Query 020253
Match_columns 328
No_of_seqs 242 out of 2135
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:15:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 1.6E-28 3.5E-33 236.7 16.3 165 144-315 7-174 (557)
2 KOG4441 Proteins containing BT 100.0 1.2E-27 2.6E-32 230.0 15.3 177 143-325 17-195 (571)
3 PHA02790 Kelch-like protein; P 99.9 2.4E-27 5.3E-32 225.3 13.4 171 150-326 10-194 (480)
4 PHA03098 kelch-like protein; P 99.9 2.6E-26 5.6E-31 222.2 14.0 147 159-315 6-156 (534)
5 KOG4350 Uncharacterized conser 99.9 9.4E-26 2E-30 197.5 10.2 175 148-326 30-219 (620)
6 KOG2075 Topoisomerase TOP1-int 99.8 2.4E-19 5.1E-24 160.9 13.8 152 145-297 97-255 (521)
7 PF00651 BTB: BTB/POZ domain; 99.8 1E-19 2.2E-24 139.0 8.8 107 153-260 1-110 (111)
8 KOG4591 Uncharacterized conser 99.8 3.6E-19 7.9E-24 142.2 12.1 164 146-318 50-218 (280)
9 KOG4682 Uncharacterized conser 99.8 1.5E-18 3.3E-23 152.3 11.6 158 153-318 60-223 (488)
10 cd03772 MATH_HAUSP Herpesvirus 99.7 1.6E-17 3.5E-22 131.6 12.0 108 12-120 2-131 (137)
11 cd03775 MATH_Ubp21p Ubiquitin- 99.7 1.4E-17 3.1E-22 131.3 10.6 103 14-119 2-133 (134)
12 cd03774 MATH_SPOP Speckle-type 99.7 3.7E-17 8.1E-22 129.9 11.1 109 10-122 2-137 (139)
13 smart00225 BTB Broad-Complex, 99.7 1.7E-16 3.6E-21 115.7 8.4 90 164-254 1-90 (90)
14 cd03776 MATH_TRAF6 Tumor Necro 99.7 2.3E-16 5E-21 126.5 9.6 107 13-119 1-146 (147)
15 cd03773 MATH_TRIM37 Tripartite 99.7 6E-16 1.3E-20 121.9 9.7 106 11-119 3-129 (132)
16 cd03777 MATH_TRAF3 Tumor Necro 99.6 1.6E-15 3.4E-20 125.0 11.1 108 10-119 36-183 (186)
17 cd00270 MATH_TRAF_C Tumor Necr 99.6 2.3E-15 5E-20 121.1 10.1 107 13-119 1-148 (149)
18 KOG0783 Uncharacterized conser 99.6 1E-15 2.2E-20 145.0 7.6 138 162-299 710-854 (1267)
19 cd03781 MATH_TRAF4 Tumor Necro 99.6 7.1E-15 1.5E-19 118.5 10.2 69 13-81 1-89 (154)
20 cd03780 MATH_TRAF5 Tumor Necro 99.6 1.1E-14 2.5E-19 115.7 9.9 107 13-119 1-147 (148)
21 cd00121 MATH MATH (meprin and 99.5 7.7E-14 1.7E-18 108.3 11.8 104 13-119 1-125 (126)
22 cd03771 MATH_Meprin Meprin fam 99.5 1.1E-13 2.4E-18 111.6 10.6 67 13-79 2-85 (167)
23 cd03779 MATH_TRAF1 Tumor Necro 99.5 1.2E-13 2.7E-18 109.3 9.9 105 13-119 1-146 (147)
24 KOG1987 Speckle-type POZ prote 99.5 4.1E-13 8.8E-18 120.6 12.4 218 17-290 8-230 (297)
25 smart00061 MATH meprin and TRA 99.4 2.6E-12 5.6E-17 94.8 8.4 68 15-83 2-75 (95)
26 PF00917 MATH: MATH domain; I 99.3 6.2E-12 1.3E-16 96.9 7.6 99 19-120 1-118 (119)
27 cd03778 MATH_TRAF2 Tumor Necro 99.3 4.1E-11 8.9E-16 96.0 10.1 110 9-119 15-163 (164)
28 KOG0783 Uncharacterized conser 98.7 1.3E-08 2.8E-13 97.7 5.7 81 144-224 536-632 (1267)
29 COG5077 Ubiquitin carboxyl-ter 98.6 8.2E-08 1.8E-12 91.6 6.2 107 13-122 39-171 (1089)
30 KOG2716 Polymerase delta-inter 98.3 3E-06 6.4E-11 71.5 8.2 96 165-260 7-104 (230)
31 KOG2838 Uncharacterized conser 98.2 2.4E-06 5.2E-11 72.5 6.5 104 144-247 112-219 (401)
32 KOG2838 Uncharacterized conser 98.2 1.2E-06 2.6E-11 74.3 4.6 118 148-265 221-392 (401)
33 cd03783 MATH_Meprin_Alpha Mepr 98.2 1E-05 2.2E-10 64.9 9.5 67 14-80 3-88 (167)
34 KOG0511 Ankyrin repeat protein 98.2 1E-05 2.2E-10 71.8 8.9 124 172-297 301-435 (516)
35 PF02214 BTB_2: BTB/POZ domain 97.9 1E-05 2.2E-10 59.5 2.9 88 165-253 1-94 (94)
36 cd03782 MATH_Meprin_Beta Mepri 97.5 0.00033 7.2E-09 56.0 7.1 67 14-80 3-86 (167)
37 KOG3473 RNA polymerase II tran 97.1 0.0019 4.1E-08 46.1 6.2 81 165-246 19-112 (112)
38 PF11822 DUF3342: Domain of un 97.1 0.0014 3E-08 58.0 6.2 115 172-287 14-140 (317)
39 PF07707 BACK: BTB And C-termi 97.0 0.0013 2.9E-08 48.7 4.9 53 266-322 1-54 (103)
40 PF03931 Skp1_POZ: Skp1 family 96.9 0.0049 1.1E-07 41.3 6.2 55 165-222 3-58 (62)
41 smart00512 Skp1 Found in Skp1 96.7 0.0063 1.4E-07 45.4 6.7 58 165-223 4-63 (104)
42 KOG1724 SCF ubiquitin ligase, 96.2 0.034 7.3E-07 44.8 8.4 98 170-268 13-134 (162)
43 KOG1665 AFH1-interacting prote 96.0 0.013 2.9E-07 48.7 5.1 91 164-255 10-105 (302)
44 smart00875 BACK BTB And C-term 95.8 0.013 2.8E-07 43.0 3.8 46 266-315 1-47 (101)
45 KOG2714 SETA binding protein S 95.4 0.048 1E-06 49.9 6.8 94 164-257 12-111 (465)
46 KOG1778 CREB binding protein/P 95.4 0.0098 2.1E-07 53.2 2.3 134 164-297 28-163 (319)
47 KOG0511 Ankyrin repeat protein 95.3 0.01 2.3E-07 53.2 2.2 97 152-251 136-236 (516)
48 KOG2715 Uncharacterized conser 91.5 0.75 1.6E-05 36.8 6.2 97 163-260 21-121 (210)
49 COG5201 SKP1 SCF ubiquitin lig 89.4 3.8 8.2E-05 31.3 8.1 99 165-266 4-127 (158)
50 PF01466 Skp1: Skp1 family, di 86.9 1 2.2E-05 31.5 3.7 43 232-274 14-59 (78)
51 KOG1863 Ubiquitin carboxyl-ter 85.6 1 2.2E-05 47.8 4.4 91 27-120 42-150 (1093)
52 KOG2075 Topoisomerase TOP1-int 76.6 6.9 0.00015 36.9 5.9 35 261-295 185-220 (521)
53 PF07707 BACK: BTB And C-termi 76.4 6.6 0.00014 28.5 4.9 59 235-293 2-75 (103)
54 KOG3840 Uncharaterized conserv 72.3 4.8 0.0001 35.6 3.6 88 160-247 93-185 (438)
55 PF00651 BTB: BTB/POZ domain; 66.0 10 0.00022 27.8 4.0 28 263-290 81-108 (111)
56 PF11822 DUF3342: Domain of un 66.0 2.7 5.9E-05 37.6 0.9 54 260-317 71-125 (317)
57 KOG2723 Uncharacterized conser 62.9 11 0.00025 31.9 4.0 93 162-255 7-104 (221)
58 PHA03098 kelch-like protein; P 46.9 29 0.00063 33.7 4.6 30 261-290 73-102 (534)
59 KOG0297 TNF receptor-associate 43.2 18 0.0004 33.8 2.4 69 10-78 277-365 (391)
60 smart00875 BACK BTB And C-term 39.8 27 0.00059 24.8 2.5 26 235-260 2-27 (101)
61 PF09593 Pathogen_betaC1: Beta 39.1 17 0.00036 27.6 1.2 58 170-229 20-80 (117)
62 PF02637 GatB_Yqey: GatB domai 39.0 1.9E+02 0.0041 22.7 8.5 78 204-299 33-113 (148)
63 PHA02790 Kelch-like protein; P 36.6 50 0.0011 31.8 4.3 30 232-261 123-152 (480)
64 KOG4682 Uncharacterized conser 35.5 32 0.0007 31.9 2.6 30 232-261 173-202 (488)
65 PHA02713 hypothetical protein; 27.7 1E+02 0.0023 30.3 5.0 31 260-290 90-120 (557)
66 PF08922 DUF1905: Domain of un 27.4 1.1E+02 0.0023 21.4 3.7 23 34-56 38-60 (80)
67 PF06887 DUF1265: Protein of u 24.1 74 0.0016 19.7 2.0 33 263-295 10-44 (48)
68 COG5513 Predicted secreted pro 20.9 2.8E+02 0.0061 20.8 4.8 17 28-44 31-47 (113)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-28 Score=236.70 Aligned_cols=165 Identities=19% Similarity=0.333 Sum_probs=151.6
Q ss_pred CChhHHHHHHHHHhcCCCcccEEEEeC-CeEEehhHHHHhccCHHHHHhccCcccccC-cceEEcCCCCHHHHHHHhhhh
Q 020253 144 RSNATALASLGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHDLKEKE-LSTIDIPDMSIDACQAFLSYI 221 (328)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Dv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~-~~~v~l~~~~~~~f~~ll~~i 221 (328)
.+...+++.+.+|+.++.++||+|.++ |+.|+|||.|||++|+||++||.++|+|.. +++|+|+++++++|+.+|+|+
T Consensus 7 ~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~ 86 (557)
T PHA02713 7 KHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYL 86 (557)
T ss_pred hhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHh
Confidence 345678899999999999999999998 899999999999999999999999999874 789999999999999999999
Q ss_pred cCCccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhcccc
Q 020253 222 YGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRD 300 (328)
Q Consensus 222 Y~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~ 300 (328)
||+. ++ .+++.+||.+|+.|+++.|++.|++||.+.++++||+.++.+|..+.+..|.+.|.+|+. ||.++.+
T Consensus 87 Yt~~-i~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~--- 160 (557)
T PHA02713 87 YNRH-IS--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT--- 160 (557)
T ss_pred cCCC-CC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC---
Confidence 9985 33 389999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred chHHHHhhCcHHHHH
Q 020253 301 DFSVFLQCADRELIA 315 (328)
Q Consensus 301 ~~~~~~~~~~~~l~~ 315 (328)
.++|++++..++..
T Consensus 161 -~~ef~~L~~~~l~~ 174 (557)
T PHA02713 161 -TDAFKKTVFEILFD 174 (557)
T ss_pred -ChhhhhCCHHHHHH
Confidence 78888777555543
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=230.04 Aligned_cols=177 Identities=28% Similarity=0.379 Sum_probs=163.5
Q ss_pred cCChhHHHHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhc
Q 020253 143 KRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY 222 (328)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY 222 (328)
..+...+++.+..+++.+.++||++.+++++|+|||.|||+.||||++||.++++|+.+.+|.|.+++++.++.+|+|+|
T Consensus 17 ~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Y 96 (571)
T KOG4441|consen 17 PSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAY 96 (571)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhh
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-ccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhcccc
Q 020253 223 GN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRD 300 (328)
Q Consensus 223 ~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~ 300 (328)
|+ +.++. +++++||.+|+.||++.+.+.|.+||.+++++.||+.+..+|+.|++..|.+.+..|+. ||.++..
T Consensus 97 t~~i~i~~--~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~--- 171 (571)
T KOG4441|consen 97 TGKLEISE--DNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSK--- 171 (571)
T ss_pred cceEEech--HhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc---
Confidence 98 55555 99999999999999999999999999999999999999999999999999999999999 9999998
Q ss_pred chHHHHhhCcHHHHHHHHHHHhhcc
Q 020253 301 DFSVFLQCADRELIAEVFHEVLGAW 325 (328)
Q Consensus 301 ~~~~~~~~~~~~l~~~l~~~~l~~~ 325 (328)
.++|++++..++...|-++-|++.
T Consensus 172 -~eefl~L~~~~l~~ll~~d~l~v~ 195 (571)
T KOG4441|consen 172 -TEEFLLLSLEELIGLLSSDDLNVD 195 (571)
T ss_pred -cHHhhCCCHHHHHhhccccCCCcC
Confidence 899999887777776555555443
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=225.34 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=146.0
Q ss_pred HHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEc--CCCCHHHHHHHhhhhcCC-cc
Q 020253 150 LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI--PDMSIDACQAFLSYIYGN-IE 226 (328)
Q Consensus 150 ~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l--~~~~~~~f~~ll~~iY~~-~~ 226 (328)
-+++-.+...+.++||++.+|+ +|+|||.|||+.||||++||.++|+|+++ +|.+ .++++++++.+|+|+||+ +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 3456667778899999987764 89999999999999999999999999965 5665 499999999999999997 55
Q ss_pred ccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHH
Q 020253 227 HEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVF 305 (328)
Q Consensus 227 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~ 305 (328)
++. ++++++|.+|+.|+++.+++.|++||.++++++||+.++.+|+.|++.+|++.|.+||. ||.++.+ ...++|
T Consensus 88 it~--~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~--~~~~ef 163 (480)
T PHA02790 88 IDS--HNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELED--DIIDNF 163 (480)
T ss_pred Eec--ccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhc--ccchhh
Confidence 555 89999999999999999999999999999999999999999999999999999999999 9999976 112677
Q ss_pred HhhCcHHHHH----------HHHHHHhhccc
Q 020253 306 LQCADRELIA----------EVFHEVLGAWK 326 (328)
Q Consensus 306 ~~~~~~~l~~----------~l~~~~l~~~~ 326 (328)
+.++..+++. +++++++.|.+
T Consensus 164 ~~L~~~~lLssd~L~v~~Ee~V~eav~~Wl~ 194 (480)
T PHA02790 164 DYLSMKLILESDELNVPDEDYVVDFVIKWYM 194 (480)
T ss_pred hhCCHHHhcccccCCCccHHHHHHHHHHHHH
Confidence 7665444443 37777777654
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=2.6e-26 Score=222.18 Aligned_cols=147 Identities=22% Similarity=0.348 Sum_probs=135.4
Q ss_pred CCCcccEEEEe--CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCc-cccccHHHHH
Q 020253 159 EGIHTDIIINA--SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNI-EHEEFLTHRL 235 (328)
Q Consensus 159 ~~~~~Dv~l~v--~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~-~~~~~~~~~~ 235 (328)
++.+|||+|.+ +|++|+|||.+|+++|+||++||.++++ +.+|.|++ ++++|+.+|+|+||+. ..+. +++.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~--~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITS--NNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcH--HHHH
Confidence 78899999998 9999999999999999999999999888 67899999 9999999999999984 4444 8899
Q ss_pred HHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHHHhhCcHHHH
Q 020253 236 ALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELI 314 (328)
Q Consensus 236 ~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~~~~~~~~l~ 314 (328)
+||.+|++|+++.|+..|+++|.+.++.+||+.++.+|+.|++..|++.|.+||. ||.++.+ .++|.+++...+.
T Consensus 80 ~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~----~~~f~~l~~~~l~ 155 (534)
T PHA03098 80 DILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYN----DPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhc----CchhhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 9999988 7788888755554
Q ss_pred H
Q 020253 315 A 315 (328)
Q Consensus 315 ~ 315 (328)
.
T Consensus 156 ~ 156 (534)
T PHA03098 156 K 156 (534)
T ss_pred H
Confidence 4
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.93 E-value=9.4e-26 Score=197.46 Aligned_cols=175 Identities=26% Similarity=0.375 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCC-cc
Q 020253 148 TALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGN-IE 226 (328)
Q Consensus 148 ~~~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~-~~ 226 (328)
.+.++++.++-+++++||+|++++++|+|||.|||+||.||++|+.|+|+|+.+..|.|++.+.++|+.+|+|||++ +.
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~ 109 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKID 109 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhccee
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999987 22
Q ss_pred c-cccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHH
Q 020253 227 H-EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSV 304 (328)
Q Consensus 227 ~-~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~ 304 (328)
. ....+.+++.|.+|++|+++.|.....+||++.+..+|++.++..|..|++.+|...|+-|+. |-.++.. .+.
T Consensus 110 l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~----~~s 185 (620)
T KOG4350|consen 110 LAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLE----DPS 185 (620)
T ss_pred cccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhc----Ccc
Confidence 2 222366789999999999999999999999999999999999999999999999999999999 8888877 566
Q ss_pred HHhhCcHHHHH------------HHHHHHhhccc
Q 020253 305 FLQCADRELIA------------EVFHEVLGAWK 326 (328)
Q Consensus 305 ~~~~~~~~l~~------------~l~~~~l~~~~ 326 (328)
|..+....+.. .+|-++++|.+
T Consensus 186 Fn~LSk~sL~e~l~RDsFfApE~~IFlAv~~W~~ 219 (620)
T KOG4350|consen 186 FNRLSKDSLKELLARDSFFAPELKIFLAVRSWHQ 219 (620)
T ss_pred hhhhhHHHHHHHHhhhcccchHHHHHHHHHHHHh
Confidence 66665444433 35556666544
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=2.4e-19 Score=160.91 Aligned_cols=152 Identities=26% Similarity=0.371 Sum_probs=136.4
Q ss_pred ChhHHHHHHHHHhcCCCcccEEEEeCC-----eEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhh
Q 020253 145 SNATALASLGRMLTEGIHTDIIINASN-----GSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLS 219 (328)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~Dv~l~v~~-----~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~ 219 (328)
+.+++.+....+++++..+|+.|+|++ +.+++||.+||..|.+|.+||++++.+....+|.++|+++.+|..+|+
T Consensus 97 ~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~ 176 (521)
T KOG2075|consen 97 QKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLR 176 (521)
T ss_pred chhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHH
Confidence 345778889999999999999999974 489999999999999999999999999988999999999999999999
Q ss_pred hhcCCccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHH-HHhcCChHHHHHHHHHHH-hhhhhhc
Q 020253 220 YIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQN-AYLYQLPKLKSSCMRYLV-KFGKIFD 297 (328)
Q Consensus 220 ~iY~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~-A~~~~~~~L~~~~~~~i~-~~~~v~~ 297 (328)
|+|++..... .++++.+|.+|++|.++.|.+.|.++|..++...|.+..+-- |..++-++|...|++-|. ++.....
T Consensus 177 flYsdev~~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~ 255 (521)
T KOG2075|consen 177 FLYSDEVKLA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALT 255 (521)
T ss_pred HHhcchhhhh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhC
Confidence 9999843333 389999999999999999999999999999888887665555 999999999999999999 8877765
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.81 E-value=1e-19 Score=139.01 Aligned_cols=107 Identities=36% Similarity=0.575 Sum_probs=92.5
Q ss_pred HHHHhcCCCcccEEEEeC-CeEEehhHHHHhccCHHHHHhccCc-ccccCcceEEcCCCCHHHHHHHhhhhcCC-ccccc
Q 020253 153 LGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHD-LKEKELSTIDIPDMSIDACQAFLSYIYGN-IEHEE 229 (328)
Q Consensus 153 ~~~~~~~~~~~Dv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~-~~e~~~~~v~l~~~~~~~f~~ll~~iY~~-~~~~~ 229 (328)
|.++++++.++|++|.++ +++|+|||.+|+++|+||+.||.++ +.+....++.++++++++|+.+++|+|++ ....
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~- 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN- 79 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC-
Confidence 457788899999999999 7999999999999999999999998 56777678999999999999999999987 3333
Q ss_pred cHHHHHHHHHhccccChHhHHHHHHHHHHhc
Q 020253 230 FLTHRLALLRAADKYDICDLKEACHDSLVED 260 (328)
Q Consensus 230 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 260 (328)
..+++.+++.+|++|+++.|+..|+++|.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 2388999999999999999999999999865
No 8
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=3.6e-19 Score=142.23 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHhcCCCcccEEEEeCC---eEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhc
Q 020253 146 NATALASLGRMLTEGIHTDIIINASN---GSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY 222 (328)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~Dv~l~v~~---~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY 222 (328)
++.++.-...+++.+.++|++|.++| +.+++||.+||+||.+++- .++ ...++.+..+.|.++++|...++|||
T Consensus 50 ~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf--aN~-~dekse~~~~dDad~Ea~~t~iRWIY 126 (280)
T KOG4591|consen 50 ISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF--ANG-GDEKSEELDLDDADFEAFHTAIRWIY 126 (280)
T ss_pred HHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh--ccC-CCcchhhhcccccCHHHHHHhheeee
Confidence 35667777889999999999999984 5899999999999998873 222 22334678889999999999999999
Q ss_pred CC-ccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhcccc
Q 020253 223 GN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRD 300 (328)
Q Consensus 223 ~~-~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~ 300 (328)
|+ +........+.++.++|.+|+++-|+..|++-+...++++||+.++++|++.++.+|...|-+.|+ +|+++-.
T Consensus 127 TDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~--- 203 (280)
T KOG4591|consen 127 TDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK--- 203 (280)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh---
Confidence 97 333333478899999999999999999999999999999999999999999999999999999999 9988842
Q ss_pred chHHHHhhCcHHHHHHHH
Q 020253 301 DFSVFLQCADRELIAEVF 318 (328)
Q Consensus 301 ~~~~~~~~~~~~l~~~l~ 318 (328)
.+|. .+++.++-.|+
T Consensus 204 --a~Fa-qMs~aLLYklI 218 (280)
T KOG4591|consen 204 --ADFA-QMSAALLYKLI 218 (280)
T ss_pred --HHHH-hccHHHHHHHH
Confidence 3344 44466666544
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.78 E-value=1.5e-18 Score=152.33 Aligned_cols=158 Identities=22% Similarity=0.391 Sum_probs=142.7
Q ss_pred HHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcC----CCCHHHHHHHhhhhcCC-ccc
Q 020253 153 LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIP----DMSIDACQAFLSYIYGN-IEH 227 (328)
Q Consensus 153 ~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~----~~~~~~f~~ll~~iY~~-~~~ 227 (328)
+..++.+++.+||++.+-|++.++||..|. +|+||++||.|.++|++++.|.|+ .++..+|...+.-+|.+ +.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 466888999999999999999999999998 999999999999999999987764 78999999999999975 666
Q ss_pred cccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHHH
Q 020253 228 EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFL 306 (328)
Q Consensus 228 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~~ 306 (328)
.. +.+..+|++|..+++++|.+.|.+.+++.+++++++..++.|.+|++..+++.|++++. |+-.+.. .. .+
T Consensus 139 ~l--~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~----~q-~l 211 (488)
T KOG4682|consen 139 KL--SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQN----VQ-LL 211 (488)
T ss_pred cH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhh----HH-HH
Confidence 65 88999999999999999999999999999999999999999999999999999999999 7766654 33 77
Q ss_pred hhCcHHHHHHHH
Q 020253 307 QCADRELIAEVF 318 (328)
Q Consensus 307 ~~~~~~l~~~l~ 318 (328)
.+.+.++|..|+
T Consensus 212 ~ei~~~Lm~~ll 223 (488)
T KOG4682|consen 212 KEISINLMKQLL 223 (488)
T ss_pred HhcCHHHHHHHh
Confidence 777888887765
No 10
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.75 E-value=1.6e-17 Score=131.62 Aligned_cols=108 Identities=9% Similarity=0.166 Sum_probs=77.7
Q ss_pred ceeEEEEEccCCC-CceeecCCceecCeeEEEEEEeCCc-------eEEEEeeccccc--CCCCCcEEEEEEEEEecCCC
Q 020253 12 SRLAQWRIDNLAS-CSYRKSDPFKIGKWNWHLSLEKNRM-------LFVKLYPEVSNL--TRDNPPIASFIIRVVSSVGD 81 (328)
Q Consensus 12 ~~~~~w~I~~~~~-g~~~~S~~F~vgg~~W~l~~yp~g~-------~~vsL~~~~~~~--~~~w~v~a~f~~~l~~~~~~ 81 (328)
.++|+|+|+||+. ++.+.|++|.+||++|+|.+||+|. .++++||...+. ...|++.|+|+|+|+|+.+.
T Consensus 2 ~~~~~~~I~~~S~l~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~ 81 (137)
T cd03772 2 EATFSFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDD 81 (137)
T ss_pred CcEEEEEECCcccCCCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCC
Confidence 5899999999986 6789999999999999999999881 456665554332 34799999999999999864
Q ss_pred CccccCccccccccccCCceeee-------e-----eceeccceeeeeeee
Q 020253 82 RKALSHPEITDRQLKNNDDFVWA-------I-----EVPLTGKFIIDVEFL 120 (328)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~wg-------~-----~~~~~~~l~ve~~v~ 120 (328)
.....+... ..+......+||. + +|+++|+++|||+|+
T Consensus 82 ~~~~~~~~~-~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~ 131 (137)
T cd03772 82 EPSFSRRIS-HLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQ 131 (137)
T ss_pred cccEEEeee-eEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEE
Confidence 433322211 1222222333332 1 388999999999994
No 11
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.74 E-value=1.4e-17 Score=131.34 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=77.7
Q ss_pred eEEEEEccCCC-CceeecCCceecCeeEEEEEEeCCc---eEEEEeeccccc-------CCCCCcEEEEEEEEEecCCCC
Q 020253 14 LAQWRIDNLAS-CSYRKSDPFKIGKWNWHLSLEKNRM---LFVKLYPEVSNL-------TRDNPPIASFIIRVVSSVGDR 82 (328)
Q Consensus 14 ~~~w~I~~~~~-g~~~~S~~F~vgg~~W~l~~yp~g~---~~vsL~~~~~~~-------~~~w~v~a~f~~~l~~~~~~~ 82 (328)
+|.|+|+||+. ++.+.|++|.||||+|+|.+||+|. .+|||||.+.+. +.+|.+.|+|+|+|+|+.++.
T Consensus 2 ~f~w~I~~fS~~~~~~~S~~F~vGG~~W~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~ 81 (134)
T cd03775 2 SFTWRIKNWSELEKKVHSPKFKCGGFEWRILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPS 81 (134)
T ss_pred cEEEEECCcccCCcceeCCCEEECCeeEEEEEeCCCCCCCCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCc
Confidence 58999999986 6789999999999999999999993 579999876442 247889999999999997655
Q ss_pred ccccCccccccccccCCceeeee------------------eceeccceeeeeee
Q 020253 83 KALSHPEITDRQLKNNDDFVWAI------------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~wg~------------------~~~~~~~l~ve~~v 119 (328)
....+. ..+.|.. .+..||+ +|++||+++|++.|
T Consensus 82 ~~~~~~--~~~~F~~-~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 82 IQLSNV--AHHRFNA-EDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred cceEcc--ceeEeCC-CCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 333322 1223332 2234552 28889999999887
No 12
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.73 E-value=3.7e-17 Score=129.90 Aligned_cols=109 Identities=16% Similarity=0.253 Sum_probs=81.7
Q ss_pred ccceeEEEEEccCCC-----CceeecCCceecCe---eEEEEEEeCC-----ceEEEEeecccccCCCCCcEEEEEEEEE
Q 020253 10 TTSRLAQWRIDNLAS-----CSYRKSDPFKIGKW---NWHLSLEKNR-----MLFVKLYPEVSNLTRDNPPIASFIIRVV 76 (328)
Q Consensus 10 ~~~~~~~w~I~~~~~-----g~~~~S~~F~vgg~---~W~l~~yp~g-----~~~vsL~~~~~~~~~~w~v~a~f~~~l~ 76 (328)
+...+|.|+|+||+. |++++|++|.+||+ +|+|++||+| ..++||||.+.+. ..+++.|+|+|+++
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~-~~~~v~a~f~~~l~ 80 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-PKSEVRAKFKFSIL 80 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccC-CCCcEEEEEEEEEE
Confidence 567899999999984 77899999999995 9999999998 2579999987543 35789999999999
Q ss_pred ecCCCCccccCccccccccccCCceeeee--------------eceeccceeeeeeeeee
Q 020253 77 SSVGDRKALSHPEITDRQLKNNDDFVWAI--------------EVPLTGKFIIDVEFLDL 122 (328)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~wg~--------------~~~~~~~l~ve~~v~~~ 122 (328)
|+.|.+......... ..|.... .||+ +|++||+++|+|+|.++
T Consensus 81 n~~~~~~~~~~~~~~-~~f~~~~--~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~ 137 (139)
T cd03774 81 NAKGEETKAMESQRA-YRFVQGK--DWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVV 137 (139)
T ss_pred ecCCCeeeeecccCc-EeCCCCC--ccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEE
Confidence 999865322211111 2233233 4553 27789999999999664
No 13
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.68 E-value=1.7e-16 Score=115.71 Aligned_cols=90 Identities=34% Similarity=0.464 Sum_probs=81.2
Q ss_pred cEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHHHhccc
Q 020253 164 DIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADK 243 (328)
Q Consensus 164 Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~A~~ 243 (328)
|+++.++|+.|++||.+|+++|+||++||.+++.+.....+.+++.++++|+.+|+|+|++..... ..++.+++.+|+.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~-~~~~~~l~~~a~~ 79 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLP-EENVEELLELADY 79 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecC-HHHHHHHHHHHHH
Confidence 789999999999999999999999999999988887888999999999999999999999743222 2588999999999
Q ss_pred cChHhHHHHHH
Q 020253 244 YDICDLKEACH 254 (328)
Q Consensus 244 ~~~~~l~~~c~ 254 (328)
|+++.|.+.|+
T Consensus 80 ~~~~~l~~~c~ 90 (90)
T smart00225 80 LQIPGLVELCE 90 (90)
T ss_pred HCcHHHHhhhC
Confidence 99999999884
No 14
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.67 E-value=2.3e-16 Score=126.46 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=75.3
Q ss_pred eeEEEEEccCCC-------Cc--eeecCCcee--cCeeEEEEEEeCC-----ceEEEEeeccccc----CCCCCcEEEEE
Q 020253 13 RLAQWRIDNLAS-------CS--YRKSDPFKI--GKWNWHLSLEKNR-----MLFVKLYPEVSNL----TRDNPPIASFI 72 (328)
Q Consensus 13 ~~~~w~I~~~~~-------g~--~~~S~~F~v--gg~~W~l~~yp~g-----~~~vsL~~~~~~~----~~~w~v~a~f~ 72 (328)
|+|.|+|+||+. |+ .+.|++|.+ |||+|+|++||+| ..+|++|+.+... ...|++.|+|+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 689999999972 44 388999985 7999999999999 2578888877543 23699999999
Q ss_pred EEEEecCCCCcccc----C-c--cccccccccCCceeeee------------eceeccceeeeeee
Q 020253 73 IRVVSSVGDRKALS----H-P--EITDRQLKNNDDFVWAI------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 73 ~~l~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~wg~------------~~~~~~~l~ve~~v 119 (328)
|+|+|+.|...... . . ..|.+......+.+||+ .|+.||+++|+|+|
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V 146 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEV 146 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEE
Confidence 99999987543211 1 1 11211100012234553 28899999999998
No 15
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.65 E-value=6e-16 Score=121.90 Aligned_cols=106 Identities=13% Similarity=0.253 Sum_probs=77.6
Q ss_pred cceeEEEEEccCC----CCceeecCCceecCeeEEEEEEeCC-----ceEEEEeecccccCCCCCcEEEEEEEEEecCCC
Q 020253 11 TSRLAQWRIDNLA----SCSYRKSDPFKIGKWNWHLSLEKNR-----MLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGD 81 (328)
Q Consensus 11 ~~~~~~w~I~~~~----~g~~~~S~~F~vgg~~W~l~~yp~g-----~~~vsL~~~~~~~~~~w~v~a~f~~~l~~~~~~ 81 (328)
.-++++|+|+||+ .|+++.|++|.+||++|+|.+||+| ..+++||+...+. ..|.+.++|+++|+|+.+.
T Consensus 3 ~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~-~~~~~~~~~~l~llnq~~~ 81 (132)
T cd03773 3 PYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG-LGEASKYEYRVEMVHQANP 81 (132)
T ss_pred CCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC-CCCceeEEEEEEEEcCCCC
Confidence 3467999999998 4678999999999999999999999 2479999987553 3477888999999998543
Q ss_pred CccccCccccccccccCCceeee-e---------eceec--cceeeeeee
Q 020253 82 RKALSHPEITDRQLKNNDDFVWA-I---------EVPLT--GKFIIDVEF 119 (328)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~wg-~---------~~~~~--~~l~ve~~v 119 (328)
....... ..+.|....+|||. + +|+.+ |+++|+|.|
T Consensus 82 ~~~~~~~--~~~~f~~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 82 TKNIKRE--FASDFEVGECWGYNRFFRLDLLINEGYLLPENDTLILRFSV 129 (132)
T ss_pred ccceEEe--ccccccCCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEE
Confidence 3222221 22233323343433 1 38888 999999998
No 16
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.64 E-value=1.6e-15 Score=124.97 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=79.0
Q ss_pred ccceeEEEEEccCC-------CCc--eeecCCceec--CeeEEEEEEeCCc-----eEEEEeecccccCC-----CCCcE
Q 020253 10 TTSRLAQWRIDNLA-------SCS--YRKSDPFKIG--KWNWHLSLEKNRM-----LFVKLYPEVSNLTR-----DNPPI 68 (328)
Q Consensus 10 ~~~~~~~w~I~~~~-------~g~--~~~S~~F~vg--g~~W~l~~yp~g~-----~~vsL~~~~~~~~~-----~w~v~ 68 (328)
.-+|+|.|+|+||+ .|+ ++.|++|.+| ||+|+|++||||. .+||+|+.+.. .. .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~-ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMR-GEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEec-CCcccccCCcee
Confidence 34799999999996 355 7999999999 9999999999993 37888888754 23 79999
Q ss_pred EEEEEEEEecCCCCcccc-------CccccccccccCCceeeee------------eceeccceeeeeee
Q 020253 69 ASFIIRVVSSVGDRKALS-------HPEITDRQLKNNDDFVWAI------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 69 a~f~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~wg~------------~~~~~~~l~ve~~v 119 (328)
++++|.|+|+.+...... ....|++... ..+.+||+ .|+.||+++|+|.|
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~-~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v 183 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTG-EMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIV 183 (186)
T ss_pred EEEEEEEEcCCCccccccceeccCCccccccCCcc-CCCCCCCchheeEHHHhccCCcEeCCEEEEEEEE
Confidence 999999999986321110 0111221111 11335674 38899999999988
No 17
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.62 E-value=2.3e-15 Score=121.09 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=75.9
Q ss_pred eeEEEEEccCCC---------CceeecCCceec--CeeEEEEEEeCCc-----eEEEEeeccccc----CCCCCcEEEEE
Q 020253 13 RLAQWRIDNLAS---------CSYRKSDPFKIG--KWNWHLSLEKNRM-----LFVKLYPEVSNL----TRDNPPIASFI 72 (328)
Q Consensus 13 ~~~~w~I~~~~~---------g~~~~S~~F~vg--g~~W~l~~yp~g~-----~~vsL~~~~~~~----~~~w~v~a~f~ 72 (328)
|+|.|+|+||+. +++++|+.|.+| ||+|+|++||+|. .+++||+.+.+. ...|++.|+|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 689999999853 468999999999 9999999999983 479998876443 24699999999
Q ss_pred EEEEecCCC--CccccCc---cccccccc----cCCceeeee------------eceeccceeeeeee
Q 020253 73 IRVVSSVGD--RKALSHP---EITDRQLK----NNDDFVWAI------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 73 ~~l~~~~~~--~~~~~~~---~~~~~~~~----~~~~~~wg~------------~~~~~~~l~ve~~v 119 (328)
|+|+|+.++ .+..... ......|. .....+||+ +|++||+++|+|+|
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 999999874 2211000 00001111 012234553 28899999999997
No 18
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.61 E-value=1e-15 Score=145.04 Aligned_cols=138 Identities=24% Similarity=0.415 Sum_probs=118.6
Q ss_pred cccEEEEe-CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCc-----cccccHHHHH
Q 020253 162 HTDIIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNI-----EHEEFLTHRL 235 (328)
Q Consensus 162 ~~Dv~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~-----~~~~~~~~~~ 235 (328)
.-|+.+.. +|+.+.|||++|++|++||..||...+.|+..-.+.+-.+..+.++.+|+|+|++. ......+.+-
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 34666655 66679999999999999999999999999887666666677999999999999541 1222236688
Q ss_pred HHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccc
Q 020253 236 ALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIR 299 (328)
Q Consensus 236 ~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~ 299 (328)
++|.+||.|-+.+|+..|+..|.+.++..++.+++++|..|++..|+..|++||+ |...+.+.+
T Consensus 790 ~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lear 854 (1267)
T KOG0783|consen 790 EILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEAR 854 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999 888777633
No 19
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.59 E-value=7.1e-15 Score=118.54 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=58.2
Q ss_pred eeEEEEEccCC---------CCceeecCCceec--CeeEEEEEEeCC-----ceEEEEeeccccc-C---CCCCcEEEEE
Q 020253 13 RLAQWRIDNLA---------SCSYRKSDPFKIG--KWNWHLSLEKNR-----MLFVKLYPEVSNL-T---RDNPPIASFI 72 (328)
Q Consensus 13 ~~~~w~I~~~~---------~g~~~~S~~F~vg--g~~W~l~~yp~g-----~~~vsL~~~~~~~-~---~~w~v~a~f~ 72 (328)
|.|.|+|+||+ .|+.+.|++|.+| ||+|+|++|||| ..+|++|+.+... . -.|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 68999999984 2478999999999 999999999999 2468888877542 1 3799999999
Q ss_pred EEEEecCCC
Q 020253 73 IRVVSSVGD 81 (328)
Q Consensus 73 ~~l~~~~~~ 81 (328)
|+|+++.+.
T Consensus 81 ~~llDq~~~ 89 (154)
T cd03781 81 FTLLDQSDP 89 (154)
T ss_pred EEEECCCCC
Confidence 999999874
No 20
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.58 E-value=1.1e-14 Score=115.74 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=77.0
Q ss_pred eeEEEEEccCC-------CCc--eeecCCc--eecCeeEEEEEEeCCc-----eEEEEeeccccc----CCCCCcEEEEE
Q 020253 13 RLAQWRIDNLA-------SCS--YRKSDPF--KIGKWNWHLSLEKNRM-----LFVKLYPEVSNL----TRDNPPIASFI 72 (328)
Q Consensus 13 ~~~~w~I~~~~-------~g~--~~~S~~F--~vgg~~W~l~~yp~g~-----~~vsL~~~~~~~----~~~w~v~a~f~ 72 (328)
|.+.|+|+||+ .|+ ++.|++| .+|||+|+|++||||. .+||+|+.+... -..|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 67999999985 466 7999999 9999999999999993 378888887541 14799999999
Q ss_pred EEEEecCCCCcccc--Ccc-ccccccccC---Cceeeee--------------eceeccceeeeeee
Q 020253 73 IRVVSSVGDRKALS--HPE-ITDRQLKNN---DDFVWAI--------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 73 ~~l~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~wg~--------------~~~~~~~l~ve~~v 119 (328)
|+|+||.+.+.... ... .....|... .+.+||+ .|+.||+++|+|.|
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 99999987653211 110 001112111 1334663 37789999999977
No 21
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.54 E-value=7.7e-14 Score=108.33 Aligned_cols=104 Identities=19% Similarity=0.370 Sum_probs=75.4
Q ss_pred eeEEEEEccCCC--CceeecCCceecCeeEEEEEEeCCc----eEEEEeecccccC---CCCCcEEEEEEEEEecCCCC-
Q 020253 13 RLAQWRIDNLAS--CSYRKSDPFKIGKWNWHLSLEKNRM----LFVKLYPEVSNLT---RDNPPIASFIIRVVSSVGDR- 82 (328)
Q Consensus 13 ~~~~w~I~~~~~--g~~~~S~~F~vgg~~W~l~~yp~g~----~~vsL~~~~~~~~---~~w~v~a~f~~~l~~~~~~~- 82 (328)
++|.|+|.+|+. ++.+.|++|.+||+.|+|.+||+|. .++++||...... ..|++.|+|+++|+++++.+
T Consensus 1 ~~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 1 GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred CEEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCCCCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 479999999985 8899999999999999999999984 2677776654433 46999999999999998333
Q ss_pred ccccCcccccccc-ccCCceeee-e--------ec-eeccceeeeeee
Q 020253 83 KALSHPEITDRQL-KNNDDFVWA-I--------EV-PLTGKFIIDVEF 119 (328)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~wg-~--------~~-~~~~~l~ve~~v 119 (328)
...... . .++ ....++||. + .+ ++||+++|+|+|
T Consensus 81 ~~~~~~--~-~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v 125 (126)
T cd00121 81 LSKSFT--H-VFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEV 125 (126)
T ss_pred ceEecc--C-CcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEE
Confidence 222111 1 121 223444443 1 13 789999999988
No 22
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.51 E-value=1.1e-13 Score=111.56 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=55.5
Q ss_pred eeEEEEEccCCC-------CceeecCCc-eecCeeEEEEEEeCCc----eEEEEeeccccc----CCCCC-cEEEEEEEE
Q 020253 13 RLAQWRIDNLAS-------CSYRKSDPF-KIGKWNWHLSLEKNRM----LFVKLYPEVSNL----TRDNP-PIASFIIRV 75 (328)
Q Consensus 13 ~~~~w~I~~~~~-------g~~~~S~~F-~vgg~~W~l~~yp~g~----~~vsL~~~~~~~----~~~w~-v~a~f~~~l 75 (328)
..|.|+|+||+. |+.+.|++| .+|||+|+|++||+|. .++|||+.+... ...|+ +.|+++++|
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~~L 81 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQATMTL 81 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEEEEEEE
Confidence 469999999974 457999998 9999999999999994 368888877442 23588 689999999
Q ss_pred EecC
Q 020253 76 VSSV 79 (328)
Q Consensus 76 ~~~~ 79 (328)
+||.
T Consensus 82 lDQ~ 85 (167)
T cd03771 82 LDQD 85 (167)
T ss_pred ECCC
Confidence 9996
No 23
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.50 E-value=1.2e-13 Score=109.28 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=75.8
Q ss_pred eeEEEEEccCC-------CC--ceeecCCceec--CeeEEEEEEeCCc-----eEEEEeecccccCC-----CCCcEEEE
Q 020253 13 RLAQWRIDNLA-------SC--SYRKSDPFKIG--KWNWHLSLEKNRM-----LFVKLYPEVSNLTR-----DNPPIASF 71 (328)
Q Consensus 13 ~~~~w~I~~~~-------~g--~~~~S~~F~vg--g~~W~l~~yp~g~-----~~vsL~~~~~~~~~-----~w~v~a~f 71 (328)
|.+.|+|+||+ .| ..+.||+|..+ ||+|+|++||||. .+|++|+.+.. .. .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~-g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMK-GEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEec-CCcccccCcceEEEE
Confidence 68999999996 23 36999999887 9999999999992 47888888754 23 79999999
Q ss_pred EEEEEecCCCCccc-c-Cc----cccccccccCCceeeee--------------eceeccceeeeeee
Q 020253 72 IIRVVSSVGDRKAL-S-HP----EITDRQLKNNDDFVWAI--------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 72 ~~~l~~~~~~~~~~-~-~~----~~~~~~~~~~~~~~wg~--------------~~~~~~~l~ve~~v 119 (328)
+|+|+||.|.+... . .. ..|++.-. ..+.+||+ +|+.||+++|+|+|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~-~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V 146 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVS-DMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVV 146 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCccc-CCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEE
Confidence 99999998754311 1 11 11222111 12334663 37889999999987
No 24
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.48 E-value=4.1e-13 Score=120.55 Aligned_cols=218 Identities=26% Similarity=0.243 Sum_probs=162.1
Q ss_pred EEEccCC-CCceeecCCceecCeeEEEEEEeCCceEEEEeecccccCCCCCcEEEEEEEEEecCCCCc-cccCccccccc
Q 020253 17 WRIDNLA-SCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRK-ALSHPEITDRQ 94 (328)
Q Consensus 17 w~I~~~~-~g~~~~S~~F~vgg~~W~l~~yp~g~~~vsL~~~~~~~~~~w~v~a~f~~~l~~~~~~~~-~~~~~~~~~~~ 94 (328)
|.|+++. .+..++|..|.+||-.|++.+||.|. +.++++...... +|.+.+.+++.+.|+..... .... .....+
T Consensus 8 ~~~~~~~~~~l~~ys~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~v~n~~~~~~~~~~~-~~~~~~ 84 (297)
T KOG1987|consen 8 WVISNFSSVGLVIYSNGFVKGGCKWRLSAYPKGN-YLSLTLSVSDSP-GWERYAKLRLTVVNQKSEKYLSTVE-EGFSWF 84 (297)
T ss_pred eeeccCcchhhhccccceeecCceEEEEEecCCC-EEEEEEEeccCC-CcceeEEEEEEEccCCCcceeeeee-eeEEec
Confidence 9999875 46778899999999999999999998 566666654433 89999999999999877542 1110 011111
Q ss_pred cccCCceeeeeeceeccceeeeeeeeeeeeecCCCCCccccccccccccCChhHHHHHHHHHhcCCCcccEEEEeCCeEE
Q 020253 95 LKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGST 174 (328)
Q Consensus 95 ~~~~~~~~wg~~~~~~~~l~ve~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~l~v~~~~f 174 (328)
+...-...||+..+.+... +... .++.+
T Consensus 85 ~~~~~~~~~g~~~~~~~~~------------------------------------------~~~~----------~~g~~ 112 (297)
T KOG1987|consen 85 RFNKVLKEWGFGKMLPLTL------------------------------------------LIDC----------SNGFL 112 (297)
T ss_pred cccccccccCcccccChHH------------------------------------------hhcc----------cCcEE
Confidence 1111111233211111111 0000 14569
Q ss_pred ehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCccccccHHHH---HHHHHhccccChHhHHH
Q 020253 175 GAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHR---LALLRAADKYDICDLKE 251 (328)
Q Consensus 175 ~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~---~~ll~~A~~~~~~~l~~ 251 (328)
.+|+.+++++|++|+.|+.....+..+..+.+.+.++..++.+..|.|........ +.. ..++..|++|+.+.++.
T Consensus 113 ~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~ 191 (297)
T KOG1987|consen 113 VAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKL 191 (297)
T ss_pred EcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccccHHHHH
Confidence 99999999999999999988777777777788999999999999999986444432 333 37888999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 020253 252 ACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV 290 (328)
Q Consensus 252 ~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~ 290 (328)
.|...+...+...++...++.|..+.+..+...|..++.
T Consensus 192 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (297)
T KOG1987|consen 192 ACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIA 230 (297)
T ss_pred HHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHh
Confidence 999999999888888899999999999999999998887
No 25
>smart00061 MATH meprin and TRAF homology.
Probab=99.37 E-value=2.6e-12 Score=94.79 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=54.6
Q ss_pred EEEEEccCC---CCceeecCCceecCeeEEEEEEeCCceEEEEeeccccc---CCCCCcEEEEEEEEEecCCCCc
Q 020253 15 AQWRIDNLA---SCSYRKSDPFKIGKWNWHLSLEKNRMLFVKLYPEVSNL---TRDNPPIASFIIRVVSSVGDRK 83 (328)
Q Consensus 15 ~~w~I~~~~---~g~~~~S~~F~vgg~~W~l~~yp~g~~~vsL~~~~~~~---~~~w~v~a~f~~~l~~~~~~~~ 83 (328)
+.|+|+|++ .|+.+.|++|.+||++|+|.+||++ .++++||..... +.+|++.|+|+++|++++|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~-~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN-GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC-CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999987 4788999999999999999999984 455555544332 2269999999999999998654
No 26
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.31 E-value=6.2e-12 Score=96.88 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred EccCCC----CceeecCCceecCeeEEEEEEeCCc-e--EEEEeecccccC--CCCCcEEEEEEEEEecCCCCccccCcc
Q 020253 19 IDNLAS----CSYRKSDPFKIGKWNWHLSLEKNRM-L--FVKLYPEVSNLT--RDNPPIASFIIRVVSSVGDRKALSHPE 89 (328)
Q Consensus 19 I~~~~~----g~~~~S~~F~vgg~~W~l~~yp~g~-~--~vsL~~~~~~~~--~~w~v~a~f~~~l~~~~~~~~~~~~~~ 89 (328)
|.||+. +.+..|+.|.+||++|+|.+||++. . .++|.|...... ..|++.|+++++++++.|+.......
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~- 79 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGNGKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISKRIK- 79 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTESTTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEEEEE-
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCCcCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcceeeee-
Confidence 566764 2345568999999999999999986 3 366666554333 48999999999999999876322111
Q ss_pred ccccccccCCceeee-e--------e-ceeccceeeeeeee
Q 020253 90 ITDRQLKNNDDFVWA-I--------E-VPLTGKFIIDVEFL 120 (328)
Q Consensus 90 ~~~~~~~~~~~~~wg-~--------~-~~~~~~l~ve~~v~ 120 (328)
.+.|....++||+ + . |+.||+++|+|+|.
T Consensus 80 --~~~F~~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~ 118 (119)
T PF00917_consen 80 --SHSFNNPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVK 118 (119)
T ss_dssp --CEEECTTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEE
T ss_pred --eeEEeeecccchhheeEHHHhCccCCeECCEEEEEEEEE
Confidence 2345545666676 1 1 68999999999993
No 27
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.26 E-value=4.1e-11 Score=96.02 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred eccceeEEEEEccCCC-------Cc--eeecCCceec--CeeEEEEEEeCCc-----eEEEEeeccccc----CCCCCcE
Q 020253 9 DTTSRLAQWRIDNLAS-------CS--YRKSDPFKIG--KWNWHLSLEKNRM-----LFVKLYPEVSNL----TRDNPPI 68 (328)
Q Consensus 9 ~~~~~~~~w~I~~~~~-------g~--~~~S~~F~vg--g~~W~l~~yp~g~-----~~vsL~~~~~~~----~~~w~v~ 68 (328)
..-.|.+.|+|+||+. |. .+.||+|..+ |++|+|++||+|. .++|||+.+... --.|+..
T Consensus 15 ~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred cccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCcee
Confidence 3457999999999962 33 6899999664 8999999999993 368888766332 2579999
Q ss_pred EEEEEEEEecCCCCccccCc------cccccccccCCceeeee-------------eceeccceeeeeee
Q 020253 69 ASFIIRVVSSVGDRKALSHP------EITDRQLKNNDDFVWAI-------------EVPLTGKFIIDVEF 119 (328)
Q Consensus 69 a~f~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~wg~-------------~~~~~~~l~ve~~v 119 (328)
.+++++|+||.+.++....- ..|.|... ..+.+||+ .|+.||++.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~-~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVN-DMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCc-ccccCcCcceEEEhhHccccCCcccCCeEEEEEEE
Confidence 99999999997533211110 01333211 22334553 28899999999877
No 28
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.73 E-value=1.3e-08 Score=97.66 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHhcCC----CcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCc------------ceEEcC
Q 020253 144 RSNATALASLGRMLTEG----IHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKEL------------STIDIP 207 (328)
Q Consensus 144 ~~~~~~~~~~~~~~~~~----~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~------------~~v~l~ 207 (328)
.+.+.+...|..|+... .+.||+|.||++.|++||.||++||++|+.+|...-+.+.. ..+.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 44556777788887653 46799999999999999999999999999998654332222 235577
Q ss_pred CCCHHHHHHHhhhhcCC
Q 020253 208 DMSIDACQAFLSYIYGN 224 (328)
Q Consensus 208 ~~~~~~f~~ll~~iY~~ 224 (328)
++.|..|+.+|+||||+
T Consensus 616 ~i~p~mfe~lL~~iYtd 632 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTD 632 (1267)
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 99999999999999987
No 29
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.2e-08 Score=91.58 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=75.4
Q ss_pred eeEEEEEccCCCCc-eeecCCceecCeeEEEEEEeCCce--EEEEeeccccc------CCCCCcEEEEEEEEEecCCCCc
Q 020253 13 RLAQWRIDNLASCS-YRKSDPFKIGKWNWHLSLEKNRML--FVKLYPEVSNL------TRDNPPIASFIIRVVSSVGDRK 83 (328)
Q Consensus 13 ~~~~w~I~~~~~g~-~~~S~~F~vgg~~W~l~~yp~g~~--~vsL~~~~~~~------~~~w~v~a~f~~~l~~~~~~~~ 83 (328)
-++.|+|.+++.+. ...||+|.|||+.|+|.++|.|.. .+++||+.-.. .+.|.|.|+|.|.+.+...+..
T Consensus 39 ~sftW~vk~wsel~~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~p~~pti 118 (1089)
T COG5077 39 MSFTWKVKRWSELAKKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAFDISNPKYPTI 118 (1089)
T ss_pred cccceecCChhhhhhhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheeeecCCCCCCch
Confidence 46899999998864 488999999999999999999932 26777765321 2459999999999988766432
Q ss_pred cccCccccccccccCCceeeee-----------------eceeccceeeeeeeeee
Q 020253 84 ALSHPEITDRQLKNNDDFVWAI-----------------EVPLTGKFIIDVEFLDL 122 (328)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~wg~-----------------~~~~~~~l~ve~~v~~~ 122 (328)
..... .+.+|.. ....||| .++.+|++.|.+.|.++
T Consensus 119 ~~iN~-sHhrFs~--~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvl 171 (1089)
T COG5077 119 EYINK-SHHRFSM--ESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVL 171 (1089)
T ss_pred hhhhc-ccccccc--cccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEE
Confidence 22111 1333322 3345774 16778889999888444
No 30
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.30 E-value=3e-06 Score=71.51 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=77.4
Q ss_pred EEEEeCCeEEehhHHHHhccCHHHHHhccCccc-ccCcceEEcCCCCHHHHHHHhhhhcCC-ccccccHHHHHHHHHhcc
Q 020253 165 IIINASNGSTGAHRAVLAARSPVFRSMFSHDLK-EKELSTIDIPDMSIDACQAFLSYIYGN-IEHEEFLTHRLALLRAAD 242 (328)
Q Consensus 165 v~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~-e~~~~~v~l~~~~~~~f~~ll~~iY~~-~~~~~~~~~~~~ll~~A~ 242 (328)
|.|-|||..|..++.-|.....+|++|+..... +.....--+-|=+|..|+.+|+||-.| .........+.+|+.-|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 568899999999999999999999999998763 222222334467999999999999954 333333488999999999
Q ss_pred ccChHhHHHHHHHHHHhc
Q 020253 243 KYDICDLKEACHDSLVED 260 (328)
Q Consensus 243 ~~~~~~l~~~c~~~l~~~ 260 (328)
.|.++.|.++|...+...
T Consensus 87 fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 87 FYLLDGLVELCQSAIARL 104 (230)
T ss_pred HhhHHHHHHHHHHHhhhc
Confidence 999999999999977664
No 31
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.25 E-value=2.4e-06 Score=72.49 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=76.0
Q ss_pred CChhHHHHHHHHHhcCCCcccEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcc--eEEcCCCCHHHHHHHhhhh
Q 020253 144 RSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELS--TIDIPDMSIDACQAFLSYI 221 (328)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~--~v~l~~~~~~~f~~ll~~i 221 (328)
.+...+++++...++-.-..|+-++.....|++||++|++|+|+|+.+........... .+...+++-++|++||+++
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 34567889999988888888999999999999999999999999999887653222222 3445588999999999999
Q ss_pred cCCccc-ccc-HHHHHHHHHhccccChH
Q 020253 222 YGNIEH-EEF-LTHRLALLRAADKYDIC 247 (328)
Q Consensus 222 Y~~~~~-~~~-~~~~~~ll~~A~~~~~~ 247 (328)
|++... .+. -+++.-|-.+..-|+.+
T Consensus 192 ~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 192 ITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 986322 211 13445555566666654
No 32
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.24 E-value=1.2e-06 Score=74.30 Aligned_cols=118 Identities=22% Similarity=0.293 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCcc-cEEEEe-CC--------------eEEehhHHHHhccCHHHHHhccCcccccC---------cc
Q 020253 148 TALASLGRMLTEGIHT-DIIINA-SN--------------GSTGAHRAVLAARSPVFRSMFSHDLKEKE---------LS 202 (328)
Q Consensus 148 ~~~~~~~~~~~~~~~~-Dv~l~v-~~--------------~~f~~hk~iLa~~S~~F~~~f~~~~~e~~---------~~ 202 (328)
.+-++++.+++..-.- |+++.+ +| ++++||++|.++||++|+.++.....|.. ..
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 4445666677665443 444433 22 37999999999999999999865443332 13
Q ss_pred eEEcC-CCCHHHHH-HHhhhhcCCcccc---------------------------ccHHHHHHHHHhccccChHhHHHHH
Q 020253 203 TIDIP-DMSIDACQ-AFLSYIYGNIEHE---------------------------EFLTHRLALLRAADKYDICDLKEAC 253 (328)
Q Consensus 203 ~v~l~-~~~~~~f~-~ll~~iY~~~~~~---------------------------~~~~~~~~ll~~A~~~~~~~l~~~c 253 (328)
.|.+. -+-|.+|. .+|+++||+...- .-...+++|+.+|-.|+++.|.+.|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 34666666 6789999973111 1123456677777777777777777
Q ss_pred HHHHHhcCChhh
Q 020253 254 HDSLVEDIDTKN 265 (328)
Q Consensus 254 ~~~l~~~l~~~~ 265 (328)
+..+......++
T Consensus 381 e~Vir~acaadl 392 (401)
T KOG2838|consen 381 EDVIRKACAADL 392 (401)
T ss_pred HHHHHhhhhhhc
Confidence 777766554443
No 33
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=98.24 E-value=1e-05 Score=64.90 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=52.7
Q ss_pred eEEEEEccCCC-------CceeecCCceec-CeeEEEEEEeCCc------eEEEEeeccccc----CCCCCc-EEEEEEE
Q 020253 14 LAQWRIDNLAS-------CSYRKSDPFKIG-KWNWHLSLEKNRM------LFVKLYPEVSNL----TRDNPP-IASFIIR 74 (328)
Q Consensus 14 ~~~w~I~~~~~-------g~~~~S~~F~vg-g~~W~l~~yp~g~------~~vsL~~~~~~~----~~~w~v-~a~f~~~ 74 (328)
.+.|+|+||+. +..+.||.|..+ ||+-.|++|++|. .+++||.....- --.|++ .-+.++.
T Consensus 3 ~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl~ 82 (167)
T cd03783 3 NAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAIIT 82 (167)
T ss_pred ceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEEE
Confidence 47899999962 456999999875 9999999999773 268888876442 346995 4589999
Q ss_pred EEecCC
Q 020253 75 VVSSVG 80 (328)
Q Consensus 75 l~~~~~ 80 (328)
|+||+.
T Consensus 83 llDQ~~ 88 (167)
T cd03783 83 VLDQDP 88 (167)
T ss_pred EEcCCc
Confidence 999963
No 34
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.17 E-value=1e-05 Score=71.77 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=93.2
Q ss_pred eEEehhHHHHhccCHHHHHhccCcccccCc-c---eEEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHHHhccccChH
Q 020253 172 GSTGAHRAVLAARSPVFRSMFSHDLKEKEL-S---TIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDIC 247 (328)
Q Consensus 172 ~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~-~---~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~A~~~~~~ 247 (328)
.+++||+++++ |.+||+.||.|++.|+.. . ...++.....+.+..++|+|++.+.... +-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALA 378 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhh
Confidence 36999999998 889999999999999652 2 2446677888999999999987554442 6677888888888665
Q ss_pred --h-HHHHHHHHHHhc---CChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhc
Q 020253 248 --D-LKEACHDSLVED---IDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFD 297 (328)
Q Consensus 248 --~-l~~~c~~~l~~~---l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~ 297 (328)
+ |+..+..-+++. ++.-++..++..+.......|...+..++. +...+..
T Consensus 379 ~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~ 435 (516)
T KOG0511|consen 379 DDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLP 435 (516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcC
Confidence 2 455555555553 234468888999999999999999988888 6555443
No 35
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.87 E-value=1e-05 Score=59.46 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=65.3
Q ss_pred EEEEeCCeEEehhHHHHh-ccCHHHHHhccCc---ccccCcceEEcCCCCHHHHHHHhhhhcC-CccccccHHHHHHHHH
Q 020253 165 IIINASNGSTGAHRAVLA-ARSPVFRSMFSHD---LKEKELSTIDIPDMSIDACQAFLSYIYG-NIEHEEFLTHRLALLR 239 (328)
Q Consensus 165 v~l~v~~~~f~~hk~iLa-~~S~~F~~~f~~~---~~e~~~~~v~l~~~~~~~f~~ll~~iY~-~~~~~~~~~~~~~ll~ 239 (328)
|.|.|||+.|.+-+..|. ....+|..|+.+. .....+.++-| |-+|..|+.+|+|+.+ +..+.........++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 678999999999999998 5667999999864 33445566655 6799999999999987 5333322356788999
Q ss_pred hccccChHhH-HHHH
Q 020253 240 AADKYDICDL-KEAC 253 (328)
Q Consensus 240 ~A~~~~~~~l-~~~c 253 (328)
-|+.|+++.+ .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999988 6655
No 36
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=97.54 E-value=0.00033 Score=56.01 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=53.7
Q ss_pred eEEEEEccCCC-------CceeecCCcee-cCeeEEEEEEeCCc----eEEEEeeccccc----CCCCCcE-EEEEEEEE
Q 020253 14 LAQWRIDNLAS-------CSYRKSDPFKI-GKWNWHLSLEKNRM----LFVKLYPEVSNL----TRDNPPI-ASFIIRVV 76 (328)
Q Consensus 14 ~~~w~I~~~~~-------g~~~~S~~F~v-gg~~W~l~~yp~g~----~~vsL~~~~~~~----~~~w~v~-a~f~~~l~ 76 (328)
.+.|+|.||+. +..+.||+|.. .||+-++++|++|. .+++||..+..- --.|+.. -++++.|+
T Consensus 3 ~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~Ll 82 (167)
T cd03782 3 EHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQATMMLL 82 (167)
T ss_pred cEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCeEEEEEE
Confidence 57899999962 45699999955 59999999999993 368888876442 3469999 89999999
Q ss_pred ecCC
Q 020253 77 SSVG 80 (328)
Q Consensus 77 ~~~~ 80 (328)
||+.
T Consensus 83 DQ~~ 86 (167)
T cd03782 83 DQHP 86 (167)
T ss_pred cCCC
Confidence 9964
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.12 E-value=0.0019 Score=46.14 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=60.3
Q ss_pred EEEEeC-CeEEehhHHHHhccCHHHHHhccCc--ccccCcceEEcCCCCHHHHHHHhhhh-c----CCc-----cccccH
Q 020253 165 IIINAS-NGSTGAHRAVLAARSPVFRSMFSHD--LKEKELSTIDIPDMSIDACQAFLSYI-Y----GNI-----EHEEFL 231 (328)
Q Consensus 165 v~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~--~~e~~~~~v~l~~~~~~~f~~ll~~i-Y----~~~-----~~~~~~ 231 (328)
|.|+.+ |..|-+.|. +|.-|+-.++||.|+ +.++..++|.+.++....++.+.+|+ | ++. ..+...
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 556554 456766665 466899999999976 56677889999999999999999998 3 221 111223
Q ss_pred HHHHHHHHhccccCh
Q 020253 232 THRLALLRAADKYDI 246 (328)
Q Consensus 232 ~~~~~ll~~A~~~~~ 246 (328)
+.+++||.+|+.+++
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 889999999998753
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.06 E-value=0.0014 Score=57.98 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=85.3
Q ss_pred eEEehhHHHHhccCHHHHHhccCcccc-cCcceEEcC-CCCHHHHHHHhhhhcCCccccccHHHHHHHHHhccccChHhH
Q 020253 172 GSTGAHRAVLAARSPVFRSMFSHDLKE-KELSTIDIP-DMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDL 249 (328)
Q Consensus 172 ~~f~~hk~iLa~~S~~F~~~f~~~~~e-~~~~~v~l~-~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~A~~~~~~~l 249 (328)
+.|.|.+.+|-..=.||+..+....++ ....+|+|. .-|-..|+-+++|+.+.... .+..++..+|.-|+.++|+.|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~L 92 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMESL 92 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHHH
Confidence 389999999999999999999653222 223456665 55789999999999985222 223889999999999999999
Q ss_pred HHHHHHHHHhcCC----------hhhHHHHHHHHHhcCChHHHHHHHH
Q 020253 250 KEACHDSLVEDID----------TKNVLERLQNAYLYQLPKLKSSCMR 287 (328)
Q Consensus 250 ~~~c~~~l~~~l~----------~~~~~~~l~~A~~~~~~~L~~~~~~ 287 (328)
.+.|-.|+.++++ --|--.+.++|..+...+|..+-++
T Consensus 93 ve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~t~~el~~~~l~ 140 (317)
T PF11822_consen 93 VEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMFTHEELEAAFLR 140 (317)
T ss_pred HHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhcCcccHhHhhhh
Confidence 9999999877632 1123346677777777777665444
No 39
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.99 E-value=0.0013 Score=48.70 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHHHhhCcHHHHHHHHHHHh
Q 020253 266 VLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELIAEVFHEVL 322 (328)
Q Consensus 266 ~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~~l 322 (328)
|+.++.+|..|++..|.+.|.+||. ||.++.+ .++|.+++...+..-|-+..+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~----~~~f~~L~~~~l~~iL~~~~l 54 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSK----SDEFLELPFDQLIEILSSDDL 54 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTT----SHHHHCS-HHHHHHHHHTSS-
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHcc----chhhhcCCHHHHHHHHhcccc
Confidence 6789999999999999999999999 9999988 778998876665554333333
No 40
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.85 E-value=0.0049 Score=41.25 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=43.4
Q ss_pred EEEEe-CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhc
Q 020253 165 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIY 222 (328)
Q Consensus 165 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY 222 (328)
++|+. +|+.|.+.+.++. .|+.++.|+.+...+.. .|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 45555 6779999998766 99999999976433333 79999999999999999985
No 41
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.73 E-value=0.0063 Score=45.43 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=45.5
Q ss_pred EEEEe-CCeEEehhHHHHhccCHHHHHhccCccccc-CcceEEcCCCCHHHHHHHhhhhcC
Q 020253 165 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEK-ELSTIDIPDMSIDACQAFLSYIYG 223 (328)
Q Consensus 165 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~~v~l~~~~~~~f~~ll~~iY~ 223 (328)
++|+. +|..|.+.+.+. .+|+.++.|+.+...+. ....|.+++++...++.+++|++.
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 55655 567999999876 59999999997543222 225899999999999999999973
No 42
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.034 Score=44.76 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCC--c----cc-----cc---------
Q 020253 170 SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGN--I----EH-----EE--------- 229 (328)
Q Consensus 170 ~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~--~----~~-----~~--------- 229 (328)
+|+.|.+...++ .+|..+.+++...--......|+|++++...|..+++|++.- . .+ ..
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 677888887654 488888888753211111157999999999999999999841 1 01 00
Q ss_pred ----cHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHH
Q 020253 230 ----FLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLE 268 (328)
Q Consensus 230 ----~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~ 268 (328)
...++.+|+.+|..+++++|...|++.+...+...+.-+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeE 134 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEE 134 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHH
Confidence 124688999999999999999999988777664444433
No 43
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.99 E-value=0.013 Score=48.75 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=71.0
Q ss_pred cEEEEeCCeEEehhHHHHhccCH--HHHHhccCcc---cccCcceEEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHH
Q 020253 164 DIIINASNGSTGAHRAVLAARSP--VFRSMFSHDL---KEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALL 238 (328)
Q Consensus 164 Dv~l~v~~~~f~~hk~iLa~~S~--~F~~~f~~~~---~e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll 238 (328)
=|.+-++|++|.-.+..|..+-| ...+||.+.- ++..+. -.+.|-+|.-|+-+|+|+..+..+..+.-++.++|
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kG-a~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvL 88 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKG-AVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVL 88 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCc-eEEEccCchhhHHHHHHHhcCceeecCCccHHHHH
Confidence 36788899988877777765544 7888987643 222223 44557899999999999998866666567899999
Q ss_pred HhccccChHhHHHHHHH
Q 020253 239 RAADKYDICDLKEACHD 255 (328)
Q Consensus 239 ~~A~~~~~~~l~~~c~~ 255 (328)
+.|+.|++-.|++..++
T Consensus 89 eeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 89 EEARFFQILSLKDHLED 105 (302)
T ss_pred HHhhHHhhHhHHhHHhh
Confidence 99999999999998887
No 44
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.77 E-value=0.013 Score=42.98 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHHHhhCcHHHHH
Q 020253 266 VLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELIA 315 (328)
Q Consensus 266 ~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~~~~~~~~l~~ 315 (328)
|+.++.+|+.|++..|.+.|.+|+. ||..+.+ .++|.+++...+..
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~----~~~f~~L~~~~l~~ 47 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQ----SEEFLELSLEQLLS 47 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhc----CcHHhcCCHHHHHH
Confidence 3567888999999999999999999 9988876 57788777444443
No 45
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.43 E-value=0.048 Score=49.94 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=67.5
Q ss_pred cEEEEeCCeEEehhHHHHhccC--HHHHHhccCcccccCcce-EEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHHHh
Q 020253 164 DIIINASNGSTGAHRAVLAARS--PVFRSMFSHDLKEKELST-IDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRA 240 (328)
Q Consensus 164 Dv~l~v~~~~f~~hk~iLa~~S--~~F~~~f~~~~~e~~~~~-v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~ 240 (328)
-|.|-|||+.|.-.+..|+... .+|.+++.+.+.-.+... ..+-|=+|+.|..+|+|+.|+..+..-..-...++.-
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 3779999999999999997654 799999987765444322 3445779999999999999874333211223445559
Q ss_pred ccccChHhHHH---HHHHHH
Q 020253 241 ADKYDICDLKE---ACHDSL 257 (328)
Q Consensus 241 A~~~~~~~l~~---~c~~~l 257 (328)
|..|++..|.+ +|+.-+
T Consensus 92 A~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 92 AMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhcCcHHHHHHhhcCcccc
Confidence 99999998766 455543
No 46
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.37 E-value=0.0098 Score=53.18 Aligned_cols=134 Identities=22% Similarity=0.320 Sum_probs=107.1
Q ss_pred cEEEEeCCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHHHhccc
Q 020253 164 DIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADK 243 (328)
Q Consensus 164 Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~A~~ 243 (328)
|.++......+.+|+.+|+..|+.|..+....-..+....+.+..+....+..+.+++|.+............++.+...
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~~ek~e~~~~~ihll~~~~~ 107 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSSLEKHEMVFFDIHLLALSHV 107 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccchhhhHHHHHHHHHHhhhhh
Confidence 33444455689999999999999999887655333344556777888899999999999885555555677889999999
Q ss_pred cChHhHHHHHHHHHHh-cCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhc
Q 020253 244 YDICDLKEACHDSLVE-DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFD 297 (328)
Q Consensus 244 ~~~~~l~~~c~~~l~~-~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~ 297 (328)
|.++..+..|..-+.. .++..++...+..+..+....|...+...+. .|....+
T Consensus 108 ~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~ 163 (319)
T KOG1778|consen 108 YVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQ 163 (319)
T ss_pred hhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhc
Confidence 9999999999887776 4578889999999999999999999999887 6666554
No 47
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.31 E-value=0.01 Score=53.19 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=64.8
Q ss_pred HHHHHhcCCC---cccEEEEeC-CeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcCCccc
Q 020253 152 SLGRMLTEGI---HTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEH 227 (328)
Q Consensus 152 ~~~~~~~~~~---~~Dv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~ 227 (328)
++..++.+.. ..|+++..+ |.-|-|||..|+++|.+|..-+..- -....+|+-..+-+.+|..||+|+|-....
T Consensus 136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~--~~~~heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMF--YVQGHEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhh--ccccCchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 4555555533 358888775 5578899999999999886543221 123456666678899999999999955111
Q ss_pred cccHHHHHHHHHhccccChHhHHH
Q 020253 228 EEFLTHRLALLRAADKYDICDLKE 251 (328)
Q Consensus 228 ~~~~~~~~~ll~~A~~~~~~~l~~ 251 (328)
.- ...-..|+.+..+|+.+.+..
T Consensus 214 ~~-~~qynallsi~~kF~~e~l~~ 236 (516)
T KOG0511|consen 214 EW-KDQYNALLSIEVKFSKEKLSL 236 (516)
T ss_pred hh-hhHHHHHHhhhhhccHHHhHH
Confidence 11 133467888888888776544
No 48
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.47 E-value=0.75 Score=36.79 Aligned_cols=97 Identities=10% Similarity=0.067 Sum_probs=69.8
Q ss_pred ccEEEEeCCeEEehhHHHHhccC-HHHHHhccCccc---ccCcceEEcCCCCHHHHHHHhhhhcCCccccccHHHHHHHH
Q 020253 163 TDIIINASNGSTGAHRAVLAARS-PVFRSMFSHDLK---EKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALL 238 (328)
Q Consensus 163 ~Dv~l~v~~~~f~~hk~iLa~~S-~~F~~~f~~~~~---e~~~~~v~l~~~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll 238 (328)
.=|.|-|||..|.--|..|..-+ .|...+....+. .....--.+-|-+|.-|..+|+|+..|....+. -.-..+|
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~eeGvL 99 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEEGVL 99 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhhccc
Confidence 34778889999999999999888 455555554321 112223456688999999999999866333321 2335799
Q ss_pred HhccccChHhHHHHHHHHHHhc
Q 020253 239 RAADKYDICDLKEACHDSLVED 260 (328)
Q Consensus 239 ~~A~~~~~~~l~~~c~~~l~~~ 260 (328)
.-|+.|.++.|.++..+.+.+.
T Consensus 100 ~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhhhccCChHHHHHHHHHHHHH
Confidence 9999999999998888877765
No 49
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=3.8 Score=31.30 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=67.3
Q ss_pred EEEEe-CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcCCCCHHHHHHHhhhhcC--C-cc------------cc
Q 020253 165 IIINA-SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYG--N-IE------------HE 228 (328)
Q Consensus 165 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~~~~~~~f~~ll~~iY~--~-~~------------~~ 228 (328)
+.++. +|+.|.+.+. .|-+|-..+.|+... . ...-.+.++++...+|+.+++|+-. + .. +.
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~-~-~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDS-T-ACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhccc-c-ccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 44444 6678888764 567888888887532 1 1122367779999999999999952 1 11 11
Q ss_pred c---------cHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhH
Q 020253 229 E---------FLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNV 266 (328)
Q Consensus 229 ~---------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~ 266 (328)
+ ..+++.++..+|++++++.|.+.|++-+...+...+.
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSp 127 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSP 127 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCH
Confidence 1 1255778888999999999999999877766544443
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=86.87 E-value=1 Score=31.49 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHHhccccChHhHHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 020253 232 THRLALLRAADKYDICDLKEACHDSLVEDID---TKNVLERLQNAY 274 (328)
Q Consensus 232 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~~~~~~l~~A~ 274 (328)
..+.+|+.+|+.++++.|...|.+.+...+. ++.+..++.+..
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 6788999999999999999999998877654 333444444443
No 51
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=85.59 E-value=1 Score=47.82 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=59.2
Q ss_pred eeecCCceecCeeEEEEEEeCCc----eEEEEeecccccCCCCCcEEEEEEEEEecCCCCccccCccccccccccCCcee
Q 020253 27 YRKSDPFKIGKWNWHLSLEKNRM----LFVKLYPEVSNLTRDNPPIASFIIRVVSSVGDRKALSHPEITDRQLKNNDDFV 102 (328)
Q Consensus 27 ~~~S~~F~vgg~~W~l~~yp~g~----~~vsL~~~~~~~~~~w~v~a~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (328)
...|+.|..|+.+|++.+.|++. ..+.+-|........|.+.+.+.++++|..+........ .. +.|. .....
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~-~~-h~~~-~~~~d 118 (1093)
T KOG1863|consen 42 RALSSNFGAGATKWKILIAPKVNSLQSTRKKLEVMPSQSLKSWSCGAQAVLRVKNTIDNLPDPEKA-IH-HVFT-ADERD 118 (1093)
T ss_pred HhcCccccccccceeeeeccccCcccceeEEeeeccCCCCcceEecchhhhccccCCCCchhhhhh-hh-hccc-ccccc
Confidence 46689999999999999999873 235555544443344999999999999933333222111 12 2222 23334
Q ss_pred eee--------------eceeccceeeeeeee
Q 020253 103 WAI--------------EVPLTGKFIIDVEFL 120 (328)
Q Consensus 103 wg~--------------~~~~~~~l~ve~~v~ 120 (328)
||+ .|+.+|++..+++|.
T Consensus 119 wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 150 (1093)
T KOG1863|consen 119 WGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVR 150 (1093)
T ss_pred hhhccchhHhhccCcccccccccceeeeeeee
Confidence 553 388889998888883
No 52
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=76.61 E-value=6.9 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=30.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhh
Q 020253 261 IDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKI 295 (328)
Q Consensus 261 l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v 295 (328)
+..+|++.++..|.+|....|.+.|++|++ +....
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~ 220 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMAD 220 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCh
Confidence 468999999999999999999999999998 54333
No 53
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=76.40 E-value=6.6 Score=28.48 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=39.1
Q ss_pred HHHHHhccccChHhHHHHHHHHHHhcC------------ChhhHHHHHHHHHh--cCChHHHHHHHHHHH-hhh
Q 020253 235 LALLRAADKYDICDLKEACHDSLVEDI------------DTKNVLERLQNAYL--YQLPKLKSSCMRYLV-KFG 293 (328)
Q Consensus 235 ~~ll~~A~~~~~~~l~~~c~~~l~~~l------------~~~~~~~~l~~A~~--~~~~~L~~~~~~~i~-~~~ 293 (328)
.+++.+|+.|+++.|...|.+|+..+. +.+....++.--+. .+-..+-+.+++|+. +..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 568999999999999999999998863 22333333332111 133568888999998 543
No 54
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.27 E-value=4.8 Score=35.57 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCcccEEEEeCCeEEehhHHHHhcc-CHHHHHhccCccc---ccCcceEEcC-CCCHHHHHHHhhhhcCCccccccHHHH
Q 020253 160 GIHTDIIINASNGSTGAHRAVLAAR-SPVFRSMFSHDLK---EKELSTIDIP-DMSIDACQAFLSYIYGNIEHEEFLTHR 234 (328)
Q Consensus 160 ~~~~Dv~l~v~~~~f~~hk~iLa~~-S~~F~~~f~~~~~---e~~~~~v~l~-~~~~~~f~~ll~~iY~~~~~~~~~~~~ 234 (328)
+...-++..+++..|-+.+.+|.+. -...-.||.+++. .+...+.++. +++..+|+++|+|.-+|+.-....-.+
T Consensus 93 g~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSv 172 (438)
T KOG3840|consen 93 GEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 172 (438)
T ss_pred CCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCch
Confidence 3444688888999999998888543 3345566666542 2233456654 789999999999988874332222456
Q ss_pred HHHHHhccccChH
Q 020253 235 LALLRAADKYDIC 247 (328)
Q Consensus 235 ~~ll~~A~~~~~~ 247 (328)
.+|-++.|++.++
T Consensus 173 pELrEACDYLlip 185 (438)
T KOG3840|consen 173 SELREACDYLLVP 185 (438)
T ss_pred HHHHhhcceEEee
Confidence 7777777776554
No 55
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=66.01 E-value=10 Score=27.77 Aligned_cols=28 Identities=39% Similarity=0.592 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 020253 263 TKNVLERLQNAYLYQLPKLKSSCMRYLV 290 (328)
Q Consensus 263 ~~~~~~~l~~A~~~~~~~L~~~~~~~i~ 290 (328)
.+++..++.+|+.++.+.|++.|.+++.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7889999999999999999999999986
No 56
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=65.95 E-value=2.7 Score=37.58 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=45.5
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHH-hhhhhhccccchHHHHhhCcHHHHHHH
Q 020253 260 DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDIRDDFSVFLQCADRELIAEV 317 (328)
Q Consensus 260 ~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~~~~~~~~~~~~~~~l~~~l 317 (328)
.+++.|++.++.-++....+.|.+.|+.|+. |..++.. .+-.+.-++.+++..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~----~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVA----SPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHc----CCCCcccCCHHHHHHH
Confidence 4689999999999999999999999999999 9999987 5666666666666654
No 57
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=62.92 E-value=11 Score=31.95 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=55.0
Q ss_pred cccEE-EEeCCeEEehhHHHH-hccCHHHHHhccCcccccC--cceEEcCCCCHHHHHHHhhhhcCC-ccccccHHHHHH
Q 020253 162 HTDII-INASNGSTGAHRAVL-AARSPVFRSMFSHDLKEKE--LSTIDIPDMSIDACQAFLSYIYGN-IEHEEFLTHRLA 236 (328)
Q Consensus 162 ~~Dv~-l~v~~~~f~~hk~iL-a~~S~~F~~~f~~~~~e~~--~~~v~l~~~~~~~f~~ll~~iY~~-~~~~~~~~~~~~ 236 (328)
+.|++ +-+||..|.....-| +-.-....+||.+...-.+ +....| |-+-..|+.+|+|+-+. ....+.-.++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 44544 555665444333323 3344456667765322111 112222 45778999999999983 222222266888
Q ss_pred HHHhccccChHhHHHHHHH
Q 020253 237 LLRAADKYDICDLKEACHD 255 (328)
Q Consensus 237 ll~~A~~~~~~~l~~~c~~ 255 (328)
|...|+.|+++.+..++.+
T Consensus 86 L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHccccHHHHHhc
Confidence 9999999999977665544
No 58
>PHA03098 kelch-like protein; Provisional
Probab=46.86 E-value=29 Score=33.73 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=28.5
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 020253 261 IDTKNVLERLQNAYLYQLPKLKSSCMRYLV 290 (328)
Q Consensus 261 l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~ 290 (328)
++.+|+.+++..|+.+..+.|++.|.+|+.
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~ 102 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYII 102 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 578899999999999999999999999998
No 59
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=43.23 E-value=18 Score=33.76 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=52.3
Q ss_pred ccceeEEEEEccCCC---------CceeecCCcee--cCeeEEEEEEeCCc-----eEEEEeecccc----cCCCCCcEE
Q 020253 10 TTSRLAQWRIDNLAS---------CSYRKSDPFKI--GKWNWHLSLEKNRM-----LFVKLYPEVSN----LTRDNPPIA 69 (328)
Q Consensus 10 ~~~~~~~w~I~~~~~---------g~~~~S~~F~v--gg~~W~l~~yp~g~-----~~vsL~~~~~~----~~~~w~v~a 69 (328)
...|+..|+|.+++. +..+.|+.|.. .||.=..++|-+|+ .++++|..... ..-.|+..-
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCC
Confidence 457999999998842 34588988865 48888888887773 35777776533 245699999
Q ss_pred EEEEEEEec
Q 020253 70 SFIIRVVSS 78 (328)
Q Consensus 70 ~f~~~l~~~ 78 (328)
+.++.++++
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 60
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=39.81 E-value=27 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHhccccChHhHHHHHHHHHHhc
Q 020253 235 LALLRAADKYDICDLKEACHDSLVED 260 (328)
Q Consensus 235 ~~ll~~A~~~~~~~l~~~c~~~l~~~ 260 (328)
.+++.+|+.|+.+.|...|.+++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998775
No 61
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=39.09 E-value=17 Score=27.57 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=36.7
Q ss_pred CCeEEehhHHHHhccCHHHHHhccCcccccCcceEEcC-CC--CHHHHHHHhhhhcCCccccc
Q 020253 170 SNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIP-DM--SIDACQAFLSYIYGNIEHEE 229 (328)
Q Consensus 170 ~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~~v~l~-~~--~~~~f~~ll~~iY~~~~~~~ 229 (328)
++..+.+|-.+++++||...+.=.. ..=+. ..+..| |. --+.....|+++|.+....+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~-IpY~~-~~ii~PFDFNglEe~I~~~l~~mY~~s~~~e 80 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFI-IPYTH-EGIIPPFDFNGLEEGIKNTLKIMYKDSKIEE 80 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEE-EeccC-CCeECCcccCcHHHHHHHHHHHHhCCCCccc
Confidence 4679999999999999988643100 00111 122222 33 45788999999998755554
No 62
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=38.95 E-value=1.9e+02 Score=22.66 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=38.7
Q ss_pred EEcCC--CCHHHHHHHhhhhcCCccccccHHHHHHHHHhccccChHhHHHHHHHHHHhcCChhhHHHHHHHHHhcCChHH
Q 020253 204 IDIPD--MSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKL 281 (328)
Q Consensus 204 v~l~~--~~~~~f~~ll~~iY~~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~A~~~~~~~L 281 (328)
+.+.+ ++|+.|..+++.+..+..-. ..+.++ ....+...-+++.++.-..++..-.-..|
T Consensus 33 ~~~~~~~i~~~~l~~li~l~~~~~Is~---~~ak~l---------------l~~~~~~~~~~~~ii~~~~l~~i~d~~el 94 (148)
T PF02637_consen 33 LDIEDSPISPEHLAELINLLEDGKISK---KSAKEL---------------LRELLENGKSPEEIIEENGLWQISDEEEL 94 (148)
T ss_dssp --TTTSSSTHHHHHHHHHHHHTTSSGH---HHHHHH---------------HHHHHHHTS-HHHHHHHTT---B--CCHH
T ss_pred CChhhcCCCHHHHHHHHHHHHcCCCCH---HHHHHH---------------HHHHHHcCCCHHHHHHHcCCCcCCCHHHH
Confidence 34444 78888888888887652111 122222 22222223344555555445444455678
Q ss_pred HHHHHHHHH-hhhhhhccc
Q 020253 282 KSSCMRYLV-KFGKIFDIR 299 (328)
Q Consensus 282 ~~~~~~~i~-~~~~v~~~~ 299 (328)
...|.+.+. +...+.+.+
T Consensus 95 ~~~v~~vi~~n~~~v~~~~ 113 (148)
T PF02637_consen 95 EALVEEVIAENPKEVEDYR 113 (148)
T ss_dssp HHHHHHHHHC-HHHHHHHC
T ss_pred HHHHHHHHHHCHHHHHHHH
Confidence 888888887 666665533
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=36.63 E-value=50 Score=31.78 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHhccccChHhHHHHHHHHHHhcC
Q 020253 232 THRLALLRAADKYDICDLKEACHDSLVEDI 261 (328)
Q Consensus 232 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 261 (328)
+|..+++.+|+.|+++.|.+.+.+|+.++.
T Consensus 123 ~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 123 EYCVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred chHHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 779999999999999999999999988873
No 64
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.51 E-value=32 Score=31.92 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=27.7
Q ss_pred HHHHHHHHhccccChHhHHHHHHHHHHhcC
Q 020253 232 THRLALLRAADKYDICDLKEACHDSLVEDI 261 (328)
Q Consensus 232 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 261 (328)
.++..-+++|.+|+++.++..|.++|..++
T Consensus 173 kta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 173 KTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred hhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 778999999999999999999999988764
No 65
>PHA02713 hypothetical protein; Provisional
Probab=27.72 E-value=1e+02 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 020253 260 DIDTKNVLERLQNAYLYQLPKLKSSCMRYLV 290 (328)
Q Consensus 260 ~l~~~~~~~~l~~A~~~~~~~L~~~~~~~i~ 290 (328)
.++.+|+..++..|+.+....|++.|.+|+.
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~ 120 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIK 120 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 3688999999999999999999999999998
No 66
>PF08922 DUF1905: Domain of unknown function (DUF1905); InterPro: IPR015018 This family consist of hypothetical bacterial proteins. ; PDB: 2D9R_A.
Probab=27.44 E-value=1.1e+02 Score=21.35 Aligned_cols=23 Identities=22% Similarity=-0.034 Sum_probs=16.8
Q ss_pred eecCeeEEEEEEeCCceEEEEee
Q 020253 34 KIGKWNWHLSLEKNRMLFVKLYP 56 (328)
Q Consensus 34 ~vgg~~W~l~~yp~g~~~vsL~~ 56 (328)
+++|++|+-.+.|.|...-.|.+
T Consensus 38 tI~g~~~~~sl~p~g~G~~~Lpv 60 (80)
T PF08922_consen 38 TIDGHPWRTSLFPMGNGGYILPV 60 (80)
T ss_dssp EETTEEEEEEEEESSTT-EEEEE
T ss_pred EECCEEEEEEEEECCCCCEEEEE
Confidence 67999999999997754444444
No 67
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=24.11 E-value=74 Score=19.69 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH--hhhhh
Q 020253 263 TKNVLERLQNAYLYQLPKLKSSCMRYLV--KFGKI 295 (328)
Q Consensus 263 ~~~~~~~l~~A~~~~~~~L~~~~~~~i~--~~~~v 295 (328)
..-+..++..|+......++..|..-|. +|.++
T Consensus 10 l~YV~nmLivA~d~~f~~v~~~C~Atii~yHf~DF 44 (48)
T PF06887_consen 10 LMYVCNMLIVAHDARFGNVQNCCIATIISYHFHDF 44 (48)
T ss_pred HHHHHhHheeeccccchHHHHHHHHHHHHHHHHHH
Confidence 4456678888888888888888888876 54443
No 68
>COG5513 Predicted secreted protein [Function unknown]
Probab=20.94 E-value=2.8e+02 Score=20.78 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=11.0
Q ss_pred eecCCceecCeeEEEEE
Q 020253 28 RKSDPFKIGKWNWHLSL 44 (328)
Q Consensus 28 ~~S~~F~vgg~~W~l~~ 44 (328)
++++.=.+-|+.|.|..
T Consensus 31 L~l~~NPtTGysWeL~~ 47 (113)
T COG5513 31 LQLPENPTTGYSWELNT 47 (113)
T ss_pred EEecCCCccceEEEEec
Confidence 55555556688888764
Done!