDGSVAPDDKEFTTHQ-------RRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLEL 104
Query: 313 QDLVQ 317
DL+Q
Sbjct: 105 LDLIQ 109
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 268
SDP+ + +T LLT EE++L +Q ++ L +G +V SE T Q
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQVMMNLTEDGSIDVKSEEF----TSHQ---- 68
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 69 --------RRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
QWAA A + EL R GI K+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 157 QWAALASLTVEELERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQ 210
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 203 PSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
PS E SD L YL R+ T EE+ L+ IQ L ++G RE L+ R G
Sbjct: 22 PSRSEAQGSDDLVDLYLNEIGRIPRV-TPEEEIHLARRIQAKLAIDGAREELAMRLGRPS 80
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA G D + L G+ + K+I +N+RLV+SIAK Y G + DL+Q
Sbjct: 81 PEEDVAAFMGRDPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQ 137
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 44/151 (29%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 249
+D +R RLL +EE+ + +Q ++L EGL R
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 250 EVLSERCGGSPTFAQWAAAAGV-DQRELRR----------------------RLNYGILC 286
+ L+ + G P+ +WAA AGV + EL+R + GI
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQ 253
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L ++ ++ +E L T +WA G+ REL+ L G
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQVE-KSYITEEEWAKEIGISVRELQLILKRGKR 78
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
K+KMI +N+RLV++++K YQG G+ DLV
Sbjct: 79 AKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 109
>gi|425453974|ref|ZP_18833723.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
gi|389799829|emb|CCI20645.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9807]
Length = 443
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 271
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQRWAHLAGL 181
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN Q I +L ++E LS G P+ +WA AG++
Sbjct: 89 RYLRL-----RIVLANAAKQGDEVIVPYQRLIEVQERLSSELGHRPSLERWATTAGIELS 143
Query: 275 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 NLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|124023660|ref|YP_001017967.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123963946|gb|ABM78702.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 313
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 193 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 252
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQ----- 53
Query: 253 SERCGGSPTFAQWAAAAGVDQREL----RRRLNYGILCKDKMITSNIRLVISIAKNYQGA 308
+ D +E RR + G K++M+ +N+RLV+S+AK YQG
Sbjct: 54 -------------DGSVAPDDKEFTTHQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGK 100
Query: 309 GMNLQDLVQ 317
G+ L DL+Q
Sbjct: 101 GLELLDLIQ 109
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
S LL+ E + LS I+ L LE + L E+ G P+ Q A + + + ELR R+
Sbjct: 197 SEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIE 256
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 257 CSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQ 291
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
+LTA EE+ L+ I+ +++E L + G PT +W G+ ++R+ L
Sbjct: 87 MLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVGLKSIDDIRKNLKRAS 146
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +I +N+RLV+S AK YQ G++ QDLVQ
Sbjct: 147 KSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQ 179
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ L +E L+ + PT +WA + L +L+ G
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV+++AK YQ + DL+Q
Sbjct: 104 AKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQ 135
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 271
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGL 181
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 182 EVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 207
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCG------GSPTFAQWAAAAGVDQRELRRR 279
LL+ +E+ L +Q ++ L ++E L+ + + A WAAAA + + EL
Sbjct: 88 LLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESELDHH 147
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G K KMI +N+RLV+++AK YQ + DL+Q
Sbjct: 148 MRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQ 185
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 271
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGL 181
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 227
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----- 280
L T E + I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 102 LETREEFLDSHPAIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKT 161
Query: 281 -----------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 215
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 160 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 208
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 209 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 268
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 269 VRLVMSIAQRYDNLGAEMSDLVQ 291
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ L +Q ++ L +ERC GGS A D E +R L
Sbjct: 16 QLLTPEQELTLGRKVQAMVSL-------NERCAQAGGS------GPACEFDDLE-KRTLR 61
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K +M+T+N+RLV+++AK YQG G++L DL+Q
Sbjct: 62 NGERAKQQMVTANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|254430393|ref|ZP_05044096.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197624846|gb|EDY37405.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 302
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 17/95 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 282
LLT +E+ L +Q + VL ERC GG A D RE +R L
Sbjct: 13 LLTPEQELTLGRKVQAM-------AVLQERCREAGGQ------GPACEYDDRE-KRVLRL 58
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQ G++L DL+Q
Sbjct: 59 GERAKNQMITANLRLVVNLAKRYQNKGLDLLDLIQ 93
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 32 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 74
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K++MI +N+RLV+S+AK YQG G+ DL+Q AL
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGAL 110
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 25/102 (24%)
Query: 241 DLLKLEGLREV-LSE--RCGGSPTFAQWAAAAGVDQRELR-------------------- 277
D+ +LE L E L E + G P+ +QWA A G+ ELR
Sbjct: 61 DVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDMSPGD 120
Query: 278 --RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R+L +G K++MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 121 LQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQ 162
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA A ++ +EL R GI K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 157 HWAELANLEVQELERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q ++ L + L ++ + +W+ +A + + EL R L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 124
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + +T LLTA EE++L +Q ++ +E GS F
Sbjct: 17 SDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMM-------AFTE--DGSKDFK----VED 63
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ++ RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 64 LTTKQ-RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 109
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 268 VRLVMSIAQRYNNLGAEMSDLVQ 290
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 38 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
K++MI +N+RLV+S+AK YQG G+ DL+Q AL
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGAL 116
>gi|87302558|ref|ZP_01085375.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
gi|87282902|gb|EAQ74859.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
Length = 307
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 19/96 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRR-LN 281
LLT +E+ L +Q ++ L+ERC GG+ D ++ RR +
Sbjct: 17 LLTPTQELTLGRKVQAMV-------ALNERCALAGGN--------GEACDYNDVERRTIR 61
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G KD+MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 62 TGERAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA A ++ +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQ
Sbjct: 91 YVAWAEQAAIEAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQ 146
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 250 EVLSERCGG-----SPTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
E LS+ CG PT QWA G+ +EL + G K+ MI +N+RLV+S
Sbjct: 150 ERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVS 209
Query: 301 IAKNYQGAGMNLQDLVQ 317
+AK YQ G+ L DL+Q
Sbjct: 210 VAKKYQNRGLELLDLIQ 226
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 157 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 205
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 206 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 265
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 266 VRLVMSIAQRYDNLGAEMSDLVQ 288
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------NYGILC 286
R L + G SP+ +WAA +GV+ +L+ RR GI
Sbjct: 106 RSRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKA 165
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 166 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQ 196
>gi|157412994|ref|YP_001483860.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157387569|gb|ABV50274.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 307
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQ 181
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-- 272
RY+R ++ T E + I+ + L + L+ + G P+ +WA AGVD
Sbjct: 89 RYMRLLDLRAKFATPEEPV-----IEHFVHLIETHDRLASQLGHRPSLERWATTAGVDVA 143
Query: 273 ----------QR----------ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
QR EL + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 TLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DL+Q
Sbjct: 204 LDLIQ 208
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 43/150 (28%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL---------------------R 249
+D +R RLL +EE+ + +Q LKL L +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCK 287
E L+ G P+ +WA AG+++ EL+ L+ G + K
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQ 211
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----- 280
L T E ++ I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 102 LETREEFLESHPVIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKT 161
Query: 281 -----------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 162 AWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 215
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLTA EE++L+ I+ + L +++ + R G P AQ++ D E
Sbjct: 90 YLREIGRVP-LLTAEEEVELAKAIE--IGLYAEQKLRAARTG--PVPAQYSPEWFEDLNE 144
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L R G L K ++I SN+RLV+S+AK Y G G+ L DL+Q
Sbjct: 145 LVRE---GKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQ 183
>gi|302774234|ref|XP_002970534.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
gi|300162050|gb|EFJ28664.1| hypothetical protein SELMODRAFT_147096 [Selaginella moellendorffii]
Length = 458
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
R LT+ EE++L + + L +R L P+ +WA A D R LRRRL G
Sbjct: 158 RYLTSQEEIELVELLTPVKHLHQVRSELRRVLRREPSDDEWATTANTDFRTLRRRLQLGE 217
Query: 285 LCKDKMITSNIRLVISIAKNYQ--GAGMNLQDLVQ 317
++K+I N RLV+ +A+ Y+ +L+DL Q
Sbjct: 218 AAQNKLIEHNCRLVLFLARRYERDAGSFSLEDLCQ 252
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 21/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 266
SDP+R T RLLTA EE+ L+ I+ L KL R++ SP Q
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGLFASEKLAATRKI-------SPQLRQDL 153
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A D G + K K++ +N+RLV+SIAK Y G GM L DL+Q
Sbjct: 154 QAVEQD----------GQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|254526924|ref|ZP_05138976.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538348|gb|EEE40801.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|299473209|emb|CBN78785.1| RNA polymerase [Ectocarpus siliculosus]
Length = 627
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA-AGVDQRE-LRRRLNYG 283
LLT EE++L +Q+LL+ E +R L + G + T +WAA A +D E L R +
Sbjct: 173 LLTRTEEIELGRKVQELLRWERVRMFLELQLGRAATMEEWAAELATMDGVEGLEREIGIM 232
Query: 284 ILCKDKMITSNIRLVISIA--KNYQGAG----MNLQDLVQ 317
+D+MI+ N+RLV+ IA K Y+GA ++L+D++Q
Sbjct: 233 KAARDRMISCNLRLVVHIARRKFYKGASGTLKVSLEDMIQ 272
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 44/151 (29%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR--------------------- 249
+D +R RLL +EE+ + +Q +KL LR
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 250 -EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL----------------------C 286
+ L+ + G P+ +WA AAG+D +L+ ++ G L
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
P Q SDP+ + T LLT EE++L +Q +++L + P+
Sbjct: 8 PREQRRRGSDPISWYLGTIGRVPLLTPAEEIELGNQVQAMMQL------IDSGVEDPPSL 61
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
Q ++ L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 62 RQ------------KQLLRLGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 104
>gi|67921071|ref|ZP_00514590.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
gi|67857188|gb|EAM52428.1| Sigma-70 region 2:Sigma-70 region 1.2 [Crocosphaera watsonii WH
8501]
Length = 250
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+QWA A +D EL GI KD++I +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEIIKANLRLVVSVAKKYQHRGLELLDLIQ 210
>gi|72381853|ref|YP_291208.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. NATL2A]
gi|72001703|gb|AAZ57505.1| possible type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
Length = 307
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 282
LLT +E+ L +Q ++ L+ERC GG ++++A +++
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGHGPECEYSSAE-------KKKFKA 61
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL+A EE++L+ I+ L+ E +R+ L+++ +P+ +W A Q R+ L
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K +MI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 163
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQ----------------------WAAAAGVDQREL 276
+Q+L+ LE ++ L+ + G P Q WA + + EL
Sbjct: 67 LQELIDLEDDQQRLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAEL 126
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ L++G +D+MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 127 KQALHHGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|407327705|dbj|BAM45410.1| sigma factor 5 [Marchantia polymorpha]
Length = 635
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+A EE L++ ++ KLE + + E G P+ +WA AA +D L+R++ G
Sbjct: 335 LLSAEEEYSLASLMKPAKKLEKTFKAIGEELGRDPSDEEWAKAAQLDVHTLKRQVLLGRA 394
Query: 286 CKDKMITSNIRLVISIAKNYQ--GAGMNLQDLVQ 317
++K+I N+RLV+ A YQ + ++L DL Q
Sbjct: 395 ARNKLIQHNLRLVLFQAHKYQKDNSSLSLFDLCQ 428
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 268
+DP+ + AT LLT EE++L +Q ++ L +G+ ++E+ +
Sbjct: 17 TDPISWYLATIGRVPLLTPAEEIELGNQVQVMMNLTEDGM---VNEKTKKFTSHE----- 68
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 69 --------RRSIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD +R LLT+++E+ + +Q ++ L+ + L+++ PT + A
Sbjct: 6 SDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELANFLN 65
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ++ + L G K KMIT+N+RLV+SIAK YQ + DLVQ
Sbjct: 66 KTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|325673633|ref|ZP_08153324.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|325555654|gb|EGD25325.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 448
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA+EE++LS I+ L L E R A ++R+LR+ + G
Sbjct: 162 LLTADEEVELSRSIEAGLYASHLLEAYPSRT---------TRPAPAERRDLRQIVQDGRS 212
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +MI +N+RLV+S A+NY+G G+++ DLVQ
Sbjct: 213 ARTRMIEANLRLVVSTAQNYEGRGLDMLDLVQ 244
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR R++ AN I L+L ++E L+ G P+ +WAA A +
Sbjct: 89 RYLRM-----RIVLANAAKLGDEVIIPYLRLVEVQERLTSELGHRPSLERWAATADIVLS 143
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+LR L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 12/143 (8%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 234
AR R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARPRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 235 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 294
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+SIA+ Y G + DLVQ
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQ 290
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
R+L+ S LLTA EE+ L+ +Q ++ L E+ + W+ G+
Sbjct: 13 RFLKIIGRYS-LLTAEEELHLAHQVQRMM-------ALLEQRRQHESLEDWSRRLGIPLE 64
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
EL++ L G K +M+ N+RLV+SIAK Y+ G+ DL+Q
Sbjct: 65 ELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RVVLANAAKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 273
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 274 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + +E+ + L L ++E L+ G P+ +WA AG++
Sbjct: 115 RYLRMRTVLADAAKEGDEI-----VAPFLNLVQVQERLTSELGHRPSLERWANTAGIELV 169
Query: 275 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 DLKPTLANGKRRWAEIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 313 QDLVQ 317
DLVQ
Sbjct: 230 LDLVQ 234
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A WA G + EL + GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 155 ASWAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|75812393|ref|YP_320012.1| sigma-70 [Anabaena variabilis ATCC 29413]
gi|75705149|gb|ABA24823.1| Sigma-70 [Anabaena variabilis ATCC 29413]
Length = 314
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S +LT +E+ L+ ++ + ++ ++VL E+ Q AA G + E
Sbjct: 11 YLREI-SKYPMLTPEQEITLARQVKQMTVVQQHKQVLEEQLHQQLNIQQLAADMGKSETE 69
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + L G K+KMI +N+RLV++IAK Y+ + + DLVQ
Sbjct: 70 VFQILRLGQKAKEKMIAANLRLVVAIAKKYRWSQLEFLDLVQ 111
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +EE++L+ ++ L ++ ++ L G T Q A + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 182
>gi|148239078|ref|YP_001224465.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847617|emb|CAK23168.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 308
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ + +Q ++ L +ERC GGS +++ ++R ++R
Sbjct: 16 QLLTPEQELTMGRKVQAMVSL-------TERCHLAGGSGPACEYSDD---EKRTIKR--- 62
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA A V EL L GI K KMI +N+RLV+SIAK YQ G+ L DL+Q
Sbjct: 139 WANLAQVKLSELETILANGIKAKQKMINANLRLVVSIAKKYQNRGLELLDLIQ 191
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ +Q +++ L+E L E+ + T +WA V ++ L++ + G
Sbjct: 41 LLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQR 100
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KMI +N+RLV++IAK YQ M DL+Q
Sbjct: 101 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQ 132
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+ + ++ LLT EE++L +Q L+ L ++ + S F
Sbjct: 17 SDPISWYLSSIGRVPLLTPAEEIELGNQVQTLMSLTEDGQIKEQ----SKEFTS------ 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ----HQRRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 208 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQW 265
V D LR YLR LL+ +E+ L +Q+L+ LE LRE L+ R GG P+
Sbjct: 21 VPTGDSLRSYLRDIGRVP-LLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELL 79
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA AG+ LR+RL+ G K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 80 AAEAGLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 131
>gi|284042443|ref|YP_003392783.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283946664|gb|ADB49408.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 285
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 265 WAAAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
W ++ EL RR+ G L K++M+ SN+RLV+SIA++YQG G+ + DLVQ
Sbjct: 28 WPLLTPAEEIELARRIERGDLSAKERMVNSNLRLVMSIARHYQGQGLGMGDLVQ 81
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 212 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
DP+R LLTA+EE M++ AG + KLE + +
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFED-------------EKIE 198
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +QR L R G+ K ++I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 199 LSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQ 248
>gi|78212534|ref|YP_381313.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78196993|gb|ABB34758.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 309
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 19/97 (19%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 280
+LLT +E+ + +Q ++ ++ERC GGS +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMV-------AITERCHLAGGSGPACEYSDEEKGVIRR------ 63
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MITSN+RLV+++AK YQG G++L DL+Q
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQ 98
>gi|124023525|ref|YP_001017832.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. MIT 9303]
gi|123963811|gb|ABM78567.1| Putative type II alternative sigma factor, sigma70 family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 308
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 17/95 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 282
LLT +E+ + +Q ++ L++RC GG+ +++ DQR RR
Sbjct: 17 LLTPEQELTMGRKVQAMV-------ALTDRCHLAGGAGPECEYSD----DQRLTIRR--- 62
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|88809561|ref|ZP_01125068.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786311|gb|EAR17471.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 211
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ + +Q + L+ERC GGS +++ D++ + +R
Sbjct: 16 QLLTPEQELTMGRKVQAM-------ATLTERCMLAGGSGPACEYSE----DEKRIIKR-- 62
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q L L R L G P+ +WA+ A + EL + G
Sbjct: 23 LLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQGGER 82
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+ +N+RLV+S+AK Y ++L DL+Q
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQ 114
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 22/91 (24%)
Query: 249 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILC 286
R+ L+ + G P+ +WA AA V E+++ LN G I
Sbjct: 120 RDQLTSQLGHRPSLEKWADAAEVSVFEVKQILNEGKRHWANLAGLKVQELEQIQKAGIEA 179
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 180 KNHMIKANLRLVVSVAKRYQNRGLELLDLIQ 210
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA AG++ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 153 RWAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|325283594|ref|YP_004256135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
gi|324315403|gb|ADY26518.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
Length = 487
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQD----LLKLEGLREVLSERCGGSPTFAQWA 266
+DP+R LLT EE+ L+ I+D ++LE E L +R
Sbjct: 184 NDPVRQYLHEIGRVPLLTLEEEIALARRIEDGEFARVELEEKGEELDDRG---------- 233
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R L+RR+ G + +I +N+RLV+SIAK Y G G+N DL+Q
Sbjct: 234 ------RRALQRRMEDGAAARQGLIEANLRLVVSIAKKYTGRGLNFLDLIQ 278
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 22/114 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI- 284
LL E + A I +L +LE L+ + + PT +WA AAG+ +L++R+ G
Sbjct: 55 LLQQRELAESDAAIGELHRLEELQRREANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQ 114
Query: 285 ---------------------LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD MI +N+RLV+++AK YQ GM + DLVQ
Sbjct: 115 AWAEQAQLEAKDVKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 63/149 (42%), Gaps = 42/149 (28%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS--------------------AGIQDLLKLEGLRE 250
+D LR LLT+ EE+ LS A I+ LL LE L++
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 251 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC----------------------KD 288
+ PT +WA AA + EL R LN G +D
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA +E M++ AG++ KLE S+R + T A
Sbjct: 138 GDPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAEKLES-----SDRGEIALTRA--- 189
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D R L R G+ K +I++N+RLV+SIAK Y G GM+ DL+Q
Sbjct: 190 -----DMRRLSRIEQVGLEAKQALISANLRLVVSIAKRYVGRGMHFLDLIQ 235
>gi|123967121|ref|YP_001012202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201487|gb|ABM73095.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 19/107 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLTA EE++L+ +Q++ K+ + E+ ER +
Sbjct: 49 SDSIGYYLSSIGRVPLLTAAEEIELAHHVQNMKKMLKIPEI--ERSSRN----------- 95
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R + G +D+M+++N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 96 ------RHLIKVGKRARDRMMSANLRLVVSVAKKYQNQGLELLDLVQ 136
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YL R+ A EE++LS IQ L ++ R ++ G P+ + AAA +
Sbjct: 55 YLNTIGRVPRIDHA-EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVST 113
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ G + K+I +N+RLV+S+AK Y G+ DL+Q
Sbjct: 114 LRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 22/98 (22%)
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR---------------------- 279
LKL + + L+ G PT +WAA +D+ LR++
Sbjct: 91 FLKLIEVHDRLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAV 150
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 151 LKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 188
>gi|308205502|gb|ADO18992.1| RNA polymerase sigma 70 subunit [Nostoc flagelliforme str.
Sunitezuoqi]
Length = 165
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ + +Q ++ +E R L+ + PT + A + G + E+ L+ G
Sbjct: 21 LLTPEQEITNARLVQQMMAIEEQRSNLALQLNREPTTRELATSLGQSEAEVESILHQGER 80
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K KM+T+N+RLV++IAK YQ + DL+Q
Sbjct: 81 AKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQ 112
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+D D + T LLTA EE++L+ +Q ++ L E+ + W+
Sbjct: 5 LDLQDAVGRFLKTIGRYSLLTAEEELRLAHQVQRMV-------TLLEQRQPHESVEGWSQ 57
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ EL++ L G K +M+ N+RLV+SIAK Y+ G+ DL+Q
Sbjct: 58 RLGIPLAELQQILRQGEAAKKRMVECNLRLVVSIAKRYRNRGLPFLDLIQ 107
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LL EE+ L+ I+ L+K+E + L SPT A+ A ++ +L L G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ K KMI SN+RLV+SIAK Y G+ DL+Q
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQ 147
>gi|291295726|ref|YP_003507124.1| RNA polymerase sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
gi|290470685|gb|ADD28104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
Length = 507
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 30/140 (21%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS-------AGIQDL-----LKLEGLREVLSER 255
+ SDP+R LLT EE+ L+ A Q L L E +R VL +
Sbjct: 159 ISTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEEGVAAAQRLAEETGLDAELIRHVLRSQ 218
Query: 256 CGGSPTFAQWAAA---------AGVD------QRELRRRLNY---GILCKDKMITSNIRL 297
GS A A VD RE++R L+ G +C+ +I +N+RL
Sbjct: 219 VQGSSRVASIPGTDLRIDPETIAAVDARLRALPREVKRYLHIARDGEICRQHLIEANLRL 278
Query: 298 VISIAKNYQGAGMNLQDLVQ 317
V+SIAK Y G G++ DL+Q
Sbjct: 279 VVSIAKKYTGRGLSFLDLIQ 298
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG KLE + L E
Sbjct: 151 GDPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRA-------- 202
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+QR L R + G+ K ++I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 203 -----EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQ 248
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + + E G P+ + +A + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|33862253|ref|NP_893814.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634471|emb|CAE20156.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLTA EE++L+ +Q++ K+ + E+ ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTAAEEIELAHHVQNMKKMLEIPEI--ERSS------------- 93
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
+ LR + G +D+M+++N+RLV+S+AK YQ G++L DLVQ A+
Sbjct: 94 ---KHLRL-IKIGKRARDRMMSANLRLVVSVAKKYQNQGLDLLDLVQEGAI 140
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ 306
+R + G + +++ SN+RLV++IA Y+
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRYK 163
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD +R LLT+++E+ +Q ++ ++ ++ LS++ PT A+ A
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
Q ++ + L G K KMIT+N+RLV+SIAK YQ + DLVQ
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQ 112
>gi|116075407|ref|ZP_01472667.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116067604|gb|EAU73358.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 310
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ + +Q ++ ++ERC GG+ ++ E +R +
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------AITERCMLAGGTGPACNYS-------EEEKRTIK 61
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 62 KGEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E +SE G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 284
LLTA EE LS +Q L+ +E + ++R G T +WAA G R+ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+ +M+ SN RLV +A+ Y G++ QDL+
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLL 100
>gi|260435993|ref|ZP_05789963.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260413867|gb|EEX07163.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 309
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 19/97 (19%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 280
+LLT +E+ + +Q ++ + +ERC GG+ +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMVSI-------TERCHLAGGTGPACEYSDEEKGVIRR------ 63
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MITSN+RLV+++AK YQG G++L DL+Q
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQ 98
>gi|255566078|ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 508
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
S LL+ E ++LS I+ L LE + L ER G P+ Q A + + + EL+ +
Sbjct: 202 SEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIA 261
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 262 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQ 296
>gi|33862729|ref|NP_894289.1| RNA polymerase sigma-70 factor family protein [Prochlorococcus
marinus str. MIT 9313]
gi|33634645|emb|CAE20631.1| Sigma-70 factor family [Prochlorococcus marinus str. MIT 9313]
Length = 308
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 17/95 (17%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 282
LLT +E+ + +Q ++ L+ RC GG+ +++ DQR RR
Sbjct: 17 LLTPEQELTMGRKVQAMV-------ALTNRCHLAGGAGPECEYSD----DQRLTIRR--- 62
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+Q
Sbjct: 134 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQ 179
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+Q
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQ 194
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+Q
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQ 194
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+Q
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQ 194
>gi|307107488|gb|EFN55731.1| hypothetical protein CHLNCDRAFT_35462 [Chlorella variabilis]
Length = 267
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
E+RRRL G+ ++ M+ N+RLV+SIAK Y G G+ LQDLV
Sbjct: 15 EVRRRLALGLQAREHMVNCNMRLVVSIAKKYVGRGLALQDLV 56
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG---VDQR---------------- 274
Q S ++ + L R+ L+ G P+ +WA AG VD +
Sbjct: 130 QASGPLERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASL 189
Query: 275 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
EL + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 190 TVAELEEAIREGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 235
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+Q
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQ 186
>gi|78185860|ref|YP_378294.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78170154|gb|ABB27251.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 328
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 32/137 (23%)
Query: 193 KSGSTSRRKRPSVQEVDY-----------SDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
KS + S RK+P++ +D + + ++ LLTA EE++L+ +QD
Sbjct: 9 KSTTQSTRKQPALPSTGRRSASRQSGRLATDSIGFYLSSIGRVPLLTAAEEIELAHHVQD 68
Query: 242 LLKLEGL-REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 300
+ +L+ L +E L+ R + ++ G +D+M+ +N+RLV+S
Sbjct: 69 MKQLKELPQEELTSRQ--------------------KHKIRMGKRARDRMMAANLRLVVS 108
Query: 301 IAKNYQGAGMNLQDLVQ 317
+AK YQ G+ L DLVQ
Sbjct: 109 VAKKYQNQGLELLDLVQ 125
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 26/123 (21%)
Query: 195 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 254
G SRR+ SDP+ + +T LLT EE++L +Q +++L
Sbjct: 9 GGASRRR--------GSDPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLT-------- 52
Query: 255 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 314
+ DQ+ ++ + G K++M+ +N+RLV+S+AK YQG G+ L D
Sbjct: 53 --------EEEPENGYTDQQ--KKTIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLD 102
Query: 315 LVQ 317
L+Q
Sbjct: 103 LIQ 105
>gi|318040246|ref|ZP_07972202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGI 284
LLT +E+ L +Q+L+ LE RE L R GG PT AQ A AA + ++L++RL G
Sbjct: 35 LLTHEQEITLGRQVQELMALEEQREELRLRAGGEDPTDAQLAEAAQLTPQQLKKRLRSGQ 94
Query: 285 LCKDKMITSNIRL 297
K++M+ +N+RL
Sbjct: 95 RAKERMVAANLRL 107
>gi|425464343|ref|ZP_18843665.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
gi|389833688|emb|CCI21586.1| RNA polymerase sigma-C factor [Microcystis aeruginosa PCC 9809]
Length = 414
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA----------------------AGV 271
Q A +Q +KL +R+ L+ + P+ +WA AG+
Sbjct: 101 QGDAQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGL 160
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 161 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|166363676|ref|YP_001655949.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166086049|dbj|BAG00757.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 414
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA----------------------AGV 271
Q A +Q +KL +R+ L+ + P+ +WA AG+
Sbjct: 101 QGDAQVQQFVKLIEVRDQLTAQLAHRPSLERWAKTAQIRVSELKNALKAGKQRWAHLAGL 160
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 161 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 29/117 (24%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG++ KLE A
Sbjct: 150 GDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLE-------------------A 190
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A AG + R L R N G+ K +I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 191 ADAGELELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 247
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 8/108 (7%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R YLR LLTA EEM+L+ I+ L +E ++ L E GG
Sbjct: 105 DPVRMYLRDIGRHP-LLTAEEEMELAEKIR--LGVEAEKK-LQELFGGRSE--DELTDEE 158
Query: 271 VDQR-ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ+ EL ++ G + ++ SN+RLV+S+AK Y G G+N DL+Q
Sbjct: 159 LDQKDELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQ 206
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAAAGVDQR 274
YL+A RLLTA++E++L+ ++ L E L ++ + R P
Sbjct: 54 YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLDLPPAARGSRRPV------------- 99
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELRR + G KD ++ +N+RLV+SIAK Y G GM L D++Q
Sbjct: 100 ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGMALLDVIQ 142
>gi|78214100|ref|YP_382879.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78198559|gb|ABB36324.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 377
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ WA A ++ ++L+ L G KD MI +N+RLV+++AK YQ GM + DLVQ
Sbjct: 113 YQAWAEQAQLEAKDLKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQ 168
>gi|161899381|ref|XP_001712917.1| sigma 2 transcription factor [Bigelowiella natans]
gi|75756411|gb|ABA27305.1| sigma 2 transcription factor [Bigelowiella natans]
Length = 389
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 228 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCK 287
T+ E + ++DLL+ E L L + G PT + E++ RL G + K
Sbjct: 92 TSTNESIIMEWVKDLLRWEDLFLKLENKLGFYPTIDFFTKGIIDLTSEIKERLAIGKISK 151
Query: 288 DKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+ +I +++L+ISIAK Y G G++ +DL+
Sbjct: 152 EILIKRSLKLIISIAKRYNGCGLSFEDLI 180
>gi|33866043|ref|NP_897602.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639018|emb|CAE08024.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 308
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ L +Q ++ V++E C GGS +++ +++ + RR
Sbjct: 16 QLLTPEQELMLGRKVQAMV-------VITEPCQLAGGSGPSCEYSD----EEKAVIRR-- 62
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 -GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA AG+ +EL + + G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 156 RWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 209
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ G+P AA
Sbjct: 109 SDLFRQYLREIGRIP-LLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAA 160
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 161 DLD-----RLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 203
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 179 RWAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQ 232
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YL+A RLLTA++E++L+ ++ L E L ++ G E
Sbjct: 55 YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLDLPPAARGSRRPI------------E 101
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LRR + G KD ++ +N+RLV+SIAK Y G GM L D++Q
Sbjct: 102 LRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKGMALLDVIQ 143
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + E P+ + AA + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSSSQIKKRLRAGQR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|449018705|dbj|BAM82107.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 459
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 216 YLRATTSSSRLLTANEEM-QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
Y+R R+ ++EE+ +LS QD L R+ L G PT A+WAAA +
Sbjct: 109 YVREICKLDRI--SDEEVARLSRATQDYCALLKQRDELRNTLGREPTNAEWAAAVDAPEE 166
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 307
E+++R+ G +++++ +N+RLV++IA Y+
Sbjct: 167 EIQQRVERGRRARERLVAANLRLVLAIANRYKS 199
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 25/112 (22%)
Query: 228 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR--------- 278
TA++E + IQ +KL + L+ G P+ +WA AGV +L+
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 279 ----RLNY---------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L+ GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 206
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 27/125 (21%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RYLR T + A Q A L L ++E L+ G P+ +WA AGV
Sbjct: 89 RYLRLRT-----VLAGAAKQGDAVATPYLHLIEVQERLASELGHRPSLERWANTAGVQVS 143
Query: 275 ELR-------RRL---------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 312
+L+ RR + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 313 QDLVQ 317
DLVQ
Sbjct: 204 LDLVQ 208
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA + + EL++ L+ G +D+MI +N+RLV+++AK YQ GM L DLVQ
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQ 167
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 155 RWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 208
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKIKEFTT--- 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|425443241|ref|ZP_18823466.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
gi|389715506|emb|CCI00140.1| putative RNA polymerase sigma-C factor (fragment) [Microcystis
aeruginosa PCC 9717]
Length = 135
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA AG++ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 39 RWAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQ 92
>gi|148240837|ref|YP_001226224.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849376|emb|CAK24927.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + Y ++ LLTA EE++L+ +Q + +L + E G T Q
Sbjct: 49 TDSIGYYLSSIGRVPLLTAAEEIELAHHVQAMKELLDVPE-------GERTPRQ------ 95
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
R R+ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 96 ------RHRIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 22/96 (22%)
Query: 244 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----------------------N 281
+L ++E L+ G P+ +WA +AG++ EL+ L +
Sbjct: 110 QLMAVQERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQS 169
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ MI +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 170 EGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQ 205
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT ++ + L+ I+ L R L G P +WA A + EL R L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ ++ +N+RLV+S+AK + G+++QDL+Q
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 364
>gi|224110206|ref|XP_002333134.1| predicted protein [Populus trichocarpa]
gi|222834948|gb|EEE73397.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+LT++E + L +Q + L ++E L E GG PT + A A +D ++R+++ G
Sbjct: 216 VLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRA 275
Query: 286 CKDKMITSNIRLVISIAKNY---QGAGMNLQDLVQ 317
++K+I N+RLV+ + K Y G QD Q
Sbjct: 276 ARNKLIKHNLRLVLFVIKKYFQDFANGTKFQDFCQ 310
>gi|254526617|ref|ZP_05138669.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538041|gb|EEE40494.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLT EE++L+ +Q++ KL + E +ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TERT-------------- 92
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
QR L + + G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|157414303|ref|YP_001485169.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388878|gb|ABV51583.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLT EE++L+ +Q++ KL + E +ER
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TERT-------------- 92
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
QR L + + G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|88809396|ref|ZP_01124904.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786615|gb|EAR17774.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 339
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + Y +T LLTA EE++L+ +Q + +L + E
Sbjct: 49 TDSIGYYLSTIGRVPLLTAAEEIELAHHVQAMKELLDVPE-------------------- 88
Query: 271 VDQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
D+R R R+ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 89 -DERTPRQRHRIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLTA EE++L+ I+ L E + L E+ AAG++ E
Sbjct: 76 YLREIGKVP-LLTAEEEVELAKAIEAGLFAE---DKLCEK-----------KAAGIECPE 120
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L + GI K ++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 121 LEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQ 162
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN----------------- 281
IQ L+++ + + L G P++ +WA AA + EL+ L
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 282 -----YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
GI K++MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQ 209
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQ 196
>gi|33867026|ref|NP_898585.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639627|emb|CAE09011.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 328
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 21/112 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCGGSPTFAQWAAAA 269
+D + + ++ LLTA EE++L+ +Q++ +L+ L E L+ R
Sbjct: 38 TDSIGFYLSSIGRIPLLTAAEEIELAHHVQEMKQLQELPEEELTSRH------------- 84
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 85 -------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 129
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ GG+P A
Sbjct: 143 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL- 193
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 194 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 236
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 23/112 (20%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQW 265
SDP+R YL+A RLLTA EE+ L+ I+ L KL +R SP
Sbjct: 101 SDPVRMYLKAI-GRVRLLTAEEEVDLAKRIEAGLFASEKLAAIRRT-------SPRL--- 149
Query: 266 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R+L G + K K++ +N+RLV+SIAK Y G GM L DL+Q
Sbjct: 150 -------RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQ 194
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%)
Query: 223 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 282
S +L E ++LS I+ L E + L ER G P+ Q A + + + +L+ +L
Sbjct: 203 SDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRADLQSKLIQ 262
Query: 283 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L ++K+ SN+RLV+SIA+ Y G + DLVQ
Sbjct: 263 CSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQ 297
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL N+ + L+ I+ L R L ++ G P +WA + + EL R L
Sbjct: 265 LLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRNLLRAQR 324
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ ++ +N+RLV+S+AK + G+++QDL+Q
Sbjct: 325 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQ 356
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 125 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQ 177
>gi|297566693|ref|YP_003685665.1| RpoD subfamily RNA polymerase sigma-70 subunit [Meiothermus
silvanus DSM 9946]
gi|296851142|gb|ADH64157.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus
silvanus DSM 9946]
Length = 483
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 30/145 (20%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL------------LKLEGLRE 250
P V SDP+R LLT EE+ L+ ++D L+ + +R+
Sbjct: 130 PLTTRVSTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEDGVASAQFLAQETGLETDLIRQ 189
Query: 251 VLSERCGGSPTFAQWAAA---------AGVDQR------ELRRRLNY---GILCKDKMIT 292
VL + G Q VD R E++R L+ G L + +I
Sbjct: 190 VLRAQVQGGARIHQVPGMEVKLDPETITAVDSRLRALPREVKRHLHIARDGELARQHLIE 249
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
+N+RLV+SIAK Y G G++ DL+Q
Sbjct: 250 ANLRLVVSIAKKYTGRGLSFLDLIQ 274
>gi|379707440|ref|YP_005262645.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
gi|374844939|emb|CCF62003.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
Length = 319
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 25/134 (18%)
Query: 190 MSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLK 244
M+ + R P++ V DP+R YLRA + LL+A EE+ L+ AG+
Sbjct: 1 MTTRCLPARRTASPTLGTVS-DDPIRDYLRAIGRTP-LLSAEEEVALAERIAAGVL---- 54
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 304
R+ L E GG P ++R LRR + G K+ MI +N+RLV+SIA+
Sbjct: 55 ---ARQRLDE-AGGLPP---------AERRALRRTVADGARAKEHMIQANLRLVVSIARR 101
Query: 305 Y-QGAGMNLQDLVQ 317
Y GM+L DLVQ
Sbjct: 102 YPTNTGMSLLDLVQ 115
>gi|78214165|ref|YP_382944.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78198624|gb|ABB36389.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 328
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 23/124 (18%)
Query: 201 KRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCG 257
+RPS ++ +D + + ++ LLTA EE++L+ +Q + +L+ L E L+ R
Sbjct: 26 RRPSTRQGGRLATDSIGFYLSSIGRIPLLTAAEEIELAHHVQAMKQLQELPEEELTSRH- 84
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 85 -------------------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 125
Query: 318 LQAL 321
A+
Sbjct: 126 EGAI 129
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + + LLT EE++L +Q ++ VL+E + ++
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMM-------VLTEDGQLNEKTKEFTPQD- 68
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKINEFTT--- 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|317969130|ref|ZP_07970520.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CB0205]
Length = 309
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ + +T LLT EE++L +Q +++L E G + T +
Sbjct: 18 DPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLA------EEDKGEAYTTHE------- 64
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ + G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 65 -----KKIMRVGKRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ + T + EE++LS IQ L ++ R+ ++ G P+ A A +
Sbjct: 50 DPVDHYLNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQI 109
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LR R+ G + K+I +N+RLV+S+AK Y G+ DL+Q
Sbjct: 110 SVSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQ 155
>gi|33240031|ref|NP_874973.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33237557|gb|AAP99625.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 310
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT EE+ + +Q ++ L ERC A A V RR + G
Sbjct: 16 LLTPEEELTMGRKVQAMVGL-------IERC----HRAGDQGADCVYTEAERRTIKIGEK 64
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 65 AKNHMITANLRLVVNLAKKYQGKGLDLLDLIQ 96
>gi|116071837|ref|ZP_01469105.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065460|gb|EAU71218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 284
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 21/93 (22%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGL-REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LLTA EE++L+ +QD+ +L+ L +E L+ R + ++ G
Sbjct: 9 LLTAAEEIELAHHVQDMKQLKELPQEELTSRQ--------------------KHKIRMGK 48
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 49 RARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 81
>gi|260436326|ref|ZP_05790296.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260414200|gb|EEX07496.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 308
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 23/120 (19%)
Query: 201 KRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL-REVLSERCG 257
+RPS ++ +D + + ++ LLTA EE++L+ +Q + +L+ L E L+ R
Sbjct: 6 RRPSTRQGGRLATDSIGFYLSSIGRIPLLTAAEEIELAHHVQAMKQLQELPEEELTSRH- 64
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 65 -------------------RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 105
>gi|443323548|ref|ZP_21052553.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442786728|gb|ELR96456.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 381
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 43/135 (31%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLR---------------------EVLSERCGGSPTFAQ 264
LL+ EE+ L+ IQ L+L LR + L+ + G P+
Sbjct: 42 LLSKEEEVVLAQKIQRYLQLLELRAQACQQLDPVMAEFARLITVHDHLAAQLGHRPSLKT 101
Query: 265 WAAAAGVDQRELRRRLNYGILC----------------------KDKMITSNIRLVISIA 302
WA ++ EL++ L G LC K+ ++ +N+RLV+SIA
Sbjct: 102 WAKTGNLEITELKQILTTGKLCWAQIAKLELKELEMIQKAGIEAKNTLLAANLRLVVSIA 161
Query: 303 KNYQGAGMNLQDLVQ 317
K YQ G+ L DL+Q
Sbjct: 162 KKYQNRGLELLDLIQ 176
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 162 WAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQ 214
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 18/107 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + ++ LLT EE++L +Q ++ T + A
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RE ++ + G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|78779769|ref|YP_397881.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713268|gb|ABB50445.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 313
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKIKEFTT--- 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ----QQKRIIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|254432880|ref|ZP_05046583.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
gi|197627333|gb|EDY39892.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
Length = 331
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+ + A+ LLT EE++L +Q +++L P+++
Sbjct: 41 DPISWYLASIGREPLLTPAEEIELGNQVQAMMQL---------LEAAKPSYSDHE----- 86
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ L G K +M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 87 -----KKLLRIGKRSKQRMMKANLRLVVSVAKKYQGKGLELLDLIQ 127
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 260 PTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
PT A +WA A + EL + G+ K MI +N+RLV+S+AK YQ G+ L DL
Sbjct: 142 PTLANGKRRWAEIANLTVEELEQVQTQGLQAKSHMIKANLRLVVSVAKKYQNRGLELLDL 201
Query: 316 VQ 317
VQ
Sbjct: 202 VQ 203
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 204 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
V+ + DP+R YLR + LLTA EE+ L+ ++ G E SER
Sbjct: 96 DVESMGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQVE-----RG--EQASERL------ 141
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
Q A ++ +L R + G ++++I +N+RLV+SIAK Y G GM+L DL+Q
Sbjct: 142 -QKGDYAPSERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQ 195
>gi|159903122|ref|YP_001550466.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159888298|gb|ABX08512.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 312
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR + G K++MITSN+RLV+++AK YQG G++L DL+Q
Sbjct: 56 RRTIRQGERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQ 96
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA G+ +EL L G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 137 RWAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKVNEFTTQQ- 68
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|33241312|ref|NP_876254.1| DNA-directed RNA polymerase sigma subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238842|gb|AAQ00907.1| DNA-directed RNA polymerase sigma subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 339
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + + ++ LLT EE++L+ +Q K++GL ++ E
Sbjct: 49 TDSIGFYLSSIGRVPLLTPAEEIELAHHVQ---KMKGLLDIPKE---------------N 90
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
++ R+ R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 91 INTRQ-RHQIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLT +E+ +Q + L + L E S + A WA A + + EL + L G
Sbjct: 29 LLTHEQEVLYGKQVQQMKMLLARKVELEEINPTSISQADWAQAVELTESELEQALVQGQR 88
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+KMI +N+RLV+S+AK Y M L DL+Q
Sbjct: 89 AKNKMIQANLRLVVSVAKQYLRRNMELLDLIQ 120
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E L E G P+ + + + +++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRAGQR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|1769598|gb|AAB39998.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WA G+ +EL L G K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 137 RWAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 190
>gi|224002653|ref|XP_002290998.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972774|gb|EED91105.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 345
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGIL 285
++ EE +L A Q+ ++L+ + E L + G PT +W AAAG ++ L + L GI
Sbjct: 25 VSPKEEKELGAKTQEAMRLQKMYEDLQSKHGREPTDDEWCAAAGKINMEALEQVLEEGIE 84
Query: 286 CKDKMITSNIRLVISIA----KNYQGAGMNLQDLVQ 317
K++++ SN+R+V + +N G+ N DL+Q
Sbjct: 85 AKNQLVASNLRMVQRVVNLYIRNGLGSEYNAGDLMQ 120
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 202 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 260
RPS + ++ D + + LL +EE++L+ ++ +E +RE+ +
Sbjct: 54 RPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVR---FIEEVREL---QASLQA 107
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQA 320
T Q AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+Q A
Sbjct: 108 TKGQVAAELDMTEKQLESRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 167
Query: 321 L 321
+
Sbjct: 168 M 168
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
D +R YLR LLT EE++L+ Q L E ++E +
Sbjct: 14 GDSIRMYLRDIGKVD-LLTPAEEVELAKKYQTGLAAEAALAQMNE------------GSV 60
Query: 270 GVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
VD+RE R+ L G KDK++ +N+RLV+SIAK Y+G G+ L DLVQ
Sbjct: 61 EVDRRECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRGLPLLDLVQ 111
>gi|423348933|ref|ZP_17326589.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
gi|393703162|gb|EJD65363.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
Length = 593
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 290 SDPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHL---LDTSPAEDLTFQR------ 340
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+RELR N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 341 --RRELRWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 385
>gi|123966683|ref|YP_001011764.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201049|gb|ABM72657.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 313
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+ + + LLT EE++L +Q ++ L ++ + +P
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMTLTEDGQLNEKTKEFTP---------- 66
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ----QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 13/107 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ GL +E+ GG + A
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIE-----AGL--FAAEKLGGG---RRLTVALR 143
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 144 VDLEAVARD---GDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|270283843|ref|ZP_05965086.2| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
gi|270277549|gb|EFA23403.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
Length = 485
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + SE +FA+
Sbjct: 184 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----SFAR----- 233
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 234 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 278
>gi|126696812|ref|YP_001091698.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126543855|gb|ABO18097.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 313
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 18/109 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 268
+DP+ + LLT EE++L +Q ++ L +G L+E+ T
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMMILTEDG---QLNEKTNEFTT------- 66
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQ
Sbjct: 67 ------QQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQ 109
>gi|315226631|ref|ZP_07868419.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120763|gb|EFT83895.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 690
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 387 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 437
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 438 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 482
>gi|78184480|ref|YP_376915.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78168774|gb|ABB25871.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 309
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ L +Q ++ ++E C GG+ ++ +QR + RR
Sbjct: 17 QLLTPEQELMLGRKVQAMV-------AITEPCLIAGGTGPSCEYND----NQRFVIRR-- 63
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 64 -GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 98
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 21/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E ER G A+
Sbjct: 88 SDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------ERLG---------TAS 130
Query: 270 GVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D R +L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 131 GLDTRLALDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 181
>gi|78780175|ref|YP_398287.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|123969439|ref|YP_001010297.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|126697226|ref|YP_001092112.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|78713674|gb|ABB50851.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
gi|123199549|gb|ABM71190.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
gi|126544269|gb|ABO18511.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 339
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLT EE++L+ +Q++ KL + E ++R
Sbjct: 49 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TDRT-------------- 92
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
QR L + + G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 93 --QRNLYQ-IKIGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 140
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR + LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIT-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 205 VQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 263
V + DP+R YLR + LLTA EE+ L+ + ER +
Sbjct: 101 VDGIGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQV--------------ERGEQANERL 145
Query: 264 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
Q V++ +L R + G ++++I +N+RLV+SIAK Y G GM+L DL+Q
Sbjct: 146 QNGDYTPVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQ 199
>gi|91070600|gb|ABE11500.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[uncultured Prochlorococcus marinus clone HOT0M-8F9]
Length = 340
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SD + Y ++ LLT EE++L+ +Q++ KL + E ++R
Sbjct: 50 SDSIGYYLSSIGRVPLLTPAEEIELAHHVQNMKKLLQIPE--TDRT-------------- 93
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
QR L + + G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 94 --QRNLYQ-IKIGKKSRDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 141
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 204 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE--RCGGSPT 261
S V+ DP+R LLTA EE+ L+ ++ LK + E+L E R G
Sbjct: 295 STDAVNIDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSE 354
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A + + L+ G K K+ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 355 EDMMNLEAQI--KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 408
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 27/116 (23%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ + +LE A
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEK------------------A 146
Query: 267 AAAGVD-QRELRRRLN----YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G++ +R +RRL GI K ++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 147 EDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 202
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 233
+AAE A N+ V + S+ R+R + V DP+R LLTA EE M
Sbjct: 55 KAAEDAEVNLPKVTTRSSKVRRRSADTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 114
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++ AG+ +LE E E G+D K ++I +
Sbjct: 115 KIEAGVAATAELEKAEEEGIELERRERRRLTRVEQVGID-------------AKQQLIEA 161
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
N+RLV+SIAK Y G GM DL+Q
Sbjct: 162 NLRLVVSIAKRYVGRGMLFLDLIQ 185
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 17/112 (15%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAA 268
+D LR YLR RLLTA EE++L+ I+ L E L V P A+ A
Sbjct: 84 ADLLRQYLR-EIGRVRLLTAVEEVELARAIEAGLFAEEALDRV--------PPAAERRPA 134
Query: 269 AGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D+R +L R + G + K ++I +N+RLV+S+AK Y G G+ L DL+Q
Sbjct: 135 ---DERLLGDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQ 183
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + E G P+ + ++ + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSIPIIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
gi|21466014|pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 258
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 61
Query: 259 SPTFAQWAAAAGVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
+ + +EL+R L+ G + +I +N+RLV+SIAK Y G G++ DL
Sbjct: 62 TARVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDL 121
Query: 316 VQ 317
+Q
Sbjct: 122 IQ 123
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E E G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQR 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 140
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ L+ I++ E ++ L E P
Sbjct: 143 NDPVRQYLHEIGRVSLLTLEEEISLARRIEEG---EAAQKRLDEEGDSLPE--------- 190
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+QR L+R + G + + +I +N+RLV+SIAK Y G G++ DL+Q
Sbjct: 191 REQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQ 237
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 239 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 280
IQ + L + + L+ + G P +WA AGV +L+ L
Sbjct: 147 IQQYVHLIDIHDRLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGEL 206
Query: 281 ----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ K+ MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 207 DQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQ 247
>gi|87124019|ref|ZP_01079869.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86168588|gb|EAQ69845.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 308
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ + +Q ++ +++RC GG ++ D++ + +R
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------AITDRCMLAGGEGPACDYSE----DEKRVIKR-- 62
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++MIT+N+RLV+++AK YQG G++L DL+Q
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQ 97
>gi|332298226|ref|YP_004440148.1| RpoD subfamily RNA polymerase sigma-70 subunit [Treponema
brennaborense DSM 12168]
gi|332181329|gb|AEE17017.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Treponema
brennaborense DSM 12168]
Length = 332
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLL-KLEGLREVLSERCGGSPTFAQWAAAAG 270
DPL S +LL+ EE +A IQ+ ++ L+ L E SP + +
Sbjct: 32 DPLSLYLKQISRYKLLSVQEEQATAAAIQEHKSRIRQLKSGLLEPAENSPAYEE------ 85
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+D+ L R L ++ K+KMI +N+RLV+SIAK YQ G+ L DL+
Sbjct: 86 IDR--LERDL---LVLKNKMIQANLRLVVSIAKRYQHRGLGLLDLI 126
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSP 260
P + ++ + DP+R LLTA +E++L+ ++ D+ + RE +
Sbjct: 84 PDLTDIAFDDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYT------- 136
Query: 261 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+G ++ EL R G + +I +N+RLV+SIAK Y G+ + DLVQ
Sbjct: 137 --------SGRERMELERAYALGCESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQ 185
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLE-GLREVLSERCGGSPTFAQWAAAA 269
DP+R LLT +EE+ L+ + + E L+E+ +R G P A A
Sbjct: 170 DDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQREAGDPAAATKEEEA 229
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L++ L+ G K K+ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 230 -----ALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 272
>gi|87303841|ref|ZP_01086550.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87281651|gb|EAQ73647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 215
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 22 RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQ 62
>gi|113954631|ref|YP_732094.1| RNA polymerase sigma factor [Synechococcus sp. CC9311]
gi|113881982|gb|ABI46940.1| RNA polymerase sigma factor [Synechococcus sp. CC9311]
Length = 340
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 19/96 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ +Q + +L ++E ER +P + R R+ G
Sbjct: 65 LLTAAEEIELAHHVQAMKELLDIQE--EER---TP--------------KQRHRIRMGKR 105
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 106 ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 141
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 19/97 (19%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LLTA EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 159 LLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSP--------------QMRRDLNWIV 204
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 205 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 241
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 22/80 (27%)
Query: 260 PTFAQWAAAAGVDQRELRRRLN--YGIL--------C------------KDKMITSNIRL 297
PT +WA AAG+ EL+ LN YG C +D+MI +N+RL
Sbjct: 88 PTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARDRMIAANLRL 147
Query: 298 VISIAKNYQGAGMNLQDLVQ 317
V+++AK YQ G+ L DLVQ
Sbjct: 148 VVTVAKKYQQRGLELLDLVQ 167
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|159470255|ref|XP_001693275.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
gi|42742499|gb|AAM88387.2|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
gi|47076042|emb|CAF25319.1| sigma-like transcription factor [Chlamydomonas reinhardtii]
gi|158277533|gb|EDP03301.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
Length = 752
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L +E +++A +D L LE ++ + T + AAA +D L+ R + G+
Sbjct: 431 LDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKA 490
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
K+ ++ SN +LV+++ K++ G G ++QDLV
Sbjct: 491 KELLLKSNYKLVMTVCKSFVGKGPHIQDLV 520
>gi|449464016|ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L+ EE +L +++ + LE ++ + E PT Q A A G + R ILC
Sbjct: 140 LSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDR-----ILC 194
Query: 287 K-----DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ D++I +LVISIA YQG G++LQDL Q
Sbjct: 195 RARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQ 230
>gi|374850850|dbj|BAL53828.1| RNA polymerase primary sigma factor RpoS [uncultured planctomycete]
Length = 278
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+++EL RR+ G +D+MI +N+RLV++IA+NY G G++LQDL++
Sbjct: 33 EEKELARRIAQGDSEARDRMIRANLRLVVNIARNYTGKGLSLQDLIE 79
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R LLTA+EE+ L+ I+ G T AA G
Sbjct: 149 GDPVRMYLKEIGKVDLLTASEEVHLAMKIE---------------AGTEATERLEAADRG 193
Query: 271 ------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+QR L R G+ K +I++N+RL +SIAK Y G GM DL+Q
Sbjct: 194 EIELTRAEQRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQ 246
>gi|313140538|ref|ZP_07802731.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
gi|313133048|gb|EFR50665.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
Length = 500
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 20/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 293
>gi|310287737|ref|YP_003938995.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
gi|309251673|gb|ADO53421.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
Length = 506
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 20/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 299
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P G+ R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GIHHRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|421733382|ref|ZP_16172488.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
gi|407078624|gb|EKE51424.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
Length = 506
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 20/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 299
>gi|311064624|ref|YP_003971349.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|421736043|ref|ZP_16174897.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
gi|310866943|gb|ADP36312.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|407296670|gb|EKF16198.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
Length = 506
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 20/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 299
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 180 RAAEKAAANVMSVKSGSTSRRKR-PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 238
+ A++ M +K KR +Q++D D + L+ +L EE S G
Sbjct: 234 KIADELKELYMKLKRKEKDLNKRIKRLQKID-PDVEKLLKGDYDDPEILKKIEENGFSFG 292
Query: 239 IQDLLKLEGLR-----EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 293
++L+ E L+ E L E G PT ++ + Q E R+ +N K K++ S
Sbjct: 293 RFEILRTETLKLQEEIEELKEMIGTVPT--EFDHVINIIQ-EGRKEVNE---TKQKIVQS 346
Query: 294 NIRLVISIAKNYQGAGMNLQDLVQ 317
N+RLV+SIAK Y G+ DL+Q
Sbjct: 347 NLRLVVSIAKKYTNRGLQFLDLIQ 370
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 22/88 (25%)
Query: 252 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCKDK 289
L+ + G P+ +WA+ AG+ EL+ RL G K+
Sbjct: 127 LTAQLGHRPSPERWASTAGIALAELKPRLAAGKQRWAELAQMTVAEIDALQLAGTRAKEH 186
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQ 317
MI +N+RLV+S+AK YQ G+ L DL+Q
Sbjct: 187 MIKANLRLVVSVAKKYQNRGLELLDLIQ 214
>gi|206889845|ref|YP_002248858.1| RNA polymerase sigma 70 factor [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741783|gb|ACI20840.1| RNA polymerase sigma 70 factor [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 427
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+++ N K+KMI SN++LV+SIAK Y G G+NL+DL+Q
Sbjct: 179 IKKIFNEFTEAKNKMIESNLKLVVSIAKKYTGRGLNLEDLIQ 220
>gi|67925817|ref|ZP_00519113.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
gi|67852341|gb|EAM47804.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Crocosphaera
watsonii WH 8501]
Length = 386
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
G+ REL+ L G K+KMI +N+RLV++++K YQG G+ DLV
Sbjct: 7 GISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLV 53
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 19/120 (15%)
Query: 203 PSVQEVDYSDP-----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
P+V V+ P +YLR LLTA EE++L+ ++ L E E+ G
Sbjct: 63 PAVARVESGGPSADLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLG 114
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P A ++L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 TTPDLDSELA------QDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 168
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 96 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG- 146
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 147 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 189
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL+ +E+ L +Q+ +++E + E P+ + A + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQR 97
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++M+ +N+RLV+S+AK Y M L DL+Q
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 129
>gi|87123382|ref|ZP_01079233.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86169102|gb|EAQ70358.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 293
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 19/107 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + Y ++ LLTA EE++L+ +Q + +L L E +ER +P
Sbjct: 3 TDSIGYYLSSIGRVPLLTAAEEIELAHHVQAMKQLLELPE--AER---TP---------- 47
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 48 ----RQRHQIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 90
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + AAA
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAAATR 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 100 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 147
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 148 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 179
>gi|408500874|ref|YP_006864793.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
gi|408465698|gb|AFU71227.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
Length = 474
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEGLREVLSERCGGSPTFA 263
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEG---------------- 215
Query: 264 QWAAAAGVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 216 -----EGMDFKRRRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 267
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 151 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 198
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 199 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 230
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG- 114
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 157
>gi|219112653|ref|XP_002178078.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410963|gb|EEC50892.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 358
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 231 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGILCKDK 289
+E++L Q+ ++L+ L L+ R PT +W A AG ++ +R+ + G+ K++
Sbjct: 44 QEIELGEKTQEAIRLQRLYNTLTSRLDREPTDEEWCAEAGKINMEAIRQTIEEGLEAKNQ 103
Query: 290 MITSNIRLVISIAKNYQGAGMNLQ----DLVQ 317
++TSN+R+V S+ Y G+ Q D++Q
Sbjct: 104 LVTSNLRMVQSVVNTYIRNGLTAQYNAGDMMQ 135
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 140 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 183
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 184 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 237
>gi|390937151|ref|YP_006394710.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
gi|389890764|gb|AFL04831.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
Length = 500
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 20/111 (18%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 270 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 293
>gi|148242708|ref|YP_001227865.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851018|emb|CAK28512.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 301
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R L G K++MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 50 KRALRLGERAKNQMITANLRLVVNLAKRYQGKGLELLDLIQ 90
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ G +P A
Sbjct: 131 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL- 181
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 182 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 224
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 143 GDPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEA 186
Query: 267 AAAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 187 GEIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 240
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 33/149 (22%)
Query: 184 KAAANV----MSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 233
KA +V +S KS S RKR + + DP+R LLTA EE M
Sbjct: 82 KATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 141
Query: 234 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLN----YGILCKD 288
++ AG+ +LE A G++ +R +RRL GI K
Sbjct: 142 KIEAGVAATEELEK------------------AEDEGIELERREKRRLGRIEQVGIDAKQ 183
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 184 QLIEANLRLVVSIAKRYVGRGMLFLDLIQ 212
>gi|242089037|ref|XP_002440351.1| hypothetical protein SORBIDRAFT_09g030110 [Sorghum bicolor]
gi|241945636|gb|EES18781.1| hypothetical protein SORBIDRAFT_09g030110 [Sorghum bicolor]
Length = 501
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
+LT+++ +L +Q + + ++E L E PT A+ A A G+ +LRRRL+ G
Sbjct: 203 VLTSSQSARLFKTMQPMKAIFEVQESLREELQRDPTDAELAEATGMTVHQLRRRLDVGRA 262
Query: 286 CKDKMITSNIRLV-ISIAKNYQGAGMN--LQDLVQ 317
++K+I N+RLV +I K Y G + DL Q
Sbjct: 263 ARNKLIKHNLRLVPYAINKYYPDMGTDERFDDLCQ 297
>gi|308205773|gb|ADO19206.1| RNA polymerase sigma factor [Nostoc flagelliforme str. Sunitezuoqi]
Length = 124
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
+L +E + +L +R SP ++ +A + EL + L G L K MIT+N+RLV+++
Sbjct: 1 MLAIEQQKNLLVQRLKRSPNGSELSAQVNKTEAELTQILEQGQLAKHLMITANLRLVVAV 60
Query: 302 AKNYQGAGMNLQDLVQ 317
AK Y+ + + DL+Q
Sbjct: 61 AKKYRWSNLEFLDLIQ 76
>gi|374849564|dbj|BAL52576.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 334
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RY R RLLT EE++ S + R G + A+ AG D
Sbjct: 47 RYFR-EVGGHRLLTHQEEIEYSRAV---------------RAGLA---AKKRIEAGEDTP 87
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELR + G+ ++K+I N+RLV+SIAK Y+ + + L DL+Q
Sbjct: 88 ELRELVRKGMEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQ 130
>gi|219124053|ref|XP_002182327.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406288|gb|EEC46228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 317
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 52/107 (48%), Gaps = 16/107 (14%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGG---SPTFAQWAAAAGVDQRELRRRLNYG 283
LT EE Q S I+ L LRE L G PT +WAAA GV ELRR L+ G
Sbjct: 1 LTKEEEAQYSFQIRTLSAALALREQLVTLQDGMHVHPTHQEWAAACGVSAVELRRVLDEG 60
Query: 284 ILCKDKMITSNIRLVISIAKNY-----------QGAG--MNLQDLVQ 317
+ ++ +N+ LV ++AK +G G + LQDL+Q
Sbjct: 61 QQARAALVAANLGLVTALAKRQLSTLQTATEAGRGVGTILTLQDLIQ 107
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE+ L+ ++ L E E+ GG+ A + VD L R + G +
Sbjct: 109 LLTAAEEVDLARRVEAGLFAE-------EKLGGA---ADLDSQLAVD---LDRLVVMGRM 155
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I SN+RLV+S+AK Y G G+ + DLVQ
Sbjct: 156 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 187
>gi|352095763|ref|ZP_08956777.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678905|gb|EHA62050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 353
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 19/96 (19%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ +Q + +L ++E +R +P + R R+ G
Sbjct: 78 LLTAAEEIELAHHVQAMKELLDIQE--EDR---TP--------------KQRHRIRMGKR 118
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 119 ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 154
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
+D D + S LLTA EE++L+ I+ + RE L+ R SP Q
Sbjct: 107 IDTDDTIGLYLKEVSRVPLLTAEEEVELAQRIE---RGRMAREELA-RGNVSPKRRQ--- 159
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELRR + G ++ +IT+N RLVIS+AK Y G G+ DL+Q
Sbjct: 160 -------ELRRLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQ 202
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 137 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQ 191
>gi|449525642|ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L+ EE +L +++ + LE ++ + E PT Q A A G + R ILC
Sbjct: 45 LSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAIAMGTKSGCIDR-----ILC 99
Query: 287 K-----DKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ D++I +LVISIA YQG G++LQDL Q
Sbjct: 100 RARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQ 135
>gi|383791048|ref|YP_005475622.1| sigma-70 family RNA polymerase sigma factor [Spirochaeta africana
DSM 8902]
gi|383107582|gb|AFG37915.1| RNA polymerase sigma factor, sigma-70 family [Spirochaeta africana
DSM 8902]
Length = 314
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE---RCGGSPTFAQWAA 267
SD L + +LLT +E+++ I +L + L V SE G + + Q ++
Sbjct: 12 SDSLSLYLKQIAKYKLLTVEQELEIGRRIVELR--DELERVTSEYQVHGGDAHDYMQRSS 69
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+RELR + K +MI +N+RLV+SIAK YQ G+NL DL+
Sbjct: 70 TV---ERELREQ-------KSRMINANLRLVVSIAKKYQHRGLNLLDLI 108
>gi|294786990|ref|ZP_06752244.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
gi|294485823|gb|EFG33457.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
Length = 403
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 100 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 150
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 151 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 195
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 39/159 (24%)
Query: 179 TRAAEKAAANVMSVKSGSTSR----RKRPSVQEVDYS------DPLRYLRATTSSSRLLT 228
+ A+ A A + S K SR R R + +D S DP+R LLT
Sbjct: 97 VKVAKMADAEMASEKPKKKSRVRTARSRNRARGIDASTVMLTGDPVRMYLKEIGKVDLLT 156
Query: 229 ANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRR 278
A +E M++ AG++ KLE AA AG + R L R
Sbjct: 157 AADEVDLAMKIEAGLEASNKLE-------------------AADAGEIELTRAEMRRLTR 197
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ K +I++N+RLV+SIAK Y G GM DL+Q
Sbjct: 198 VEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQ 236
>gi|212715646|ref|ZP_03323774.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661013|gb|EEB21588.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 448
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 147 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQM----DFKR----- 196
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 197 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 241
>gi|397629977|gb|EJK69584.1| hypothetical protein THAOC_09141 [Thalassiosira oceanica]
Length = 657
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGIL 285
+T +E +L Q+ ++L+ L + L + G PT +W AAAG ++ L+ + G+
Sbjct: 337 VTPKQERELGTKTQEAMRLQKLHDELKIKYGRRPTDDEWCAAAGKINVFALKEAMQVGLE 396
Query: 286 CKDKMITSNIRLVISIA----KNYQGAGMNLQDLVQ 317
K++++ SN+R+V + +N G+ N DL+Q
Sbjct: 397 AKNQLVASNLRMVQRVVNMYIRNGLGSEYNAADLLQ 432
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-------DLLKLEGLREVLSER 255
P + ++ DP+R LLTA EE+ L+ ++ LL+ +G+ E
Sbjct: 78 PDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQDDGMLE----- 132
Query: 256 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 315
D+ L+R ++ G + +I +N+RLV+SIAK Y G+ + DL
Sbjct: 133 --------------HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDL 178
Query: 316 VQ 317
VQ
Sbjct: 179 VQ 180
>gi|379736727|ref|YP_005330233.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
gi|378784534|emb|CCG04203.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
Length = 328
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 25/124 (20%)
Query: 200 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 259
R+ P + +D +R T + LLTA +E++L+ I+ L E L L+E+ G +
Sbjct: 18 RREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELAKRIEAGLYAERL---LAEQQGLT 74
Query: 260 PTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQ 313
P R+ +Y L D ++ +N+RLV+S+AK Y G GM
Sbjct: 75 PA----------------RKRDYKTLATDGKAAKAHLLEANLRLVVSVAKRYTGHGMTFL 118
Query: 314 DLVQ 317
DL+Q
Sbjct: 119 DLIQ 122
>gi|307700837|ref|ZP_07637862.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
gi|307613832|gb|EFN93076.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
Length = 614
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
REL + G+ K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 408
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R+ I+ K+K+I +N+RLV+SIAK Y G GM+ DLVQ
Sbjct: 182 KRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQ 222
>gi|390564968|ref|ZP_10245695.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
gi|390171779|emb|CCF85025.1| RNA polymerase sigma factor [Nitrolancetus hollandicus Lb]
Length = 329
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RY R RLLT EE++ S ++ L+ A+ +G D
Sbjct: 42 RYFR-DVGGHRLLTHGEEIEYSRAVRAGLE------------------ARKRVDSGEDSA 82
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELR L ++K+I N+RLV+SIAK Y+ +G+ L DL+Q
Sbjct: 83 ELRMILERAKAAREKLIRHNLRLVVSIAKKYRASGLPLIDLIQ 125
>gi|227875511|ref|ZP_03993651.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269977243|ref|ZP_06184216.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|306818820|ref|ZP_07452542.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
gi|227843847|gb|EEJ54016.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269934546|gb|EEZ91107.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|304648506|gb|EFM45809.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
Length = 614
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
REL + G+ K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 408
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
LRRR++ G ++ + T+N+RLV+S+AK Y G G++L DL+Q
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQ 194
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ +P + A
Sbjct: 86 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLTNTPDLSTRLAV- 136
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I SN+RLV+S+AK Y G G+ + DLVQ
Sbjct: 137 -----DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 179
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTF 262
V DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 139 VDSFGIDDPVRMYLKEIGKVNLLTPDEEIQLAQDMGAGDAAK-EQMEELEQARKNGEEVS 197
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 198 LTEEEEK-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 247
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|284991968|ref|YP_003410522.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284065213|gb|ADB76151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 327
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 198 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 257
S R+ P + +D +R T + LLTA +E++LS I+ L E L L+ER
Sbjct: 16 SSRREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELSKRIEAGLYAERL---LTERQL 72
Query: 258 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+P + A D G K ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 73 -TPALQRDYKALAAD----------GKAAKRHLLEANLRLVVSVAKRYTGHGMTFLDLIQ 121
>gi|320103352|ref|YP_004178943.1| RNA polymerase sigma-38 subunit RpoS [Isosphaera pallida ATCC
43644]
gi|319750634|gb|ADV62394.1| RNA polymerase, sigma 38 subunit, RpoS [Isosphaera pallida ATCC
43644]
Length = 287
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++REL RR++ G +D ++ +N+RLV+SIA+ Y G G+ L DL++
Sbjct: 33 EERELGRRVSEGDYFARDHLVKANLRLVVSIARGYNGKGLGLDDLIE 79
>gi|224124068|ref|XP_002319237.1| predicted protein [Populus trichocarpa]
gi|222857613|gb|EEE95160.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
Y++ S +L E ++LS I+ L LE + L ER G P+ Q A + + + +
Sbjct: 187 YVKGVVSDE-VLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPSDEQLADSLRISRAD 245
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L+ +L L ++K+ SN+RLV+SIA+ G + DLVQ
Sbjct: 246 LQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQ 287
>gi|159904372|ref|YP_001551716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889548|gb|ABX09762.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 338
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 25/114 (21%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ---DLLKLEGLREVLSERCGGSPTFAQWAA 267
+D + + ++ LLT EE++L+ +Q +LL +E +E LS R
Sbjct: 48 TDSIGFYLSSIGRVPLLTPAEEIELAHHVQKMKELLDIE--KEKLSARQ----------- 94
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 95 ---------RHQIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 139
>gi|154488794|ref|ZP_02029643.1| hypothetical protein BIFADO_02101 [Bifidobacterium adolescentis
L2-32]
gi|154082931|gb|EDN81976.1| RNA polymerase sigma factor RpoD [Bifidobacterium adolescentis
L2-32]
Length = 478
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 177 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 226
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 227 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 271
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 220
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 21/106 (19%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL + EE+QL+ +Q++L L +E L+ A V
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLE-KENLTA-----------AEKKIV 54
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+Q G + K KMI +N+RLV+SIAK YQ G++L DL+Q
Sbjct: 55 EQ---------GQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQ 91
>gi|119026029|ref|YP_909874.1| RNA polymerase sigma factor [Bifidobacterium adolescentis ATCC
15703]
gi|118765613|dbj|BAF39792.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
adolescentis ATCC 15703]
Length = 479
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 178 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 227
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 228 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 272
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 205 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTF 262
V DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 134 VDSFGIDDPVRMYLKEIGKVNLLTPDEEVQLAQDMGAGDAAK-EQMEELEQARKNGEEVS 192
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 193 ITEEEEK-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 242
>gi|302392313|ref|YP_003828133.1| RpoD subfamily RNA polymerase sigma-70 subunit [Acetohalobium
arabaticum DSM 5501]
gi|302204390|gb|ADL13068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Acetohalobium
arabaticum DSM 5501]
Length = 275
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KDK+I N+RLV+SIA +QG G++LQDLVQ
Sbjct: 36 AKDKLIRHNLRLVVSIANKHQGKGLDLQDLVQ 67
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
P + E+ + DP+R LLTA +E++L+ ++ + +R
Sbjct: 74 PDLGEIAFDDPVRMYLQEIGQVPLLTAEQEVELAKAME-------AGAIARQRLDRE--- 123
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++A+A ++ EL R + G + +I +N+RLV+SIAK Y G+ + DLVQ
Sbjct: 124 -EYASAR--ERFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQ 175
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQ 151
>gi|225351336|ref|ZP_03742359.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157680|gb|EEG70963.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 472
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQM----DFKR----- 220
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 221 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 265
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A A AG+ R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 97 LAGGCADAGL-ARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQ 151
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 203
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R+LR + G L K+ ++ +N+RLV+S+AK Y G GM L DL+Q
Sbjct: 130 RRDLRAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 174
>gi|229817449|ref|ZP_04447731.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785238|gb|EEP21352.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 482
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + G + F +
Sbjct: 181 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDT----EGDTMDFKR----- 230
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 231 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 275
>gi|21466021|pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
gi|11527292|gb|AAG36964.1|AF291720_1 sigma factor SigA [Thermus aquaticus]
Length = 438
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 255
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 90 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 149
Query: 256 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 297
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 150 ILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 209
Query: 298 VISIAKNYQGAGMNLQDLVQ 317
V+SIAK Y G G++ DL+Q
Sbjct: 210 VVSIAKKYTGRGLSFLDLIQ 229
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE+ L+ ++ L E E+ GG+ A + VD L R + G +
Sbjct: 33 LLTAAEEVDLARRVEAGLFAE-------EKLGGA---ADLDSQLAVD---LDRLVVMGRM 79
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I SN+RLV+S+AK Y G G+ + DLVQ
Sbjct: 80 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQ 111
>gi|297243591|ref|ZP_06927522.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|415709860|ref|ZP_11463439.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
gi|296888342|gb|EFH27083.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|388055862|gb|EIK78747.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
Length = 489
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 282
>gi|148243603|ref|YP_001228760.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851913|emb|CAK29407.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 323
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ +Q + +L SE T Q R+++ G
Sbjct: 48 LLTAAEEIELAHQVQQMKQL-------SEIPAEERTPKQ------------RQQVRMGCR 88
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 89 ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 120
>gi|298253932|ref|ZP_06977519.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
gi|297532075|gb|EFH71050.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
Length = 489
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 282
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 121 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 180
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 181 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 228
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 162 LLNAEEEVDLAKRIEAGLYGSERLRQVEEEGQKISP--------------QMRRDLNWIV 207
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 208 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 244
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 267
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 105 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 164
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 165 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQ 212
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 19/106 (17%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
DP+R LL + EE+QL+ +Q +L L L++ AAA
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKK------------DNLAAAE-- 52
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ + G K +MI +N+RLV+SIAK YQ G++L DL+Q
Sbjct: 53 -----QKIIEQGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQ 93
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 288 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 338
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 339 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 370
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 270 GVD-QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G D +R+L++ + G K +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 168 GTDLRRDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|420236839|ref|ZP_14741316.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
gi|391879942|gb|EIT88442.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
Length = 624
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEGLREVLSERCGGSPTFAQ 264
SDP++ LL A +E+ LS AG+ Q LL ++ +R G +
Sbjct: 321 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHLLDTTPADQMTFQRKRG----LK 376
Query: 265 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
WAA N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 377 WAA-------------NDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 416
>gi|374814085|ref|ZP_09717822.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-1]
Length = 352
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 175 KARRTRAAEKAAANVMSVKS-GSTSRRKRPSVQE-------VDYSDPLRYLRATTSSSRL 226
K + EK V + + G+ R + P +Q+ V SDPL S L
Sbjct: 7 KTGKIEKYEKKEGVVFHLTNEGNKKRMQNPGLQKMAKKSRPVKESDPLALYFKQISKFPL 66
Query: 227 LTANEEMQLSAGIQDLL-KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LT EE + I + K+ L ++ E+ + +++ LR
Sbjct: 67 LTVQEEQGIGEKIVTIRRKIHELEDIYDEKEKDD---VYRVERSNLEESLLRH------- 116
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
K+ MI SN+RLV+SIAKNYQ G++L DL+
Sbjct: 117 -KNHMINSNLRLVVSIAKNYQHRGLSLLDLI 146
>gi|50955189|ref|YP_062477.1| ECF subfamily RNA polymerase sigma-70 factor [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951671|gb|AAT89372.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 308
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R + + LLTA +E+ L+ I+ + L G E L+ R G SP
Sbjct: 13 NDPVRDYLNSIGRTWLLTAEDEVSLAKRIE-VGVLAG--ERLATRPGLSPR--------- 60
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++REL + G ++ I +N+RLV+SIAK Y G G+ + DL+Q
Sbjct: 61 -EKRELHVLSDDGKRAFERFIEANLRLVVSIAKRYAGRGLAVMDLIQ 106
>gi|283783165|ref|YP_003373919.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
gi|283441732|gb|ADB14198.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
Length = 489
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 282
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWA 266
+ +DP+R LL+A+EE++ + I+ L+ E ++++ +E + T
Sbjct: 92 IKINDPVRMYLKEIGKVELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADT----- 146
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R+L+ + G + K +++ +N+RLV+SIAK + G GM DL+Q
Sbjct: 147 ------ERQLKDLIMKGEISKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQ 191
>gi|406926592|gb|EKD62776.1| hypothetical protein ACD_52C00059G0002 [uncultured bacterium]
Length = 359
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KDK+I SN+RLV+SIAK Y G G++L DL+Q
Sbjct: 122 AKDKLIESNLRLVVSIAKKYIGRGLSLLDLIQ 153
>gi|345014897|ref|YP_004817251.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344041246|gb|AEM86971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 414
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
+YLR LL+A EE++L+ ++ L E E+ G +P A
Sbjct: 120 QYLREIGRIP-LLSAVEEVELARRVEAGLFAE-------EKLGNTPDLDSQLAV------ 165
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 166 DLDRLVVLGRVAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQ 208
>gi|33864510|ref|NP_896070.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33641290|emb|CAE22420.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 344
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 21/108 (19%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + + ++ LLTA EE++L+ +Q + +L L E
Sbjct: 54 TDAIGFYLSSIGRVPLLTAAEEIELAHHVQAMKELLELPEQ------------------- 94
Query: 271 VDQRELRR-RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
DQ +R ++ G +D+M+++N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 95 -DQTPRQRHKIRMGKRARDRMMSANLRLVVSVAKKYQNQGLELLDLVQ 141
>gi|312195044|ref|YP_004015105.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226380|gb|ADP79235.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 424
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 237 AGIQDLLKLEGLREV-------------LSERCGGSPTFAQWAAAAGVD-----QRELRR 278
AG DL+++ LRE+ LS+R FA+ A D R+L+
Sbjct: 122 AGTADLVRMY-LREIGRVPLLNAAQEVELSKRVEAG-LFAEHKLATAADLEPELHRDLKL 179
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G K +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 180 LVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 218
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 286 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 336
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 337 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 368
>gi|86742187|ref|YP_482587.1| sigma 38 [Frankia sp. CcI3]
gi|86569049|gb|ABD12858.1| sigma 38 [Frankia sp. CcI3]
Length = 422
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 8/49 (16%)
Query: 275 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 170 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAA 269
DP+R LLTA EE+ L+ I+ G + T + A
Sbjct: 90 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDE 134
Query: 270 GV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 135 GIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 187
>gi|159896899|ref|YP_001543146.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889938|gb|ABX03018.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 391
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 16/120 (13%)
Query: 199 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 258
RRK+ E YLR LLTA EE+ L+ I+ K E ++ +E+
Sbjct: 81 RRKKTLYSEAVEDSVQMYLR-EIGEVELLTAEEEITLAKQIETGRKAE--HQLQTEQ--- 134
Query: 259 SPTFAQWAAAAGVDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+A W D+R L RR+++G + K+ +N+RLV+S+AK Y G M+ DL+Q
Sbjct: 135 ---YATW------DERTALERRVDFGNEGRRKLTQANLRLVVSVAKKYIGNHMSFMDLIQ 185
>gi|124024683|ref|YP_001018990.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123964969|gb|ABM79725.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 344
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 277 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R ++ G +D+M+++N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 101 RHKIRMGKRARDRMMSANLRLVVSVAKKYQNQGLELLDLVQ 141
>gi|116074244|ref|ZP_01471506.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069549|gb|EAU75301.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 19/111 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + Y ++ LLT EE++L+ +Q + +L L ER
Sbjct: 51 TDSIGYYLSSIGRIPLLTPAEEIELAHHVQAMKQL--LETPEDERT-------------- 94
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQAL 321
RE R ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ A+
Sbjct: 95 --PRE-RHKIRMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAI 142
>gi|452821943|gb|EME28967.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 540
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 210 YSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+SD Y+ A SRLL+ EE +L+ ++ +L +++ + ++ G + +WA A
Sbjct: 218 FSDG--YIHAI-DKSRLLSQEEEAELANYLKKQTRLIDIQQRMMQKFGRKLSLEEWAIRA 274
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY-QGAGMNLQDLVQL 318
G+ ++L + G K+K+IT+N+RLV SIA + + N VQL
Sbjct: 275 GMSVQDLHDAIILGNNAKEKLITANLRLVHSIASRFAHDSNKNFHKPVQL 324
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTANEE++LS I+ + E ER A +G +R L + G
Sbjct: 62 LLTANEEVELSERIERGDEAE-------ER------LATEDQLSGTQRRNLEHEVERGND 108
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +I +N+RLV+SIAK Y G G++L DL+Q
Sbjct: 109 ARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQ 140
>gi|407642486|ref|YP_006806245.1| RNA polymerase principal sigma factor hrdA [Nocardia brasiliensis
ATCC 700358]
gi|407305370|gb|AFT99270.1| RNA polymerase principal sigma factor hrdA [Nocardia brasiliensis
ATCC 700358]
Length = 316
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 24/112 (21%)
Query: 212 DPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP++ YLR + LLTA +E++L+ AG+Q +L E+ AQ
Sbjct: 19 DPIKDYLRLIGRTP-LLTATQEVELATRIEAGVQAAQRLAEEDEL---------DVAQ-- 66
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ-GAGMNLQDLVQ 317
+R L+RR+ G KD M+ +N+RLV+SIAK Y AG++L DLVQ
Sbjct: 67 ------RRALQRRVAEGQRAKDHMVEANLRLVVSIAKRYPLPAGLSLLDLVQ 112
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 176 ARRTRAAEKAAANVMSVKSGSTS-RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 234
A+ T EK A + + + S + R+ R + +D +R LL A EE++
Sbjct: 150 AKETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 209
Query: 235 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 289
L+ I+ L E LR ++ G T AQ +R LN+ G K+
Sbjct: 210 LAKRIEAGLFATERLRRIME--SGEKITTAQ------------KRDLNWISRDGNRAKNH 255
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 256 LLEANLRLVVSLAKRYTGRGMAFLDLIQ 283
>gi|415722105|ref|ZP_11468993.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
gi|388060269|gb|EIK82968.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
Length = 434
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 227
>gi|87301519|ref|ZP_01084359.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283736|gb|EAQ75690.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 322
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 19/92 (20%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ +Q + ++L E S T Q R ++ G
Sbjct: 47 LLTAAEEIELAHHVQAM-------KLLLELPDASLTPRQ------------RHQIRMGGR 87
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 88 ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 119
>gi|415723156|ref|ZP_11469330.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
gi|388063606|gb|EIK86175.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
Length = 429
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 128 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 168
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 169 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 222
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A E++LS I+ L E L E ER GV + EL R +
Sbjct: 47 SRTPLLDAEREVELSRTIEAGLYAEHLLEQGEER-------------RGVSREELERLVT 93
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 94 EGQRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 129
>gi|386846220|ref|YP_006264233.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359833724|gb|AEV82165.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 333
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A E++LS I+ L E L E ER G+ + EL R +
Sbjct: 47 SRTPLLDAAREVELSKAIEAGLYAEHLLEQGEER-------------RGISREELERLVT 93
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 94 EGSRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 129
>gi|111225055|ref|YP_715849.1| alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
gi|111152587|emb|CAJ64329.1| Alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
Length = 373
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 8/49 (16%)
Query: 275 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 121 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 167
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE+ L+ ++ L E E+ +P A+
Sbjct: 37 SDLFRQYLREIGRIP-LLTAEEEVDLARRVEAGLFAE-------EKLANTPDLDSRLAS- 87
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K K+I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 88 -----DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQ 130
>gi|25991936|gb|AAN76995.1|AF481769_1 primary sigma 70 transcriptional factor [Frankia sp. ACN14a]
Length = 385
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 8/49 (16%)
Query: 275 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 133 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 179
>gi|415715691|ref|ZP_11466114.1| RNA polymerase sigma factor [Gardnerella vaginalis 1400E]
gi|388058138|gb|EIK80936.1| RNA polymerase sigma factor [Gardnerella vaginalis 1400E]
Length = 434
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 227
>gi|415707695|ref|ZP_11462312.1| RNA polymerase sigma factor [Gardnerella vaginalis 0288E]
gi|415712116|ref|ZP_11464612.1| RNA polymerase sigma factor [Gardnerella vaginalis 55152]
gi|388053374|gb|EIK76363.1| RNA polymerase sigma factor [Gardnerella vaginalis 0288E]
gi|388057343|gb|EIK80175.1| RNA polymerase sigma factor [Gardnerella vaginalis 55152]
Length = 434
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 227
>gi|308234847|ref|ZP_07665584.1| RNA polymerase sigma factor [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114490|ref|YP_003985711.1| DNA-directed RNA polymerase sigma subunit RpoD [Gardnerella
vaginalis ATCC 14019]
gi|385801872|ref|YP_005838275.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis HMP9231]
gi|415702756|ref|ZP_11458902.1| RNA polymerase sigma factor [Gardnerella vaginalis 284V]
gi|415705487|ref|ZP_11460758.1| RNA polymerase sigma factor [Gardnerella vaginalis 75712]
gi|417556475|ref|ZP_12207534.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 315-A]
gi|310945984|gb|ADP38688.1| DNA-directed RNA polymerase sigma subunit RpoD [Gardnerella
vaginalis ATCC 14019]
gi|333394129|gb|AEF32047.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis HMP9231]
gi|333602970|gb|EGL14395.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 315-A]
gi|388052209|gb|EIK75233.1| RNA polymerase sigma factor [Gardnerella vaginalis 75712]
gi|388053302|gb|EIK76293.1| RNA polymerase sigma factor [Gardnerella vaginalis 284V]
Length = 434
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 26/114 (22%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 270 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 227
>gi|218442621|ref|YP_002380941.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
gi|218174979|gb|ACK73711.1| RNA polymerase, sigma 32 subunit, RpoH [Cyanothece sp. PCC 7424]
Length = 308
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YL+ T LL +++E+ L IQ KL+ ++ G + + + +++ E
Sbjct: 14 YLKNFTRYE-LLNSSQEIDLGQKIQKWQKLKHQFVQFQKKTGKKTSVFDFCSDFQLEEAE 72
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K++++ N+RLVI++AK Y G G++ +DL+Q
Sbjct: 73 FYLVYEEGQQAKNQLVQGNLRLVINLAKKYLGRGLSFEDLLQ 114
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 267 AAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AA VD L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+Q
Sbjct: 114 AAEEVD---LAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQ 162
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 27/116 (23%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA EE M++ AG+ +LE A
Sbjct: 79 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATAELE------------------RA 120
Query: 267 AAAGV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 121 EDEGIELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 176
>gi|226357433|ref|YP_002787172.1| sigma-70 family RNA polymerase sigma factor [Deinococcus deserti
VCD115]
gi|226319423|gb|ACO47418.1| putative RNA polymerase sigma factor, sigma-70 family [Deinococcus
deserti VCD115]
Length = 363
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
+DP+R LLT EE+ L+ AG + +LE E L ER
Sbjct: 60 NDPVRQYLHEIGRVPLLTVTEEIDLARRMEAGQEARTQLETEHE-LGER----------- 107
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++R L+R + G K ++I +N+RLV+SIAK Y GM L DL+Q
Sbjct: 108 -----ERRRLQRTVEDGEHAKQQLIEANLRLVVSIAKKYANRGMGLLDLIQ 153
>gi|149177995|ref|ZP_01856592.1| RNA polymerase sigma factor rpoS [Planctomyces maris DSM 8797]
gi|148843188|gb|EDL57554.1| RNA polymerase sigma factor rpoS [Planctomyces maris DSM 8797]
Length = 279
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 272 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++REL R+ +G +D+M+ +N+RLV++IA+ Y G G+ LQDL++
Sbjct: 34 EERELSNRIEHGDKEARDRMVRANLRLVVNIARAYSGKGLPLQDLIE 80
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 79 AGVEKAELQRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 127
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LL+A +E++L+ ++ L E ER G+P A
Sbjct: 59 SDLFRQYLREIGRIP-LLSAADEVELARRVEAGLFAE-------ERLAGTPDPDSGLAV- 109
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 110 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 152
>gi|158340842|ref|YP_001522010.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158311083|gb|ABW32696.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 299
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ Q EL + G K +MI N+RLV++IAK YQ GM+L DL+Q
Sbjct: 46 GISQAELDQIQKRGKRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQ 93
>gi|333997997|ref|YP_004530609.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
gi|333739459|gb|AEF84949.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
Length = 357
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 277 RRRLNYGILC-KDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
R RL+ +L K++MI SN+RLV+SIAKNYQ G++L DL+
Sbjct: 111 RSRLDESLLLYKNRMINSNLRLVVSIAKNYQHRGLSLLDLI 151
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P + G+D L R + G +
Sbjct: 153 LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLD---SQLGLD---LDRLVVMGRM 199
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 200 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 231
>gi|359461563|ref|ZP_09250126.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 299
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G+ Q EL + G K +MI N+RLV++IAK YQ GM+L DL+Q
Sbjct: 46 GISQAELDQIQKRGQRAKHRMICGNLRLVVTIAKKYQKRGMDLIDLIQ 93
>gi|219125233|ref|XP_002182890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405684|gb|EEC45626.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 312
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
+T +E+QL+ IQ +L+G R L + G S T +WA G+ +ELRR +N
Sbjct: 1 VTPEQEIQLARIIQQGAQLQGSRVELENQLGRSCTKQEWADKVGLSNKELRRVVNDYRRA 60
Query: 287 KDKMITSNIRLVISIAKNYQGA-----GMNLQDLVQLQALRYLNMA 327
K ++T+N+ LV ++ G+ G+ ++L+Q +L L A
Sbjct: 61 KHDLVTANLGLVHAVVNQQYGSLKTHTGITKEELIQEGSLGLLRAA 106
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW-AAAA 269
+DP++ LL A +E++L+ I+ L E E LS+ G W A
Sbjct: 238 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ERLSKEFGEG-----WDKTKA 289
Query: 270 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++R L R L + G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 290 SAEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 341
>gi|336179421|ref|YP_004584796.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334860401|gb|AEH10875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 425
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 237 AGIQDLLKLEGLREV-------------LSERCGGSPTFAQWAAAAGVD-QRELRRRLNY 282
AG DL+++ LRE+ LS+R FA++ D ELRR L
Sbjct: 123 AGTADLVRMY-LREIGKVPLLNAAQEVELSKRVEAG-LFAEYKLDTDTDLAPELRRDLQT 180
Query: 283 ----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 181 LVRDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 219
>gi|253761922|ref|XP_002489335.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
gi|241946983|gb|EES20128.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
Length = 238
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%), Gaps = 2/34 (5%)
Query: 290 MITSNIRLVISIAKNYQGAGMNLQDLVQ--LQAL 321
M+TSN+RLVISIA+ ++G GM+L DL+Q +Q L
Sbjct: 1 MVTSNVRLVISIAREFEGPGMDLYDLIQEGMQGL 34
>gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
Length = 528
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQLQALRYL 324
K+ ++ +N+RLV+S+AK Y G GM DL+Q LR +
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLRLI 329
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SDP+R LLTA EE+ L+ I+ L E L E + A
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIEAGLFAAEKLSEA-----------RRVTVAL 141
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 142 RVDLEAVERD---GNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQ 186
>gi|224007213|ref|XP_002292566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971428|gb|EED89762.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 338
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ L ++ L+ LEG R L E PTFAQWA+A L++++
Sbjct: 15 LLYKEDEVLLGRQVRLLMGLEGKRRDLEEELLRPPTFAQWASATNHTVPSLKQQIRRSQR 74
Query: 286 CKDKMITSNIRLVISIAKN 304
K +I +N+RLVI++A+
Sbjct: 75 AKAALIEANLRLVITVARQ 93
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++REL + G L K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 368 ERRELHFMASDGQLAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQ 413
>gi|218295160|ref|ZP_03495996.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
gi|218244363|gb|EED10888.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermus aquaticus
Y51MC23]
Length = 439
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 30/140 (21%)
Query: 208 VDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSER 255
V SDP+R LLT EE+ L+ G++ + KL E +REV+ +
Sbjct: 91 VSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAK 150
Query: 256 CGGS------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRL 297
G+ P + V++ +EL+R L+ G + +I +N+RL
Sbjct: 151 ILGTARIQKIPGLKEKLDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRL 210
Query: 298 VISIAKNYQGAGMNLQDLVQ 317
V+SIAK Y G G++ DL+Q
Sbjct: 211 VVSIAKKYTGRGLSFLDLIQ 230
>gi|271963319|ref|YP_003337515.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270506494|gb|ACZ84772.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 312
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 10/116 (8%)
Query: 202 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 261
R Q V D L A LLTA EE++L+ I+ L E L + GG
Sbjct: 8 RTQDQHVSDRDLLGTYLAEIGRVPLLTAEEEVELAKRIEAGLFAEQLLD------GG--- 58
Query: 262 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A+ A D+ EL R G KD+ I +N+RLV+++A+ Y G GM L DLVQ
Sbjct: 59 LAEPRIADAADE-ELERLAVSGQRAKDEFIQANLRLVVAVARKYSGRGMPLIDLVQ 113
>gi|40353299|gb|AAR84413.1| alternative primary sigma 70 factor [Frankia sp. ORS020607]
Length = 220
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 8/49 (16%)
Query: 275 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 8 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 54
>gi|260655747|ref|ZP_05861216.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
gi|260629363|gb|EEX47557.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
Length = 969
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 721 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQ 763
>gi|255553456|ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 389
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 227 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 286
L++ EE + ++D ++E R ++E PT Q A A + ++ + + ILC
Sbjct: 117 LSSIEEAEFCLCLKDHARVEAARRRIAETQEHEPTSKQLAEALRMRKKNVDK-----ILC 171
Query: 287 KDKM----ITSNIR-LVISIAKNYQGAGMNLQDLVQ 317
K + IT N R LV+SIA Y+G G++LQDL+Q
Sbjct: 172 KGRQSRERITGNYRRLVLSIANRYRGKGLSLQDLIQ 207
>gi|443293686|ref|ZP_21032780.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
gi|385883544|emb|CCH20931.1| RNA polymerase principal sigma factor [Micromonospora lupini str.
Lupac 08]
Length = 316
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A +E+ LS I+ L E L + A GVD+ +L R +
Sbjct: 30 SRTPLLDAAKEVDLSKAIEAGLYAEHL-------------LGEDAVPDGVDRADLERLVV 76
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 77 EGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 112
>gi|374853415|dbj|BAL56324.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374857281|dbj|BAL60134.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 334
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 275 ELRRRLNYGILC-KDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
EL R+ G C +D++IT+N+RLV+SIAK Y G G++ DL+Q
Sbjct: 79 ELASRVVAGEKCARDELITANLRLVVSIAKKYMGRGLSFLDLIQ 122
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 275 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+Q
Sbjct: 119 DLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQ 162
>gi|94984583|ref|YP_603947.1| RNA polymerase subunit sigma 28 [Deinococcus geothermalis DSM
11300]
gi|94554864|gb|ABF44778.1| RNA polymerase, sigma 28 subunit [Deinococcus geothermalis DSM
11300]
Length = 532
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 18/110 (16%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ L+ I++ E R++L E A
Sbjct: 229 NDPVRQYLHEIGRVPLLTLEEEIALARRIEEG---EEARKMLEE------------AGDE 273
Query: 271 VD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D +R L R++ G + +I +N+RLV+SIAK Y G G+ DL+Q
Sbjct: 274 LDDRARRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 323
>gi|294790965|ref|ZP_06756123.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
gi|294458862|gb|EFG27215.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
Length = 588
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 336 KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 380
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTS-RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 232
R A TR++++ +A+ + + S + R+ R + +D +R LL A EE
Sbjct: 128 RVAPTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 187
Query: 233 MQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 291
++L+ I+ L E +R++ SP +R+LR + G K+ ++
Sbjct: 188 VELAKRIEAGLYGAERIRKLFESNDKLSPQM----------RRDLRWIVRDGERAKNHLL 237
Query: 292 TSNIRLVISIAKNYQGAGMNLQDLVQ 317
+N+RLV+S+AK Y G GM DL+Q
Sbjct: 238 EANLRLVVSLAKRYTGRGMAFLDLIQ 263
>gi|229820409|ref|YP_002881935.1| RNA polymerase sigma factor [Beutenbergia cavernae DSM 12333]
gi|229566322|gb|ACQ80173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Beutenbergia
cavernae DSM 12333]
Length = 499
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 21/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A +E++L+ I+ L E E L+ GGS F
Sbjct: 200 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ETLA--AGGSMEF-------- 246
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+LRR L + G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 247 ----KLRRELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 293
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
S +T+RR RP+ +++D P +R + LLTA +E++L+ I+ L +
Sbjct: 3 SPTTTRRARPTAEDLDAQSPSADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAAHVL 62
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
E +R S +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 63 ET-GKRLSASK------------KRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTGRG 109
Query: 310 MNLQDLVQ 317
M L DL+Q
Sbjct: 110 MPLLDLIQ 117
>gi|427703656|ref|YP_007046878.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427346824|gb|AFY29537.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 341
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 19/107 (17%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D + + +T LLT EE++L+ +Q L+ L E G T Q
Sbjct: 51 ADSIGWYLSTIGRVPLLTPAEEIELAHHVQAGKTLQSLVE-------GELTARQ------ 97
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R+L +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 98 ------KRQLRMAQRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 138
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR S RLLTA +E++L+ I+ L E L L+E P + +RE
Sbjct: 40 YLR-LISRVRLLTAEQEVELAKRIEAGLYAERL---LAEEPVLEPRY----------RRE 85
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L G K+ + +N+RLV+S+AK Y G G+ DL+Q
Sbjct: 86 LGLLAEDGRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQ 127
>gi|221636011|ref|YP_002523887.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
gi|221157983|gb|ACM07101.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43)
[Thermomicrobium roseum DSM 5159]
Length = 334
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 19/103 (18%)
Query: 215 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 274
RY R RLLT EE++ S + R G + A+ AG D
Sbjct: 47 RYFR-EVGGHRLLTHQEEIEYSRAV---------------RAGLA---ARKRIEAGEDTP 87
Query: 275 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
ELR + G ++K+I N+RLV+SIAK Y+ + + L DL+Q
Sbjct: 88 ELRELVRKGQEAREKLIRHNLRLVVSIAKRYRSSELPLIDLIQ 130
>gi|318040855|ref|ZP_07972811.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0101]
Length = 321
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 23/94 (24%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR--LNYG 283
LLTA EE++L+ +Q + +L+ L P+ DQ R++ + G
Sbjct: 46 LLTAAEEIELAHHVQLMKQLQEL-----------PS----------DQLTPRQKHQIRMG 84
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 85 CRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 118
>gi|283780188|ref|YP_003370943.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pirellula staleyi
DSM 6068]
gi|283438641|gb|ADB17083.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pirellula staleyi
DSM 6068]
Length = 320
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
D+REL + G + +D+M+ +N+RLV++IA+ Y G G++LQDL++
Sbjct: 60 DERELAAAIADGDVRARDRMVRANLRLVVNIARGYTGKGLSLQDLIE 106
>gi|339499649|ref|YP_004697684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
caldaria DSM 7334]
gi|338833998|gb|AEJ19176.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
caldaria DSM 7334]
Length = 346
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 26/30 (86%)
Query: 287 KDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
K+KMI SN+RLV+SIAKNYQ G++L DL+
Sbjct: 112 KNKMINSNLRLVVSIAKNYQHRGLSLLDLI 141
>gi|308233952|ref|ZP_07664689.1| RNA polymerase, sigma 70 subunit, RpoD [Atopobium vaginae DSM
15829]
gi|328943964|ref|ZP_08241429.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
gi|327491933|gb|EGF23707.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
Length = 441
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 191 SVKSGSTSRRKRPSVQEVDYS------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 244
+ K S R R + +D S DP+R LL A+EE+ L+ IQ
Sbjct: 111 ATKKRSNKRSSRARTRRIDSSAVMLTGDPVRMYLKEIGKVDLLNASEEVHLAMKIQ---- 166
Query: 245 LEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRRRLNYGILCKDKMITSNIRLV 298
G + AA G +QR L R G+ K + ++N+RL
Sbjct: 167 -----------AGTDASKKLEAAENGEIELTRAEQRRLMRIEQVGLDAKQALTSANLRLT 215
Query: 299 ISIAKNYQGAGMNLQDLVQ 317
+SIAK Y G GM DL+Q
Sbjct: 216 VSIAKRYVGRGMLFLDLIQ 234
>gi|111018672|ref|YP_701644.1| sigma-70 type sigma factor [Rhodococcus jostii RHA1]
gi|110818202|gb|ABG93486.1| sigma factor, sigma 70 type, probable group 2 [Rhodococcus jostii
RHA1]
Length = 520
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R+L R G K + + +N+RLV+SIA+ YQG G++L DLVQ
Sbjct: 270 HRDLHRVCRDGQHAKRRFLEANLRLVVSIARRYQGRGLDLLDLVQ 314
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 174 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 233
+++ +T AA K+ V + R+ R + +D +R LL A EE+
Sbjct: 175 KESSKTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 234
Query: 234 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 288
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 235 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 280
Query: 289 KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 281 HLLEANLRLVVSLAKRYTGRGMAFLDLIQ 309
>gi|171742642|ref|ZP_02918449.1| hypothetical protein BIFDEN_01756 [Bifidobacterium dentium ATCC
27678]
gi|171278256|gb|EDT45917.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium ATCC
27678]
Length = 461
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQMD----FKR----- 209
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 254
>gi|337286185|ref|YP_004625658.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermodesulfatator
indicus DSM 15286]
gi|335359013|gb|AEH44694.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermodesulfatator indicus DSM 15286]
Length = 443
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD+M+ +N+RLV+SIAK Y G G++L DL+Q
Sbjct: 207 AKDEMVKANLRLVVSIAKRYMGQGLSLADLIQ 238
>gi|294629207|ref|ZP_06707767.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292832540|gb|EFF90889.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 386
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 102 LLTAAEEVELARRVEAGLFAE-------EKLSSTPDLDSRLAG------DLDRLVVSGRM 148
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 149 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 180
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
DP+R LLTA EE+ L+ +K+E E G A+ A
Sbjct: 117 GDPVRMYLKEIGKVPLLTAAEEIDLA------MKIEAGVE-----AGEQLEAAEADNAEE 165
Query: 271 VDQRELRR--RLN-YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ +RE RR R+ G+ K ++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 166 LSRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQ 215
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE++L+ I+ L E LR V+ G + AQ RR LN+
Sbjct: 201 LLNAEEEVELAKRIEAGLFATERLRRVME--AGEKLSVAQ------------RRDLNWIS 246
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 247 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 283
>gi|359546157|pdb|3UGO|A Chain A, Crystal Structure Of Rna-Polymerase Sigma Subunit Domain 2
Complexed With -10 Promoter Element Ssdna Oligo (Tacaat)
gi|359546161|pdb|3UGP|A Chain A, Crystal Structure Of Rna-Polymerase Sigma Subunit Domain 2
Complexed With -10 Promoter Element Ssdna Oligo (Tataat)
gi|405945100|pdb|4GOR|A Chain A, Crystallographic Analysis Of An Rna-Polymerase
Sigma-Subunit Fragment Complexed With -10 Promoter
Element Ssdna: G-Quadruplex Formation And Crystal
Packing
gi|405945101|pdb|4GOR|B Chain B, Crystallographic Analysis Of An Rna-Polymerase
Sigma-Subunit Fragment Complexed With -10 Promoter
Element Ssdna: G-Quadruplex Formation And Crystal
Packing
Length = 245
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 30/137 (21%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 258
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 65
Query: 259 S------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRLVIS 300
+ P + V++ +EL+R L+ G + +I +N+RLV+S
Sbjct: 66 TARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVS 125
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAK Y G G++ DL+Q
Sbjct: 126 IAKKYTGRGLSFLDLIQ 142
>gi|429197710|ref|ZP_19189588.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
gi|428666600|gb|EKX65745.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
Length = 429
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ +P A
Sbjct: 130 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSELAL- 180
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 181 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 223
>gi|424844271|ref|ZP_18268882.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
gi|363985709|gb|EHM12539.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
Length = 805
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 276 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+Q
Sbjct: 557 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQ 599
>gi|302336705|ref|YP_003801911.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
smaragdinae DSM 11293]
gi|301633890|gb|ADK79317.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
smaragdinae DSM 11293]
Length = 322
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 207 EVDY--SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 264
+VD+ SDPL S+ LLT EE+ + IQ+ R+ +
Sbjct: 14 DVDFNDSDPLSLYLKQISAYPLLTKEEELMIGREIQE-------RKQELLELEELLGKEE 66
Query: 265 WAAAAGVDQRELRRRLNYGILCK--DKMITSNIRLVISIAKNYQGAGMNLQDLV 316
+A + R+R +L K D+MITSN+RLV+SIAK YQ G++ DL+
Sbjct: 67 IERSAYL----FRKRTIEAVLRKSRDRMITSNLRLVVSIAKKYQHRGLSFLDLI 116
>gi|430742379|ref|YP_007201508.1| sigma-70 family RNA polymerase sigma factor [Singulisphaera
acidiphila DSM 18658]
gi|430014099|gb|AGA25813.1| RNA polymerase sigma factor, sigma-70 family [Singulisphaera
acidiphila DSM 18658]
Length = 275
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 272 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++REL R+ G L +D M+ +N+RLV++IA+ Y G GM L+DL++
Sbjct: 32 EERELAERVAMGDPLARDHMVKANLRLVVNIARGYLGKGMCLEDLIE 78
>gi|289751356|ref|ZP_06510734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
gi|289691943|gb|EFD59372.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T92]
Length = 470
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPA---------AQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|20151056|pdb|1KU2|A Chain A, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
gi|20151057|pdb|1KU2|B Chain B, Crystal Structure Of Thermus Aquaticus Rna Polymerase
Sigma Subunit Fragment Containing Regions 1.2 To 3.1
Length = 241
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 30/137 (21%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 258
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 61
Query: 259 S------PTFAQWAAAAGVDQ---------RELRRRLNY---GILCKDKMITSNIRLVIS 300
+ P + V++ +EL+R L+ G + +I +N+RLV+S
Sbjct: 62 TARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVS 121
Query: 301 IAKNYQGAGMNLQDLVQ 317
IAK Y G G++ DL+Q
Sbjct: 122 IAKKYTGRGLSFLDLIQ 138
>gi|386346777|ref|YP_006045026.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
thermophila DSM 6578]
gi|339411744|gb|AEJ61309.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
thermophila DSM 6578]
Length = 338
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YL+ SS LLT EE + IQ + KL LRE+ S + A ++R
Sbjct: 45 YLKQI-SSYPLLTPEEEHWIGGEIQRI-KLR-LREL-------SSLPEEQRAHHFEEERR 94
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
L +RL K++MIT+N+RLV+SIAK YQ G++L DL+
Sbjct: 95 LDQRLRE---LKNRMITANLRLVVSIAKKYQHRGLSLLDLI 132
>gi|159039487|ref|YP_001538740.1| RpoD family RNA polymerase sigma factor [Salinispora arenicola
CNS-205]
gi|157918322|gb|ABV99749.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 329
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 269 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 77 AGVERAELQRLVAEGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 125
>gi|427702480|ref|YP_007045702.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427345648|gb|AFY28361.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 310
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 280 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G K++M+ +N+RLV+S+AK YQG G+ L DL+Q
Sbjct: 68 IKVGRRSKERMMRANLRLVVSVAKKYQGKGLELLDLIQ 105
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 139 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 198
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR +++ G + AQ +R LN+ G K+ ++
Sbjct: 199 RIEAGLFATERLRRMMA--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 244
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
+N+RLV+S+AK Y G GM DL+Q
Sbjct: 245 ANLRLVVSLAKRYTGRGMAFLDLIQ 269
>gi|289758831|ref|ZP_06518209.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289714395|gb|EFD78407.1| predicted protein [Mycobacterium tuberculosis T85]
Length = 330
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 324
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
SD R YLR LLTA EE++L+ ++ L E E+ +P A
Sbjct: 129 SDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL- 179
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 180 -----DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 222
>gi|72383143|ref|YP_292498.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002993|gb|AAZ58795.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 340
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ---DLLKLEGLREVLSERCGGSPTFAQWAA 267
+D + + + LLT EE++L+ +Q DLL L L ER
Sbjct: 50 TDAIGFYLTSIGRVPLLTPAEEIELAHHVQQMKDLLNLP-----LEERSTRQ-------- 96
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 97 ---------KHKIKMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 137
>gi|333994312|ref|YP_004526925.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
gi|333735508|gb|AEF81457.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema
azotonutricium ZAS-9]
Length = 333
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 281 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
N ++ K++MI SN+RLV+SIAKNYQ G++L DL+
Sbjct: 92 NLVLVNKNRMINSNLRLVVSIAKNYQHRGLSLLDLI 127
>gi|289444245|ref|ZP_06433989.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
gi|289417164|gb|EFD14404.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T46]
Length = 375
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
>gi|384191381|ref|YP_005577129.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192526|ref|YP_005578273.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289178873|gb|ADC86119.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|340365263|gb|AEK30554.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 522
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 28/115 (24%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 262
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 221 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 273
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 274 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 315
>gi|23295779|gb|AAN12882.1| principal sigma factor RpoD [Bifidobacterium animalis subsp.
lactis]
Length = 508
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 28/115 (24%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 262
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 207 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 259
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 260 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 301
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 20/143 (13%)
Query: 181 AAEKAAANVMSVKSGSTS-RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 239
AA+KA+ + + + S + R+ R + +D +R LL A EE++L+ I
Sbjct: 145 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 204
Query: 240 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 294
+ L E LR ++ G T AQ +R LN+ G K+ ++ +N
Sbjct: 205 EAGLFATERLRRMVD--AGEKITTAQ------------KRDLNWISRDGNRAKNHLLEAN 250
Query: 295 IRLVISIAKNYQGAGMNLQDLVQ 317
+RLV+S+AK Y G GM DL+Q
Sbjct: 251 LRLVVSLAKRYTGRGMAFLDLIQ 273
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 178 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 237
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 134 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 193
Query: 238 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 292
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 194 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 239
Query: 293 SNIRLVISIAKNYQGAGMNLQDLVQ 317
+N+RLV+S+AK Y G GM DL+Q
Sbjct: 240 ANLRLVVSLAKRYTGRGMAFLDLIQ 264
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 143 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 202
S ++EP E + L++ +Q I + + + + K + A E+ N +SV G
Sbjct: 42 SFEMEPEQFE-EFLDQIEAQGIEMDRKEEADAK---SDAEEQFDLNDLSVPPG------- 90
Query: 203 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 262
V +DP+R LLT EE+ L+ IQ+ ++ E L+E +P
Sbjct: 91 -----VRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEA---ELAETNEMTPK- 141
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+D +R G K K+ +N+RLV+SIAK Y G GM DL+Q
Sbjct: 142 --------IDAAIIR-----GENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQ 183
>gi|307718699|ref|YP_003874231.1| RNA polymerase sigma factor RpoD [Spirochaeta thermophila DSM 6192]
gi|306532424|gb|ADN01958.1| RNA polymerase sigma factor RpoD [Spirochaeta thermophila DSM 6192]
Length = 338
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 207 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
E+ +D L SS LLT EE + IQ + KL LRE+ S +
Sbjct: 35 ELSDADALALYLKQISSYPLLTPEEEHWIGGEIQRI-KLR-LREL-------SSLPEEQR 85
Query: 267 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 316
A ++R L +RL K++MIT+N+RLV+SIAK YQ G++L DL+
Sbjct: 86 AHHFEEERRLDQRLRE---LKNRMITANLRLVVSIAKKYQHRGLSLLDLI 132
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LL A EE++L+ I+ L E LR + SP +R+LR + G
Sbjct: 173 LLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL----------RRDLRWIVRDGE 222
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 223 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 255
>gi|124026883|ref|YP_001015998.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961951|gb|ABM76734.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 340
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 25/110 (22%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ---DLLKLEGLREVLSERCGGSPTFAQWAA 267
+D + + + LLT EE++L+ +Q DLL L L ER
Sbjct: 50 TDAIGFYLTSIGRVPLLTPAEEIELAHHVQQMKDLLNLP-----LEERSTRQ-------- 96
Query: 268 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ++ G +D+M+ +N+RLV+S+AK YQ G+ L DLVQ
Sbjct: 97 ---------KHKIKMGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQ 137
>gi|163846411|ref|YP_001634455.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222524178|ref|YP_002568649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163667700|gb|ABY34066.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222448057|gb|ACM52323.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 313
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 279 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
++N G + ++I SN+RLV+SIA+ YQG G++L DL+Q
Sbjct: 67 QVNAGEQARAQLINSNLRLVVSIARRYQGHGLSLLDLIQ 105
>gi|406956443|gb|EKD84538.1| hypothetical protein ACD_38C00204G0004 [uncultured bacterium]
Length = 363
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+DK+I++N+RLV+SIAK Y G GM+L DL++
Sbjct: 127 ARDKLISANLRLVVSIAKKYVGRGMSLLDLIE 158
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 167 RSRRQTERKARRTRAAEKAAAN--VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 224
R RRQ E A AE A+ V + R+ R + +D +R
Sbjct: 125 RRRRQPEEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKV 184
Query: 225 RLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 283
LL A EE++L+ I+ L +E +RE S G AQ +R++ G
Sbjct: 185 ALLNAEEEVELAKRIEAGLFAVEKMRE--SAEKGEKLPVAQ--------RRDMTWICRDG 234
Query: 284 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 235 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 268
>gi|309801431|ref|ZP_07695558.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
gi|308221946|gb|EFO78231.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
Length = 461
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQM----DFKR----- 209
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 254
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 194 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 249
S ST+ R RPS ++D P +R + LLTA +E++L+ I+ GL
Sbjct: 3 SPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIE-----AGLY 57
Query: 250 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 309
G T A+ +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 ASHVLATGKRLTVAK--------KRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRG 109
Query: 310 MNLQDLVQ 317
M L DL+Q
Sbjct: 110 MPLLDLIQ 117
>gi|183601374|ref|ZP_02962744.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683429|ref|YP_002469812.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191127|ref|YP_002968521.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196533|ref|YP_002970088.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194120|ref|YP_005579866.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195685|ref|YP_005581430.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|387820993|ref|YP_006301036.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|387822671|ref|YP_006302620.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679653|ref|ZP_17654529.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|183218980|gb|EDT89621.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621079|gb|ACL29236.1| principal sigma factor RpoD [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249519|gb|ACS46459.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251087|gb|ACS48026.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794116|gb|ADG33651.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|345282979|gb|AEN76833.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041297|gb|EHN17801.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|386653694|gb|AFJ16824.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|386655279|gb|AFJ18408.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 488
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 28/115 (24%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 262
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 281
>gi|386867263|ref|YP_006280257.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701346|gb|AFI63294.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 488
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 28/115 (24%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 262
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 263 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 281
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+D +R + LLTA EE++L+ I+ + + + E G P A
Sbjct: 31 ADLVRVYLNGIGKTALLTAAEEVELAKRIEAGVFAQHMLE-----TGSGP--------AS 77
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+Q
Sbjct: 78 TRREELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQ 124
>gi|386838431|ref|YP_006243489.1| RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|374098732|gb|AEY87616.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis 5008]
gi|451791723|gb|AGF61772.1| putative RNA polymerase principal sigma factor HrdC [Streptomyces
hygroscopicus subsp. jinggangensis TL01]
Length = 311
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 18/107 (16%)
Query: 215 RYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
RYL A +++ LLTA +E++L+ AG+ +LE R G + A
Sbjct: 13 RYL-AQIAATPLLTAEDEVRLARSIEAGVDAAAELE--------RAGDGES-----GPAP 58
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL + G+ KD MI +N+RLV+SIAK + G+ L D++Q
Sbjct: 59 HRRRELEAAVREGLHAKDHMIRANLRLVVSIAKRHAHRGVPLLDVIQ 105
>gi|338731696|ref|YP_004661088.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermotoga
thermarum DSM 5069]
gi|335366047|gb|AEH51992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
thermarum DSM 5069]
Length = 394
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K K+I SN+RLV+SIAK Y G G+ DL+Q
Sbjct: 136 ERELARRAQMGDEKAKKKLIQSNLRLVVSIAKKYMGRGLPFLDLIQ 181
>gi|238060708|ref|ZP_04605417.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
gi|237882519|gb|EEP71347.1| RNA polymerase sigma factor rpoD [Micromonospora sp. ATCC 39149]
Length = 331
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 222 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 281
S + LL A E+ LS I+ L E L E ++R AGVD+ +L R
Sbjct: 45 SRTPLLDAATEVDLSKSIEAGLYAEHLLE--TDRV-----------PAGVDRDDLERVAA 91
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G KD I +N+RLV+SIA+ Y +GM + DL+Q
Sbjct: 92 EGERAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQ 127
>gi|392946711|ref|ZP_10312353.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392290005|gb|EIV96029.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 422
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 6/43 (13%)
Query: 281 NYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+ G+L KD +++++N+RLV+S+AK Y G GM L DLVQ
Sbjct: 174 DLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQ 216
>gi|50954703|ref|YP_061991.1| RNA polymerase sigma factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951185|gb|AAT88886.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 440
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP++ LL A EE++L+ I+ L E +R +P
Sbjct: 141 ADPVKDYLKQIGKVPLLNAAEEVELAMRIEAGLFAE-------DRLANTPNMP------- 186
Query: 271 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 187 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQ 234
>gi|325106737|ref|YP_004267805.1| RNA polymerase sigma-70 subunit RpoD [Planctomyces brasiliensis DSM
5305]
gi|324967005|gb|ADY57783.1| RNA polymerase, sigma 70 subunit, RpoD [Planctomyces brasiliensis
DSM 5305]
Length = 575
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 274 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
RE++RR + K K+ N+RLV+SIAK Y+ G++ DL+Q
Sbjct: 304 REIKRRFGFWTEAKQKLSGGNLRLVVSIAKKYRNRGLSFLDLIQ 347
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 181 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 240
AA K+ V + R+ R + +D +R LL A EE++L+ I+
Sbjct: 187 AAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 246
Query: 241 -DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNI 295
L E LR ++ G + AQ +R LN+ G K+ ++ +N+
Sbjct: 247 AGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWISRDGNRAKNHLLEANL 292
Query: 296 RLVISIAKNYQGAGMNLQDLVQ 317
RLV+S+AK Y G GM DL+Q
Sbjct: 293 RLVVSLAKRYTGRGMAFLDLIQ 314
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 26/108 (24%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
DP+R YLR LLTA+EE++L+ + + +ER +P +
Sbjct: 134 DDPVRMYLREIGRVP-LLTAHEEIRLA---------QLMERGKAERLKPAPNY------- 176
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
R ++ G + ++ +N+RLV+S+AK Y G GMNL DL+Q
Sbjct: 177 --------RYISEGEEAQKRLTEANLRLVVSVAKKYIGRGMNLLDLIQ 216
>gi|296268951|ref|YP_003651583.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091738|gb|ADG87690.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 311
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLRE-VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 284
LLTA EE++L+ I+ L E L + L+E G T EL R G
Sbjct: 30 LLTAEEEVELAKRIEAGLFAEYLLDSALTEPRIGDAT-----------DEELERIAISGR 78
Query: 285 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
KD+ I +N+RLV+++A+ Y G GM L DLVQ
Sbjct: 79 RAKDEFIKANLRLVVAVARKYAGRGMPLIDLVQ 111
>gi|306822519|ref|ZP_07455897.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
gi|304554064|gb|EFM41973.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
Length = 472
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 221 RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 265
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 273 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+EL++ LN I K +M+ +N+RLVISIAK Y G++ DL+Q
Sbjct: 368 HQELKQWLNEAIKAKSEMVEANLRLVISIAKKYSNRGLSFLDLIQ 412
>gi|357399134|ref|YP_004911059.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355181|ref|YP_006053427.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337765543|emb|CCB74252.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365805689|gb|AEW93905.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 393
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 14/102 (13%)
Query: 216 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 275
YLR LLTA EE++L+ ++ L E E+ +P A +
Sbjct: 100 YLREIGRIP-LLTAEEEVELARRVEAGLFAE-------EKLEHTPDLDTRLAG------D 145
Query: 276 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 146 LDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 187
>gi|386856302|ref|YP_006260479.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
gi|379999831|gb|AFD25021.1| RNA polymerase sigma factor [Deinococcus gobiensis I-0]
Length = 390
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 211 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 270
+DP+R LLT EE+ L+ I++ E R++L E
Sbjct: 88 NDPVRQYLHEIGRVSLLTLEEEIALARRIEEG---EEARKILEEDLDLDDR--------- 135
Query: 271 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+R L R++ G + +I +N+RLV+SIAK Y G G+ DL+Q
Sbjct: 136 -GRRRLMRQMEDGAAARQGLIEANLRLVVSIAKKYTGRGLGFLDLIQ 181
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 226 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 282
LL A EE+ L+ I+ L E LR+ E SP ++RR LN+
Sbjct: 141 LLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSP--------------QMRRDLNWIV 186
Query: 283 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 187 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 223
>gi|172037252|ref|YP_001803753.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|354553864|ref|ZP_08973170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698706|gb|ACB51687.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|353554581|gb|EHC23971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 297
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 21/106 (19%)
Query: 212 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 271
D +R+ + + LL+ EE++L+ IQ +L L +E LS
Sbjct: 8 DTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLE-KEALS------------------ 48
Query: 272 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+E + + G +DKMI +N+RLV+SIAK Y +G++L DL+Q
Sbjct: 49 --KEEEKIVAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQ 92
>gi|123965877|ref|YP_001010958.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123200243|gb|ABM71851.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 307
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 225 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 281
+LLT +E+ + +Q+++ VL RC GG + +++ + + N
Sbjct: 15 QLLTPEKELTMGRKVQEMV-------VLINRCQTAGGKGSACEYSEVEKKKIKIGEKAKN 67
Query: 282 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
MIT+N+RLV+++AK YQG G+ L DL+Q
Sbjct: 68 -------AMITANLRLVVNLAKRYQGKGLELLDLIQ 96
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 29/117 (24%)
Query: 211 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 266
DP+R LLTA+EE M++ AG + KLE A
Sbjct: 157 GDPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASQKLE-------------------A 197
Query: 267 AAAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
A G + R L R G+ K +I++N+RL +SIAK Y G GM DL+Q
Sbjct: 198 ADNGEIELTRAEMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQ 254
>gi|239621277|ref|ZP_04664308.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239515738|gb|EEQ55605.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 488
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 236
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 237 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 281
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 265 WAAA--AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
W A G +ELR+ L KD+M+ +N+RLVISIAK Y G++ DL+Q
Sbjct: 424 WMTADEMGDAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQ 478
>gi|419759946|ref|ZP_14286231.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
gi|407514985|gb|EKF49771.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
Length = 371
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 273 QRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL RR G K K++ SN+RLV+SIAK Y G G++ DL+Q
Sbjct: 115 ERELARRAQLGDERAKQKLVESNLRLVVSIAKRYVGKGLSFLDLIQ 160
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 226 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 285
LL +E+ +Q ++ L +E L + PT ++A + + EL ++L G
Sbjct: 37 LLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKLSESELLQQLQQGYQ 96
Query: 286 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
K++MI +N+RLV+SIAK YQ ++ DL+Q
Sbjct: 97 AKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQ 128
>gi|339479381|gb|ABE95849.1| RNA polymerase principal sigma factor hrdB [Bifidobacterium breve
UCC2003]
Length = 472
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 211 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 269
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 270 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 317
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 265
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.123 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,272,886,861
Number of Sequences: 23463169
Number of extensions: 152372344
Number of successful extensions: 608559
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3302
Number of HSP's successfully gapped in prelim test: 2195
Number of HSP's that attempted gapping in prelim test: 601877
Number of HSP's gapped (non-prelim): 7894
length of query: 328
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 186
effective length of database: 9,027,425,369
effective search space: 1679101118634
effective search space used: 1679101118634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 77 (34.3 bits)