BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020253
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 212
LG + TD + + AH+A+LAARSPVF +MF H+++E + + ++I D+ +
Sbjct: 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 224
Query: 213 ACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQ 271
+ + +IY G + + + LL AADKY + LK C D+L ++ +N E L
Sbjct: 225 VFKEMMCFIYTGKAPNLDKMADD--LLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282
Query: 272 NAYLYQLPKLKSSCMRYL 289
A L+ +LK+ + ++
Sbjct: 283 LADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 212
LG + TD + + AH+A+LAARSPVF +MF H+++E + + ++I D+ +
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 75
Query: 213 ACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQ 271
+ + +IY G + + + LL AADKY + LK C D+L ++ +N E L
Sbjct: 76 VFKEMMCFIYTGKAPNLDKMADD--LLAAADKYALERLKVMCEDALCSNLSVENAAEILI 133
Query: 272 NAYLYQLPKLKS 283
A L+ +LK+
Sbjct: 134 LADLHSADQLKT 145
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Query: 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 212
LG + TD + + AH+A+LAARSPVF + F H+ +E + + ++I D+ +
Sbjct: 25 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPE 84
Query: 213 ACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQN 272
+ +IY + LL AADKY + LK C D+L ++ +N E L
Sbjct: 85 VFKEXXCFIYTG-KAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILIL 143
Query: 273 AYLYQLPKLKSSCMRYL 289
A L+ +LK+ + ++
Sbjct: 144 ADLHSADQLKTQAVDFI 160
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 159 EGIHTDIII---NASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI------PDM 209
+G+ DI + A AHR+VLAA + F + S E +++ P
Sbjct: 47 QGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGP 106
Query: 210 SIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLE 268
D +A + Y+Y G I H + L AD++ + LKE C + L + + N +
Sbjct: 107 EPDTVEAVIEYMYTGRIRVSTGSVHEV--LELADRFLLIRLKEFCGEFLKKKLHLSNCVA 164
Query: 269 RLQNAYLYQLPKL 281
A++Y L +L
Sbjct: 165 IHSLAHMYTLSQL 177
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 176 AHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRL 235
AH+ VLA S VF + F DL E + S I IPD+ A L Y Y + E T L
Sbjct: 26 AHKYVLAVGSSVFYAXFYGDLAEVK-SEIHIPDVEPAAFLILLKYXYSDEIDLEADT-VL 83
Query: 236 ALLRAADKYDICDLKEAC 253
A L AA KY + L +AC
Sbjct: 84 ATLYAAKKYIVPALAKAC 101
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 144 RSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELST 203
R + L +L R+ + I TD++I S AH+ VL A S +F S+F+ LK + LS
Sbjct: 11 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-RNLSV 69
Query: 204 IDI-PDMSIDACQAFLSYIY 222
I++ P+++ + L ++Y
Sbjct: 70 INLDPEINPEGFNILLDFMY 89
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 144 RSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELST 203
R + L +L R+ + I TD++I S AH+ VL A S +F S+F+ LK LS
Sbjct: 14 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-CNLSV 72
Query: 204 IDI-PDMSIDACQAFLSYIY 222
I++ P+++ + L ++Y
Sbjct: 73 INLDPEINPEGFCILLDFMY 92
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 159 EGIHTDIII---NASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI------PDM 209
+G+ DI + A AHR+VLAA + F + S E ++ P
Sbjct: 29 QGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGP 88
Query: 210 SIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLE 268
D +A + Y Y G I H + L AD++ + LKE C + L + + N +
Sbjct: 89 EPDTVEAVIEYXYTGRIRVSTGSVHEV--LELADRFLLIRLKEFCGEFLKKKLHLSNCVA 146
Query: 269 RLQNAYLYQLPKL 281
A+ Y L +L
Sbjct: 147 IHSLAHXYTLSQL 159
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 139 GITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKE 198
GI ++ L+ L T+G+ D++I HR+VLAA S F+ +F+
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 61
Query: 199 KELSTIDIPDMSIDACQAFLSYIY 222
+ + +I +S +A A + + Y
Sbjct: 62 DQQNVYEIDFVSAEALTALMDFAY 85
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 139 GITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKE 198
GI ++ L+ L T+G+ D++I HR+VLAA S F+ +F+
Sbjct: 12 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV 71
Query: 199 KELSTIDIPDMSIDACQAFLSYIY 222
+ + +I +S +A A + + Y
Sbjct: 72 DQQNVYEIDFVSAEALTALMDFAY 95
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 150 LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIP-D 208
L L +G++ D+ + + AHRAVLAA S FR +F++ + +++P
Sbjct: 21 LECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRS----AVVELPAA 76
Query: 209 MSIDACQAFLSYIYG-----NIEHEEFLTHRLALLR 239
+ + Q LS+ Y N+ ++ L + L+
Sbjct: 77 VQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQ 112
>pdb|3B8T|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
pdb|3B8T|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant P219a
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 106 EVPLTGKFIIDVEFLDLKIAPSD-GGEPCSIWAEGITQKR 144
EVP+ G+ +D+ +DL D G+P +W EG+ +R
Sbjct: 314 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVER 353
>pdb|3B8U|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
pdb|3B8U|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221a
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 106 EVPLTGKFIIDVEFLDLKIAPSD-GGEPCSIWAEGITQKR 144
EVP+ G+ +D+ +DL D G+P +W EG+ +R
Sbjct: 314 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVER 353
>pdb|3B8V|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
pdb|3B8V|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221k
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 106 EVPLTGKFIIDVEFLDLKIAPSD-GGEPCSIWAEGITQKR 144
EVP+ G+ +D+ +DL D G+P +W EG+ +R
Sbjct: 314 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVER 353
>pdb|2RJG|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJG|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase From
Escherichia Coli
pdb|2RJH|A Chain A, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|B Chain B, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|C Chain C, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
pdb|2RJH|D Chain D, Crystal Structure Of Biosynthetic Alaine Racemase In D-
Cycloserine-Bound Form From Escherichia Coli
Length = 379
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 106 EVPLTGKFIIDVEFLDLKIAPSD-GGEPCSIWAEGITQKR 144
EVP+ G+ +D+ +DL D G+P +W EG+ +R
Sbjct: 314 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVER 353
>pdb|3B8W|A Chain A, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|B Chain B, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|C Chain C, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
pdb|3B8W|D Chain D, Crystal Structure Of Escherichia Coli Alaine Racemase
Mutant E221p
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 106 EVPLTGKFIIDVEFLDLKIAPSD-GGEPCSIWAEGITQKR 144
EVP+ G+ +D+ +DL D G+P +W EG+ +R
Sbjct: 314 EVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVER 353
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 142 QKRSNATAL-ASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKE 200
Q S+ T L +M G D++I + AHR VLA S +F +F + +
Sbjct: 6 QNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---RNSQ 62
Query: 201 LSTIDIPDMSIDACQAFLSYIY 222
T+D +S Q L Y Y
Sbjct: 63 HYTLDF--LSPKTFQQILEYAY 82
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 142 QKRSNATAL-ASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKE 200
Q S+ T L +M G D++I + AHR VLA S +F +F + +
Sbjct: 7 QNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---RNSQ 63
Query: 201 LSTIDIPDMSIDACQAFLSYIY 222
T+D +S Q L Y Y
Sbjct: 64 HYTLDF--LSPKTFQQILEYAY 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,561,483
Number of Sequences: 62578
Number of extensions: 392175
Number of successful extensions: 759
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 21
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)