Query 020255
Match_columns 328
No_of_seqs 61 out of 63
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 08:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 1E-58 2.3E-63 394.3 14.1 120 92-211 6-126 (126)
2 PF10805 DUF2730: Protein of u 97.0 0.0018 3.8E-08 53.9 5.7 88 94-207 9-98 (106)
3 PRK10884 SH3 domain-containing 95.9 0.27 5.8E-06 45.7 14.0 99 104-210 66-168 (206)
4 PF04375 HemX: HemX; InterPro 95.9 0.088 1.9E-06 52.0 11.1 10 101-110 41-50 (372)
5 KOG2629 Peroxisomal membrane a 95.3 0.065 1.4E-06 52.5 7.7 71 93-164 85-165 (300)
6 PF01519 DUF16: Protein of unk 94.6 0.24 5.2E-06 42.0 8.3 82 119-209 21-102 (102)
7 PF14712 Snapin_Pallidin: Snap 93.4 1.3 2.9E-05 35.0 10.1 72 136-208 15-91 (92)
8 PF00038 Filament: Intermediat 93.4 3.1 6.7E-05 39.2 14.3 91 126-216 167-258 (312)
9 PHA02562 46 endonuclease subun 93.1 1.1 2.3E-05 45.3 11.2 86 132-217 192-277 (562)
10 PRK11637 AmiB activator; Provi 93.0 1.3 2.9E-05 44.1 11.8 80 126-205 45-127 (428)
11 PF11932 DUF3450: Protein of u 92.5 3 6.6E-05 38.8 12.7 78 135-212 24-101 (251)
12 PF04582 Reo_sigmaC: Reovirus 92.2 0.18 4E-06 50.1 4.5 87 124-210 66-155 (326)
13 PF10158 LOH1CR12: Tumour supp 91.5 4.2 9.1E-05 35.6 11.6 50 124-173 27-76 (131)
14 PRK11637 AmiB activator; Provi 91.5 1.7 3.7E-05 43.4 10.5 78 131-208 43-123 (428)
15 PF07889 DUF1664: Protein of u 91.3 3.5 7.5E-05 36.0 10.9 38 140-177 30-67 (126)
16 PRK10920 putative uroporphyrin 91.3 0.87 1.9E-05 46.1 8.2 67 90-164 35-103 (390)
17 smart00502 BBC B-Box C-termina 90.8 2.7 5.9E-05 33.3 9.1 31 212-242 85-116 (127)
18 PRK15048 methyl-accepting chem 90.7 15 0.00032 37.3 16.4 11 245-255 528-538 (553)
19 PF07798 DUF1640: Protein of u 90.6 11 0.00025 33.6 13.8 98 120-220 43-145 (177)
20 PF12718 Tropomyosin_1: Tropom 90.2 5.3 0.00012 35.0 11.1 62 150-211 77-138 (143)
21 PF00015 MCPsignal: Methyl-acc 89.6 12 0.00027 32.3 12.9 15 61-75 45-59 (213)
22 PF13747 DUF4164: Domain of un 89.6 4.4 9.4E-05 33.1 9.4 81 141-225 3-83 (89)
23 PF06419 COG6: Conserved oligo 89.5 3.1 6.6E-05 44.1 10.7 88 115-205 6-97 (618)
24 KOG0250 DNA repair protein RAD 88.7 5.7 0.00012 45.2 12.5 98 134-231 290-387 (1074)
25 PF00015 MCPsignal: Methyl-acc 88.3 16 0.00035 31.6 13.9 25 180-204 134-158 (213)
26 PF11932 DUF3450: Protein of u 88.2 8.7 0.00019 35.8 11.6 76 130-205 33-108 (251)
27 PF06103 DUF948: Bacterial pro 87.9 4.9 0.00011 31.8 8.6 21 187-207 67-87 (90)
28 PF10046 BLOC1_2: Biogenesis o 86.9 13 0.00029 30.4 10.8 68 143-210 25-95 (99)
29 PRK06975 bifunctional uroporph 86.7 4.3 9.3E-05 43.4 9.7 39 141-179 373-411 (656)
30 PF04156 IncA: IncA protein; 86.4 13 0.00029 32.7 11.3 6 220-225 176-181 (191)
31 PF01442 Apolipoprotein: Apoli 86.4 13 0.00029 31.1 10.8 19 126-144 3-21 (202)
32 PF05816 TelA: Toxic anion res 86.3 10 0.00022 37.1 11.4 99 123-221 86-202 (333)
33 PF05478 Prominin: Prominin; 85.9 7.9 0.00017 42.2 11.5 33 130-162 189-222 (806)
34 PRK04778 septation ring format 85.6 16 0.00034 38.3 13.0 121 103-223 237-411 (569)
35 COG3883 Uncharacterized protei 85.4 5.9 0.00013 38.6 9.2 67 138-204 37-103 (265)
36 PHA02562 46 endonuclease subun 85.3 14 0.00029 37.5 12.1 53 155-207 332-384 (562)
37 PF04513 Baculo_PEP_C: Baculov 85.0 16 0.00034 32.7 10.9 83 125-207 35-118 (140)
38 TIGR02132 phaR_Bmeg polyhydrox 84.7 4.2 9E-05 37.9 7.4 57 151-207 77-133 (189)
39 PF05531 NPV_P10: Nucleopolyhe 83.8 4.5 9.8E-05 32.7 6.4 53 128-181 11-63 (75)
40 PF10241 KxDL: Uncharacterized 83.4 11 0.00025 30.4 8.7 63 144-206 16-82 (88)
41 PRK10884 SH3 domain-containing 83.3 14 0.0003 34.5 10.4 70 125-194 97-166 (206)
42 TIGR00293 prefoldin, archaeal 83.3 2.7 5.9E-05 34.9 5.2 55 99-184 70-124 (126)
43 COG4942 Membrane-bound metallo 83.1 12 0.00026 38.7 10.7 82 135-221 38-119 (420)
44 PF04100 Vps53_N: Vps53-like, 82.8 5.2 0.00011 40.1 7.9 41 190-230 59-99 (383)
45 PRK15048 methyl-accepting chem 82.7 34 0.00074 34.8 13.8 60 138-197 269-328 (553)
46 PF10498 IFT57: Intra-flagella 82.3 16 0.00035 36.7 11.1 77 121-197 227-317 (359)
47 smart00283 MA Methyl-accepting 82.3 34 0.00074 30.0 13.9 51 158-208 37-87 (262)
48 PRK04778 septation ring format 82.1 25 0.00054 36.8 12.8 17 58-74 251-267 (569)
49 PF10186 Atg14: UV radiation r 82.0 26 0.00057 32.1 11.6 47 145-191 62-108 (302)
50 PF00261 Tropomyosin: Tropomyo 82.0 22 0.00047 33.1 11.2 68 152-219 91-158 (237)
51 PF10805 DUF2730: Protein of u 81.9 9.5 0.00021 31.8 7.9 65 152-223 34-100 (106)
52 PF04380 BMFP: Membrane fusoge 81.8 9.6 0.00021 30.4 7.6 78 119-209 1-78 (79)
53 PRK09039 hypothetical protein; 81.2 20 0.00044 35.5 11.2 87 137-223 100-194 (343)
54 PRK13182 racA polar chromosome 81.1 7.4 0.00016 35.5 7.5 63 145-209 84-146 (175)
55 smart00806 AIP3 Actin interact 81.0 27 0.00058 36.3 12.3 96 124-219 176-303 (426)
56 PF09177 Syntaxin-6_N: Syntaxi 79.9 7.9 0.00017 31.3 6.7 23 146-168 39-61 (97)
57 PF08614 ATG16: Autophagy prot 79.8 7.7 0.00017 35.0 7.2 96 114-209 71-172 (194)
58 PF05739 SNARE: SNARE domain; 79.8 15 0.00032 26.7 7.5 51 154-204 5-55 (63)
59 PRK04406 hypothetical protein; 79.7 8.8 0.00019 30.6 6.7 46 146-191 4-49 (75)
60 PF06103 DUF948: Bacterial pro 79.6 21 0.00044 28.2 8.8 29 119-147 17-45 (90)
61 PF04102 SlyX: SlyX; InterPro 79.2 8.2 0.00018 29.9 6.3 52 151-209 2-53 (69)
62 PF05791 Bacillus_HBL: Bacillu 78.2 26 0.00057 31.6 10.1 88 122-209 78-170 (184)
63 PRK11166 chemotaxis regulator 78.2 32 0.0007 32.6 11.0 114 124-237 26-168 (214)
64 smart00283 MA Methyl-accepting 77.9 48 0.001 29.1 14.0 73 125-197 137-209 (262)
65 PF12718 Tropomyosin_1: Tropom 77.9 48 0.001 29.1 12.6 90 128-221 17-106 (143)
66 cd00890 Prefoldin Prefoldin is 77.7 5.8 0.00012 32.4 5.3 38 148-185 89-126 (129)
67 PF08317 Spc7: Spc7 kinetochor 77.5 37 0.0008 33.1 11.6 47 117-163 152-201 (325)
68 KOG1161 Protein involved in va 77.5 6.5 0.00014 39.2 6.5 71 125-196 45-115 (310)
69 TIGR01837 PHA_granule_1 poly(h 77.4 22 0.00047 30.3 8.8 63 147-209 53-117 (118)
70 cd00584 Prefoldin_alpha Prefol 77.2 6.1 0.00013 33.0 5.4 42 144-185 85-126 (129)
71 COG1579 Zn-ribbon protein, pos 77.2 6.8 0.00015 37.6 6.3 55 154-208 11-65 (239)
72 PF09602 PhaP_Bmeg: Polyhydrox 77.1 31 0.00068 31.7 10.2 88 110-207 14-104 (165)
73 PF04582 Reo_sigmaC: Reovirus 76.9 1.4 3E-05 44.0 1.7 63 126-192 40-102 (326)
74 PRK14011 prefoldin subunit alp 76.8 5.6 0.00012 35.2 5.3 40 143-182 85-124 (144)
75 PF12325 TMF_TATA_bd: TATA ele 76.7 24 0.00053 30.5 9.0 64 121-185 44-107 (120)
76 PF07888 CALCOCO1: Calcium bin 76.6 29 0.00062 37.2 11.2 78 115-192 128-210 (546)
77 PF06008 Laminin_I: Laminin Do 76.4 34 0.00074 32.1 10.7 81 126-210 22-102 (264)
78 PRK13729 conjugal transfer pil 76.4 35 0.00075 36.0 11.6 51 161-211 70-120 (475)
79 COG4942 Membrane-bound metallo 76.4 37 0.0008 35.3 11.6 91 122-212 158-255 (420)
80 PF05597 Phasin: Poly(hydroxya 76.4 21 0.00046 31.3 8.7 25 187-211 108-132 (132)
81 PF05531 NPV_P10: Nucleopolyhe 76.2 13 0.00028 30.1 6.7 22 186-207 40-61 (75)
82 PRK04863 mukB cell division pr 75.8 48 0.001 39.3 13.7 81 128-208 314-403 (1486)
83 COG1196 Smc Chromosome segrega 75.5 60 0.0013 37.0 14.1 28 183-210 872-899 (1163)
84 PF02996 Prefoldin: Prefoldin 75.4 7.3 0.00016 31.7 5.3 41 144-184 75-115 (120)
85 COG1196 Smc Chromosome segrega 75.2 59 0.0013 37.0 13.9 44 171-214 867-910 (1163)
86 PRK00846 hypothetical protein; 75.0 20 0.00044 29.0 7.6 55 148-209 8-62 (77)
87 PF08317 Spc7: Spc7 kinetochor 74.9 74 0.0016 31.1 12.9 17 214-230 274-290 (325)
88 PF10498 IFT57: Intra-flagella 74.8 18 0.00039 36.4 8.8 27 115-141 232-258 (359)
89 PRK09793 methyl-accepting prot 74.8 83 0.0018 32.2 13.8 34 150-183 279-312 (533)
90 PF09730 BicD: Microtubule-ass 74.6 1.5E+02 0.0032 33.0 16.4 102 127-236 372-473 (717)
91 PF10168 Nup88: Nuclear pore c 74.4 31 0.00066 37.8 11.1 32 148-179 588-619 (717)
92 KOG0972 Huntingtin interacting 74.3 32 0.00069 34.8 10.2 100 111-210 223-327 (384)
93 PF12732 YtxH: YtxH-like prote 73.6 14 0.0003 28.5 6.2 39 101-146 13-51 (74)
94 PF07295 DUF1451: Protein of u 73.4 14 0.00031 32.8 7.0 55 138-192 3-58 (146)
95 PF14197 Cep57_CLD_2: Centroso 73.0 36 0.00079 26.8 8.4 66 143-208 2-67 (69)
96 PF10073 DUF2312: Uncharacteri 72.5 14 0.0003 30.0 6.0 44 149-199 7-50 (74)
97 PF06120 Phage_HK97_TLTM: Tail 72.4 56 0.0012 32.5 11.4 59 124-182 41-103 (301)
98 PF03915 AIP3: Actin interacti 72.2 31 0.00066 35.7 9.9 86 141-226 201-306 (424)
99 COG3750 Uncharacterized protei 72.1 23 0.00049 29.4 7.2 44 149-199 17-60 (85)
100 PF02403 Seryl_tRNA_N: Seryl-t 71.7 19 0.00042 29.1 6.9 61 145-209 35-95 (108)
101 PF04740 LXG: LXG domain of WX 71.5 73 0.0016 28.2 11.8 30 183-212 140-169 (204)
102 TIGR00833 actII Transport prot 71.4 44 0.00095 37.0 11.6 49 183-231 602-650 (910)
103 PF05008 V-SNARE: Vesicle tran 71.2 26 0.00055 26.8 7.1 50 127-179 2-51 (79)
104 PRK03947 prefoldin subunit alp 71.0 10 0.00022 32.2 5.4 38 145-182 93-130 (140)
105 PF12128 DUF3584: Protein of u 70.9 50 0.0011 37.8 12.1 94 130-226 258-352 (1201)
106 PF04129 Vps52: Vps52 / Sac2 f 70.4 50 0.0011 34.3 11.1 62 152-213 13-74 (508)
107 PRK15041 methyl-accepting chem 70.2 1.1E+02 0.0024 31.5 13.6 12 126-137 252-263 (554)
108 PF04513 Baculo_PEP_C: Baculov 69.7 83 0.0018 28.2 10.9 80 126-208 18-105 (140)
109 PRK10698 phage shock protein P 69.2 48 0.001 31.0 9.8 80 130-214 97-185 (222)
110 PF10018 Med4: Vitamin-D-recep 68.9 83 0.0018 28.4 11.0 87 137-234 11-99 (188)
111 TIGR00996 Mtu_fam_mce virulenc 68.8 93 0.002 29.1 11.7 8 61-68 135-142 (291)
112 KOG0161 Myosin class II heavy 68.5 42 0.0009 40.9 11.1 81 128-208 1361-1441(1930)
113 TIGR01000 bacteriocin_acc bact 68.5 48 0.001 33.5 10.3 35 136-170 162-196 (457)
114 PF06160 EzrA: Septation ring 67.9 67 0.0014 33.8 11.5 121 103-223 233-407 (560)
115 PRK02119 hypothetical protein; 67.8 23 0.0005 28.0 6.3 51 150-207 6-56 (73)
116 PRK02224 chromosome segregatio 67.7 51 0.0011 35.6 10.9 29 136-164 163-198 (880)
117 PF06160 EzrA: Septation ring 67.7 25 0.00055 36.9 8.4 61 138-198 371-431 (560)
118 KOG4674 Uncharacterized conser 67.6 34 0.00074 41.3 10.1 23 135-157 805-827 (1822)
119 PF06295 DUF1043: Protein of u 67.3 23 0.00051 30.4 6.8 51 118-176 16-66 (128)
120 PF10168 Nup88: Nuclear pore c 66.8 74 0.0016 34.9 11.9 77 126-206 541-618 (717)
121 TIGR03495 phage_LysB phage lys 66.8 13 0.00029 32.8 5.3 15 98-112 7-21 (135)
122 PRK02793 phi X174 lysis protei 66.7 22 0.00048 28.0 6.0 52 150-208 5-56 (72)
123 TIGR03185 DNA_S_dndD DNA sulfu 66.7 84 0.0018 33.4 12.1 35 173-207 434-468 (650)
124 PRK02224 chromosome segregatio 66.5 1.4E+02 0.0031 32.3 13.9 6 8-13 25-30 (880)
125 PF15397 DUF4618: Domain of un 66.3 93 0.002 30.4 11.3 87 134-223 62-148 (258)
126 KOG0250 DNA repair protein RAD 66.0 59 0.0013 37.4 11.2 63 148-210 360-423 (1074)
127 smart00787 Spc7 Spc7 kinetocho 65.9 1.2E+02 0.0027 29.9 12.3 107 123-229 153-284 (312)
128 cd00632 Prefoldin_beta Prefold 65.6 17 0.00036 29.8 5.4 15 61-75 18-32 (105)
129 TIGR03513 GldL_gliding gliding 65.6 98 0.0021 29.3 11.0 89 117-207 103-191 (202)
130 TIGR00606 rad50 rad50. This fa 65.5 1.1E+02 0.0024 35.4 13.4 79 119-197 879-957 (1311)
131 PF15358 TSKS: Testis-specific 65.5 60 0.0013 34.2 10.3 122 150-274 136-261 (558)
132 TIGR01843 type_I_hlyD type I s 65.3 1.3E+02 0.0029 28.8 13.0 15 61-75 86-100 (423)
133 PF15188 CCDC-167: Coiled-coil 65.1 20 0.00043 29.6 5.7 59 132-194 2-63 (85)
134 PF03908 Sec20: Sec20; InterP 65.1 70 0.0015 25.6 8.8 60 138-201 4-63 (92)
135 PRK00295 hypothetical protein; 65.1 29 0.00064 27.0 6.4 50 151-207 3-52 (68)
136 PF10828 DUF2570: Protein of u 64.9 22 0.00049 29.6 6.1 20 97-116 9-28 (110)
137 COG3074 Uncharacterized protei 64.5 74 0.0016 26.0 8.6 67 155-221 6-72 (79)
138 PRK13694 hypothetical protein; 64.4 35 0.00076 28.3 6.9 44 149-199 15-58 (83)
139 PRK10803 tol-pal system protei 64.3 27 0.00059 33.2 7.3 38 169-206 63-100 (263)
140 KOG4117 Heat shock factor bind 64.3 45 0.00097 26.9 7.2 46 122-167 10-55 (73)
141 PF10146 zf-C4H2: Zinc finger- 64.3 1.4E+02 0.0029 28.6 15.9 67 160-226 32-98 (230)
142 PF05701 WEMBL: Weak chloropla 64.2 1.3E+02 0.0027 31.6 12.6 43 168-210 282-324 (522)
143 PF06148 COG2: COG (conserved 63.9 8.6 0.00019 32.5 3.5 48 125-172 66-113 (133)
144 PRK03918 chromosome segregatio 63.8 52 0.0011 35.4 10.0 62 136-197 159-223 (880)
145 PF01442 Apolipoprotein: Apoli 63.8 87 0.0019 26.2 11.3 40 150-189 86-126 (202)
146 PRK09110 flagellar motor prote 63.6 52 0.0011 32.1 9.2 93 94-188 5-106 (283)
147 PF04912 Dynamitin: Dynamitin 63.3 39 0.00085 33.6 8.5 55 150-207 333-387 (388)
148 COG3883 Uncharacterized protei 63.3 40 0.00087 33.0 8.3 54 155-208 33-86 (265)
149 PRK04325 hypothetical protein; 63.1 32 0.00069 27.2 6.3 52 150-208 6-57 (74)
150 PRK00736 hypothetical protein; 62.4 32 0.00068 26.8 6.1 50 151-207 3-52 (68)
151 PF04111 APG6: Autophagy prote 62.0 68 0.0015 31.5 9.7 70 139-208 64-133 (314)
152 PRK03918 chromosome segregatio 62.0 1E+02 0.0022 33.2 11.8 11 153-163 640-650 (880)
153 PLN03094 Substrate binding sub 61.7 35 0.00077 34.6 7.9 15 60-74 231-245 (370)
154 PF03670 UPF0184: Uncharacteri 61.6 36 0.00079 28.1 6.5 48 130-181 28-75 (83)
155 cd07596 BAR_SNX The Bin/Amphip 61.4 1.1E+02 0.0024 26.5 13.5 97 124-223 60-173 (218)
156 TIGR03185 DNA_S_dndD DNA sulfu 60.9 85 0.0018 33.3 10.8 43 151-193 426-468 (650)
157 cd07912 Tweety_N N-terminal do 60.8 44 0.00095 34.5 8.5 83 99-186 93-184 (418)
158 PF04799 Fzo_mitofusin: fzo-li 60.7 50 0.0011 30.5 8.0 64 139-209 102-165 (171)
159 COG2900 SlyX Uncharacterized p 60.4 36 0.00079 27.5 6.2 38 148-185 3-40 (72)
160 TIGR01916 F420_cofE F420-0:gam 60.4 5.7 0.00012 38.2 2.0 72 63-135 126-202 (243)
161 cd00193 t_SNARE Soluble NSF (N 60.2 52 0.0011 22.9 6.5 42 153-194 6-47 (60)
162 COG5283 Phage-related tail pro 60.1 90 0.002 36.5 11.4 91 126-216 27-120 (1213)
163 PF03148 Tektin: Tektin family 60.0 1.5E+02 0.0033 29.8 11.9 20 189-208 325-344 (384)
164 PF10779 XhlA: Haemolysin XhlA 59.5 32 0.0007 26.6 5.7 15 150-164 3-17 (71)
165 PLN03184 chloroplast Hsp70; Pr 59.4 99 0.0022 33.3 11.2 67 141-209 561-632 (673)
166 PRK10698 phage shock protein P 59.3 1.6E+02 0.0034 27.6 11.3 42 172-213 97-138 (222)
167 KOG2180 Late Golgi protein sor 59.1 45 0.00097 37.0 8.5 26 146-171 40-65 (793)
168 PRK04098 sec-independent trans 58.9 32 0.00069 31.4 6.3 57 124-181 23-79 (158)
169 KOG0240 Kinesin (SMY1 subfamil 58.4 1.1E+02 0.0024 33.2 11.1 151 107-259 372-532 (607)
170 PF15450 DUF4631: Domain of un 58.3 80 0.0017 33.8 10.0 93 114-206 333-448 (531)
171 PF07851 TMPIT: TMPIT-like pro 58.0 87 0.0019 31.6 9.8 22 297-318 239-260 (330)
172 cd00179 SynN Syntaxin N-termin 57.9 97 0.0021 25.9 8.8 19 128-146 6-24 (151)
173 PF08700 Vps51: Vps51/Vps67; 57.9 84 0.0018 24.1 8.0 60 146-208 26-85 (87)
174 PF04375 HemX: HemX; InterPro 57.8 93 0.002 31.0 10.0 17 97-113 40-56 (372)
175 PF03114 BAR: BAR domain; Int 57.7 62 0.0013 27.8 7.8 15 61-75 31-45 (229)
176 PF00804 Syntaxin: Syntaxin; 57.2 85 0.0019 24.0 10.6 62 126-187 5-69 (103)
177 COG1256 FlgK Flagellar hook-as 57.2 82 0.0018 33.6 10.0 84 121-208 131-214 (552)
178 PF08702 Fib_alpha: Fibrinogen 57.2 1.4E+02 0.003 26.4 11.7 96 115-210 23-126 (146)
179 COG1842 PspA Phage shock prote 57.0 1.5E+02 0.0032 28.2 10.7 83 123-210 94-181 (225)
180 smart00787 Spc7 Spc7 kinetocho 56.7 2.1E+02 0.0046 28.3 12.7 76 137-212 163-242 (312)
181 TIGR00996 Mtu_fam_mce virulenc 56.5 1.7E+02 0.0038 27.3 11.2 9 193-201 232-240 (291)
182 PRK06975 bifunctional uroporph 56.5 29 0.00062 37.3 6.6 28 172-199 383-410 (656)
183 PF12238 MSA-2c: Merozoite sur 56.4 95 0.0021 29.5 9.2 21 156-176 6-26 (205)
184 PF14257 DUF4349: Domain of un 56.4 33 0.00071 32.0 6.3 34 172-205 160-193 (262)
185 PLN02678 seryl-tRNA synthetase 56.3 45 0.00098 34.6 7.8 63 144-210 38-100 (448)
186 COG3165 Uncharacterized protei 56.3 43 0.00093 31.8 6.9 66 139-210 134-201 (204)
187 PF04344 CheZ: Chemotaxis phos 56.2 1.3E+02 0.0029 28.0 10.1 117 124-240 13-159 (214)
188 PF09304 Cortex-I_coil: Cortex 56.2 79 0.0017 27.3 7.9 43 123-165 11-56 (107)
189 PF11559 ADIP: Afadin- and alp 56.1 1.3E+02 0.0028 25.8 13.7 88 121-209 28-115 (151)
190 KOG3385 V-SNARE [Intracellular 55.9 34 0.00073 30.0 5.7 68 150-222 33-100 (118)
191 cd07667 BAR_SNX30 The Bin/Amph 55.7 94 0.002 29.9 9.3 76 150-225 55-130 (240)
192 TIGR02894 DNA_bind_RsfA transc 55.6 1.7E+02 0.0037 26.9 11.5 84 142-225 61-148 (161)
193 PF04906 Tweety: Tweety; Inte 55.6 1.4E+02 0.003 30.4 10.9 87 99-187 73-162 (406)
194 PF06156 DUF972: Protein of un 55.4 54 0.0012 27.8 6.8 30 123-152 3-32 (107)
195 PF05377 FlaC_arch: Flagella a 55.4 26 0.00056 27.0 4.4 8 156-163 3-10 (55)
196 TIGR01010 BexC_CtrB_KpsE polys 55.3 2.1E+02 0.0045 27.9 13.8 85 122-206 164-260 (362)
197 PF10226 DUF2216: Uncharacteri 55.0 1.9E+02 0.0042 27.4 13.8 38 190-227 103-143 (195)
198 PF09177 Syntaxin-6_N: Syntaxi 54.5 1.1E+02 0.0025 24.6 10.0 8 197-204 86-93 (97)
199 TIGR00414 serS seryl-tRNA synt 54.5 1E+02 0.0022 31.3 9.8 66 143-212 34-100 (418)
200 smart00502 BBC B-Box C-termina 54.4 1.1E+02 0.0023 24.2 10.9 37 127-163 20-56 (127)
201 PRK05431 seryl-tRNA synthetase 54.0 66 0.0014 32.8 8.4 64 144-211 33-96 (425)
202 PRK15422 septal ring assembly 53.9 1.1E+02 0.0025 25.2 8.1 67 155-221 6-72 (79)
203 PF05791 Bacillus_HBL: Bacillu 53.9 1.4E+02 0.003 27.0 9.6 73 131-203 106-178 (184)
204 TIGR00634 recN DNA repair prot 53.8 86 0.0019 32.7 9.4 107 115-225 249-369 (563)
205 KOG4593 Mitotic checkpoint pro 53.6 1.8E+02 0.0039 32.3 11.9 100 124-223 115-214 (716)
206 PF07106 TBPIP: Tat binding pr 53.5 80 0.0017 27.7 7.9 20 189-208 117-136 (169)
207 PF09748 Med10: Transcription 53.5 1.3E+02 0.0027 26.0 8.9 45 127-171 2-51 (128)
208 PF00509 Hemagglutinin: Haemag 53.4 13 0.00029 39.5 3.5 62 120-181 363-431 (550)
209 PF05667 DUF812: Protein of un 53.2 1.2E+02 0.0025 32.8 10.3 90 124-213 397-486 (594)
210 KOG2196 Nuclear porin [Nuclear 53.1 1E+02 0.0022 30.2 9.0 70 141-210 84-156 (254)
211 PF05701 WEMBL: Weak chloropla 53.0 2.9E+02 0.0064 28.9 13.4 71 155-225 367-437 (522)
212 PF06009 Laminin_II: Laminin D 53.0 4.5 9.8E-05 34.8 0.0 36 178-213 49-84 (138)
213 PF10018 Med4: Vitamin-D-recep 52.7 81 0.0018 28.5 8.0 27 140-166 3-29 (188)
214 PF06005 DUF904: Protein of un 52.7 71 0.0015 25.4 6.7 63 137-206 9-71 (72)
215 PF10241 KxDL: Uncharacterized 52.7 1.2E+02 0.0026 24.5 8.2 54 133-186 23-76 (88)
216 PF02646 RmuC: RmuC family; I 52.7 69 0.0015 31.1 8.0 17 276-292 100-116 (304)
217 KOG0994 Extracellular matrix g 52.6 1.8E+02 0.004 34.6 12.1 49 178-226 1581-1629(1758)
218 PF04108 APG17: Autophagy prot 52.5 2.7E+02 0.0058 28.3 12.6 23 124-146 206-228 (412)
219 KOG1103 Predicted coiled-coil 52.4 2.1E+02 0.0046 29.9 11.6 55 158-212 243-297 (561)
220 PF12352 V-SNARE_C: Snare regi 52.4 91 0.002 23.1 7.0 44 155-198 10-53 (66)
221 KOG0976 Rho/Rac1-interacting s 52.2 1.4E+02 0.003 34.3 10.8 102 124-225 273-374 (1265)
222 KOG2391 Vacuolar sorting prote 52.2 1.7E+02 0.0038 30.0 10.8 69 116-185 217-285 (365)
223 PF02646 RmuC: RmuC family; I 52.1 83 0.0018 30.5 8.4 45 125-169 3-47 (304)
224 cd07622 BAR_SNX4 The Bin/Amphi 51.8 2E+02 0.0043 26.6 10.6 69 110-190 58-126 (201)
225 PRK11032 hypothetical protein; 51.8 71 0.0015 29.1 7.4 51 137-190 12-66 (160)
226 KOG0860 Synaptobrevin/VAMP-lik 51.8 1.7E+02 0.0036 25.7 9.3 68 152-219 28-95 (116)
227 PF06320 GCN5L1: GCN5-like pro 51.5 1.5E+02 0.0032 25.5 9.0 59 156-214 36-94 (121)
228 PF05384 DegS: Sensor protein 51.4 58 0.0012 29.5 6.7 49 154-202 7-55 (159)
229 PF05266 DUF724: Protein of un 51.3 2E+02 0.0044 26.5 10.9 61 147-207 125-185 (190)
230 PF02994 Transposase_22: L1 tr 51.2 38 0.00082 34.0 6.1 20 191-210 168-187 (370)
231 KOG0996 Structural maintenance 51.2 86 0.0019 36.7 9.4 81 143-224 960-1041(1293)
232 KOG0996 Structural maintenance 51.2 81 0.0018 36.9 9.2 83 137-219 396-478 (1293)
233 PF12761 End3: Actin cytoskele 51.1 1.4E+02 0.0029 28.3 9.3 28 178-205 157-184 (195)
234 TIGR02231 conserved hypothetic 50.9 1.7E+02 0.0037 30.1 10.9 84 126-209 69-173 (525)
235 PF06936 Selenoprotein_S: Sele 50.9 46 0.00099 31.0 6.2 63 93-156 35-97 (190)
236 PF03233 Cauli_AT: Aphid trans 50.9 35 0.00075 31.4 5.3 32 161-192 129-160 (163)
237 PLN02867 Probable galacturonos 50.7 68 0.0015 34.4 8.1 41 165-208 118-158 (535)
238 PF07439 DUF1515: Protein of u 50.6 86 0.0019 27.3 7.3 55 131-185 4-65 (112)
239 KOG0804 Cytoplasmic Zn-finger 50.5 1.2E+02 0.0025 32.3 9.5 40 135-174 364-403 (493)
240 PF06248 Zw10: Centromere/kine 50.3 2.2E+02 0.0047 30.0 11.7 80 127-208 28-109 (593)
241 PF10602 RPN7: 26S proteasome 50.3 48 0.001 29.6 6.1 58 143-202 4-61 (177)
242 cd07628 BAR_Atg24p The Bin/Amp 50.1 1.1E+02 0.0025 27.5 8.5 75 150-224 8-83 (185)
243 PF06013 WXG100: Proteins of 1 49.9 97 0.0021 22.5 7.8 9 150-158 29-37 (86)
244 PF15450 DUF4631: Domain of un 49.8 1.7E+02 0.0037 31.5 10.7 44 124-167 336-379 (531)
245 PF04791 LMBR1: LMBR1-like mem 49.6 87 0.0019 31.3 8.4 52 92-147 166-222 (471)
246 PF04778 LMP: LMP repeated reg 49.5 1.3E+02 0.0027 27.7 8.5 82 133-214 5-95 (157)
247 TIGR00634 recN DNA repair prot 49.5 1.1E+02 0.0024 31.9 9.4 44 124-167 269-315 (563)
248 TIGR02338 gimC_beta prefoldin, 49.4 38 0.00083 28.0 4.9 21 119-140 59-79 (110)
249 COG5143 SNC1 Synaptobrevin/VAM 49.2 67 0.0015 30.2 7.0 56 133-188 127-185 (190)
250 PF03962 Mnd1: Mnd1 family; I 49.0 2.1E+02 0.0046 26.1 10.9 38 113-153 57-94 (188)
251 PHA01750 hypothetical protein 48.8 36 0.00077 27.5 4.4 32 117-148 23-55 (75)
252 KOG4515 Uncharacterized conser 48.7 2.5E+02 0.0054 26.9 10.8 53 124-176 91-143 (217)
253 TIGR03818 MotA1 flagellar moto 48.3 93 0.002 30.3 8.1 93 94-188 5-106 (282)
254 TIGR02135 phoU_full phosphate 48.3 1.8E+02 0.0038 25.0 11.6 52 115-166 3-54 (212)
255 TIGR00383 corA magnesium Mg(2+ 48.3 1.4E+02 0.003 28.2 9.1 85 124-208 145-243 (318)
256 PF01920 Prefoldin_2: Prefoldi 48.3 51 0.0011 25.9 5.3 43 144-186 60-102 (106)
257 PF10779 XhlA: Haemolysin XhlA 48.3 58 0.0013 25.2 5.5 22 172-193 4-25 (71)
258 PF00038 Filament: Intermediat 48.2 2.4E+02 0.0053 26.6 12.0 69 145-213 67-135 (312)
259 PF12777 MT: Microtubule-bindi 48.2 75 0.0016 31.2 7.5 61 125-185 218-281 (344)
260 PF07888 CALCOCO1: Calcium bin 48.2 2.3E+02 0.005 30.6 11.5 34 177-210 286-319 (546)
261 KOG1029 Endocytic adaptor prot 48.1 49 0.0011 37.4 6.7 66 131-196 436-501 (1118)
262 PF04111 APG6: Autophagy prote 48.1 2.5E+02 0.0054 27.6 11.1 80 142-221 53-132 (314)
263 PHA03185 UL14 tegument protein 47.9 2.6E+02 0.0057 26.8 13.6 41 127-172 51-91 (214)
264 TIGR02492 flgK_ends flagellar 47.9 1.9E+02 0.0042 28.1 10.2 56 121-176 127-182 (322)
265 TIGR02231 conserved hypothetic 47.8 1.3E+02 0.0028 31.1 9.4 89 128-216 67-166 (525)
266 KOG3067 Translin family protei 47.8 1.1E+02 0.0024 29.3 8.2 100 132-231 6-110 (226)
267 COG1511 Predicted membrane pro 47.6 2E+02 0.0043 31.7 11.3 104 125-228 148-260 (780)
268 PF08580 KAR9: Yeast cortical 47.6 81 0.0018 34.5 8.3 46 113-158 12-59 (683)
269 PRK06569 F0F1 ATP synthase sub 47.6 2.2E+02 0.0047 25.8 9.8 49 141-189 36-84 (155)
270 PF04012 PspA_IM30: PspA/IM30 47.5 2.2E+02 0.0047 25.8 11.8 42 171-212 95-136 (221)
271 PF02520 DUF148: Domain of unk 47.3 1.1E+02 0.0023 25.2 7.2 45 123-167 42-86 (113)
272 PF06148 COG2: COG (conserved 46.9 49 0.0011 28.0 5.3 40 152-191 61-100 (133)
273 PF12732 YtxH: YtxH-like prote 46.6 58 0.0013 25.1 5.3 34 118-152 17-50 (74)
274 PRK10869 recombination and rep 46.4 1.2E+02 0.0026 32.0 9.1 106 114-223 241-362 (553)
275 KOG1298 Squalene monooxygenase 46.4 8.1 0.00018 40.4 0.6 18 9-26 48-69 (509)
276 COG0497 RecN ATPase involved i 46.3 1.2E+02 0.0025 32.8 9.0 113 114-226 242-366 (557)
277 COG4026 Uncharacterized protei 46.1 76 0.0017 31.1 7.0 15 28-43 17-31 (290)
278 PRK11091 aerobic respiration c 45.9 3.9E+02 0.0085 28.3 16.1 33 133-165 90-122 (779)
279 COG2959 HemX Uncharacterized e 45.7 1.4E+02 0.0031 30.9 9.1 57 99-164 43-101 (391)
280 PF04799 Fzo_mitofusin: fzo-li 45.6 1.3E+02 0.0027 27.9 8.1 57 132-188 102-165 (171)
281 PF06156 DUF972: Protein of un 45.6 35 0.00075 29.0 4.2 55 148-202 3-57 (107)
282 PF05802 EspB: Enterobacterial 45.6 2.3E+02 0.0049 28.6 10.2 63 147-209 148-210 (317)
283 PRK13729 conjugal transfer pil 45.2 42 0.00091 35.4 5.5 37 173-209 75-111 (475)
284 PF05739 SNARE: SNARE domain; 45.2 1.2E+02 0.0025 22.0 8.4 36 172-207 9-44 (63)
285 PF02994 Transposase_22: L1 tr 44.9 34 0.00075 34.2 4.7 24 182-205 166-189 (370)
286 cd07651 F-BAR_PombeCdc15_like 44.5 2.6E+02 0.0055 25.8 12.7 38 116-153 95-132 (236)
287 PF10883 DUF2681: Protein of u 44.4 24 0.00051 29.3 2.9 18 98-115 11-28 (87)
288 COG4717 Uncharacterized conser 44.3 2.8E+02 0.006 31.9 11.7 120 120-240 735-863 (984)
289 PF11945 WASH_WAHD: WAHD domai 44.1 1.1E+02 0.0023 30.3 7.9 55 128-182 18-72 (297)
290 PF03233 Cauli_AT: Aphid trans 44.1 1.7E+02 0.0037 27.0 8.6 21 191-211 138-158 (163)
291 PF07957 DUF3294: Protein of u 43.9 53 0.0012 31.4 5.5 66 147-221 5-78 (216)
292 PRK11519 tyrosine kinase; Prov 43.9 4.3E+02 0.0092 28.7 12.9 27 126-152 265-291 (719)
293 PRK04098 sec-independent trans 43.7 2.5E+02 0.0054 25.7 9.6 51 122-172 39-93 (158)
294 cd07667 BAR_SNX30 The Bin/Amph 43.7 3.1E+02 0.0067 26.5 13.5 31 124-154 103-133 (240)
295 PF06730 FAM92: FAM92 protein; 43.6 3.1E+02 0.0066 26.4 10.8 76 125-204 15-95 (219)
296 PF09738 DUF2051: Double stran 43.5 62 0.0014 32.0 6.2 61 144-204 103-163 (302)
297 TIGR00414 serS seryl-tRNA synt 43.4 1.1E+02 0.0023 31.3 8.0 71 153-223 30-104 (418)
298 COG1283 NptA Na+/phosphate sym 43.4 2.4E+02 0.0052 30.3 10.8 97 123-226 337-449 (533)
299 PF04100 Vps53_N: Vps53-like, 43.4 3.5E+02 0.0077 27.3 11.6 65 120-184 14-95 (383)
300 cd07624 BAR_SNX7_30 The Bin/Am 43.0 1.6E+02 0.0036 26.7 8.4 70 150-219 18-87 (200)
301 PF06009 Laminin_II: Laminin D 43.0 8 0.00017 33.3 0.0 66 152-217 16-81 (138)
302 COG1463 Ttg2C ABC-type transpo 43.0 3.4E+02 0.0074 26.8 13.2 85 133-217 216-300 (359)
303 TIGR02977 phageshock_pspA phag 42.6 2.8E+02 0.006 25.6 10.3 89 122-214 93-185 (219)
304 PF02403 Seryl_tRNA_N: Seryl-t 42.5 1.8E+02 0.0039 23.4 10.1 73 151-223 27-102 (108)
305 PRK10361 DNA recombination pro 42.4 4.1E+02 0.0089 28.2 12.1 34 260-293 216-250 (475)
306 PRK01919 tatB sec-independent 42.4 1.8E+02 0.0038 27.0 8.4 32 124-155 23-54 (169)
307 PF13094 CENP-Q: CENP-Q, a CEN 42.3 1.5E+02 0.0032 25.8 7.8 47 165-211 39-85 (160)
308 PF10234 Cluap1: Clusterin-ass 42.2 1.9E+02 0.0042 28.4 9.2 76 130-206 126-201 (267)
309 PF10152 DUF2360: Predicted co 42.1 98 0.0021 27.3 6.6 29 180-208 20-48 (148)
310 KOG2629 Peroxisomal membrane a 41.9 1.1E+02 0.0023 30.7 7.5 21 237-257 200-220 (300)
311 COG0598 CorA Mg2+ and Co2+ tra 41.6 3.4E+02 0.0073 26.3 11.6 92 117-208 143-247 (322)
312 PF10211 Ax_dynein_light: Axon 41.6 2.8E+02 0.0061 25.4 9.9 22 185-206 167-188 (189)
313 TIGR01000 bacteriocin_acc bact 41.3 2.6E+02 0.0057 28.3 10.4 13 14-26 67-79 (457)
314 PF10392 COG5: Golgi transport 41.2 2.1E+02 0.0045 24.4 8.3 48 127-174 25-72 (132)
315 PF04012 PspA_IM30: PspA/IM30 41.0 1.9E+02 0.0042 26.1 8.6 15 61-75 28-42 (221)
316 PLN02320 seryl-tRNA synthetase 41.0 1.5E+02 0.0032 31.5 8.8 92 110-210 63-159 (502)
317 COG5185 HEC1 Protein involved 40.8 1.6E+02 0.0034 31.8 8.8 99 109-207 361-513 (622)
318 PF04108 APG17: Autophagy prot 40.8 2.8E+02 0.006 28.2 10.4 30 124-153 202-231 (412)
319 PHA03395 p10 fibrous body prot 40.7 79 0.0017 26.4 5.4 9 155-163 13-21 (87)
320 PRK09039 hypothetical protein; 40.7 3.8E+02 0.0083 26.7 13.0 23 288-311 265-287 (343)
321 TIGR01005 eps_transp_fam exopo 40.6 5E+02 0.011 28.0 13.8 15 61-75 199-213 (754)
322 PF14817 HAUS5: HAUS augmin-li 40.6 2.2E+02 0.0047 31.2 10.1 80 148-227 81-160 (632)
323 PF13805 Pil1: Eisosome compon 40.4 3.8E+02 0.0082 26.5 12.4 80 127-210 95-180 (271)
324 TIGR03007 pepcterm_ChnLen poly 40.4 3.9E+02 0.0085 27.0 11.4 15 61-75 166-180 (498)
325 PRK11677 hypothetical protein; 40.3 1.4E+02 0.003 26.4 7.2 42 138-179 32-73 (134)
326 PF10267 Tmemb_cc2: Predicted 40.3 3.9E+02 0.0085 27.6 11.4 81 128-208 219-318 (395)
327 KOG0994 Extracellular matrix g 40.2 1.5E+02 0.0032 35.3 9.0 68 137-208 1227-1294(1758)
328 COG1463 Ttg2C ABC-type transpo 40.0 2E+02 0.0043 28.4 9.1 13 215-227 267-279 (359)
329 KOG1924 RhoA GTPase effector D 40.0 5.2E+02 0.011 29.8 12.9 130 150-284 369-558 (1102)
330 TIGR02976 phageshock_pspB phag 39.9 19 0.00041 29.0 1.7 44 118-164 24-67 (75)
331 TIGR01834 PHA_synth_III_E poly 39.9 1.9E+02 0.0041 29.2 8.9 22 187-208 288-309 (320)
332 COG5665 NOT5 CCR4-NOT transcri 39.9 3E+02 0.0065 29.1 10.5 44 126-175 117-160 (548)
333 PF03915 AIP3: Actin interacti 39.9 4.6E+02 0.0099 27.4 12.8 66 120-185 205-271 (424)
334 KOG4603 TBP-1 interacting prot 39.8 1.5E+02 0.0033 28.0 7.6 59 151-209 84-144 (201)
335 KOG0161 Myosin class II heavy 39.6 5.4E+02 0.012 32.0 13.8 45 119-163 899-946 (1930)
336 PRK15396 murein lipoprotein; P 39.5 92 0.002 25.3 5.5 36 151-186 30-65 (78)
337 PF07106 TBPIP: Tat binding pr 39.4 96 0.0021 27.2 6.2 60 125-188 76-137 (169)
338 PLN03223 Polycystin cation cha 39.3 1.5E+02 0.0033 35.6 9.1 91 122-217 767-859 (1634)
339 PRK01156 chromosome segregatio 39.3 3.3E+02 0.0072 29.8 11.4 25 136-160 163-187 (895)
340 PF10174 Cast: RIM-binding pro 39.2 3.2E+02 0.0069 30.7 11.2 82 126-207 313-404 (775)
341 PF05549 Allexi_40kDa: Allexiv 39.1 3E+02 0.0065 27.3 9.9 34 263-299 166-206 (271)
342 PF06120 Phage_HK97_TLTM: Tail 39.0 4.1E+02 0.0089 26.6 12.4 31 175-205 142-172 (301)
343 TIGR02132 phaR_Bmeg polyhydrox 39.0 1.4E+02 0.0031 28.1 7.4 19 171-189 111-129 (189)
344 TIGR02680 conserved hypothetic 39.0 4.7E+02 0.01 30.8 13.1 43 169-211 923-965 (1353)
345 cd04786 HTH_MerR-like_sg7 Heli 39.0 1.1E+02 0.0023 26.4 6.2 19 190-208 94-112 (131)
346 cd07621 BAR_SNX5_6 The Bin/Amp 39.0 1.4E+02 0.003 28.4 7.4 76 118-196 49-125 (219)
347 TIGR03007 pepcterm_ChnLen poly 38.8 2.1E+02 0.0046 28.8 9.3 31 123-153 156-186 (498)
348 cd00024 CHROMO Chromatin organ 38.7 31 0.00067 24.0 2.5 25 105-129 21-45 (55)
349 PF05266 DUF724: Protein of un 38.7 3.2E+02 0.007 25.2 9.9 15 61-75 48-62 (190)
350 PF05377 FlaC_arch: Flagella a 38.4 84 0.0018 24.2 4.9 11 153-163 7-17 (55)
351 PF04880 NUDE_C: NUDE protein, 38.3 42 0.00091 30.7 3.8 27 253-279 95-121 (166)
352 KOG1961 Vacuolar sorting prote 38.2 1.4E+02 0.003 32.9 8.1 53 150-202 72-124 (683)
353 PRK11085 magnesium/nickel/coba 38.2 4.1E+02 0.0088 26.3 11.9 22 124-145 142-163 (316)
354 PF09763 Sec3_C: Exocyst compl 38.2 1.7E+02 0.0037 31.4 8.9 66 138-203 8-73 (701)
355 PRK11115 transcriptional regul 38.1 3E+02 0.0065 24.7 9.3 46 121-166 20-65 (236)
356 PRK10920 putative uroporphyrin 38.1 90 0.0019 32.0 6.5 91 86-180 34-126 (390)
357 KOG0809 SNARE protein TLG2/Syn 38.0 2.5E+02 0.0054 28.3 9.3 102 123-224 134-272 (305)
358 PF15290 Syntaphilin: Golgi-lo 37.8 3.3E+02 0.0071 27.5 10.0 49 159-207 88-143 (305)
359 cd07647 F-BAR_PSTPIP The F-BAR 37.8 3.4E+02 0.0073 25.2 10.9 41 119-159 97-137 (239)
360 PF12777 MT: Microtubule-bindi 37.7 2.5E+02 0.0054 27.6 9.3 9 101-109 194-202 (344)
361 PF04124 Dor1: Dor1-like famil 37.6 4E+02 0.0087 26.0 11.1 68 143-210 18-89 (338)
362 COG3352 FlaC Putative archaeal 37.6 2.1E+02 0.0045 26.3 8.0 80 114-194 62-142 (157)
363 PF09403 FadA: Adhesion protei 37.5 2.8E+02 0.0062 24.3 12.0 84 124-207 23-112 (126)
364 PF02388 FemAB: FemAB family; 37.5 70 0.0015 32.1 5.6 35 119-153 233-267 (406)
365 COG2433 Uncharacterized conser 37.4 2.3E+02 0.0049 31.2 9.5 72 135-206 418-492 (652)
366 PF05384 DegS: Sensor protein 37.3 1.6E+02 0.0034 26.8 7.3 48 147-194 99-146 (159)
367 PF08172 CASP_C: CASP C termin 37.3 1.1E+02 0.0023 29.5 6.5 44 139-182 79-122 (248)
368 KOG4559 Uncharacterized conser 37.2 1.2E+02 0.0025 26.5 6.1 49 125-173 58-106 (120)
369 COG1579 Zn-ribbon protein, pos 37.1 4E+02 0.0086 25.8 12.3 29 155-183 105-133 (239)
370 COG3910 Predicted ATPase [Gene 37.1 43 0.00093 32.3 3.8 44 64-114 25-70 (233)
371 PHA00276 phage lambda Rz-like 37.0 1.6E+02 0.0034 26.8 7.1 31 161-191 50-80 (144)
372 PF12352 V-SNARE_C: Snare regi 36.9 1.7E+02 0.0037 21.6 7.7 34 161-201 30-63 (66)
373 PF10186 Atg14: UV radiation r 36.7 3.4E+02 0.0073 24.9 13.3 46 150-195 60-105 (302)
374 PF08702 Fib_alpha: Fibrinogen 36.6 3E+02 0.0066 24.3 12.2 44 140-183 23-66 (146)
375 PRK13169 DNA replication intia 36.5 1.5E+02 0.0031 25.5 6.6 32 122-153 2-33 (110)
376 PF03962 Mnd1: Mnd1 family; I 36.5 3.4E+02 0.0073 24.8 9.6 32 118-149 66-97 (188)
377 COG4477 EzrA Negative regulato 36.2 4.1E+02 0.0088 29.0 11.0 79 103-182 236-338 (570)
378 PF10191 COG7: Golgi complex c 36.1 3.3E+02 0.0071 30.1 10.8 64 128-191 38-101 (766)
379 PRK04863 mukB cell division pr 36.1 5.7E+02 0.012 30.8 13.2 15 61-75 235-249 (1486)
380 KOG3758 Uncharacterized conser 36.1 3.2E+02 0.0069 30.2 10.3 80 123-205 51-130 (655)
381 PRK10807 paraquat-inducible pr 36.0 1.2E+02 0.0026 32.1 7.3 22 141-162 438-459 (547)
382 PF06825 HSBP1: Heat shock fac 36.0 1.1E+02 0.0023 23.4 5.1 33 135-167 10-42 (54)
383 PRK04654 sec-independent trans 36.0 3.3E+02 0.0072 26.2 9.4 33 124-156 23-55 (214)
384 PRK12482 flagellar motor prote 36.0 2.1E+02 0.0045 28.2 8.4 93 94-188 5-106 (287)
385 PF11802 CENP-K: Centromere-as 35.8 4.3E+02 0.0094 26.2 10.5 113 61-211 57-170 (268)
386 PF12128 DUF3584: Protein of u 35.7 3.9E+02 0.0085 30.9 11.7 84 127-210 287-381 (1201)
387 KOG0978 E3 ubiquitin ligase in 35.7 4.2E+02 0.0092 29.5 11.4 84 124-207 534-620 (698)
388 KOG4670 Uncharacterized conser 35.7 47 0.001 35.7 4.2 82 139-223 368-451 (602)
389 PF02520 DUF148: Domain of unk 35.6 1.2E+02 0.0026 24.9 5.9 14 121-134 29-42 (113)
390 PHA03395 p10 fibrous body prot 35.4 1.5E+02 0.0032 24.9 6.2 22 127-148 10-31 (87)
391 KOG2199 Signal transducing ada 35.4 1.3E+02 0.0028 31.7 7.1 29 188-216 317-345 (462)
392 PF10267 Tmemb_cc2: Predicted 35.3 5.3E+02 0.011 26.7 13.1 33 143-175 223-256 (395)
393 KOG3595 Dyneins, heavy chain [ 35.3 3.5E+02 0.0076 32.0 11.3 19 115-133 894-912 (1395)
394 PTZ00446 vacuolar sorting prot 35.2 2.5E+02 0.0054 26.3 8.4 33 135-169 111-143 (191)
395 PF00957 Synaptobrevin: Synapt 35.1 2.2E+02 0.0048 22.3 9.6 19 133-151 8-26 (89)
396 PF06705 SF-assemblin: SF-asse 35.0 3.8E+02 0.0082 25.0 12.8 36 124-159 88-123 (247)
397 PF12329 TMF_DNA_bd: TATA elem 35.0 2.3E+02 0.0049 22.4 8.5 61 159-219 4-64 (74)
398 PRK09343 prefoldin subunit bet 34.9 96 0.0021 26.4 5.3 45 119-175 63-107 (121)
399 PF00957 Synaptobrevin: Synapt 34.8 2.2E+02 0.0048 22.2 8.0 24 136-159 4-27 (89)
400 PF00261 Tropomyosin: Tropomyo 34.8 3.8E+02 0.0082 24.9 12.9 71 122-192 79-159 (237)
401 TIGR03752 conj_TIGR03752 integ 34.8 2.7E+02 0.006 29.6 9.5 57 146-208 87-143 (472)
402 cd00179 SynN Syntaxin N-termin 34.7 1E+02 0.0023 25.7 5.5 16 193-208 53-68 (151)
403 PF05478 Prominin: Prominin; 34.6 3.6E+02 0.0078 29.8 10.8 34 118-151 159-196 (806)
404 KOG3990 Uncharacterized conser 34.5 1.3E+02 0.0029 29.8 6.8 52 154-206 233-285 (305)
405 PF15112 DUF4559: Domain of un 34.5 98 0.0021 31.1 5.9 75 120-194 203-284 (307)
406 PLN02678 seryl-tRNA synthetase 34.3 3.9E+02 0.0084 27.9 10.4 86 136-223 14-106 (448)
407 smart00298 CHROMO Chromatin or 34.3 48 0.001 22.8 2.9 24 105-128 19-42 (55)
408 PF05508 Ran-binding: RanGTP-b 34.3 2.6E+02 0.0056 28.1 8.8 47 120-166 15-69 (302)
409 PRK10246 exonuclease subunit S 34.1 4E+02 0.0087 30.3 11.3 69 126-194 782-856 (1047)
410 PF02302 PTS_IIB: PTS system, 34.0 13 0.00027 28.5 -0.2 18 7-24 1-18 (90)
411 PLN02320 seryl-tRNA synthetase 34.0 1.5E+02 0.0032 31.6 7.5 30 192-221 134-163 (502)
412 PLN03094 Substrate binding sub 33.9 1.2E+02 0.0026 30.9 6.6 14 34-47 232-245 (370)
413 TIGR00606 rad50 rad50. This fa 33.7 4E+02 0.0086 31.0 11.4 43 151-193 222-264 (1311)
414 KOG0804 Cytoplasmic Zn-finger 33.6 4.2E+02 0.0092 28.3 10.5 75 131-208 367-441 (493)
415 cd07649 F-BAR_GAS7 The F-BAR ( 33.5 4.2E+02 0.0091 25.0 12.5 109 119-227 98-212 (233)
416 PF08614 ATG16: Autophagy prot 33.3 2.6E+02 0.0056 25.2 8.1 53 142-194 119-171 (194)
417 COG1392 Phosphate transport re 33.3 4.2E+02 0.009 24.9 10.9 96 134-230 86-198 (217)
418 PF14182 YgaB: YgaB-like prote 33.2 2.8E+02 0.0061 22.9 7.6 47 152-198 13-64 (79)
419 PF04977 DivIC: Septum formati 33.2 1.3E+02 0.0029 22.3 5.4 30 150-179 21-50 (80)
420 PF06013 WXG100: Proteins of 1 33.2 1.9E+02 0.0041 20.9 9.7 28 137-164 9-36 (86)
421 COG1730 GIM5 Predicted prefold 33.2 66 0.0014 28.8 4.2 62 99-162 61-131 (145)
422 KOG4674 Uncharacterized conser 33.2 6.7E+02 0.015 31.1 13.2 76 125-203 777-852 (1822)
423 PF14257 DUF4349: Domain of un 33.1 1.3E+02 0.0029 28.0 6.4 27 172-198 167-193 (262)
424 KOG0995 Centromere-associated 33.0 5.8E+02 0.013 27.9 11.6 27 115-141 215-241 (581)
425 PF02181 FH2: Formin Homology 32.9 2.8E+02 0.0061 26.9 8.8 65 162-226 276-347 (370)
426 PRK07739 flgK flagellar hook-a 32.9 3.5E+02 0.0076 28.2 9.9 56 121-176 139-194 (507)
427 PF01996 F420_ligase: F420-0:G 32.8 7.4 0.00016 36.5 -1.9 73 62-135 133-210 (228)
428 COG2605 Predicted kinase relat 32.8 1.9E+02 0.004 29.5 7.6 84 139-235 200-283 (333)
429 KOG0517 Beta-spectrin [Cytoske 32.7 2.5E+02 0.0055 35.0 9.6 71 141-212 918-1008(2473)
430 PF13874 Nup54: Nucleoporin co 32.5 1.7E+02 0.0037 25.3 6.5 69 124-192 54-125 (141)
431 KOG0995 Centromere-associated 32.4 3.8E+02 0.0083 29.3 10.2 78 124-205 290-370 (581)
432 cd07630 BAR_SNX_like The Bin/A 32.3 2.2E+02 0.0047 26.3 7.5 80 117-196 28-108 (198)
433 PHA03332 membrane glycoprotein 32.2 4.5E+02 0.0097 31.1 11.1 38 166-203 922-963 (1328)
434 PF04678 DUF607: Protein of un 31.9 1.3E+02 0.0027 27.2 5.8 51 126-177 38-88 (180)
435 PRK05683 flgK flagellar hook-a 31.9 3.9E+02 0.0084 29.3 10.4 59 121-179 127-185 (676)
436 PF01494 FAD_binding_3: FAD bi 31.9 15 0.00032 33.3 -0.1 14 9-22 4-17 (356)
437 PRK06665 flgK flagellar hook-a 31.9 3.5E+02 0.0075 29.2 9.9 59 121-179 139-197 (627)
438 PRK13293 F420-0--gamma-glutamy 31.6 38 0.00081 32.8 2.5 73 63-135 127-203 (245)
439 PF00732 GMC_oxred_N: GMC oxid 31.5 15 0.00033 33.6 -0.1 15 9-23 3-17 (296)
440 KOG4677 Golgi integral membran 31.5 4.9E+02 0.011 28.0 10.6 74 139-212 249-347 (554)
441 cd07307 BAR The Bin/Amphiphysi 31.4 2.9E+02 0.0064 22.6 10.2 26 175-200 95-120 (194)
442 PF03908 Sec20: Sec20; InterP 31.4 2.7E+02 0.0059 22.2 9.2 74 147-221 2-75 (92)
443 PF02346 Vac_Fusion: Chordopox 31.2 1.6E+02 0.0034 22.8 5.4 51 155-205 3-53 (57)
444 PRK10499 PTS system N,N'-diace 31.1 27 0.00059 29.0 1.3 68 7-85 5-82 (106)
445 KOG0018 Structural maintenance 31.1 3E+02 0.0066 32.2 9.6 86 115-209 668-753 (1141)
446 PF06825 HSBP1: Heat shock fac 31.0 1.4E+02 0.0031 22.7 5.1 38 130-167 12-49 (54)
447 PF13747 DUF4164: Domain of un 31.0 3E+02 0.0064 22.5 9.9 51 170-220 35-85 (89)
448 cd00176 SPEC Spectrin repeats, 30.8 3.1E+02 0.0068 22.7 9.0 52 177-229 75-126 (213)
449 KOG2196 Nuclear porin [Nuclear 30.7 2.3E+02 0.0049 27.9 7.6 29 134-162 129-157 (254)
450 PF12795 MscS_porin: Mechanose 30.7 4.4E+02 0.0095 24.4 10.0 55 151-205 83-137 (240)
451 COG0497 RecN ATPase involved i 30.7 3E+02 0.0066 29.8 9.2 180 37-231 189-379 (557)
452 PRK07191 flgK flagellar hook-a 30.6 4.1E+02 0.0089 27.2 9.9 56 121-176 127-182 (456)
453 PRK13169 DNA replication intia 30.6 1.1E+02 0.0024 26.2 5.0 53 148-200 3-55 (110)
454 PF15079 DUF4546: Domain of un 30.6 2.3E+02 0.0049 26.8 7.2 55 149-213 50-104 (205)
455 PF05911 DUF869: Plant protein 30.5 4.3E+02 0.0094 29.7 10.6 91 137-230 29-120 (769)
456 PF15070 GOLGA2L5: Putative go 30.5 7.5E+02 0.016 27.0 12.9 22 145-166 42-63 (617)
457 PF13863 DUF4200: Domain of un 30.3 3.1E+02 0.0067 22.5 10.9 81 130-210 23-103 (126)
458 PF05667 DUF812: Protein of un 30.3 4.1E+02 0.0089 28.8 10.1 34 154-187 343-376 (594)
459 PF03961 DUF342: Protein of un 30.3 2.5E+02 0.0055 28.5 8.3 26 125-150 331-356 (451)
460 COG2096 cob(I)alamin adenosylt 30.1 1.4E+02 0.003 28.0 5.8 64 137-209 38-102 (184)
461 COG4980 GvpP Gas vesicle prote 30.1 3.7E+02 0.0081 23.4 8.8 19 183-201 92-110 (115)
462 PF14728 PHTB1_C: PTHB1 C-term 30.0 5E+02 0.011 26.5 10.3 76 120-199 210-293 (377)
463 KOG0963 Transcription factor/C 30.0 5.3E+02 0.012 28.5 10.8 74 136-209 179-263 (629)
464 cd07655 F-BAR_PACSIN The F-BAR 30.0 4.8E+02 0.01 24.6 10.0 33 122-154 113-145 (258)
465 COG5185 HEC1 Protein involved 30.0 5.9E+02 0.013 27.7 10.9 92 131-223 274-375 (622)
466 COG4026 Uncharacterized protei 29.8 5.6E+02 0.012 25.4 10.9 40 184-223 159-198 (290)
467 PHA02414 hypothetical protein 29.7 1.4E+02 0.0031 25.7 5.4 62 151-222 9-70 (111)
468 KOG3091 Nuclear pore complex, 29.7 2.4E+02 0.0051 30.3 8.0 64 149-212 337-400 (508)
469 PRK10778 dksA RNA polymerase-b 29.5 1.2E+02 0.0026 27.1 5.2 48 109-156 6-56 (151)
470 PF05276 SH3BP5: SH3 domain-bi 29.5 5.2E+02 0.011 24.9 10.4 82 127-208 20-111 (239)
471 PF13514 AAA_27: AAA domain 29.3 3.1E+02 0.0067 31.2 9.5 92 142-238 892-983 (1111)
472 PF05278 PEARLI-4: Arabidopsis 29.3 5.7E+02 0.012 25.3 12.4 60 169-228 202-261 (269)
473 PRK09458 pspB phage shock prot 29.3 38 0.00082 27.6 1.8 44 118-164 24-67 (75)
474 PRK05431 seryl-tRNA synthetase 29.2 1.9E+02 0.0042 29.5 7.3 71 154-224 29-102 (425)
475 COG1340 Uncharacterized archae 29.2 6E+02 0.013 25.5 12.5 69 137-205 53-124 (294)
476 PRK00290 dnaK molecular chaper 29.1 4E+02 0.0087 28.2 9.8 68 141-210 522-594 (627)
477 COG0598 CorA Mg2+ and Co2+ tra 29.1 1.4E+02 0.003 28.9 5.9 72 135-206 180-252 (322)
478 PRK09303 adaptive-response sen 29.0 1.3E+02 0.0028 29.1 5.8 19 168-186 158-176 (380)
479 KOG0977 Nuclear envelope prote 28.9 3.7E+02 0.0079 29.1 9.4 46 150-195 145-190 (546)
480 cd00089 HR1 Protein kinase C-r 28.9 2.6E+02 0.0057 21.3 6.6 59 148-208 4-62 (72)
481 PF05055 DUF677: Protein of un 28.9 3.6E+02 0.0078 27.2 8.9 105 97-210 212-317 (336)
482 smart00397 t_SNARE Helical reg 28.8 2.1E+02 0.0045 20.1 7.1 26 153-178 12-37 (66)
483 PF10212 TTKRSYEDQ: Predicted 28.8 4.5E+02 0.0097 28.4 9.9 38 147-184 414-451 (518)
484 COG5173 SEC6 Exocyst complex s 28.7 7.2E+02 0.016 27.7 11.4 72 152-226 35-108 (742)
485 PF09440 eIF3_N: eIF3 subunit 28.4 3E+02 0.0065 24.1 7.4 86 122-225 42-130 (133)
486 KOG0977 Nuclear envelope prote 28.4 4.9E+02 0.011 28.2 10.2 94 115-208 86-189 (546)
487 PF07544 Med9: RNA polymerase 28.2 1.3E+02 0.0028 24.1 4.7 57 131-188 24-80 (83)
488 KOG0979 Structural maintenance 28.2 5.4E+02 0.012 30.1 10.9 34 173-206 296-329 (1072)
489 PF05164 ZapA: Cell division p 28.0 1.7E+02 0.0037 22.4 5.2 35 129-163 53-89 (89)
490 PF14661 HAUS6_N: HAUS augmin- 27.9 5.1E+02 0.011 24.3 9.8 87 126-212 144-245 (247)
491 KOG0946 ER-Golgi vesicle-tethe 27.9 1.4E+02 0.0031 33.9 6.4 81 135-215 809-889 (970)
492 cd07623 BAR_SNX1_2 The Bin/Amp 27.9 3.9E+02 0.0084 24.7 8.4 81 117-199 36-117 (224)
493 KOG0811 SNARE protein PEP12/VA 27.8 2.6E+02 0.0055 27.5 7.5 97 120-218 126-224 (269)
494 PF07851 TMPIT: TMPIT-like pro 27.8 3E+02 0.0064 27.9 8.1 66 122-187 19-88 (330)
495 KOG2911 Uncharacterized conser 27.8 6.1E+02 0.013 26.9 10.5 88 125-213 237-359 (439)
496 PF12329 TMF_DNA_bd: TATA elem 27.8 3.1E+02 0.0066 21.7 6.7 60 149-208 15-74 (74)
497 PF10828 DUF2570: Protein of u 27.5 3.6E+02 0.0078 22.4 7.5 60 151-210 23-82 (110)
498 PRK08124 flagellar motor prote 27.4 5.1E+02 0.011 24.9 9.3 130 94-225 7-154 (263)
499 PHA03332 membrane glycoprotein 27.4 8.5E+02 0.018 29.0 12.2 119 126-245 910-1029(1328)
500 PRK08147 flgK flagellar hook-a 27.3 4.9E+02 0.011 27.3 9.9 85 121-205 128-214 (547)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=1e-58 Score=394.33 Aligned_cols=120 Identities=48% Similarity=0.775 Sum_probs=116.5
Q ss_pred chhHH-HHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 020255 92 KKYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (328)
Q Consensus 92 ~~y~l-~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~ 170 (328)
..|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|+|+++
T Consensus 6 ~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 6 SSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred cchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
+|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.96 E-value=0.0018 Score=53.92 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=45.3
Q ss_pred hHHHHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 020255 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT- 172 (328)
Q Consensus 94 y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i- 172 (328)
++++.++.+++|++.||+ ++- =||+|..+.. |.+|+++.|.++++...-.+.+
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555667777777774 222 3777655543 2333334444444443333444
Q ss_pred -HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 173 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 173 -~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+++|..++..++++.+|++.+..-+.+++-.++.+
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444433
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.95 E-value=0.27 Score=45.66 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=74.3
Q ss_pred heeeEEe----cCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 104 GYgYmwW----KGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
||+++.- .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++.......+++|-..+
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888873 378 55555566778999999999999999999999999999999999888888776666666665555
Q ss_pred hhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 180 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+ .+++..+.-++.|+.+++.+..+
T Consensus 145 ~-------~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 K-------NQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555666666666776666654
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.85 E-value=0.088 Score=52.03 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.4
Q ss_pred hhhheeeEEe
Q 020255 101 VAVGYGYVWW 110 (328)
Q Consensus 101 GavGYgYmwW 110 (328)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 6678887767
No 5
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.065 Score=52.54 Aligned_cols=71 Identities=17% Similarity=0.420 Sum_probs=36.4
Q ss_pred hhHH-HHHHhhhhee-eEEecCCCcCchhhhhhhh--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 020255 93 KYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRRS--------LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (328)
Q Consensus 93 ~y~l-~a~iGavGYg-YmwWKGws~SDlMfVTKRn--------MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~kl 162 (328)
-|++ +++.+++-|+ |-.||-| +-=+||.-.++ |.+=...+.|-+.++-+.++..++.++..-+.++..|
T Consensus 85 dy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L 163 (300)
T KOG2629|consen 85 DYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRAL 163 (300)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5766 4455667774 8889999 44456655444 3333334444444444444444444444333333333
Q ss_pred HH
Q 020255 163 NK 164 (328)
Q Consensus 163 De 164 (328)
++
T Consensus 164 ~~ 165 (300)
T KOG2629|consen 164 AS 165 (300)
T ss_pred HH
Confidence 33
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.57 E-value=0.24 Score=42.02 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
=|||++-+...=.+--.-|..+-..+... ....+|+-|..+.+.|-|-++..+.++. .-|.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 39999998866544444455554444432 3444555555555555555555555554 44555666777777
Q ss_pred HHHHHHHHhhh
Q 020255 199 TLESKLIEIEG 209 (328)
Q Consensus 199 ~Le~Ki~~ie~ 209 (328)
.+..+||+||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77788888874
No 7
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.43 E-value=1.3 Score=34.99 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=57.1
Q ss_pred hHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 136 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 136 qLeqVs~s---LaaaKrhLsqRId~vD~klDeq~eis~~i--~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.|+++.+. +.....+|..+|+.+..+|+++.++.... -+.+. -..++.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 45567899999999999999999966544 34444 888999999999999999999999998775
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.42 E-value=3.1 Score=39.19 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 126 MsnAvasvtKqLe-qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
|++|...|-.+.+ .+...-..+......+|+.+........+.....++|+.+++..+.....++++++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 8889998888877 445566688888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhH
Q 020255 205 IEIEGKQDITTL 216 (328)
Q Consensus 205 ~~ie~kQd~Tn~ 216 (328)
..++..-+....
T Consensus 247 ~~le~~~~~~~~ 258 (312)
T PF00038_consen 247 RELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988865544433
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.07 E-value=1.1 Score=45.28 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=62.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 132 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
.+..++++....+...++.+...|+.+..++++.....+.++.++..++.++.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555566666677888888888888888888888889999999888888888888888888887777665
Q ss_pred hhhhHH
Q 020255 212 DITTLG 217 (328)
Q Consensus 212 d~Tn~G 217 (328)
+.....
T Consensus 272 ~~~~~~ 277 (562)
T PHA02562 272 EQFQKV 277 (562)
T ss_pred HHHHHH
Confidence 444433
No 10
>PRK11637 AmiB activator; Provisional
Probab=93.03 E-value=1.3 Score=44.07 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLa---aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
..+=...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444 334445566666666666666666666666666666666666666666655555554
Q ss_pred HHH
Q 020255 203 KLI 205 (328)
Q Consensus 203 Ki~ 205 (328)
.+.
T Consensus 125 ~l~ 127 (428)
T PRK11637 125 LLA 127 (428)
T ss_pred HHH
Confidence 443
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.54 E-value=3 Score=38.80 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=57.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
+++.++......+..+..+||+..++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677788888888888888888888888888777777777777777777777777777777775543
No 12
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.22 E-value=0.18 Score=50.06 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
.+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.......++..|..+..|+.+.+.||-...-.|..|
T Consensus 66 ~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdL 145 (326)
T PF04582_consen 66 QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDL 145 (326)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhH
Confidence 3445555555555555555444443 3566677777777777777778888888888888888888888888888888
Q ss_pred HHHHHHhhhh
Q 020255 201 ESKLIEIEGK 210 (328)
Q Consensus 201 e~Ki~~ie~k 210 (328)
|.++..+|..
T Consensus 146 e~RV~~LEs~ 155 (326)
T PF04582_consen 146 ESRVKALESG 155 (326)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 8888888865
No 13
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=91.54 E-value=4.2 Score=35.56 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~ 173 (328)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....-+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998876655544333
No 14
>PRK11637 AmiB activator; Provisional
Probab=91.54 E-value=1.7 Score=43.35 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+.+-++|+++...|...++.+. .++..+..++++..+-...+.+++..++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766666665 6666666666666666666666666666666666666666666666666666655
Q ss_pred h
Q 020255 208 E 208 (328)
Q Consensus 208 e 208 (328)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 5
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.34 E-value=3.5 Score=36.03 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~ 177 (328)
+++-+=.|||.|+.=...|..+||+.-|-...+|++++
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566777766666666666666666666666543
No 16
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=91.31 E-value=0.87 Score=46.13 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCchhHH--HHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 90 GAKKYGV--IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 90 gg~~y~l--~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
+|..+++ ++++-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~ 103 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ 103 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 23344777777666 21 11112344444455555555444444444444444444333333
No 17
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.80 E-value=2.7 Score=33.32 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHhhcc-CCCccceecccc
Q 020255 212 DITTLGVKKLCDRARELEN-GRPTELVQASRY 242 (328)
Q Consensus 212 d~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~s 242 (328)
......+..+|.|++..-. +...+++|...+
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~ 116 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLLSKKL 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3456778888988876544 455677776543
No 18
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=90.72 E-value=15 Score=37.33 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=4.8
Q ss_pred ccccccCCCCC
Q 020255 245 SRTTLELPGIT 255 (328)
Q Consensus 245 ~~pale~~~~~ 255 (328)
.+|+=|.||.-
T Consensus 528 ~~~~~~~~~~~ 538 (553)
T PRK15048 528 SRPASEQPPAQ 538 (553)
T ss_pred ccccccCCccC
Confidence 34444444443
No 19
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.60 E-value=11 Score=33.57 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=51.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-hhhhHHHHHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR 194 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrh----LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-~ig~Dv~~v~ 194 (328)
||||..+.+..-..-..+.++-..+....|+ |....+.|...+|.. -..+++|+..++.++. .|..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6888888887777777777777666655554 333333344333333 2345555555444332 1111222444
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020255 195 DIVQTLESKLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (328)
.....+|.||..++.+-+....++..
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555565555555544444433
No 20
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.16 E-value=5.3 Score=35.01 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
.|+.||+-|...||+...--+.+.+.+.++....+.+..-+..+..-...+|.|++.++.+-
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888888888888888888888888888888888888664
No 21
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=89.58 E-value=12 Score=32.26 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
+..-++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777777777777777
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.56 E-value=4.4 Score=33.14 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (328)
..+|.++-+.|.+.|++|+..++.-.+..... .++..++..++.|-..+-+-..+.+.+...+|..|.-....+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766654433 44455556666666666666666667777777766666555555
Q ss_pred HHHHH
Q 020255 221 LCDRA 225 (328)
Q Consensus 221 LC~f~ 225 (328)
..+-+
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 54444
No 23
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=89.46 E-value=3.1 Score=44.09 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=69.8
Q ss_pred cCchhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 115 ~SDlMfV----TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
++++.|+ +||||...++ +.+=.....+-+.=+.+..+|+++...++++.+.-..|.+.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776 8999876554 55556666666777788889999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 020255 191 QSVRDIVQTLESKLI 205 (328)
Q Consensus 191 ~~v~~~V~~Le~Ki~ 205 (328)
+.++.--..+|.|-.
T Consensus 83 ~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 83 SELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888865555555544
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.74 E-value=5.7 Score=45.15 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=79.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
-+..++.-+.+...=+...+++...+.|+-+..+-.+.+++||+.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556667777778888888888888899999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHhhccC
Q 020255 214 TTLGVKKLCDRARELENG 231 (328)
Q Consensus 214 Tn~GV~~LC~f~~~~~~~ 231 (328)
.-.-+++||.-+..++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999888765543
No 25
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.29 E-value=16 Score=31.57 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=9.2
Q ss_pred hhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 180 RGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 180 ~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
...+..|...++.+...+..+...+
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~~~ 158 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISESA 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHhhH
Confidence 3333333333333333333333333
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.16 E-value=8.7 Score=35.80 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.....++..+--+.+...|+.|.++|+.+...++....-.+..++.|...+..+..+..+++++..+-..|..=|.
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677788889999999999999998888888888888888888888888888888766555554333
No 27
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.93 E-value=4.9 Score=31.77 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 020255 187 GDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~i 207 (328)
-+.++.+-+.|..++..+..+
T Consensus 67 ~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 67 LEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544443
No 28
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=86.94 E-value=13 Score=30.43 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh---HHHHHHHHHHHHHHHHHHhhhh
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~---Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
-|...-+..+.|...+++.......-.+..+....+++.-+.+|.. .|..+-.+|..||.=..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666555555555544 6666667777766666666654
No 29
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=86.66 E-value=4.3 Score=43.37 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
......+.+.+.+|+..++.++.+...-+.+++..+.++
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667777777776666666555555555544
No 30
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.41 E-value=13 Score=32.65 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.5
Q ss_pred HHHHHH
Q 020255 220 KLCDRA 225 (328)
Q Consensus 220 ~LC~f~ 225 (328)
+|++.+
T Consensus 176 ~l~~~~ 181 (191)
T PF04156_consen 176 QLEEKI 181 (191)
T ss_pred HHHHHH
Confidence 344443
No 31
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=86.40 E-value=13 Score=31.12 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSI 144 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sL 144 (328)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 32
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=86.28 E-value=10 Score=37.13 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh--------------
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-------------- 188 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~-------------- 188 (328)
-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+..
T Consensus 86 ~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~ 165 (333)
T PF05816_consen 86 LERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGDQ 165 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCH
Confidence 344444568999999999999999999999999999988877777766666554444433333332
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 189 ----EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 189 ----Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
.+..+.+.+..||.|+..++-.+.++..+.--+
T Consensus 166 ~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 166 MDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345667788999999999998888888776544
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.94 E-value=7.9 Score=42.19 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=23.5
Q ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHhHhhhhhhH
Q 020255 130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (328)
Q Consensus 130 vasvtKqLeqVs~s-LaaaKrhLsqRId~vD~kl 162 (328)
++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45666777777777 7777778888887776544
No 34
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.57 E-value=16 Score=38.27 Aligned_cols=121 Identities=13% Similarity=0.265 Sum_probs=74.3
Q ss_pred hheeeEEecCCCcCchhhhhh--------------------hhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 020255 103 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (328)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK--------------------RnMsnAvasvtKqLeqVs~sLa---aaKrhLsqRId~vD 159 (328)
-||-=|-=+|..|.++=.-.+ +.....+..+.+++|++|+.|. .||+...+.+..+.
T Consensus 237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556677888887532222 2344566677788888888876 46777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHHH---------------------HHHHHHHHHHHhh
Q 020255 160 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVRD---------------------IVQTLESKLIEIE 208 (328)
Q Consensus 160 ~klDeq~eis~~i~~eV~~v~~d----------ls~ig~Dv~~v~~---------------------~V~~Le~Ki~~ie 208 (328)
+.++...+-...+..|+..++.. +..+..+++.+.. ....|..++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666665 3344444444333 3344555555666
Q ss_pred hhhhhhhHHHHHHHH
Q 020255 209 GKQDITTLGVKKLCD 223 (328)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (328)
..|.--..-|..|+.
T Consensus 397 ~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 397 KEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555543
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.45 E-value=5.9 Score=38.63 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+.....++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888999999999999988889999998888888888888887776655444443
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.30 E-value=14 Score=37.47 Aligned_cols=53 Identities=6% Similarity=0.149 Sum_probs=25.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
++.+..++.+........++++.........+..++++++..+..++.++.++
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 33334444444444444444454444555555555555555555555555443
No 37
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=85.01 E-value=16 Score=32.71 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
.++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.++.|.+.+..++.+.-..|-++......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677888888888888888888888888888777777654 46677888888888888877777777776666555555
Q ss_pred HHHh
Q 020255 204 LIEI 207 (328)
Q Consensus 204 i~~i 207 (328)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5444
No 38
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=84.67 E-value=4.2 Score=37.94 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.|
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666665555555555444555566677777777777777777754
No 39
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=83.79 E-value=4.5 Score=32.71 Aligned_cols=53 Identities=8% Similarity=0.236 Sum_probs=26.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
++++.|..+.+.++..+...+..+ .+++.+..|||.+.+-...+.+.|++++.
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444433 34444555555555555555555544443
No 40
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=83.44 E-value=11 Score=30.39 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHH----HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQ----ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~----~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
+-++.+++.+|++.=-..|.++.+.++ .++.+...=...+..+..|++.++.-++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777766654 345555566667778889999999999999888864
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.32 E-value=14 Score=34.46 Aligned_cols=70 Identities=10% Similarity=0.247 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
.+.+-++.+..+|++.......-+.++.++++..+....+.++--++.++++..++.++....-+.+.++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666666666665555444444444333
No 42
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=83.28 E-value=2.7 Score=34.92 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=46.1
Q ss_pred HHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020255 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (328)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~ 178 (328)
++.-+|.||+=.+- +..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55578999987764 47899999999999999999999999999999888
Q ss_pred hhhchh
Q 020255 179 LRGRSK 184 (328)
Q Consensus 179 v~~dls 184 (328)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 776543
No 43
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.10 E-value=12 Score=38.66 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (328)
++|+|....|++.. ++|...+++..+...-.+..++++..+..-+.++..|++.+++.+..++..|..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 88888888887654 45566677777777777888888888888888999999999999999999998888766 66
Q ss_pred hHHHHHH
Q 020255 215 TLGVKKL 221 (328)
Q Consensus 215 n~GV~~L 221 (328)
..++...
T Consensus 113 qr~~La~ 119 (420)
T COG4942 113 QRRRLAE 119 (420)
T ss_pred HHHHHHH
Confidence 6665544
No 44
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=82.79 E-value=5.2 Score=40.12 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhcc
Q 020255 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (328)
++.++..+..|-.||.+|..+=..|-.=|..+|.=++.+++
T Consensus 59 l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~ 99 (383)
T PF04100_consen 59 LEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN 99 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444444555544444443
No 45
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=82.73 E-value=34 Score=34.78 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
.+.++.+...=.+++.-.+.+....+++.+..+++...+.++...+.++-...+.+...+
T Consensus 269 ~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~ 328 (553)
T PRK15048 269 REGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLA 328 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555556666666666666666666665555555555555544444444433
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.29 E-value=16 Score=36.73 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHhHhhh-------hhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQ-------RQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaK-------rhLsqRId~v-------D~klDeq~eis~~i~~eV~~v~~dls~i 186 (328)
-=+.+++++...+..||+.+++.+..+- |||.++++.+ -++|.+..+--++...-|++....|.+|
T Consensus 227 ~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 227 QHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444455555555555554444444 4444444433 2333333344444444455555556666
Q ss_pred hhHHHHHHHHH
Q 020255 187 GDEFQSVRDIV 197 (328)
Q Consensus 187 g~Dv~~v~~~V 197 (328)
.++++.+++-+
T Consensus 307 seeLe~vK~em 317 (359)
T PF10498_consen 307 SEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHH
Confidence 66666655433
No 47
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=82.26 E-value=34 Score=30.01 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+-..+++..+....+.+.+..+...+.+....++.....+..+..++..+.
T Consensus 37 i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 87 (262)
T smart00283 37 VAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELE 87 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333
No 48
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.12 E-value=25 Score=36.85 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhc
Q 020255 58 FNDLLAEVSSVQQELSH 74 (328)
Q Consensus 58 ~~dL~aQV~~LaqElr~ 74 (328)
|.++..+|..|+++|.+
T Consensus 251 ~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 43488888888888887
No 49
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.04 E-value=26 Score=32.12 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
.....++..|++.+..+++++++-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888888877777777665
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.04 E-value=22 Score=33.11 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=50.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (328)
-.||+.|..++.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777778888888888888888888888888888888765544444443
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.95 E-value=9.5 Score=31.80 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=48.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i--g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
..+++.+++++++ ..+-++.+..++.+. .+|+..++-.+..++++++.+++.=+--++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 456677777777887 8888888888888999999998887766777777754
No 52
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=81.76 E-value=9.6 Score=30.35 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=39.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
|+-+++-+.+...-++..+......-...++.+..++++.=.+||=. +++|....+ .-+...+.-+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~-------~~L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQK-------AVLARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHH-------HHHHHHHHHHH
Confidence 44444555555555555555554445555555555555554444422 122222222 22444555556
Q ss_pred HHHHHHHHhhh
Q 020255 199 TLESKLIEIEG 209 (328)
Q Consensus 199 ~Le~Ki~~ie~ 209 (328)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666664
No 53
>PRK09039 hypothetical protein; Validated
Probab=81.18 E-value=20 Score=35.48 Aligned_cols=87 Identities=9% Similarity=0.234 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH-------HHHHHHHHHHhhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-------VQTLESKLIEIEG 209 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~-------V~~Le~Ki~~ie~ 209 (328)
|+..++....+..++..|+..+.++|++.+..+....-+|..++..++.+..-+..++.. -.....||+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445577888888888888888887766666555555555444444444444 4444455555554
Q ss_pred hhhhhhHH-HHHHHH
Q 020255 210 KQDITTLG-VKKLCD 223 (328)
Q Consensus 210 kQd~Tn~G-V~~LC~ 223 (328)
.=+.+.+. +..|-+
T Consensus 180 ~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 180 RLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444333 444433
No 54
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=81.10 E-value=7.4 Score=35.46 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
..-..-|..+.+.|+.++++..+.-+...|+|--. .|=+=..+|+.+...+..||.+|..+|.
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777777788888888888888888443 4467788999999999999999999664
No 55
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.05 E-value=27 Score=36.34 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH-----hhhchhhh
Q 020255 124 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 186 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~s------------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~-----v~~dls~i 186 (328)
+.+..-++++-.++.+|.++ +.+.|++|+..-|+|=.|.|+.+.+.+.+|++|.. ....++.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555566666667777654 55679999999999999999999999999999753 22345556
Q ss_pred hhHHHHHHHHHH---------------HHHHHHHHhhhhhhhhhHHHH
Q 020255 187 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLGVK 219 (328)
Q Consensus 187 g~Dv~~v~~~V~---------------~Le~Ki~~ie~kQd~Tn~GV~ 219 (328)
+.|++....-+. .||.-|+.|..-|+|=|.==.
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554444 466778888888887665433
No 56
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=79.91 E-value=7.9 Score=31.30 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=10.7
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHH
Q 020255 146 AAQRQLSSKITSVDRDVNKIVEI 168 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~ei 168 (328)
.++++|..-|+.+.+.|++..+.
T Consensus 39 ~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 39 WLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444444444444333
No 57
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.81 E-value=7.7 Score=34.99 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=46.2
Q ss_pred CcCchhhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 114 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 114 s~SDlMfVTKRnMsn---AvasvtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766664 4667778888888887777766654 5666666666666666777788888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 020255 188 DEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 58
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=79.76 E-value=15 Score=26.74 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=27.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
.|+.+..++.+.+++...|.++|.+=..-|.+|..+++....-+..=-.+|
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666665555555555555554444443333333
No 59
>PRK04406 hypothetical protein; Provisional
Probab=79.69 E-value=8.8 Score=30.58 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=34.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
.+...+.+||+.|..++--|....+...+.|++-+..+......+.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999888888888777766444443333
No 60
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=79.63 E-value=21 Score=28.25 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAA 147 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaa 147 (328)
++.+-+++......+.+.++++.+.+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555555554444444333
No 61
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.22 E-value=8.2 Score=29.88 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=36.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
+..||+.|..|+--+.+..+...+.|+.-+.. |+.++..+..|..||..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 56889999999888888888888888776665 66666666667777777763
No 62
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=78.22 E-value=26 Score=31.63 Aligned_cols=88 Identities=10% Similarity=0.198 Sum_probs=51.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh----hchhhhhhHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR----GRSKLIGDEFQSVRDI 196 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sL-aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~----~dls~ig~Dv~~v~~~ 196 (328)
|-.++-+-++.....-+.+.+.+ ..+|..|...|..|-+.+.+..+-.+.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555554444444444444 356888889998887776666655555555554433 4555666666666666
Q ss_pred HHHHHHHHHHhhh
Q 020255 197 VQTLESKLIEIEG 209 (328)
Q Consensus 197 V~~Le~Ki~~ie~ 209 (328)
+.+-.+.|..++.
T Consensus 158 l~~~~g~I~~L~~ 170 (184)
T PF05791_consen 158 LAGENGDIPQLQK 170 (184)
T ss_dssp HHHTT--HHHHHH
T ss_pred HhcccCCHHHHHH
Confidence 6666666665554
No 63
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=78.16 E-value=32 Score=32.59 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=68.6
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH---HH
Q 020255 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITS-------VDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQ 191 (328)
Q Consensus 124 RnMsnAvasvt--KqLeqVs~sLaaaKrhLsqRId~-------vD~klDeq~eis~~i~~eV~~v~~dls~ig~D---v~ 191 (328)
|.|-+|...++ +.|++..+.|-.|+..|.-=|+- +=+-+|.+..++..+.++...++....++-.. .+
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 77888888888888877644432 22334444445555555555555543332221 34
Q ss_pred HHHHHHHHHHHHHHHhh-----------------hhhhhhhHHHHHHHHHHHhhccCCCccce
Q 020255 192 SVRDIVQTLESKLIEIE-----------------GKQDITTLGVKKLCDRARELENGRPTELV 237 (328)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie-----------------~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~ 237 (328)
.++.++......|..+. .=||.|-+=|....+.++.+|..-..-++
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~ 168 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444333 33888999888888888877766554444
No 64
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=77.92 E-value=48 Score=29.09 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
++++-++.++....++-+.++..=.+....++.....+++..+....+.+.+.++..-+..+..-++.+...+
T Consensus 137 ~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~ 209 (262)
T smart00283 137 KLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAAT 209 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444444444444443333333333
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.90 E-value=48 Score=29.10 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=53.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+++..=-|+|++=...+..-=+.|+.|++.+...+|...+-....++.+.+.... ....++++.-|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455556666666666666666677777777777766666555555554433222 223446666677777766666
Q ss_pred hhhhhhhhHHHHHH
Q 020255 208 EGKQDITTLGVKKL 221 (328)
Q Consensus 208 e~kQd~Tn~GV~~L 221 (328)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544433
No 66
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.73 E-value=5.8 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
.++|..||+.++..+++..+....++++...++..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777777666655443
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.52 E-value=37 Score=33.10 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.5
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHH
Q 020255 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVN 163 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvtKqLeqVs~sLaaa---KrhLsqRId~vD~klD 163 (328)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666667777766666554443 4445555555554433
No 68
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=77.51 E-value=6.5 Score=39.17 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
+.++.|..+-++||.|+.=.-+--..|..|++.|..+.|+ -..-.--+++..+++.++..|+.|+..+-.-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999985 2222233445677777777777777666543
No 69
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=77.36 E-value=22 Score=30.29 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHhHhhhhhhHH-HHHHHHHHHHHHHHHhhhchh-hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 147 AQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRGRSK-LIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 147 aKrhLsqRId~vD~klD-eq~eis~~i~~eV~~v~~dls-~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
.+.++..+++.+-++-+ ...++.+.+.+.|..+-.++. --..||+.++.-|..||.+|..++.
T Consensus 53 ~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 53 AREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444433332 234666777777776655543 2348999999999999999988764
No 70
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.20 E-value=6.1 Score=32.96 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
+..|++.+..||+.+...+++..+....++++++.+...+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888888888888877777665543
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.17 E-value=6.8 Score=37.60 Aligned_cols=55 Identities=9% Similarity=0.242 Sum_probs=32.3
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+|+.+|.+++-.....+.+++++..++..++.+..++..++..+..|+..+..++
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e 65 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE 65 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666555555555555555444
No 72
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.07 E-value=31 Score=31.72 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=50.6
Q ss_pred ecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhh-hchhhh
Q 020255 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLI 186 (328)
Q Consensus 110 WKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLa-aaKrhLsqRId~vD~klDeq~eis~~i~~e-V~~v~-~dls~i 186 (328)
||+| +.+| .+|++-+|++++.+.-.- -.+.-++.-++.+...+.+...-...+-.+ |..++ .+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 3444 468889999998775443 334556666777766666665555555444 55552 233334
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 020255 187 GDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~i 207 (328)
++-+.....-+..|..||..+
T Consensus 84 ~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555433
No 73
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=76.87 E-value=1.4 Score=43.98 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
|+.+|+++..++..++..|.+ |+.+|+++...+++++.-...+..+|..++..+..+-.+|..
T Consensus 40 LEssv~sL~~SVs~lss~iSd----Lss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~ 102 (326)
T PF04582_consen 40 LESSVASLSDSVSSLSSTISD----LSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS 102 (326)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 344444444444444443332 344444444444444444444444444444433333333333
No 74
>PRK14011 prefoldin subunit alpha; Provisional
Probab=76.79 E-value=5.6 Score=35.23 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
.+..|+++|..||+.|++.+++..+..+.+.+++.+++..
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999988888888776654
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.71 E-value=24 Score=30.48 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
.+|..+++-+-.+++..|.+.+.. ..-.+|...++.+..+.+..-++-+.-.++|.+++.|+..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~-~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALK-KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 478888888888888888885544 4445899999999999999999999999999888887443
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.61 E-value=29 Score=37.17 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=38.9
Q ss_pred cCchhhhhhhh--HHHHHHHHHHh---HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 020255 115 LPDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 115 ~SDlMfVTKRn--MsnAvasvtKq---LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 189 (328)
-+||+.||-|. |.+-+..+-|. |.+.-..|......|..+++.+...|....+-....+.+..++......+..+
T Consensus 128 ~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E 207 (546)
T PF07888_consen 128 NSDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEE 207 (546)
T ss_pred CcceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888665 33333333333 33334445555555666666666666555544444444433333333333333
Q ss_pred HHH
Q 020255 190 FQS 192 (328)
Q Consensus 190 v~~ 192 (328)
.+.
T Consensus 208 ~~~ 210 (546)
T PF07888_consen 208 RES 210 (546)
T ss_pred HHH
Confidence 333
No 77
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.44 E-value=34 Score=32.07 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+....+.++++|......+..+| .+++.++..++....=.+..+++++.+..+...+..+.+..+.-...|+.+|.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666665555555443 34455555555555555555666666666666666666666666666666665
Q ss_pred Hhhhh
Q 020255 206 EIEGK 210 (328)
Q Consensus 206 ~ie~k 210 (328)
.+..+
T Consensus 98 ~l~~~ 102 (264)
T PF06008_consen 98 NLQDN 102 (264)
T ss_pred HHHHH
Confidence 55444
No 78
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.43 E-value=35 Score=36.00 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 161 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
+|.++++-.+++++++..+|.+++.+....+..++.++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444333334444444445555555554443
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.42 E-value=37 Score=35.29 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=69.9
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLs-------qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
-++-+-++....-++|..|...|++.|++|. .+.+.++..+.|.+..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677788888888999999999999998887 567778888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 020255 195 DIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd 212 (328)
+.+..+|.-+.+..++-.
T Consensus 238 ~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 238 NEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766655444433
No 80
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=76.35 E-value=21 Score=31.33 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 187 GDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
..||+.++.-|..|+.+|..+..++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789999988888888888887653
No 81
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=76.21 E-value=13 Score=30.15 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 020255 186 IGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+..-++.+-..+..|+.|+..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.83 E-value=48 Score=39.27 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh---------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSK---------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqR---------Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
+-.+.+.++++.+......+++++... +......+++..+-.+...+++.+.+..+..+..+++.+..-+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766532 22223333333333333333444444444444444444444444
Q ss_pred HHHHHHHHhh
Q 020255 199 TLESKLIEIE 208 (328)
Q Consensus 199 ~Le~Ki~~ie 208 (328)
.|..++...+
T Consensus 394 eLqeqLaelq 403 (1486)
T PRK04863 394 ELKSQLADYQ 403 (1486)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 83
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.54 E-value=60 Score=36.97 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 183 SKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 183 ls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+..+..++...+.....|+..|..++.+
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 899 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELESE 899 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333343444333333
No 84
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=75.42 E-value=7.3 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
+..|++.|..||+.+.+++++..+-.+.+++++..+...++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777776666666666655555443
No 85
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.15 E-value=59 Score=37.03 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020255 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (328)
..++++..+..++.....+...+..-+..++.++..++..-...
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444333333
No 86
>PRK00846 hypothetical protein; Provisional
Probab=75.03 E-value=20 Score=29.02 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
...+.+||+.|..++--|...++...+.|+.-+.. ++.++..+.-|-.|+..++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999999999888888888776655 55555555555567666653
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.87 E-value=74 Score=31.07 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHhhcc
Q 020255 214 TTLGVKKLCDRARELEN 230 (328)
Q Consensus 214 Tn~GV~~LC~f~~~~~~ 230 (328)
|..=|..|++-+..+++
T Consensus 274 t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEK 290 (325)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33335555444443333
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.84 E-value=18 Score=36.44 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.3
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs 141 (328)
+...+-.||.-|..--+.+++.||.+.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888777777777776554
No 89
>PRK09793 methyl-accepting protein IV; Provisional
Probab=74.77 E-value=83 Score=32.21 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=13.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 183 (328)
++..-++.+....+++.+-.+++.+.+.++...+
T Consensus 279 eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~ 312 (533)
T PRK09793 279 EIVAGNNDLSSRTEQQAASLAQTAASMEQLTATV 312 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444433333333333333333
No 90
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.58 E-value=1.5e+02 Score=33.00 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=59.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
.+-+..+-..+....+.-...|..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444555556666677777777777777777665555554444 44444566666666666666665
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCccc
Q 020255 207 IEGKQDITTLGVKKLCDRARELENGRPTEL 236 (328)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~ 236 (328)
-..-=..--..+.-|+.++ ++-|+-.|+.
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence 5554444445566666555 5555555544
No 91
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.38 E-value=31 Score=37.78 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
|+.|+.+=+++.+|+++..+-++.+.+-+..+
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 92
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.31 E-value=32 Score=34.81 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=71.8
Q ss_pred cCCCc-CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 020255 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 111 KGws~-SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 189 (328)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+=..+..|=..+...|.-...--+...++..++|..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788899999999999999999999999888888888877777777666666666666666666666666555
Q ss_pred HHH----HHHHHHHHHHHHHHhhhh
Q 020255 190 FQS----VRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 190 v~~----v~~~V~~Le~Ki~~ie~k 210 (328)
|.+ +..++..+|-+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 444555555555555543
No 93
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=73.58 E-value=14 Score=28.49 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=22.5
Q ss_pred hhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 020255 101 VAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA 146 (328)
Q Consensus 101 GavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaa 146 (328)
+++||.|-==+|- -||+.+.+.+..+..++++.++.+..
T Consensus 13 a~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 13 AAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444 36777777777777666665555444
No 94
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=73.43 E-value=14 Score=32.84 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH-HhhhchhhhhhHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-ILRGRSKLIGDEFQS 192 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~-~v~~dls~ig~Dv~~ 192 (328)
+.|.+++..+-+.|..-|+....++.+-.++++.=-+.|. -+++|++.+...++.
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555655555555555544444433333332 356677777666655
No 95
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.96 E-value=36 Score=26.75 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.|.+.+.-|..|+|.++.|+.......+.+..|=..+-.-+..-..++..++.-+..|...+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999999988888766666677777778888877777777766543
No 96
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=72.53 E-value=14 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
|.+-.||++|. +|-++|+..|++=-.++++ -|+|+..++++|.-
T Consensus 7 r~~ieRiErLE---eEk~~i~~dikdVyaEAK~----~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLE---EEKKAISDDIKDVYAEAKG----NGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34445555554 4555666666655555554 69999999999864
No 97
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.43 E-value=56 Score=32.49 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=25.4
Q ss_pred hhHHHHHH---HHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 124 RSLSDACN---SVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 124 RnMsnAva---svtKqLeqVs~sLaaa-KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
.++..|-. ..+..||+|.+.+... --.|...|..+...|++|+...+..+++|..++..
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544433 2345555555444332 22344444444444444444444444444443333
No 98
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.19 E-value=31 Score=35.71 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH------------hhhchhhhhhHHHHHHHHHH--------HH
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI------------LRGRSKLIGDEFQSVRDIVQ--------TL 200 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~------------v~~dls~ig~Dv~~v~~~V~--------~L 200 (328)
..-+..-|++|..+-++|-.++|+.+.+.+.+++||.. +..|++....|++.++.-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34566778888888888888888888888888887643 34444444444444444432 45
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 201 ESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
|.-|+.|..-|+|=+.=-..+-+.-+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778887777555444433
No 99
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.10 E-value=23 Score=29.41 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
|.+..||++|. +|-+.|...|++ +=.+.+--|+|++.++.++.-
T Consensus 17 rafIerIERlE---eEk~~i~~dikd----vy~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 17 RAFIERIERLE---EEKKTIADDIKD----VYAEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHcCCccHHHHHHHHHH
Confidence 34445555554 445555555554 445555579999999988753
No 100
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.71 E-value=19 Score=29.14 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
...+|.+..+++.+-.+ .++++++|..--.. ..+.+.+..++..+..-+..||.++..++.
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444 34444444332211 134444444445555444444444444443
No 101
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=71.55 E-value=73 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 183 ls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
...+...++..++.+...-.||...+.+..
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~~ 169 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQSS 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555555555555555556666655443
No 102
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=71.39 E-value=44 Score=37.00 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=31.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccC
Q 020255 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (328)
Q Consensus 183 ls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (328)
+.+-..++..+.+.+..+..++.++....+-...+...|-+|...+.+.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 602 VASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566666777777777777766555556666666666655543
No 103
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=71.19 E-value=26 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
...++++.+.|+++...-...|+ ..|..+...||+..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667777777777754444444 456667789999999999999998766
No 104
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.03 E-value=10 Score=32.18 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
..|++.|..||+.++..+++..+....+++++..++..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555555555444443
No 105
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.91 E-value=50 Score=37.80 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=67.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+. .+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---ELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888888888888888888887777777776666554 3455666667777777788888876
Q ss_pred h-hhhhhHHHHHHHHHHH
Q 020255 210 K-QDITTLGVKKLCDRAR 226 (328)
Q Consensus 210 k-Qd~Tn~GV~~LC~f~~ 226 (328)
+ ..|-..+|..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 5 5666777777765444
No 106
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=70.37 E-value=50 Score=34.32 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=53.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
..++..+-.++.+|.++-+.+++-...-+.||+.+..||.++|+--..|..|+..-......
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~ 74 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEK 74 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36788899999999999999999999999999999999999999988888888755544443
No 107
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=70.20 E-value=1.1e+02 Score=31.54 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhH
Q 020255 126 LSDACNSVARQL 137 (328)
Q Consensus 126 MsnAvasvtKqL 137 (328)
|.++++.+-..|
T Consensus 252 La~s~n~m~~~L 263 (554)
T PRK15041 252 LAESLRHMQGEL 263 (554)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 108
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=69.73 E-value=83 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.335 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------HHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------EISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~--------eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
+++..+.+-.|.-++...|+..+.-+..|+..++.++.... +......+.+..++ +.++.|+..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45556666556666666666666555555555555544411 23333444443333 34445566666666
Q ss_pred HHHHHHHHHhh
Q 020255 198 QTLESKLIEIE 208 (328)
Q Consensus 198 ~~Le~Ki~~ie 208 (328)
..|-..+--|.
T Consensus 95 ~nL~ssvTNin 105 (140)
T PF04513_consen 95 NNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHhhHH
Confidence 66555555544
No 109
>PRK10698 phage shock protein PspA; Provisional
Probab=69.23 E-value=48 Score=30.96 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=49.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH---------HHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT---------QEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i---------~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
|+.-...|+.-++....+-..|...+..|..|+.+.+.=...+ +.+|.++-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 5555556666666666666667777777777777665433222 222322222 24455566677889
Q ss_pred HHHHHHhhhhhhhh
Q 020255 201 ESKLIEIEGKQDIT 214 (328)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (328)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999887654
No 110
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.89 E-value=83 Score=28.40 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHH--HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020255 137 LEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (328)
Q Consensus 137 LeqVs~sLaaaKrh--LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (328)
=+++++.|....+| +.+||+.|....+...+-++.|..++.+++.+|..+- ..=+.|+..+...+...
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~~~ 80 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEKRP 80 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhccccccccccCC
Confidence 34444444444444 4566666666666666666666666666655544433 22223334443333222
Q ss_pred hHHHHHHHHHHHhhccCCCc
Q 020255 215 TLGVKKLCDRARELENGRPT 234 (328)
Q Consensus 215 n~GV~~LC~f~~~~~~~~~~ 234 (328)
- -+..|..|++++.....+
T Consensus 81 v-~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 81 V-DYEELLSYAHRISKFTSA 99 (188)
T ss_pred C-CHHHHHHHHHHHHHhcCC
Confidence 2 277888899886544433
No 111
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=68.80 E-value=93 Score=29.09 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 020255 61 LLAEVSSV 68 (328)
Q Consensus 61 L~aQV~~L 68 (328)
|++++..+
T Consensus 135 ll~~~~~l 142 (291)
T TIGR00996 135 LLGSLTRL 142 (291)
T ss_pred HHHHHHHH
Confidence 44444443
No 112
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.46 E-value=42 Score=40.86 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.++.-+-..+.+..+.+..+||.+.+|++.....++....-.....+--..++.+++....|++.++..+..||.|+...
T Consensus 1361 ~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f 1440 (1930)
T KOG0161|consen 1361 QWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRF 1440 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556888899999999999999999998888888888888889999999999999999999999998866
Q ss_pred h
Q 020255 208 E 208 (328)
Q Consensus 208 e 208 (328)
+
T Consensus 1441 ~ 1441 (1930)
T KOG0161|consen 1441 E 1441 (1930)
T ss_pred H
Confidence 5
No 113
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.45 E-value=48 Score=33.49 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~ 170 (328)
.++.-.+.+.+.+..+.++|+.++.++.......+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444444
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.88 E-value=67 Score=33.82 Aligned_cols=121 Identities=15% Similarity=0.288 Sum_probs=75.9
Q ss_pred hheeeEEecCCCcCchhhhhh-hh-------------------HHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 020255 103 VGYGYVWWKGWKLPDMMFATR-RS-------------------LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (328)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK-Rn-------------------MsnAvasvtKqLeqVs~sLa---aaKrhLsqRId~vD 159 (328)
-||-.|-=+|..|+++=+-.+ .. .......+...+|++|+.+. .||+...+..+.+.
T Consensus 233 ~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~ 312 (560)
T PF06160_consen 233 EGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELY 312 (560)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 489999999999998543322 11 12234455666677777765 47788888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH-------------------------------HHHHHHHHHHHHHHhh
Q 020255 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQS-------------------------------VRDIVQTLESKLIEIE 208 (328)
Q Consensus 160 ~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~-------------------------------v~~~V~~Le~Ki~~ie 208 (328)
+.++...+-.+.+..|+..++..-.--..|++. +...+..+...|..|+
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 888887777777777766555432211122221 2223445555666777
Q ss_pred hhhhhhhHHHHHHHH
Q 020255 209 GKQDITTLGVKKLCD 223 (328)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (328)
..|.--+..+..||.
T Consensus 393 ~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 393 EEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777877774
No 115
>PRK02119 hypothetical protein; Provisional
Probab=67.82 E-value=23 Score=27.98 Aligned_cols=51 Identities=8% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.+..||+.|..|+--|........+.|++-+..+ +.++.-+..|-.++..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 4778999998888888888888888887766654 44444444444444443
No 116
>PRK02224 chromosome segregation protein; Provisional
Probab=67.67 E-value=51 Score=35.60 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=14.8
Q ss_pred hHHHHHHHHHH-------HHHHHHHhHhhhhhhHHH
Q 020255 136 QLEDVYSSISA-------AQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 136 qLeqVs~sLaa-------aKrhLsqRId~vD~klDe 164 (328)
.++++++.+.. .++.+..+++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 455555555555555544
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.66 E-value=25 Score=36.88 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
..+|+.|..-=+++..+++.++.++.+..+....++++-..+|..+.++..++..+++.|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888888888888888888888888888888888887776653
No 118
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.56 E-value=34 Score=41.26 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhh
Q 020255 135 RQLEDVYSSISAAQRQLSSKITS 157 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~ 157 (328)
.+++++...|+.+|+||....++
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 119
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.26 E-value=23 Score=30.37 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=31.3
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+|..|+++..+. .++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 16 ~~r~~~~~~~~q--------~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 16 IGRLTSSNQQKQ--------AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554332 344455556666666666677777777777766666554
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.83 E-value=74 Score=34.91 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=51.8
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQ-LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 126 MsnAvasvtKq-LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
+..|+..+-.+ ++ -...|+.++..|+..+-...++|.+-...++++...++..-+.+.+-++.+.+.=+.|..|+
T Consensus 541 L~~a~~vlreeYi~----~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYIE----KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655543 22 34578999999999999998888888888877776666655555555555555555555555
Q ss_pred HH
Q 020255 205 IE 206 (328)
Q Consensus 205 ~~ 206 (328)
+.
T Consensus 617 ~~ 618 (717)
T PF10168_consen 617 DR 618 (717)
T ss_pred HH
Confidence 53
No 121
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=66.79 E-value=13 Score=32.84 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.0
Q ss_pred HHHhhhheeeEEecC
Q 020255 98 VVIVAVGYGYVWWKG 112 (328)
Q Consensus 98 a~iGavGYgYmwWKG 112 (328)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445557777875
No 122
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.67 E-value=22 Score=27.98 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.+.+||..|..++--|....+...+.|++-+..+ +.++.-+..|-.|+..++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4778999999999888888888888887776654 444444444545665544
No 123
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.67 E-value=84 Score=33.37 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=15.1
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
++++.+++.++..+..+++.++.-+..++.++.++
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 124
>PRK02224 chromosome segregation protein; Provisional
Probab=66.54 E-value=1.4e+02 Score=32.35 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.6
Q ss_pred eeeeEc
Q 020255 8 LTFLVG 13 (328)
Q Consensus 8 v~ILvG 13 (328)
+++|+|
T Consensus 25 ~~~i~G 30 (880)
T PRK02224 25 VTVIHG 30 (880)
T ss_pred eEEEEC
Confidence 444444
No 125
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.28 E-value=93 Score=30.42 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
.++|++.-+.|.+++.....++..|...+++..+-.+.+++||.-++-=- .-.+-+.+++ +..|...|..+-..|.-
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vq--Ia~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQ--IANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHH--HHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777775544311 1222222222 33444444444444444
Q ss_pred hhHHHHHHHH
Q 020255 214 TTLGVKKLCD 223 (328)
Q Consensus 214 Tn~GV~~LC~ 223 (328)
-..-+..+|+
T Consensus 139 Eldel~e~~~ 148 (258)
T PF15397_consen 139 ELDELNEMRQ 148 (258)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 126
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.04 E-value=59 Score=37.45 Aligned_cols=63 Identities=11% Similarity=0.278 Sum_probs=39.7
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHH-HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV-~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.+|.-.+|+..-+..|.+......++++. ..+..+++++..+++.+..-|..||.-+.++..+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e 423 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777777666666666 5566666666666666666666666555555433
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.95 E-value=1.2e+02 Score=29.90 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHH----HHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaa---KrhLsqRId~vD~klDeq----~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
.-.|.+--+.+.++++.+.+.+... +..|...+..+..-.+++ .+.-+.+++++.+...+++....++..++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666655544333 333444444443333332 112233334444444444444444444444
Q ss_pred HHHHHHHHHHHhhh------------------hhhhhhHHHHHHHHHHHhhc
Q 020255 196 IVQTLESKLIEIEG------------------KQDITTLGVKKLCDRARELE 229 (328)
Q Consensus 196 ~V~~Le~Ki~~ie~------------------kQd~Tn~GV~~LC~f~~~~~ 229 (328)
-+..++.+|..... ...+|..=|..|++-+..++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 44444444443332 35566666666665444433
No 128
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.60 E-value=17 Score=29.76 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|+.|.+.|..+++++
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556655555555
No 129
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=65.60 E-value=98 Score=29.32 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=62.2
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
++|=..-.++.+ .+..++.|..+.++..+++ +-++.++.+...|+..+.+-+.--++.+.--....+|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6677788888999888888 67888999999998888776555554444444555667777777777
Q ss_pred HHHHHHHHHHh
Q 020255 197 VQTLESKLIEI 207 (328)
Q Consensus 197 V~~Le~Ki~~i 207 (328)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 130
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.51 E-value=1.1e+02 Score=35.41 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
-..-|.++......+...+++.-+.+...+.++.-==..++....+..++...-+.+...++..+..+..+++.+..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777777776666554433444444444444455555555555555555555555555443
No 131
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=65.47 E-value=60 Score=34.25 Aligned_cols=122 Identities=19% Similarity=0.256 Sum_probs=80.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh--
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE-- 227 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~-- 227 (328)
.++|-|++|..+-+-..|--+.-+.|-.++.+--++...-...|-+.|+.-|-|-..+.-+-..--+-+.||-+.++.
T Consensus 136 ~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~ 215 (558)
T PF15358_consen 136 RVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDET 215 (558)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccC
Confidence 456777777777777777777777888888888888888889999999999988888887777788889999877653
Q ss_pred --hccCCCccceeccccccccccccCCCCCCCCcccCCCCCCCCCCCCC
Q 020255 228 --LENGRPTELVQASRYTLSRTTLELPGITPSSRQSGSLHPLPLEPPSP 274 (328)
Q Consensus 228 --~~~~~~~~~~Q~~~s~s~~pale~~~~~p~sr~~slpp~~~~e~~sp 274 (328)
.....++++-|-.-++-++.. +++.++++.+. =||.+|.+|+-|
T Consensus 216 prrqe~e~qELeqkleagls~~~--l~p~~~~~g~~-~p~~s~~~p~~~ 261 (558)
T PF15358_consen 216 PRRQEAEWQELEQKLEAGLSRSG--LPPTADSTGCP-GPPGSPEEPPRP 261 (558)
T ss_pred cchhhhhHHHHHHHHhhhhhhcC--CCccccCCCCC-CCCCCCCCCCCc
Confidence 122234444454444322222 23444444444 344455555444
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.26 E-value=1.3e+02 Score=28.83 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776655
No 133
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.11 E-value=20 Score=29.62 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI---VEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 132 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq---~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
+|++++|.+.+.|+..++ |++.|+.+|... .|--+.+.+|.+.+...++.-..++..+|
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 588999999999988876 567788877542 22333444555555555555444444444
No 134
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=65.11 E-value=70 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
.+|-++|..+++.|.+-+++-...++...+-++.+++-- .....+++-++.=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~----~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTN----DEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999888877776666655544322 223335555555565555554
No 135
>PRK00295 hypothetical protein; Provisional
Probab=65.06 E-value=29 Score=27.00 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=33.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+..||+.|..|+--|....+...+.|+.-+..+. .++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~-------~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIE-------RLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 5578888888888888888888888877666544 4444444444555443
No 136
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=64.88 E-value=22 Score=29.61 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=12.3
Q ss_pred HHHHhhhheeeEEecCCCcC
Q 020255 97 IVVIVAVGYGYVWWKGWKLP 116 (328)
Q Consensus 97 ~a~iGavGYgYmwWKGws~S 116 (328)
++++.+.-+||+||-.+.++
T Consensus 9 l~~lvl~L~~~l~~qs~~i~ 28 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQRID 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556778888766443
No 137
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.48 E-value=74 Score=26.02 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=44.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
++.+..|+.+..+.+...+=||.+++++=.....++++.++..+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777766666655554444444443
No 138
>PRK13694 hypothetical protein; Provisional
Probab=64.44 E-value=35 Score=28.28 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
|.+-.||++|+ +|-++|+..|++--.++++ -|+|++.++++|.-
T Consensus 15 r~fIERIERLE---eEkk~i~~dikdVyaEAK~----~GfD~K~~r~ii~l 58 (83)
T PRK13694 15 RAFIERIERLE---EEKKTISDDIKDVYAEAKG----NGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHH
Confidence 33444555555 4567777777777777666 59999999998853
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.33 E-value=27 Score=33.23 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 169 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
....+.||.++|+.+++...+++.+++--..|=..|++
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666554444444444
No 140
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=64.26 E-value=45 Score=26.85 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
--+||.+-..-|-+-|.|+.+...-.-.++..|||.+...+|+...
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEK 55 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEK 55 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3579999999999999999999999999999999999998887643
No 141
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.26 E-value=1.4e+02 Score=28.56 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 160 ~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
.-|.|...-......|=...-+.|-+|..|+..+..++...+.--...+.+=...-..+.-|=+++.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444555556666666666666655555444444443333333444444443
No 142
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.23 E-value=1.3e+02 Score=31.59 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 168 is~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777788888888888777777655433
No 143
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=63.93 E-value=8.6 Score=32.52 Aligned_cols=48 Identities=6% Similarity=0.268 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i 172 (328)
++.+++..+..-|.++.+.+.+++..+..+.+.+.+++++-+++....
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999888877765543
No 144
>PRK03918 chromosome segregation protein; Provisional
Probab=63.82 E-value=52 Score=35.38 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHHHHHHHHH
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~---~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++..+++.+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999998888888766655544322 333344444444444333333333
No 145
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=63.79 E-value=87 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhH
Q 020255 150 QLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 150 hLsqRId~vD~klDeq~-eis~~i~~eV~~v~~dls~ig~D 189 (328)
.|..+++.+..+++... ++...+++.+..+...+....++
T Consensus 86 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (202)
T PF01442_consen 86 SLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEE 126 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444433 24444444455555444444333
No 146
>PRK09110 flagellar motor protein MotA; Validated
Probab=63.60 E-value=52 Score=32.10 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=70.8
Q ss_pred hHHHHHHhhhheeeEEecC-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 020255 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (328)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR---Id~vD~klDeq 165 (328)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++--+..+-.++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4667788899999998666 77888888876544 44557778899999999999988744 66777888888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 020255 166 VEISQATQEE-VTILRGRSKLIGD 188 (328)
Q Consensus 166 ~eis~~i~~e-V~~v~~dls~ig~ 188 (328)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8888888887 5566666666653
No 147
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.33 E-value=39 Score=33.63 Aligned_cols=55 Identities=9% Similarity=0.297 Sum_probs=28.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
++.++|.++|..+.++....+.-++-++.+... +..-++.|+.-|..||.||..+
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 444555555555554444444444444444443 4555556666666666666543
No 148
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.28 E-value=40 Score=33.02 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=24.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..++.+|..++
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544445444444444444444444444433333333333333
No 149
>PRK04325 hypothetical protein; Provisional
Probab=63.14 E-value=32 Score=27.22 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.+..||+.|..|+--|....+...+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4778899998888888888888888887766654 444444444445665544
No 150
>PRK00736 hypothetical protein; Provisional
Probab=62.39 E-value=32 Score=26.83 Aligned_cols=50 Identities=8% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+..||+.|..|+--|....+...+.|+.-+..+ +.++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 457888888888888888888888887666654 44444444444555554
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=62.05 E-value=68 Score=31.51 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+--..|...+.+|.+.|..+..+.++..+-....-.+.+..+.++.++.++.+++..-..-...++++++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666677777777777777777777777777788888888888888888888887777777666
No 152
>PRK03918 chromosome segregation protein; Provisional
Probab=61.99 E-value=1e+02 Score=33.23 Aligned_cols=11 Identities=0% Similarity=0.465 Sum_probs=4.2
Q ss_pred HhHhhhhhhHH
Q 020255 153 SKITSVDRDVN 163 (328)
Q Consensus 153 qRId~vD~klD 163 (328)
.+|+.+..+++
T Consensus 640 ~~i~~l~~~~~ 650 (880)
T PRK03918 640 KRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 153
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=61.72 E-value=35 Score=34.64 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhc
Q 020255 60 DLLAEVSSVQQELSH 74 (328)
Q Consensus 60 dL~aQV~~LaqElr~ 74 (328)
+|..+..+|.+++..
T Consensus 231 ~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 231 ELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHhhh
Confidence 366666666666654
No 154
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=61.56 E-value=36 Score=28.11 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
++.|-.+||++..+| .||-+|-|+|-.+|.+..+-.++|+.+..+-..
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777887766555 689999999999999999999999888755443
No 155
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.40 E-value=1.1e+02 Score=26.51 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH---HhhhchhhhhhHHHHHH------
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT---ILRGRSKLIGDEFQSVR------ 194 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~---~v~~dls~ig~Dv~~v~------ 194 (328)
..|++++..+++.++.+++.....-++. ...+-+-|++.......+++-+. .+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988888877655444 33455555555555554444322 23333333444443333
Q ss_pred --------HHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 195 --------DIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 195 --------~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
..|..|+.+|...|.....+..-...+|+
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555555544444444
No 156
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.85 E-value=85 Score=33.35 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+..+++.++.+++++.+-.+..+.+...++.+++.+..+++.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 157
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=60.82 E-value=44 Score=34.47 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHhhhheeeEEecCCCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH------HHHHHH
Q 020255 99 VIVAVGYGYVWWKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 169 (328)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRn---MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klD------eq~eis 169 (328)
...|+++||. ---+|.|=+.-|+.. ..+.++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 4456666553 233455544444444 477778888888888888888876 34445544333 222333
Q ss_pred HHHHHHHHHhhhchhhh
Q 020255 170 QATQEEVTILRGRSKLI 186 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~i 186 (328)
+.++.+++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44455554444444444
No 158
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=60.66 E-value=50 Score=30.49 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
||+..|+.+-.+|.+.+|.....|++ =++++.+++ ..++.+....+.++.-+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~---eI~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELED---EIKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666555444432 222233333 22345556667777777777777776654
No 159
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.45 E-value=36 Score=27.53 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=30.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
...|-+||..|.+++--|....+.+.+.|++-+-.+++
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k 40 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDK 40 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999988888888888777665433
No 160
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=60.37 E-value=5.7 Score=38.20 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-ecCCC--cCchhhhhhhhHHHHHHHHHH
Q 020255 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (328)
Q Consensus 63 aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGws--~SDlMfVTKRnMsnAvasvtK 135 (328)
+--++|+++|++. ...|.|+-++|-|+. .-.+. -+++|+.|.-++| |.|-+ |..-+.+|.++.+|-.++.+.
T Consensus 126 ~sA~~ir~~l~~~~g~~v~VIItDt~gr~-~R~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 126 ASAEKIRRGLRELTGVDVGVIITDTNGRP-FREGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCc-cccCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 4568899999998 788888888855553 23344 4689999999998 77764 334568999988887766543
No 161
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=60.22 E-value=52 Score=22.94 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=21.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
+.|+.+...+-++..+...|..+|.+=..-+.+|...++..+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666665544444444444444433
No 162
>COG5283 Phage-related tail protein [Function unknown]
Probab=60.14 E-value=90 Score=36.47 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|++++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544445555555666554 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhH
Q 020255 203 KLIEIEGKQDITTL 216 (328)
Q Consensus 203 Ki~~ie~kQd~Tn~ 216 (328)
++.++...++.+-.
T Consensus 107 ~~~sas~q~~~a~~ 120 (1213)
T COG5283 107 KLRSLSGQFGVASE 120 (1213)
T ss_pred HHHHHHhhhchhhH
Confidence 99999999887743
No 163
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.99 E-value=1.5e+02 Score=29.78 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020255 189 EFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (328)
++..|+..+..|..||...+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~ 344 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAE 344 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 164
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.48 E-value=32 Score=26.56 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=9.0
Q ss_pred HHHHhHhhhhhhHHH
Q 020255 150 QLSSKITSVDRDVNK 164 (328)
Q Consensus 150 hLsqRId~vD~klDe 164 (328)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666665
No 165
>PLN03184 chloroplast Hsp70; Provisional
Probab=59.44 E-value=99 Score=33.28 Aligned_cols=67 Identities=10% Similarity=0.274 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq-----~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
......+|..|..-|..+..+|++. .+-.+.+++.+.+.+.=|. ++|.+.+++....|+..+..++.
T Consensus 561 ~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 561 KRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666432 1112233333333333333 23444555555555555444443
No 166
>PRK10698 phage shock protein PspA; Provisional
Probab=59.25 E-value=1.6e+02 Score=27.62 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=28.2
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
..+.+..++..+.....-++.++.-+..|+.||.+...+++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666777777777777777777776653
No 167
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.06 E-value=45 Score=37.04 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=16.6
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 020255 146 AAQRQLSSKITSVDRDVNKIVEISQA 171 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~eis~~ 171 (328)
.....+..+|.++|++|+....-++.
T Consensus 40 ~li~ki~~eir~~d~~l~~~Vr~q~N 65 (793)
T KOG2180|consen 40 SLIQKIQGEIRRVDKNLLAVVRTQEN 65 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445667788888888776655443
No 168
>PRK04098 sec-independent translocase; Provisional
Probab=58.85 E-value=32 Score=31.40 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
.-|-.+...+++-+..+-..+..+|.++.+-|. +++--++.....+.+.+.+..+|.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788888888888888889888887653 222222333344555555555554
No 169
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=58.44 E-value=1.1e+02 Score=33.24 Aligned_cols=151 Identities=12% Similarity=0.164 Sum_probs=83.3
Q ss_pred eEEecCCCcC---chhhhhhhhHHH----HHHHHHHhH---HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 107 YVWWKGWKLP---DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 107 YmwWKGws~S---DlMfVTKRnMsn----AvasvtKqL---eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
|-|--|-..+ |+|+---..|+. +-..+++-. +...+.+...-.||.|.+|.-|.+++++..+...++.++
T Consensus 372 ~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 372 KRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred hhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 456555555553 333444443 578888999999999999999999999999998888887
Q ss_pred HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCccceeccccccccccccCCCCCC
Q 020255 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITP 256 (328)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~~pale~~~~~p 256 (328)
..=.+-++.-..+.+.++.-.+.+-.-....+..+.-......-||.--...-......+-|-.. +-+|.+..+-.-+
T Consensus 452 ~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n~~--sel~sl~~~~~~~ 529 (607)
T KOG0240|consen 452 LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQNLK--SELQSLQEPSEHQ 529 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhH--HHHHhhhhcccch
Confidence 65555444444444444443333333333333334444445555664332222222222222222 2355555555555
Q ss_pred CCc
Q 020255 257 SSR 259 (328)
Q Consensus 257 ~sr 259 (328)
+.|
T Consensus 530 ~~r 532 (607)
T KOG0240|consen 530 SKR 532 (607)
T ss_pred hHH
Confidence 555
No 170
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=58.29 E-value=80 Score=33.83 Aligned_cols=93 Identities=6% Similarity=0.142 Sum_probs=59.1
Q ss_pred CcCchhhhhhhhHHHHHH----H-------HHHhHHHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Q 020255 114 KLPDMMFATRRSLSDACN----S-------VARQLEDVYSSISAAQRQLSSKITSVDR--------DVNKIVEISQATQE 174 (328)
Q Consensus 114 s~SDlMfVTKRnMsnAva----s-------vtKqLeqVs~sLaaaKrhLsqRId~vD~--------klDeq~eis~~i~~ 174 (328)
.-++.+.-+-+.|+++.+ . +.-|+..|+.-+.-..+.|..||..+.. .+++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888776642 3 3344444555555566677777766653 34555666677777
Q ss_pred HHHHhhhchhhhhhHHHHHHHHH----HHHHHHHHH
Q 020255 175 EVTILRGRSKLIGDEFQSVRDIV----QTLESKLIE 206 (328)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V----~~Le~Ki~~ 206 (328)
...++++.++.+..||+.|.... +.++.||+.
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt 448 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT 448 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH
Confidence 77778888888888887777653 344555553
No 171
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=58.01 E-value=87 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=15.3
Q ss_pred cccccccchhhccccchhhHHH
Q 020255 297 RPLASRSSMELQNWGSHQGVLR 318 (328)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (328)
|.|..|..|++-.||.|.++-|
T Consensus 239 ~AlG~~~~mdvt~eG~~s~~~~ 260 (330)
T PF07851_consen 239 RALGKRHNMDVTVEGFQSWMWR 260 (330)
T ss_pred HHhccCccceeeecccccchhc
Confidence 4566777777777777777655
No 172
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=57.93 E-value=97 Score=25.94 Aligned_cols=19 Identities=0% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 020255 128 DACNSVARQLEDVYSSISA 146 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaa 146 (328)
+-|..|..+|..+...+..
T Consensus 6 ~~v~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555433
No 173
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=57.89 E-value=84 Score=24.13 Aligned_cols=60 Identities=10% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
...+.|.+.|+..+..|.. +...=-.+.-.+-+.+..+..++..++..+..|...+..+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455444443322 22222333444555555666666666666666666665554
No 174
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=57.82 E-value=93 Score=31.05 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=13.7
Q ss_pred HHHHhhhheeeEEecCC
Q 020255 97 IVVIVAVGYGYVWWKGW 113 (328)
Q Consensus 97 ~a~iGavGYgYmwWKGw 113 (328)
++++|+.||.|.++-..
T Consensus 40 ~~alg~~~~~~~~~q~~ 56 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQ 56 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36999999999988653
No 175
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=57.68 E-value=62 Score=27.76 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888887777
No 176
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=57.24 E-value=85 Score=23.99 Aligned_cols=62 Identities=10% Similarity=0.229 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh---hHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~---klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
+-+-|..+...|+.+...+..-++--...+-..+. --++..+++..|+.....++..|..+.
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~ 69 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLS 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877766766666662 223333344444444444444333333
No 177
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=57.21 E-value=82 Score=33.58 Aligned_cols=84 Identities=14% Similarity=0.334 Sum_probs=66.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
+.|..+-..-..++.++.+.++.|..-++.+...|...-+++....+-...+.+++..+ ...|.+...+.+--..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 66777788888999999999999999999999888887777777777777777777666 56777777777777777
Q ss_pred HHHHHHhh
Q 020255 201 ESKLIEIE 208 (328)
Q Consensus 201 e~Ki~~ie 208 (328)
..+|..+=
T Consensus 207 v~eLs~~i 214 (552)
T COG1256 207 VDELSQLI 214 (552)
T ss_pred HHHHHhhc
Confidence 77777543
No 178
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=57.15 E-value=1.4e+02 Score=26.44 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=61.9
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHHH-----HHhhhchhhh
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEV-----TILRGRSKLI 186 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~---eis~~i~~eV-----~~v~~dls~i 186 (328)
+.|+|.=.-++..+-++.+-..|++++..=..|+.....=-+.+...+.... .+-.++.++| ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5678888888888888888888888887777776655444444444433211 3333333332 3333444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
-.-+..++.+++.+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888754
No 179
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.00 E-value=1.5e+02 Score=28.16 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhhchhhhhhHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKr---hLsqRId~vD~klDeq~eis~~i~~e--V~~v~~dls~ig~Dv~~v~~~V 197 (328)
+.++.+.|...-++++++.+.+..-|+ .|.++|..+..+++..++.....+-. |...-++.+. ++.+..+.
T Consensus 94 ~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fe--- 169 (225)
T COG1842 94 KQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFE--- 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHH---
Q ss_pred HHHHHHHHHhhhh
Q 020255 198 QTLESKLIEIEGK 210 (328)
Q Consensus 198 ~~Le~Ki~~ie~k 210 (328)
-+|.||+++|..
T Consensus 170 -r~e~kiee~ea~ 181 (225)
T COG1842 170 -RMEEKIEEREAR 181 (225)
T ss_pred -HHHHHHHHHHHH
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.66 E-value=2.1e+02 Score=28.33 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH----HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ----EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~----~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
|.+.-+-+...+-.|..|-+.|..++++..++...+. ++...+|.++.....++...+.-+..++..+..++.+=.
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555542 255556666666666666666666666666666555533
No 181
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=56.52 E-value=1.7e+02 Score=27.31 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 020255 193 VRDIVQTLE 201 (328)
Q Consensus 193 v~~~V~~Le 201 (328)
++.++..+.
T Consensus 232 l~~~l~~l~ 240 (291)
T TIGR00996 232 LDDALAALS 240 (291)
T ss_pred HHHHHHHHH
Confidence 333333333
No 182
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.47 E-value=29 Score=37.30 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=11.8
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
....+..+...++....+.+.+++.+..
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~~~~ 410 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQYQD 410 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444445544443
No 183
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=56.43 E-value=95 Score=29.46 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=11.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 020255 156 TSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 156 d~vD~klDeq~eis~~i~~eV 176 (328)
+.+.+-++..+++...|++++
T Consensus 6 ~~~~d~~~~l~~v~~~iK~~~ 26 (205)
T PF12238_consen 6 DSSKDALKALKKVLDLIKENP 26 (205)
T ss_pred hhhHHHHHHHHHHHHHHccCC
Confidence 344455556666666666553
No 184
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.40 E-value=33 Score=32.01 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.3
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.-+|+-++...|+++..|+++++.-...|+.+++
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777778888888888766666666655
No 185
>PLN02678 seryl-tRNA synthetase
Probab=56.32 E-value=45 Score=34.58 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+-.-+|.+..+++.+..+ .++++++|... ..-.++.+.+..++..+.+-+..||.++..++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777766654 55566666541 1222333344444445554445555555555444
No 186
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.30 E-value=43 Score=31.80 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e--V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.+..++....|.+++-+..+... +.+.|-|| +.-=+..+..|-+|++.+++-|.-||.||+++|.|
T Consensus 134 ~~~~~l~~~~~~l~~~~~~~q~~------~Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 134 SVVRALRSGSRFLKHGLKQLQRN------LAEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555443322 22333343 22234567889999999999999999999999976
No 187
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=56.25 E-value=1.3e+02 Score=27.97 Aligned_cols=117 Identities=26% Similarity=0.311 Sum_probs=64.8
Q ss_pred hhHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------
Q 020255 124 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGRSKLI------- 186 (328)
Q Consensus 124 RnMsnAvasvt--KqL-eqVs~sLaaaKrhLsqRI-------d~vD~klDeq~eis~~i~~eV~~v~~dls~i------- 186 (328)
|.|-+|...++ +.+ +...+.|-.||.+|.-=| .++=+.+|....++..+.+++.++.....++
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 44555555543 334 556667777777664322 2344455666666666666666665432222
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHhhccCCCccceecc
Q 020255 187 ----------GDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQAS 240 (328)
Q Consensus 187 ----------g~Dv~~v~~~V~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~ 240 (328)
..-+..+.+....++.++-+|= .=||+|-+=|..++..++.+|..-..-+.--.
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~g 159 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIFG 159 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1122223333333333433332 33999999999999999998887766655443
No 188
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.24 E-value=79 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhHhhhhhhHHHH
Q 020255 123 RRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRDVNKI 165 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs---~sLaaaKrhLsqRId~vD~klDeq 165 (328)
|-.+++=.+++...||+.- +-|.+-|+.|....+.+...-+..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~ 56 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASR 56 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 224444444444444444433333
No 189
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.08 E-value=1.3e+02 Score=25.79 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=58.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
.+..++.+.|+.|-.=|. -.+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..+
T Consensus 28 ~~~~~~~~vin~i~~Ll~-~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQ-QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444442 2334455677777888888888888777777777888777777777777777777777777
Q ss_pred HHHHHHhhh
Q 020255 201 ESKLIEIEG 209 (328)
Q Consensus 201 e~Ki~~ie~ 209 (328)
+.++.....
T Consensus 107 ~~~~k~~ke 115 (151)
T PF11559_consen 107 EAKLKQEKE 115 (151)
T ss_pred HHHHHHHHH
Confidence 777665544
No 190
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.92 E-value=34 Score=30.04 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=43.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (328)
+=.++++.|..|+-..+.++-.|.+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 3345566666666666777777777776666667777777776665555544555555433 6777777
No 191
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.72 E-value=94 Score=29.95 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=60.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (328)
++.-++|.++.+|-....|...+.++..++..|..+.+-=+...-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999988888877777776666666667788888888887777777777776644
No 192
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.63 E-value=1.7e+02 Score=26.94 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhHh-hhhhhHHHHHHHHHHHHHH---HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 020255 142 SSISAAQRQLSSKIT-SVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (328)
Q Consensus 142 ~sLaaaKrhLsqRId-~vD~klDeq~eis~~i~~e---V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (328)
++|+.||++=..|-- .-.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++..-..-
T Consensus 61 ~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 61 EAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655443321 0223366666666665543 555555666777778888888888888888887766665555
Q ss_pred HHHHHHHH
Q 020255 218 VKKLCDRA 225 (328)
Q Consensus 218 V~~LC~f~ 225 (328)
-..|...+
T Consensus 141 Y~~L~~Im 148 (161)
T TIGR02894 141 YQTLIDIM 148 (161)
T ss_pred HHHHHHHH
Confidence 55555444
No 193
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=55.59 E-value=1.4e+02 Score=30.41 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=51.8
Q ss_pred HHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH---HHHHHHHHHHH
Q 020255 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE 175 (328)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe---q~eis~~i~~e 175 (328)
..+++|-|+ +---..+|=||.---++.||-..++.-=.+|++.....+.-+.+.+++|+.-.++ -.+..+.+++.
T Consensus 73 c~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~ 150 (406)
T PF04906_consen 73 CCAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQ 150 (406)
T ss_pred HHHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445666543 3334467778877777777777777555666666666666666666666665533 33444445555
Q ss_pred HHHhhhchhhhh
Q 020255 176 VTILRGRSKLIG 187 (328)
Q Consensus 176 V~~v~~dls~ig 187 (328)
++.+-..+..|.
T Consensus 151 ~~~v~~~l~~l~ 162 (406)
T PF04906_consen 151 AENVVQQLDELP 162 (406)
T ss_pred HHHHHHHHhcCc
Confidence 555555444443
No 194
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=55.40 E-value=54 Score=27.82 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLs 152 (328)
||++-++++.+.+||.+.++.|.+-|+++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544443
No 195
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.36 E-value=26 Score=26.96 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=2.9
Q ss_pred hhhhhhHH
Q 020255 156 TSVDRDVN 163 (328)
Q Consensus 156 d~vD~klD 163 (328)
+.+..++.
T Consensus 3 ~elEn~~~ 10 (55)
T PF05377_consen 3 DELENELP 10 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 196
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.30 E-value=2.1e+02 Score=27.86 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h--HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------hhH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---K--ITSVDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 189 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq---R--Id~vD~klDeq~eis~~i~~eV~~v~~dls~i-------g~D 189 (328)
.++.-.+|+.-+.+||+.....|..+.+.|.. + +-.++..-....+....++.+..+++..+... .-+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 44556789999999999999999999877754 1 11122333334445555556655555555443 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020255 190 FQSVRDIVQTLESKLIE 206 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (328)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555556666665554
No 197
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=55.02 E-value=1.9e+02 Score=27.39 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHh
Q 020255 190 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE 227 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~---Tn~GV~~LC~f~~~ 227 (328)
...+++=|..-..||.++|.+|+- .|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 455666788888899999998864 57788899988754
No 198
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=54.48 E-value=1.1e+02 Score=24.58 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 020255 197 VQTLESKL 204 (328)
Q Consensus 197 V~~Le~Ki 204 (328)
|..++.+|
T Consensus 86 v~~~~~~i 93 (97)
T PF09177_consen 86 VSAIRNQI 93 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 199
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.46 E-value=1e+02 Score=31.34 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d-ls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
.+-..+|.+..+++++. .+.++++++|+.... -.++ .+.+..++..+.+-+..||.++..++.+.+
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 100 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQ 100 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777765 567777888866321 1123 444555555566555556666666555543
No 200
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.43 E-value=1.1e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klD 163 (328)
.++...+...+.++.+....+|.++....+.+-.-|+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 201
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.99 E-value=66 Score=32.76 Aligned_cols=64 Identities=14% Similarity=0.282 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
+-..+|.+..+|+++..+ .++++++|+... .-+++.+.+..++..+++-+..||.++..++.+-
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677787777777654 556666665421 1122444455555666655555666666555543
No 202
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.89 E-value=1.1e+02 Score=25.15 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=43.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
++.|..|+.+..+.+...+-||.+++++=.....+++.++.--..|+.+-..+..-|+.=..-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777666666666666666666666666665555555544444
No 203
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.86 E-value=1.4e+02 Score=27.02 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=33.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
+.+.+.|+.+.+.+..=+.+...=|..|.+=-+++..=....+..+.++..-+..-+.+|..++.-+..+.++
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444455555555555555555555555444444333
No 204
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.78 E-value=86 Score=32.73 Aligned_cols=107 Identities=14% Similarity=0.246 Sum_probs=64.8
Q ss_pred cCchhhhhhhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 115 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 115 ~SDlMfVTKRnMsn----AvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
.-|......+.|.. ....+...|++++..|..+...|....+.++-.=++..+ +++....++.-....|.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCCH
Confidence 44566666666644 667788888899999999999998888877643322222 3344444444444455566
Q ss_pred HHHHHHHHHHHHHHHHhh----------hhhhhhhHHHHHHHHHH
Q 020255 191 QSVRDIVQTLESKLIEIE----------GKQDITTLGVKKLCDRA 225 (328)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie----------~kQd~Tn~GV~~LC~f~ 225 (328)
+.+......++.+++.++ .+.+-...-+..+|+-+
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555544 34444455555555544
No 205
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.64 E-value=1.8e+02 Score=32.33 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
..+.++|..+.++++-+-....+..+...++.....+++-+...+...-..-..++...+-....++..+|--+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999998889999998888899999999888888888
Q ss_pred HHHhhhhhhhhhHHHHHHHH
Q 020255 204 LIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC~ 223 (328)
+++....=+-.+.-+..+-+
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~ 214 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQA 214 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88776655555554444433
No 206
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.48 E-value=80 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020255 189 EFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.+.++..-+..|+.||..+.
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 207
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=53.47 E-value=1.3e+02 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 171 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLa-----aaKrhLsqRId~vD~klDeq~eis~~ 171 (328)
++.+.++-..|-++.-.+. ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555544 56889999999999999999888887
No 208
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=53.41 E-value=13 Score=39.55 Aligned_cols=62 Identities=11% Similarity=0.255 Sum_probs=47.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLa-------aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
=|-+++=.+|++.++++|..+.+-.. ..=.++.+||+++++++|+...=.-.-+.|+-.+-+
T Consensus 363 AAD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlle 431 (550)
T PF00509_consen 363 AADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLE 431 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhc
Confidence 36789999999999999998887552 233468899999999999987766666666544433
No 209
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=53.24 E-value=1.2e+02 Score=32.84 Aligned_cols=90 Identities=13% Similarity=0.176 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
.-|...|.+-...|.++..--...|.-|...+..+..+.+....=++.-.++|..+|..+..+-.|++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888889999999999999999999999999988887777777777889999999999999999988888888888
Q ss_pred HHHhhhhhhh
Q 020255 204 LIEIEGKQDI 213 (328)
Q Consensus 204 i~~ie~kQd~ 213 (328)
+.++...-++
T Consensus 477 ~e~~~k~~~R 486 (594)
T PF05667_consen 477 LEKLPKDVNR 486 (594)
T ss_pred HHhCCCCCCH
Confidence 8887765433
No 210
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=53.15 E-value=1e+02 Score=30.22 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 141 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 141 s~sLaaaKrhLsqR---Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+..|+..-||+.+. |..-|..|=+.-|.+-..-+||.+++.|-.+|.++++.|-.--..||.-|+.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777887765 55668889999999999999999999999999999999988888888888877765
No 211
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=53.02 E-value=2.9e+02 Score=28.92 Aligned_cols=71 Identities=7% Similarity=0.128 Sum_probs=51.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (328)
+..+-..|++...=....+.+...++..+..+..+++..+..+.+.|.||.....--+.+...--.--.-+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~i 437 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEI 437 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777788888888888999999999999999999998876655555555444433333
No 212
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=52.97 E-value=4.5 Score=34.84 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred HhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 178 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
.....+...+.-+..+...+..|..|+..++..++.
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333444444555555555666666666666555
No 213
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.73 E-value=81 Score=28.47 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
+-+.|-.+-++|+.-|+.|....+-+.
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~ 29 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQENQA 29 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777766655444433
No 214
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.71 E-value=71 Score=25.37 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
|+.=...+-.|=..|..+|+.+-.+-++.. ++-.+++....+...|-..++..+.+|=+||+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333333344444444444444333333 333333334455555666666666666666654
No 215
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=52.68 E-value=1.2e+02 Score=24.51 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 186 (328)
+...|+.-.+.|...-....+|++.+.....+-.++.+.++.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555566666666666666666666666665555544333
No 216
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.67 E-value=69 Score=31.05 Aligned_cols=17 Identities=24% Similarity=0.318 Sum_probs=10.6
Q ss_pred CCCCCCCCCccchhhcc
Q 020255 276 XXXXXXXIPMDLIRLTG 292 (328)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (328)
+..+....||-.|+|-|
T Consensus 100 ~~~~~~~rpD~vI~LP~ 116 (304)
T PF02646_consen 100 DEDGNGLRPDFVIHLPG 116 (304)
T ss_pred cCCCCCcCceEEEEcCC
Confidence 33455677777777743
No 217
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.57 E-value=1.8e+02 Score=34.55 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=21.4
Q ss_pred HhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 178 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
++++-+..+..|+...++.+...+......|.+-.-++.-+..|=.-++
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433333
No 218
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=52.47 E-value=2.7e+02 Score=28.30 Aligned_cols=23 Identities=4% Similarity=0.286 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISA 146 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaa 146 (328)
..|++-.+++++|-|+=..++.-
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887777663
No 219
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=52.44 E-value=2.1e+02 Score=29.90 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=34.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
|.+.+++..---+..+.+..........+..++.+++.+|.+||.....+.-+-.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
Confidence 3333444333334444444444444566788999999999999998887765543
No 220
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=52.43 E-value=91 Score=23.08 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=20.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
|++-..-+++..++..+|.+++..=++.|..+...+..+...+.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~ 53 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLP 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555555555554444444444444444443333
No 221
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.22 E-value=1.4e+02 Score=34.26 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
|.+.---+.+++-|-|.-+-+...+++|.--=+.....+.+..+..+-...++.+.......|+.++..-+.-+++++.|
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 33333345567777777777777777666555555556666666677777788888888888999999999999999999
Q ss_pred HHHhhhhhhhhhHHHHHHHHHH
Q 020255 204 LIEIEGKQDITTLGVKKLCDRA 225 (328)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC~f~ 225 (328)
+.++|.+-|.+.+-|..|-+--
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999888888776543
No 222
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.16 E-value=1.7e+02 Score=30.02 Aligned_cols=69 Identities=4% Similarity=0.080 Sum_probs=48.6
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
-+||++-+.-|.+.-+-. ..|..-+|.|+.-++||-.-+++|+..+-..++-+.-.++.|.|+.+|.++
T Consensus 217 eklR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 356666666666655443 346677777777777777777777777777777777777777777777665
No 223
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.07 E-value=83 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis 169 (328)
.|..-..-+..+|+.+...|....+..++....|...+....+..
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555555555555555544444333
No 224
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=51.82 E-value=2e+02 Score=26.58 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=53.2
Q ss_pred ecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 020255 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 110 WKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 189 (328)
+.+|+.+. ..|.++...+|..+|..+.++..+-.. .++.-+-|.|....+..++.=+. +.++.+...|
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46788888 699999999999999988888875544 46778888888888888887443 6666666655
Q ss_pred H
Q 020255 190 F 190 (328)
Q Consensus 190 v 190 (328)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 225
>PRK11032 hypothetical protein; Provisional
Probab=51.80 E-value=71 Score=29.05 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhhHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEF 190 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~----v~~dls~ig~Dv 190 (328)
|++|.+.|...+..|..=|+...+.+. +..+.+++|+.. +++||+++...+
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~---~~~elT~dEl~lv~~ylkRDL~ef~~~~ 66 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVD---AAGELTRDEVDLITRAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544444444444 444456666543 567777776643
No 226
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.78 E-value=1.7e+02 Score=25.70 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (328)
..|++++..++|+..+|-..==+.|-|=.+.|+.+.+--++++..-...+.+=..+..|.=.-|.-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777788888888888888888888888877766666655444444333
No 227
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=51.46 E-value=1.5e+02 Score=25.54 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020255 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (328)
Q Consensus 156 d~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (328)
+.|.....+.-+-++.|..|.-.++..+..+...-...-.++..+..+|.+|..=|+.+
T Consensus 36 d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 36 DHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 33444444555666666666666676667777666666677777777777665555443
No 228
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.43 E-value=58 Score=29.51 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=28.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
=|+.+...-++.-+|.+..++|...++..|+.+..++..+-.-|..||.
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555556666666666666666666666655555555555555543
No 229
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.30 E-value=2e+02 Score=26.55 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=35.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
=++++...|..++.|+-+.++-...++.+..+.-..+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555555555555555666666665555555554443
No 230
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.24 E-value=38 Score=33.96 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 020255 191 QSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~k 210 (328)
+.....+..|+.|++.+|..
T Consensus 168 ~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 168 KELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33334444455555555543
No 231
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.17 E-value=86 Score=36.71 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH-HHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~-~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
.|...-+++..+...+++.+.++.+....++++...++.++++|...+..++. .+. ++.|+..+..+-+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 44445556667777788888888888889999999999998888888888887 555 8888888777777666666665
Q ss_pred HHH
Q 020255 222 CDR 224 (328)
Q Consensus 222 C~f 224 (328)
-..
T Consensus 1039 ~k~ 1041 (1293)
T KOG0996|consen 1039 EKE 1041 (1293)
T ss_pred HHh
Confidence 433
No 232
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.17 E-value=81 Score=36.89 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
++.-...+..+-+|+++.|..+.+++++-..-...+.+.....+..+.+...+++.+...-..++.+++.+..+=+....
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33334455666677777777777777777666666666677777777777777777777777777777766665555555
Q ss_pred HHH
Q 020255 217 GVK 219 (328)
Q Consensus 217 GV~ 219 (328)
|+.
T Consensus 476 ~~~ 478 (1293)
T KOG0996|consen 476 GIR 478 (1293)
T ss_pred hhH
Confidence 543
No 233
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.10 E-value=1.4e+02 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.9
Q ss_pred HhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 178 ILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 178 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
....++..|.+||+.|.+=|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888899999999999999997664
No 234
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.93 E-value=1.7e+02 Score=30.14 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhh------------------hHHHHHHHHHHHHHHHHHhhhchh
Q 020255 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaK---rhLsqRId~vD~------------------klDeq~eis~~i~~eV~~v~~dls 184 (328)
-+.++..+-++|+++.+.+++++ ..+.+++.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555444332 333344433322 234445555555556666655555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
....+++.+++-+..|+.+|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555555555555555555555543
No 235
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=50.88 E-value=46 Score=30.95 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred hhHHHHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020255 93 KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (328)
Q Consensus 93 ~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId 156 (328)
.|+-.+++++|++-|+| .=++-..=.+-.++...++...=...+..-.+++.+|++.+....+
T Consensus 35 ~yGWyil~~~I~ly~l~-qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 35 SYGWYILFGCILLYLLW-QKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554444 4343332222234444444433344556678888888888765443
No 236
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=50.86 E-value=35 Score=31.38 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 161 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
+|.++.+--.+|.+.|.+..++|+.|++++..
T Consensus 129 ~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 129 KLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred hHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555555555555555554443
No 237
>PLN02867 Probable galacturonosyltransferase
Probab=50.73 E-value=68 Score=34.37 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 165 q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
..+--+++-.|++..+-|...+ +..++.|++.+|.++....
T Consensus 118 ~~~~~~~~~~~~~~~~~d~~~~---~~kl~am~~~~e~~~~~~~ 158 (535)
T PLN02867 118 STESFNDLVKEMTSNRQDIKAF---AFRTKAMLLKMERKVQSAR 158 (535)
T ss_pred hhhHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455554444 5667788888888876543
No 238
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=50.57 E-value=86 Score=27.34 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD-------~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
+.+..|++.+...+...|+++.+=-|+.| .++||..+-...+...+..+++|++.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45778888888888888888876655544 35566555555555555555554443
No 239
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.47 E-value=1.2e+02 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 174 (328)
++|++-++-+.++|+-+.+|++.++.|++++..--+..++
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666665555444444443
No 240
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=50.27 E-value=2.2e+02 Score=29.95 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH--HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq--~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
++.++.+.++-.++...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++....+...|+ +|
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L 105 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE-QL 105 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344444555555555555444 35667777777777443 236677788888888888888888888777766665 44
Q ss_pred HHhh
Q 020255 205 IEIE 208 (328)
Q Consensus 205 ~~ie 208 (328)
.+++
T Consensus 106 ~~i~ 109 (593)
T PF06248_consen 106 QEID 109 (593)
T ss_pred HHHH
Confidence 4333
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=50.27 E-value=48 Score=29.59 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888899999999999998866 6778888888888888888888777777666553
No 242
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.06 E-value=1.1e+02 Score=27.53 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCDR 224 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~-Le~Ki~~ie~kQd~Tn~GV~~LC~f 224 (328)
++...|+.++.+|.....+...+-+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+.
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~ 83 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKY 83 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888888888888888888777777777 7777777766555555555555443
No 243
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=49.90 E-value=97 Score=22.46 Aligned_cols=9 Identities=56% Similarity=0.637 Sum_probs=3.3
Q ss_pred HHHHhHhhh
Q 020255 150 QLSSKITSV 158 (328)
Q Consensus 150 hLsqRId~v 158 (328)
.|...++.+
T Consensus 29 ~l~~~~~~l 37 (86)
T PF06013_consen 29 QLESSIDSL 37 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 244
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.79 E-value=1.7e+02 Score=31.50 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
.+..++...+..-|+.--..+...=+.|..+|.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677777777777766666667778899999999998887654
No 245
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=49.56 E-value=87 Score=31.33 Aligned_cols=52 Identities=21% Similarity=0.523 Sum_probs=27.5
Q ss_pred chhHHHHHHhhhheeeEE-----ecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 020255 92 KKYGVIVVIVAVGYGYVW-----WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (328)
Q Consensus 92 ~~y~l~a~iGavGYgYmw-----WKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaa 147 (328)
+.+|++.++.-+|||-+- |+.-.- |-..+.+++.......++++.-+.+...
T Consensus 166 ~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 166 NFWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 356665566678888642 554322 4444445554455555555554444444
No 246
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=49.54 E-value=1.3e+02 Score=27.70 Aligned_cols=82 Identities=11% Similarity=0.261 Sum_probs=56.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH-----HHHHHHHHHHHHHHHHhhhchhhhhhH----HHHHHHHHHHHHHH
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDE----FQSVRDIVQTLESK 203 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~kl-----Deq~eis~~i~~eV~~v~~dls~ig~D----v~~v~~~V~~Le~K 203 (328)
+-++|-.--..|..||.+|.+.|+.-..-+ +.+.-.-......|+++...|+.|..| +..+++.....+.=
T Consensus 5 l~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eF 84 (157)
T PF04778_consen 5 LDKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEF 84 (157)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555678888888888887766554 445555566777888888888888765 55666666666666
Q ss_pred HHHhhhhhhhh
Q 020255 204 LIEIEGKQDIT 214 (328)
Q Consensus 204 i~~ie~kQd~T 214 (328)
|.....+++|+
T Consensus 85 i~~~K~NpnY~ 95 (157)
T PF04778_consen 85 INKNKNNPNYA 95 (157)
T ss_pred HhhccCCccHH
Confidence 77777777777
No 247
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.45 E-value=1.1e+02 Score=31.94 Aligned_cols=44 Identities=11% Similarity=0.327 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVE 167 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~e 167 (328)
..+.+.+.++--+|+.+...|..-...+. .|++.+..++.....
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 56666667777777777777766554443 344444444444444
No 248
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.37 E-value=38 Score=28.00 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHHHhHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDV 140 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqV 140 (328)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6765 56777777776666655
No 249
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=49.24 E-value=67 Score=30.16 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~v---D~klDeq~eis~~i~~eV~~v~~dls~ig~ 188 (328)
+.-.++|+..++..+|+=|..-|+.+ |+|||.+..++..+.-++.-++-....++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458888999999999999988887 889999999999999988777766555544
No 250
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.03 E-value=2.1e+02 Score=26.14 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 113 ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
|+|+.-... .+.+.++.+.+.++++...++..+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678866554 44566777777777777766666665544
No 251
>PHA01750 hypothetical protein
Probab=48.77 E-value=36 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=22.9
Q ss_pred chhhhhhhhHHHHHHHHH-HhHHHHHHHHHHHH
Q 020255 117 DMMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvt-KqLeqVs~sLaaaK 148 (328)
.+-|--|..+.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566888999998754 45777777777766
No 252
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.74 E-value=2.5e+02 Score=26.86 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+-+=+-|+-+-.||.+--+++++-..||-.|+..|+.++.-.-|-....++.-
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~y 143 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQY 143 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557799999999999999999999999999999999987766666666553
No 253
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=48.35 E-value=93 Score=30.34 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=70.2
Q ss_pred hHHHHHHhhhheeeEEecC-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 020255 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (328)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR---Id~vD~klDeq 165 (328)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++.-++.+..++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888888887555 66777777765444 34457778899999999999988777 55667888888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 020255 166 VEISQATQEE-VTILRGRSKLIGD 188 (328)
Q Consensus 166 ~eis~~i~~e-V~~v~~dls~ig~ 188 (328)
.+++...|+| +-.+..+++++.+
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8999998888 6666666766664
No 254
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=48.34 E-value=1.8e+02 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=42.0
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 3445566788888888899999999999998777788888888888887765
No 255
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.34 E-value=1.4e+02 Score=28.25 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHH-------HHHHHHHHHHHH--H----HHhhhchhhhhhH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVN-------KIVEISQATQEE--V----TILRGRSKLIGDE 189 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaa-KrhLsqRId~vD~klD-------eq~eis~~i~~e--V----~~v~~dls~ig~D 189 (328)
.+..+.+..+.++++++.+.+-.. +++...||-++...+- .+.++...+... . .+.+..+..+.++
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~ 224 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDH 224 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 345567778888888887776442 3344444544444444 333333333221 1 2223334445556
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020255 190 FQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (328)
++.+.+++..+..+++.+.
T Consensus 225 ~~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 225 ILSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777654
No 256
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.31 E-value=51 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 186 (328)
...+..+|..+++.++..++.+..-.+.+.+++.+++..+...
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 257
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.25 E-value=58 Score=25.16 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=9.3
Q ss_pred HHHHHHHhhhchhhhhhHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+++++..+..++.++..+++.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 258
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.23 E-value=2.4e+02 Score=26.56 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
..-|.+|...++++-..+++...--..-...-..+..++..+..|++.....-..|+.+|..+...=+|
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333344444455555555567777777777788887777755444
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.21 E-value=75 Score=31.21 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
=+.++++.....|+...+.|+..+.+|. .+|+.+-.+.++...-...+++++......+.+
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3667777777777777777776665543 344445555555544455555555544444333
No 260
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.16 E-value=2.3e+02 Score=30.61 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=13.8
Q ss_pred HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
..+++.+.....-++.-++-+..|..-+..+-..
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~ 319 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNV 319 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433333
No 261
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.09 E-value=49 Score=37.38 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
+.=-|||++=-++|..-+++|++||+.|.+++-.+++..+.+.....-....+++..-.|+..+++
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999999888888777777666555555555555555555554
No 262
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.09 E-value=2.5e+02 Score=27.63 Aligned_cols=80 Identities=8% Similarity=0.184 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 142 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
+.|...++.|.+.++.+...-++..+-.+..++|..++...-.++-.+...++.-...++.+.++++..-+++..=+..|
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777766666666666666666555555455555555555555555555555555444444443333
No 263
>PHA03185 UL14 tegument protein; Provisional
Probab=47.92 E-value=2.6e+02 Score=26.83 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i 172 (328)
.+||..+..||.... -|.+++ |++..+..++++|.++..-.
T Consensus 51 K~A~~dl~aqLrS~a-Rve~Ve----QKar~Iq~rVEeQ~a~r~iL 91 (214)
T PHA03185 51 KAAHRELEARLKSRA-RLEMLR----QHAACVKIRVEEQAERRDFL 91 (214)
T ss_pred HHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 357888888886544 455544 34555666667766654433
No 264
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=47.86 E-value=1.9e+02 Score=28.07 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=33.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+.|...-++-..++.++.+.++.|...++.....|+..-++++...+-...+.+++
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I 182 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEI 182 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777776666666544444444444343444444
No 265
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.84 E-value=1.3e+02 Score=31.06 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----------HHHHHHhhhchhhhhhHHHHHHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i-----------~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
.+...--+.|++--+.+.....++..+++.++.++.-...+.... ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444443444555555555566666777777777765555554322 113555666666677777777777
Q ss_pred HHHHHHHHHHhhhhhhhhhH
Q 020255 197 VQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 197 V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
...|+.++..++.+.+....
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776555443
No 266
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=47.79 E-value=1.1e+02 Score=29.29 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=50.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH-----H
Q 020255 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----E 206 (328)
Q Consensus 132 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~-----~ 206 (328)
++-+|++..-+.=++-|.++..-++.++.++.+.+..-..+...-+.+-.....-..|+..+++--.+|-.... +
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 45566666655555555555554444444444333332222211111111111222334444444444443332 3
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccC
Q 020255 207 IEGKQDITTLGVKKLCDRARELENG 231 (328)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (328)
..++=++..+++.+|..|+..++-+
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~ 110 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETG 110 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhc
Confidence 4456678899999999999988877
No 267
>COG1511 Predicted membrane protein [Function unknown]
Probab=47.64 E-value=2e+02 Score=31.68 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhHHHHHHHH-H-HHHH-------HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSI-S-AAQR-------QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sL-a-aaKr-------hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
.++++.+.+++++-..+... . .+=+ .....+..+.+-+++.....+.+.+....+..-...+.+++..+..
T Consensus 148 ~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (780)
T COG1511 148 AADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTS 227 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHhh
Confidence 44555555555555554444 1 1111 1223344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Q 020255 196 IVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (328)
Q Consensus 196 ~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (328)
-+..+.+++..+....+.-+.|+..|-+.++.+
T Consensus 228 ~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~~i 260 (780)
T COG1511 228 GLTTLTDGLNQLDSGLGTLAAGIGELKQGAEQL 260 (780)
T ss_pred hhHHHhhhHHHHHhhhhHHhhhhHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 268
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=47.59 E-value=81 Score=34.50 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCcCchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020255 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (328)
Q Consensus 113 ws~SDlMfVTKR--nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~v 158 (328)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.+++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l 59 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGL 59 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555555554 2334555666799999999999999887654443
No 269
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.58 E-value=2.2e+02 Score=25.83 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 189 (328)
...|..=++++..-|+.-...-++..++.+..++++.+++....+|+.|
T Consensus 36 ~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555666666666666666666666655
No 270
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.51 E-value=2.2e+02 Score=25.79 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
...+++..++..+......+..++.-+..|+.||..+..+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777776655
No 271
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=47.28 E-value=1.1e+02 Score=25.21 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
++.+...++.+-+....|-+.|..+...|+.=+++-+-...++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~ 86 (113)
T PF02520_consen 42 KAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQE 86 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHH
Confidence 333344444444444444444444444444444433333333333
No 272
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=46.87 E-value=49 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=11.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
+..+..+++++++...=...++++|..++.++.+....++
T Consensus 61 s~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 61 STNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp -------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333
No 273
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=46.61 E-value=58 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=14.7
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLs 152 (328)
++|+.+.+ .+-...+....+.+.+.+.....+..
T Consensus 17 lL~aP~sG-~e~R~~l~~~~~~~~~~~~~~~~~~~ 50 (74)
T PF12732_consen 17 LLFAPKSG-KETREKLKDKAEDLKDKAKDLYEEAK 50 (74)
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 33344444444444444444444433
No 274
>PRK10869 recombination and repair protein; Provisional
Probab=46.43 E-value=1.2e+02 Score=32.03 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=56.9
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 114 s~SDlMfVTKRnMsnA------vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
+.-|.+.-..+.|... ...+...|++++..|..+.+.|..-.+.++-.=++..++.+.+ ..+..++. ..|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl-~~l~~L~r---Kyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRL-SKQISLAR---KHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHHH---HhC
Confidence 3455566666666544 3557777888888888888888887776654433333333222 12222222 234
Q ss_pred hHHHHHHHHHHHHHHHHH----------HhhhhhhhhhHHHHHHHH
Q 020255 188 DEFQSVRDIVQTLESKLI----------EIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~----------~ie~kQd~Tn~GV~~LC~ 223 (328)
.+++.|-..-..++.+++ .++...+-.-.-+..+|+
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 444444444445555544
No 275
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=46.36 E-value=8.1 Score=40.39 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eeeEcCcccceeec----cCCC
Q 020255 9 TFLVGAGILTSVLA----KEGR 26 (328)
Q Consensus 9 ~ILvGAG~~GSVl~----knGk 26 (328)
+|+||||++|+.++ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 276
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.26 E-value=1.2e+02 Score=32.77 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=66.7
Q ss_pred CcCchhhhhhhhHHHHH------HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh---HHHHHHHHHHHHHHHHHhhhchh
Q 020255 114 KLPDMMFATRRSLSDAC------NSVARQLEDVYSSISAAQRQLSSKITSVDRD---VNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 114 s~SDlMfVTKRnMsnAv------asvtKqLeqVs~sLaaaKrhLsqRId~vD~k---lDeq~eis~~i~~eV~~v~~dls 184 (328)
+..|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|..-++.++-. |++..+=...++.=--.-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45677777777776544 3567777777777777777777777777664 55544444444433333444444
Q ss_pred hhhhHHHHHHHHHHHH---HHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 185 LIGDEFQSVRDIVQTL---ESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~L---e~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
.+-.-.+.++.=...| |.++..+|..-+..-.-....|+-..
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 44555666666666666666666553
No 277
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.08 E-value=76 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=8.0
Q ss_pred cchhhhhhhHHHHHHH
Q 020255 28 SSVSDAVGGTLKIVSK 43 (328)
Q Consensus 28 sDv~~~lsGalk~l~K 43 (328)
||+ ..+|-++|-+.=
T Consensus 17 sDv-E~iSkalQr~aL 31 (290)
T COG4026 17 SDV-EVISKALQRLAL 31 (290)
T ss_pred chH-HHHHHHHHHhhh
Confidence 444 455666665543
No 278
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=45.95 E-value=3.9e+02 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq 165 (328)
+...++.+.+....+.++|..+++.+...+.+.
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555666666665555444
No 279
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=45.72 E-value=1.4e+02 Score=30.93 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=27.6
Q ss_pred HHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHhHhhhhhhHHH
Q 020255 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ--RQLSSKITSVDRDVNK 164 (328)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaK--rhLsqRId~vD~klDe 164 (328)
++|.=+-||-||++- .-..+.=...+.+|++....+....| +.|..+|.....+++.
T Consensus 43 aLgLGagg~~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 43 ALGLGAGGYYFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred HHHhchhHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333346677764 12233334445555555555555555 5555555444444444
No 280
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.62 E-value=1.3e+02 Score=27.93 Aligned_cols=57 Identities=12% Similarity=0.402 Sum_probs=26.4
Q ss_pred HHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHHHHH---HHHHHHHHHhhhchhhhhh
Q 020255 132 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEIS---QATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 132 svtKqLeqVs~----sLaaaKrhLsqRId~vD~klDeq~eis---~~i~~eV~~v~~dls~ig~ 188 (328)
.|-+.|+.+.. .+..++++|...|+.+..+++...+++ +.++++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 334456666666666666555544443 4455555555555555443
No 281
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.61 E-value=35 Score=28.96 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
|+.|-.+|..+..++.+..+-...++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999888888888899999999988876
No 282
>PF05802 EspB: Enterobacterial EspB protein
Probab=45.58 E-value=2.3e+02 Score=28.62 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
+.+.++..=+.+++.+++..++-++|-.--+++.+.++.+.+||...-+....|-..+..-..
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999877666666555544433
No 283
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.23 E-value=42 Score=35.41 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
++...++...++.+..+++.+......+|.||+.+|.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3346677777777777777777777777777775554
No 284
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=45.22 E-value=1.2e+02 Score=21.98 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=14.8
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
|...|.+++.=...|+.+|+.=..++..+|..++..
T Consensus 9 l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 44 (63)
T PF05739_consen 9 LEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHH
Confidence 333344444433444444444444444444444333
No 285
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.89 E-value=34 Score=34.23 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=13.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q 020255 182 RSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 182 dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.+......+..+.+-+..||+++-
T Consensus 166 ~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 166 AIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344456666666777777665
No 286
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=44.53 E-value=2.6e+02 Score=25.77 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.5
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
.+-|.-.|+.+.+....+-+...+....|..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888877653
No 287
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.41 E-value=24 Score=29.28 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=13.0
Q ss_pred HHHhhhheeeEEecCCCc
Q 020255 98 VVIVAVGYGYVWWKGWKL 115 (328)
Q Consensus 98 a~iGavGYgYmwWKGws~ 115 (328)
+++.++=++|.|||-|+.
T Consensus 11 ~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566678999998853
No 288
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=44.27 E-value=2.8e+02 Score=31.94 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=65.8
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---------hhHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---------GDEF 190 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i---------g~Dv 190 (328)
|.+.+...+=+.++.+||+.|+..=-+-=..+++|-.. +..+-...+..+...+||.+++.++..+ |+.+
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~-e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~ 813 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELK-EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTV 813 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 56888888899999999997421100000011111111 1111111112222223333333333322 3445
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCccceecc
Q 020255 191 QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQAS 240 (328)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~ 240 (328)
..++++-..|=.+|.++--+=--.-.++..|-+.++..+..+.|..+|--
T Consensus 814 a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A 863 (984)
T COG4717 814 AELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEA 863 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 56666777777777777766666777778888888888888888877653
No 289
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=44.14 E-value=1.1e+02 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
.++..+...|+++-......=.++++||++-..+|+...+=+...+..|..+++-
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556666667777777777777777777777777776666666666666666553
No 290
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=44.08 E-value=1.7e+02 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 020255 191 QSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
..+...|..++.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554
No 291
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=43.91 E-value=53 Score=31.42 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=47.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH--------HHHHHhhhhhhhhhHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--------SKLIEIEGKQDITTLGV 218 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le--------~Ki~~ie~kQd~Tn~GV 218 (328)
|-.+|.++|+.|...+..|..++..|.+.|-+++- ..++.-|..++ .+-..++...-.||.-+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv---------~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDL 75 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV---------KKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDL 75 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccccccCcCCCccccccccchhH
Confidence 45788899999999999999999999999877763 44454555555 44456666666677644
Q ss_pred HHH
Q 020255 219 KKL 221 (328)
Q Consensus 219 ~~L 221 (328)
--|
T Consensus 76 VQL 78 (216)
T PF07957_consen 76 VQL 78 (216)
T ss_pred HHH
Confidence 444
No 292
>PRK11519 tyrosine kinase; Provisional
Probab=43.87 E-value=4.3e+02 Score=28.69 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLS 152 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLs 152 (328)
..++.+=+.+||+++...|..+.+.|.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777766655554
No 293
>PRK04098 sec-independent translocase; Provisional
Probab=43.70 E-value=2.5e+02 Score=25.72 Aligned_cols=51 Identities=10% Similarity=0.366 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQAT 172 (328)
Q Consensus 122 TKRnMsnAvasvtKq--LeqVs~sLaaaKrhLsqRId~vD~--klDeq~eis~~i 172 (328)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++....
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~ 93 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhh
Confidence 345555554444442 344455556667777777777766 455555554333
No 294
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.66 E-value=3.1e+02 Score=26.49 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqR 154 (328)
..|++..+.++..+++.+.+|...++|+.++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999998773
No 295
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=43.62 E-value=3.1e+02 Score=26.39 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH-HHHHhhhchhhhhhHHHHHHHH----HHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE-EVTILRGRSKLIGDEFQSVRDI----VQT 199 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~-eV~~v~~dls~ig~Dv~~v~~~----V~~ 199 (328)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+.........+ |-..++..|.++.+++..|++- |.-
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~R 90 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVER 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888776 455667777777765544444433 3446777899999999888754 555
Q ss_pred HHHHH
Q 020255 200 LESKL 204 (328)
Q Consensus 200 Le~Ki 204 (328)
||.|+
T Consensus 91 lE~KV 95 (219)
T PF06730_consen 91 LEAKV 95 (219)
T ss_pred HHHHh
Confidence 55555
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.48 E-value=62 Score=32.04 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
|-.=|.-|...||.|-++|+++.|.-.+.+.+..+-..+++.....++.++.-+.-|-..|
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345788999999999999999999999999987666666666655555555554444444
No 297
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.44 E-value=1.1e+02 Score=31.26 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=45.0
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhH-HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~---ig~D-v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
.+|-.+|.+.-+...-....+.+-+.+...+.. -+.| .+.+..-+..|..+|..+|.+..-...-+..++.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444445555554444444433 2345 6777778888888999999888887777777654
No 298
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=43.38 E-value=2.4e+02 Score=30.32 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH----------HH------HHHHHhhhchhhh
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA----------TQ------EEVTILRGRSKLI 186 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~----------i~------~eV~~v~~dls~i 186 (328)
+|-.-.-+..+-+-|+.+++.+.. ......+|.++|+.+|...+-.+. .+ .+.-+.-.|+|+|
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~I 415 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHI 415 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHH
Confidence 444445566677778888888887 777788888888888876654332 11 1244556677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
|+-++++ +.-.+. .++.+-.++-.|..-||++..
T Consensus 416 gDiie~l---~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 416 GDIIERL---LELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHH---HHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 7766663 232333 355677888888888887654
No 299
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=43.36 E-value=3.5e+02 Score=27.31 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=31.5
Q ss_pred hhhhhhH---HHHHHHHHHhHHHHHHHHHHHHHHHH--------------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 120 FATRRSL---SDACNSVARQLEDVYSSISAAQRQLS--------------SKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 120 fVTKRnM---snAvasvtKqLeqVs~sLaaaKrhLs--------------qRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
|-|..+| .+..+.+.+.+.++.+.|..+.+... ..|..|-.++.+.++-++.++.-|.++=.|
T Consensus 14 fp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~d 93 (383)
T PF04100_consen 14 FPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRD 93 (383)
T ss_pred CCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33455555556666666665554332 234444444444444444444444444444
Q ss_pred hh
Q 020255 183 SK 184 (328)
Q Consensus 183 ls 184 (328)
++
T Consensus 94 Ik 95 (383)
T PF04100_consen 94 IK 95 (383)
T ss_pred HH
Confidence 33
No 300
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.03 E-value=1.6e+02 Score=26.68 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=41.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (328)
++...|+.++.+|.....+...+-+.-.++-.|+..+|.=+..+=..=.+|+..|..+-..-+.+..+..
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~ 87 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALE 87 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888777777777777777777777666655554433333344444444433333333333
No 301
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=43.03 E-value=8 Score=33.31 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (328)
..+++.+..++++..+-...+..+|.+...+++++...+..+...|..|+..+..+..++..-..-
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~ 81 (138)
T PF06009_consen 16 LDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENL 81 (138)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777888888888888888888888888888888888888888876544433
No 302
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.00 E-value=3.4e+02 Score=26.79 Aligned_cols=85 Identities=7% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
-+.++++.-..+...-+++.++-+.+++-+++.......+.+-+.+.|..+-..-.++..+..+...-...+.++-....
T Consensus 216 ~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 216 ASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 34445555555666666777777777777777777777777777777776655555555555555444444444444333
Q ss_pred hhhHH
Q 020255 213 ITTLG 217 (328)
Q Consensus 213 ~Tn~G 217 (328)
.....
T Consensus 296 ~~~~~ 300 (359)
T COG1463 296 TYAAN 300 (359)
T ss_pred hhhhh
Confidence 33333
No 303
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.63 E-value=2.8e+02 Score=25.59 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhh--hhhHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKL--IGDEFQSVRDIV 197 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~--dls~--ig~Dv~~v~~~V 197 (328)
-|......++.+.+++++....+.. |..+|..+..++++.+.-...+.-.+..++. .+.. -+.|+.+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666667777777777766655554 4455566666666655443322222211111 1111 135666777777
Q ss_pred HHHHHHHHHhhhhhhhh
Q 020255 198 QTLESKLIEIEGKQDIT 214 (328)
Q Consensus 198 ~~Le~Ki~~ie~kQd~T 214 (328)
.-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888765543
No 304
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.46 E-value=1.8e+02 Score=23.45 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---hhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i---g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
.-.+|-.+|.+.-+...-....+.+-+.+...+... |.|.+.+..-+..|-.+|..+|....-...-+..+|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444444444444444443333 2467777777777777777777777766666666653
No 305
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.42 E-value=4.1e+02 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=22.5
Q ss_pred ccCCCCCCC-CCCCCCCCCCCCCCCCccchhhccc
Q 020255 260 QSGSLHPLP-LEPPSPSXXXXXXXIPMDLIRLTGR 293 (328)
Q Consensus 260 ~~slpp~~~-~e~~sps~~~~~~~~~~~~~~~~~~ 293 (328)
.++++.... ..-.+-.+..|....||-+|+|-|.
T Consensus 216 ~sGL~~~~~y~~Q~~~~~~~g~~~rPDviV~LP~~ 250 (475)
T PRK10361 216 ASGLREGYEYETQVSIENDARSRMQPDVIVRLPQG 250 (475)
T ss_pred HhCCCcCCcceeeeeccCCCCCeeCCeEEEECCCC
Confidence 345665543 2333455667778899999999875
No 306
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.39 E-value=1.8e+02 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRI 155 (328)
..|-.+...+++-+.++-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888889888888888888888776554
No 307
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.26 E-value=1.5e+02 Score=25.81 Aligned_cols=47 Identities=19% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 165 q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
..+-....++|+......++.....+++++.-+..++..+.+.+.+-
T Consensus 39 ~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 39 NLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333444455555555555556667777777777777777766653
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.22 E-value=1.9e+02 Score=28.37 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
++.++..=-.+|+.|..--..=..|-..+. +--++.++-+.+++-+..++..++++...+.++..=...||.||..
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~-r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALA-RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555433222222333333 3334566888888888888888888888888888888888888863
No 309
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=42.11 E-value=98 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=18.0
Q ss_pred hhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 180 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.++|.++-.-++.+...+.-||.||++|.
T Consensus 20 E~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 20 EEKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444445555666666677777777776
No 310
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.92 E-value=1.1e+02 Score=30.73 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=11.2
Q ss_pred eeccccccccccccCCCCCCC
Q 020255 237 VQASRYTLSRTTLELPGITPS 257 (328)
Q Consensus 237 ~Q~~~s~s~~pale~~~~~p~ 257 (328)
.++..+..++|.-..+-++|.
T Consensus 200 p~~p~~~p~ip~wqi~~~sp~ 220 (300)
T KOG2629|consen 200 PVAPSSAPSIPSWQIQAESPH 220 (300)
T ss_pred CCCcccCCCCchhhhccccch
Confidence 344445555666655555554
No 311
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=41.60 E-value=3.4e+02 Score=26.31 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=60.7
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------------HHhhhch
Q 020255 117 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEV------------TILRGRS 183 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvtKqLeqVs~sLaa-aKrhLsqRId~vD~klDeq~eis~~i~~eV------------~~v~~dl 183 (328)
.+|+..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.........++-+ .+.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 466677788999999999999999976655 444577777777776655444443333322 2334445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
..+.+|+.++..++..+..++..+-
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777776554
No 312
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=41.60 E-value=2.8e+02 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 020255 185 LIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
...++++.++..-..|..+|.+
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666665554
No 313
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.32 E-value=2.6e+02 Score=28.25 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=9.0
Q ss_pred CcccceeeccCCC
Q 020255 14 AGILTSVLAKEGR 26 (328)
Q Consensus 14 AG~~GSVl~knGk 26 (328)
+|++..|.+++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 3677777777774
No 314
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=41.16 E-value=2.1e+02 Score=24.43 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 174 (328)
.+..-+++..|..+...|..-.+||..-|-.=-..|-.+..-.+..++
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~ 72 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES 72 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH
Confidence 334445566666666666666665555554433333333333333333
No 315
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.01 E-value=1.9e+02 Score=26.09 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555677777776666
No 316
>PLN02320 seryl-tRNA synthetase
Probab=41.01 E-value=1.5e+02 Score=31.50 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=47.8
Q ss_pred ecCCCcCchhhhhhhhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 110 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 110 WKGws~SDlMfVTKRnMsnAvasvtKq-----LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
||-. -|+=|. |.|-.....++.+- +|++- .+-..+|.+..+++.+. .+.++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr---~ern~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLR---AERNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh--hCCCCHH
Confidence 6654 565554 44555444444432 34432 23444556666665554 4566677777652 2224445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.+..++..+++-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555655555555555555543
No 317
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.81 E-value=1.6e+02 Score=31.84 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=74.7
Q ss_pred EecCCCcCch--hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH---------------
Q 020255 109 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA--------------- 171 (328)
Q Consensus 109 wWKGws~SDl--MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~--------------- 171 (328)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-+++.+...+++.|.+++.+-+-+...
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~ 440 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDS 440 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCC
Confidence 4578888885 88888889999999999999999999999999999999999888775543322
Q ss_pred ------------------------------HHHHHHH-------hhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 172 ------------------------------TQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 172 ------------------------------i~~eV~~-------v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
|+.++++ +.+++.+...|+..+++..+++|.+|.+.
T Consensus 441 ~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 441 SLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred ceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 1122221 45666677777777777777777777654
No 318
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=40.76 E-value=2.8e+02 Score=28.18 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
.+++...+++=..|.+=++--..|.+|..+
T Consensus 202 ~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 202 HSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555555555544
No 319
>PHA03395 p10 fibrous body protein; Provisional
Probab=40.71 E-value=79 Score=26.43 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=3.7
Q ss_pred HhhhhhhHH
Q 020255 155 ITSVDRDVN 163 (328)
Q Consensus 155 Id~vD~klD 163 (328)
|..||+|+|
T Consensus 13 Ikavd~KVd 21 (87)
T PHA03395 13 IKAVSDKVD 21 (87)
T ss_pred HHHHhhHHH
Confidence 334444444
No 320
>PRK09039 hypothetical protein; Validated
Probab=40.68 E-value=3.8e+02 Score=26.67 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=13.0
Q ss_pred hhhcccccccccccccchhhcccc
Q 020255 288 IRLTGRIVSRPLASRSSMELQNWG 311 (328)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~ 311 (328)
|++.|.-=.+|+....+ .-.||-
T Consensus 265 I~I~GHTD~~p~~~~g~-~~~N~~ 287 (343)
T PRK09039 265 LRVDGHTDNVPLSGTGR-FRDNWE 287 (343)
T ss_pred EEEEEecCCCCccCCCC-cccHHH
Confidence 67777777777654222 234553
No 321
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.64 E-value=5e+02 Score=27.97 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|..|+..|++++++.
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888877665
No 322
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=40.62 E-value=2.2e+02 Score=31.16 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=62.6
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (328)
|+.|.+.|++|...+.++..-.+.+..|+......++++-+++.+.++----|+..=...+..+..-.+=...|+.+++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999988888899989999988877777766666666555555555555555543
No 323
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.44 E-value=3.8e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=58.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH------HHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI------VQTL 200 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~------V~~L 200 (328)
.+++.+|+-.|--+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..++.. +..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678889999999999999999999988877666655443 344455666777777777888877754 6677
Q ss_pred HHHHHHhhhh
Q 020255 201 ESKLIEIEGK 210 (328)
Q Consensus 201 e~Ki~~ie~k 210 (328)
|..|.+.|..
T Consensus 171 eqELvraEae 180 (271)
T PF13805_consen 171 EQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776644
No 324
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=40.37 E-value=3.9e+02 Score=26.99 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|..|+..+++++.+.
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887777765
No 325
>PRK11677 hypothetical protein; Provisional
Probab=40.30 E-value=1.4e+02 Score=26.45 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
.++...|..+|.+|.+-=+.|.+..++..++-..+.++=.++
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666667777778888877776665433
No 326
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.28 E-value=3.9e+02 Score=27.63 Aligned_cols=81 Identities=9% Similarity=0.217 Sum_probs=44.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-----------HHHHHHHHHHHHHhhhchhhhhhH-------
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-----------VEISQATQEEVTILRGRSKLIGDE------- 189 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-----------~eis~~i~~eV~~v~~dls~ig~D------- 189 (328)
+.+..+-+...++.+++.+-|.++...+.-+-..|.|- ++..+.=++|+..++.+|..+.+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33555555566666666666665554443333333222 233444455666666666444432
Q ss_pred -HHHHHHHHHHHHHHHHHhh
Q 020255 190 -FQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 190 -v~~v~~~V~~Le~Ki~~ie 208 (328)
...|++.++..-.||..||
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 3346667777777888888
No 327
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.21 E-value=1.5e+02 Score=35.29 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
++|+..+++..||. |+.+..+|-+..+-...|.+++.-...||+.+..|+..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~----l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQ----LQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555554444 334445555555555566677777777888888888888888888888887664
No 328
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.04 E-value=2e+02 Score=28.44 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHh
Q 020255 215 TLGVKKLCDRARE 227 (328)
Q Consensus 215 n~GV~~LC~f~~~ 227 (328)
+..+..||.+..-
T Consensus 267 ~~~l~~l~~~~~~ 279 (359)
T COG1463 267 NQALANLRPLATL 279 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555443
No 329
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=39.99 E-value=5.2e+02 Score=29.83 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHH---------------------------------------------------
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTI--------------------------------------------------- 178 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~--------------------------------------------------- 178 (328)
+|++|++++...+|+..++=....+-|.+
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q ss_pred ---hhhchhhhhhHH------HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCccceeccccccccccc
Q 020255 179 ---LRGRSKLIGDEF------QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTL 249 (328)
Q Consensus 179 ---v~~dls~ig~Dv------~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~~pal 249 (328)
..-|++.+-+++ +.+.+-...++.|++.-...-.-+.+-....- -+-..++-..|+.+|.+-.|.+
T Consensus 449 r~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e-----~Ki~~l~ae~~al~s~~~~~~~ 523 (1102)
T KOG1924|consen 449 RFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHE-----EKIKLLEAEKQALSSPSQLLPI 523 (1102)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-----hhcccCchhhhhccCcccCCCC
Q ss_pred cCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCC
Q 020255 250 ELPGITPSSRQSGSLHPLPLEPPSPSXXXXXXXIP 284 (328)
Q Consensus 250 e~~~~~p~sr~~slpp~~~~e~~sps~~~~~~~~~ 284 (328)
-....-|..-..-=-+..||.||.|.-|+|+---|
T Consensus 524 ~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PP 558 (1102)
T KOG1924|consen 524 DGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPP 558 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 330
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=39.95 E-value=19 Score=28.96 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
+=|.||+..+. .++.+-++--+.|.+.-++|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45788877664 355555566666777778899999999887764
No 331
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=39.91 E-value=1.9e+02 Score=29.17 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 020255 187 GDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
++||+.+|+.+..||.++.+++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 332
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=39.89 E-value=3e+02 Score=29.12 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
..||+..+-+|+|+.-.. ++..||++-...++...-|-+..++.
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n~ 160 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQNN 160 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999986543 88899999999988887777766653
No 333
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.86 E-value=4.6e+02 Score=27.36 Aligned_cols=66 Identities=8% Similarity=0.204 Sum_probs=42.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD-~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|==+.. .+|+.+..-......++.+++.-+..
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999988733332 22333333333444444444444433
No 334
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=39.76 E-value=1.5e+02 Score=28.01 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=39.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~--dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
|-..|.++..|+...+.....+..|+.++.. .+++++.++++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555555555555555554 3467788888888888888888887754
No 335
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.55 E-value=5.4e+02 Score=32.02 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=18.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhHhhhhhhHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKITSVDRDVN 163 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~---sLaaaKrhLsqRId~vD~klD 163 (328)
++.-|-.+..=+..+..+++...+ .+...++.+.+.++.+.+.++
T Consensus 899 ~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~ 946 (1930)
T KOG0161|consen 899 LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLE 946 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 333334444444444443333
No 336
>PRK15396 murein lipoprotein; Provisional
Probab=39.53 E-value=92 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=17.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 186 (328)
|+..++.|..|+|+...-...++.++..++++-.+-
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555555555554444443333
No 337
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.36 E-value=96 Score=27.20 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHHHHHhhhchhhhhh
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~kl--Deq~eis~~i~~eV~~v~~dls~ig~ 188 (328)
.|..-+..+..++..+... -++|...+..+...+ ++..+...+.++|+..+...|..+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~----~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKE----VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455444444333 344445555555544 56666666666777666666666554
No 338
>PLN03223 Polycystin cation channel protein; Provisional
Probab=39.33 E-value=1.5e+02 Score=35.57 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=59.6
Q ss_pred hhhhHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 122 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 122 TKRnMs--nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
.||.|. ||-+.++.-|+||. .|+-++..|...|+.|.-++|-++.+.+.=..+=+ - ..-|..-...|+.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~--~--~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS--L--ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch--H--HHHHHhchhHHHhHHHH
Confidence 366665 67777777777775 47788888999999888888777666554333210 0 11222223445555567
Q ss_pred HHHHHHHhhhhhhhhhHH
Q 020255 200 LESKLIEIEGKQDITTLG 217 (328)
Q Consensus 200 Le~Ki~~ie~kQd~Tn~G 217 (328)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 889999999998876543
No 339
>PRK01156 chromosome segregation protein; Provisional
Probab=39.29 E-value=3.3e+02 Score=29.82 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhh
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDR 160 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~ 160 (328)
.+++.++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544443
No 340
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=39.17 E-value=3.2e+02 Score=30.67 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHH-------HHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEI-------SQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrh---LsqRId~vD~klDeq~ei-------s~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
+.+.-..+-.|++-+-++|.+...| |..=++.+--+||+-... ...+++|.+..+..++.+.+-++.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566678888888888877654 444455555555544444 444444444444444444444444333
Q ss_pred HHHHHHHHHHHh
Q 020255 196 IVQTLESKLIEI 207 (328)
Q Consensus 196 ~V~~Le~Ki~~i 207 (328)
-|..|-.||+.+
T Consensus 393 ki~~Lq~kie~L 404 (775)
T PF10174_consen 393 KINVLQKKIENL 404 (775)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 341
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=39.11 E-value=3e+02 Score=27.34 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCCCCC-------CCCCCccchhhccccccccc
Q 020255 263 SLHPLPLEPPSPSXXXX-------XXXIPMDLIRLTGRIVSRPL 299 (328)
Q Consensus 263 lpp~~~~e~~sps~~~~-------~~~~~~~~~~~~~~~~~~~~ 299 (328)
||+-.+--|.-+--+=| +..||||. +||-.|--|
T Consensus 166 LP~yqa~HPt~rCRtYGti~fnG~~l~iPMDi---~GRpaSTaL 206 (271)
T PF05549_consen 166 LPPYQAVHPTARCRTYGTIEFNGSSLRIPMDI---RGRPASTAL 206 (271)
T ss_pred CCcccccCCCcccccceeEEECCEeeeccccc---cCCCCcceE
Confidence 66555544444433322 46899996 477666544
No 342
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.05 E-value=4.1e+02 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
++...+..++++..-...++.++.+++.+..
T Consensus 142 ~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 142 ELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555554444
No 343
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=39.02 E-value=1.4e+02 Score=28.05 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhchhhhhhH
Q 020255 171 ATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~D 189 (328)
.++.+|+.++.|+.....-
T Consensus 111 ~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred hHHhHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 344
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.01 E-value=4.7e+02 Score=30.81 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 169 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
.++++.++.+++..+.....++.....-...++.++...+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777776666666666665554
No 345
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=39.00 E-value=1.1e+02 Score=26.36 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020255 190 FQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (328)
++.++++-..|+.+++.++
T Consensus 94 i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 94 EARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444344444444443
No 346
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=38.96 E-value=1.4e+02 Score=28.40 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=35.9
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~-i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-.. -.+|...+.+-|...-.++++++.+
T Consensus 49 ~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~ 125 (219)
T cd07621 49 KMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDL 125 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655422 13333333333333333332222 2234444555555555555555433
No 347
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.82 E-value=2.1e+02 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
+.+..++..-+.++++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888877764
No 348
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=38.69 E-value=31 Score=23.98 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred eeeEEecCCCcCchhhhhhhhHHHH
Q 020255 105 YGYVWWKGWKLPDMMFATRRSLSDA 129 (328)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnMsnA 129 (328)
.-++.|+|++-.|-.+++..+|.++
T Consensus 21 ~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 21 EYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEEECCCCCccCccccHHHhCch
Confidence 3478999999999999999999876
No 349
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.65 E-value=3.2e+02 Score=25.24 Aligned_cols=15 Identities=7% Similarity=0.395 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
++----.|..+|+.+
T Consensus 48 lm~~f~~l~e~v~~l 62 (190)
T PF05266_consen 48 LMVTFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555566666777666
No 350
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.44 E-value=84 Score=24.21 Aligned_cols=11 Identities=9% Similarity=0.540 Sum_probs=4.2
Q ss_pred HhHhhhhhhHH
Q 020255 153 SKITSVDRDVN 163 (328)
Q Consensus 153 qRId~vD~klD 163 (328)
.++.+++..++
T Consensus 7 n~~~~~~~~i~ 17 (55)
T PF05377_consen 7 NELPRIESSIN 17 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 351
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.34 E-value=42 Score=30.73 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCC
Q 020255 253 GITPSSRQSGSLHPLPLEPPSPSXXXX 279 (328)
Q Consensus 253 ~~~p~sr~~slpp~~~~e~~sps~~~~ 279 (328)
+.||+.|...-....-..||||..+..
T Consensus 95 plTP~~r~s~klas~~~~~~s~~~s~~ 121 (166)
T PF04880_consen 95 PLTPPARISAKLASNFAKPPSPPMSET 121 (166)
T ss_dssp ---------------------------
T ss_pred CCCCCchhhHHHHHhccCCCCCCcccc
Confidence 446665543311113355566554433
No 352
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=38.24 E-value=1.4e+02 Score=32.88 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
..++.+..+-.+++.|..+-.++.+=.++-+.|++.|..|+..++.--..+.-
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~ 124 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQL 124 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 34568889999999999999999999999999999999999999966544433
No 353
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=38.23 E-value=4.1e+02 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSIS 145 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLa 145 (328)
...++..+.+++.+|+++..+-
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if 163 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIM 163 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3456666666777777766664
No 354
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=38.16 E-value=1.7e+02 Score=31.39 Aligned_cols=66 Identities=24% Similarity=0.296 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
++++..|+++....-+.|-..|.+.++..+-......||.++-.-++.+..++..+++-+..+|.+
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~q 73 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQ 73 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555556666666666666666666666666666666666666665555544444444
No 355
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=38.15 E-value=3e+02 Score=24.71 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
-.|+.+.+-+..+.+.|+.+.+++..-..++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 3567777777888888888888887777777788888888777765
No 356
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=38.09 E-value=90 Score=31.99 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=60.7
Q ss_pred CCCCCC--chhHHHHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 020255 86 GSGTGA--KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (328)
Q Consensus 86 ssg~gg--~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klD 163 (328)
++|... -.+.+++++|+-||.|.+..--.. -.+...+.+-.+....+..+-...+...-+++..++..+..++.
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~~~qq~~~~----~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~ 109 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYHGKQQAQNQ----TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQA 109 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346543 377887799999999999877433 34666677777777666666666666666666667777666666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020255 164 KIVEISQATQEEVTILR 180 (328)
Q Consensus 164 eq~eis~~i~~eV~~v~ 180 (328)
+...-....+..+.++.
T Consensus 110 ~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 110 ALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66666666666665543
No 357
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.05 E-value=2.5e+02 Score=28.31 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=71.1
Q ss_pred hhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------------------------------HHH
Q 020255 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 169 (328)
Q Consensus 123 KRnMs-nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~--------------------------------eis 169 (328)
++++. |+...++.+|.+.+...+...-..-.||.+-+.+-.+-. +..
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45555 788889999999999999888777777766544322211 222
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh----HHHHHHHHH
Q 020255 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT----LGVKKLCDR 224 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn----~GV~~LC~f 224 (328)
..=.+||+.+..-+.....-++.+..+|-.=+.=||+|.+|-+-|+ .|..-|-..
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 2333567777777777777788888888888888999988855544 566666543
No 358
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.84 E-value=3.3e+02 Score=27.47 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 159 DRDVNKIVEISQATQEEV-------TILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 159 D~klDeq~eis~~i~~eV-------~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
|..+++.+-.-..+++|= -|++.-|+.-+.+|++++++|+++-..|..=
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 344444444444444441 2566778899999999999999988877643
No 359
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.81 E-value=3.4e+02 Score=25.21 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD 159 (328)
..-.|+.+.+.+..+.|.+...+..|..+|+.--++=..++
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999988776644443
No 360
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.68 E-value=2.5e+02 Score=27.63 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.0
Q ss_pred hhhheeeEE
Q 020255 101 VAVGYGYVW 109 (328)
Q Consensus 101 GavGYgYmw 109 (328)
.|+|+.|.|
T Consensus 194 ~Aa~~Lc~W 202 (344)
T PF12777_consen 194 KAAGSLCKW 202 (344)
T ss_dssp TTHHHHHHH
T ss_pred hcchHHHHH
Confidence 344444444
No 361
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=37.63 E-value=4e+02 Score=26.03 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 143 SISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~k----lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.|.....++.+.|+.+..+ +-+..+....+.+++..+...++++..++.++.........+...+..+
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 2333555555666666666666666666666655555555554444333
No 362
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.59 E-value=2.1e+02 Score=26.35 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=47.2
Q ss_pred CcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHH
Q 020255 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 114 s~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ei-s~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
||.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++..+.|+.-
T Consensus 62 ~~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 62 KVKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred cccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 355555555666666666553 344444455555555666666666666666665 666666666666666666666554
Q ss_pred HH
Q 020255 193 VR 194 (328)
Q Consensus 193 v~ 194 (328)
+.
T Consensus 141 l~ 142 (157)
T COG3352 141 LY 142 (157)
T ss_pred hc
Confidence 43
No 363
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=37.54 E-value=2.8e+02 Score=24.28 Aligned_cols=84 Identities=13% Similarity=0.291 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc--hhhhhhHHHH----HHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQS----VRDIV 197 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d--ls~ig~Dv~~----v~~~V 197 (328)
.++.+=.+++..+++++-..=.+-+....++-+..+..|+++.+....+.+....+..+ +.-++++.+. .....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 56666677888888888777778888999999999999999999999999887776654 3444445444 34455
Q ss_pred HHHHHHHHHh
Q 020255 198 QTLESKLIEI 207 (328)
Q Consensus 198 ~~Le~Ki~~i 207 (328)
..||.+|..-
T Consensus 103 ~~L~k~I~~~ 112 (126)
T PF09403_consen 103 NKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 364
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.49 E-value=70 Score=32.13 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
+|+..=|..++.+.+.+++++....++..+..|.+
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666655555554444333
No 365
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.39 E-value=2.3e+02 Score=31.25 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
.+.+..-..+..+=+.|.-.+.+|+..+++++......++++..++..+. .++.++.....-+..|+-+|.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 366
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.30 E-value=1.6e+02 Score=26.76 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
--++|..|=|.|...|....++.+.-.+=++.+.-=++-+.+|+..|.
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334555555555555555555555444444444444444444454444
No 367
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.28 E-value=1.1e+02 Score=29.52 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
.+=.-|.+.|..+.+|...|...+.++.+.....+.||..++.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999999999998887775
No 368
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=1.2e+02 Score=26.49 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~ 173 (328)
-|.+|.+.==|-+.||-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4677777777778888888887778888888888777777776666554
No 369
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.11 E-value=4e+02 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=10.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRS 183 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dl 183 (328)
+..+.+.|.+..+..+.++++...+++.+
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 370
>COG3910 Predicted ATPase [General function prediction only]
Probab=37.11 E-value=43 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC--CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecCCC
Q 020255 64 EVSSVQQELSHV--PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWK 114 (328)
Q Consensus 64 QV~~LaqElr~L--sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws 114 (328)
-++.|+. .| .-|||++.|. .|+ .+.+++=+| |+||+|=---|-+
T Consensus 25 a~r~l~~---~LeF~apIT~i~GE-NGs--GKSTLLEai-A~~~~~n~aGg~~ 70 (233)
T COG3910 25 AFRHLEE---RLEFRAPITFITGE-NGS--GKSTLLEAI-AAGMGFNAAGGGK 70 (233)
T ss_pred HHHhhhh---hccccCceEEEEcC-CCc--cHHHHHHHH-HhhccccccCCCc
Confidence 4777776 45 7799999998 333 366665444 6677776655554
No 371
>PHA00276 phage lambda Rz-like lysis protein
Probab=36.96 E-value=1.6e+02 Score=26.78 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 161 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
.+.+..+++...++|+..++.....+..|+.
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlR 80 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLR 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4677778888888888777776555555543
No 372
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=36.87 E-value=1.7e+02 Score=21.58 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 161 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
.|..|.|..+.+.+.+ ..|...+...+.++..++
T Consensus 30 ~L~~Qre~L~~~~~kl-------~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 30 DLRSQREQLKRVRDKL-------DDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHH
Confidence 3444444444444444 334444555554444443
No 373
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.66 E-value=3.4e+02 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=21.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
.+...++....+++...+-.+..++++...+..+......++.-+.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444443
No 374
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=36.64 E-value=3e+02 Score=24.34 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 183 (328)
+.+.|....+.+..||+.+...|++...-+..+.+-|..++.-+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~ 66 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSL 66 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56778889999999999999999998888888877777666543
No 375
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.47 E-value=1.5e+02 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq 153 (328)
-|+++=++++.+.+|+.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777778888888888887777777776654
No 376
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.45 E-value=3.4e+02 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.4
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKr 149 (328)
-++-.-..+.+-++.+-+.++.+.+.|..+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777888888888888888888877753
No 377
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.21 E-value=4.1e+02 Score=28.99 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=56.1
Q ss_pred hheeeEEecCCCcCchhhhhhh--hHHHH-------------------HHHHHHhHHHHHHHHH---HHHHHHHHhHhhh
Q 020255 103 VGYGYVWWKGWKLPDMMFATRR--SLSDA-------------------CNSVARQLEDVYSSIS---AAQRQLSSKITSV 158 (328)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKR--nMsnA-------------------vasvtKqLeqVs~sLa---aaKrhLsqRId~v 158 (328)
-||.=|-=+|..|.++ =+-+| +|.+. .+.+-..++++|+-+. +||+....+...+
T Consensus 236 ~Gyr~m~~~gY~l~~~-~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 236 AGYRDMKEEGYHLEHV-NIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHHHHHHHccCCcccc-cHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3788888999999983 22211 22222 2223345566666664 6899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 159 DRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 159 D~klDeq~eis~~i~~eV~~v~~d 182 (328)
-+.|+.+++....+++|+..|+..
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877654
No 378
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=36.13 E-value=3.3e+02 Score=30.10 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
+-+..+--..++|+.+|..+=.++.+||=++...++.+..=....++++..++++++....|-.
T Consensus 38 ~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 38 SLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 3333333456788888888888899999899999888888888888888888888777665543
No 379
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.12 E-value=5.7e+02 Score=30.85 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554444
No 380
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.07 E-value=3.2e+02 Score=30.22 Aligned_cols=80 Identities=13% Similarity=0.270 Sum_probs=62.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
||||..- +-+++=+..+..-.+=+++..|+++|+..+++++-....++.+.+....+...+-...+.++.--..||.
T Consensus 51 RRnLr~~---iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 51 RRNLRSD---IESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HhhhhhH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777654 4456666677777778889999999999999999999999999988888877777777777755555555
Q ss_pred HHH
Q 020255 203 KLI 205 (328)
Q Consensus 203 Ki~ 205 (328)
|..
T Consensus 128 r~k 130 (655)
T KOG3758|consen 128 RKK 130 (655)
T ss_pred HHH
Confidence 543
No 381
>PRK10807 paraquat-inducible protein B; Provisional
Probab=36.04 E-value=1.2e+02 Score=32.09 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhH
Q 020255 141 YSSISAAQRQLSSKITSVDRDV 162 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~kl 162 (328)
-+.+.++=+++.+-+++++..+
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l 459 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTL 459 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 382
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=36.03 E-value=1.1e+02 Score=23.41 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
+=|+|+++.....-..+..|||.+..++|+...
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 335555555555556666677766666665443
No 383
>PRK04654 sec-independent translocase; Provisional
Probab=36.01 E-value=3.3e+02 Score=26.19 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId 156 (328)
+.|=.+...+++-+.++-..+..+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788888888877777777777776553
No 384
>PRK12482 flagellar motor protein MotA; Provisional
Probab=35.98 E-value=2.1e+02 Score=28.22 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=68.0
Q ss_pred hHHHHHHhhhheeeEEecC-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHH
Q 020255 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (328)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~v---D~klDeq 165 (328)
.++++++|++.+||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4566778888888877555 56666776665544 345567889999999999999887766555 4778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 020255 166 VEISQATQEE-VTILRGRSKLIGD 188 (328)
Q Consensus 166 ~eis~~i~~e-V~~v~~dls~ig~ 188 (328)
.|+++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 9999888887 6666666666664
No 385
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=35.77 E-value=4.3e+02 Score=26.17 Aligned_cols=113 Identities=16% Similarity=0.280 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecCCCcCchhhhhhhhHHHHHHHHHHhHHH
Q 020255 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (328)
Q Consensus 61 L~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnMsnAvasvtKqLeq 139 (328)
++.|+..|+-|+.+. .+..-|+..+ . -++.++ .|..+. -+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n---~-----~VL~~l---------------------gkeelq----kl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN---P-----EVLLTL---------------------GKEELQ----KLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---H-----HHHHHH---------------------HHHHHH----HHHHHHHH
Confidence 888999999999998 6655566554 1 112222 244444 45567888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
|-..+.+=.++|..-+++-..=|+++++|-+.......+++.....+.+ +.++..|+.||..++.-+
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHH
Confidence 8888888888999889999999999999999988888888776555544 356678888888887543
No 386
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.73 E-value=3.9e+02 Score=30.86 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--------HHHhhhc---hhhhhhHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRGR---SKLIGDEFQSVRD 195 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e--------V~~v~~d---ls~ig~Dv~~v~~ 195 (328)
....+.+..++++..+.+...+.++..+++.++..+..++.-.+.+.++ +.++..+ +..+..+++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555554444333333322 2222222 2344555555666
Q ss_pred HHHHHHHHHHHhhhh
Q 020255 196 IVQTLESKLIEIEGK 210 (328)
Q Consensus 196 ~V~~Le~Ki~~ie~k 210 (328)
....|.+|...|+.+
T Consensus 367 ~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666644
No 387
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.70 E-value=4.2e+02 Score=29.52 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhL---sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
|.+.+-+..+.+.+.....++...|++- .++.+.+--++++....-++|+..+.+.+..++.+.+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777888888887777653 3444555555555555555555555444444443333333333333333
Q ss_pred HHHHHHh
Q 020255 201 ESKLIEI 207 (328)
Q Consensus 201 e~Ki~~i 207 (328)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 3444433
No 388
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=35.69 E-value=47 Score=35.70 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH--HhhhhhhhhhH
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI--EIEGKQDITTL 216 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~--~ie~kQd~Tn~ 216 (328)
+.+-.+. .=.-|.|.|+.|++.++++.+..+.=--.+...+.++..|..|..... ...|+-=+- ....+|++.-+
T Consensus 368 R~win~t-iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~~--~p~lp~llpfLd~~snqeYlvq 444 (602)
T KOG4670|consen 368 RLWINLT-ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQG--LPKLPWLLPFLDRSSNQEYLVQ 444 (602)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhcc--CCccchhhhhccCCccHHHHHH
Confidence 3443333 445688999999999998877766555556666666666655532211 111111111 34567999999
Q ss_pred HHHHHHH
Q 020255 217 GVKKLCD 223 (328)
Q Consensus 217 GV~~LC~ 223 (328)
-|+.||+
T Consensus 445 RIKeLaq 451 (602)
T KOG4670|consen 445 RIKELAQ 451 (602)
T ss_pred HHHHHhh
Confidence 9999997
No 389
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=35.56 E-value=1.2e+02 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVA 134 (328)
Q Consensus 121 VTKRnMsnAvasvt 134 (328)
+.+.|+.+.++..-
T Consensus 29 a~~~~v~~~~~~f~ 42 (113)
T PF02520_consen 29 AEKYGVQDQYNEFK 42 (113)
T ss_pred HHHCCcHHHHHHHH
Confidence 34444444433333
No 390
>PHA03395 p10 fibrous body protein; Provisional
Probab=35.41 E-value=1.5e+02 Score=24.88 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQ 148 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaK 148 (328)
.+|++.+..+++-++.++...+
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3455666666665555555554
No 391
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=35.38 E-value=1.3e+02 Score=31.67 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 020255 188 DEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
+|+..+-.+|..|+.+|++.-++-|.-..
T Consensus 317 ~~l~~le~~~~~mgPlid~~Le~idrk~~ 345 (462)
T KOG2199|consen 317 DDLLDLEAAVHQMGPLIDRKLEKIDRKHE 345 (462)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 45666666666666666666555444433
No 392
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.32 E-value=5.3e+02 Score=26.74 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHH-HHHHHHHHHHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVN-KIVEISQATQEE 175 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klD-eq~eis~~i~~e 175 (328)
.+......|...|++|..++. +...+.+..++|
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEE 256 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEE 256 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555666555332 444444444444
No 393
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=35.28 E-value=3.5e+02 Score=31.99 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=9.5
Q ss_pred cCchhhhhhhhHHHHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSV 133 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasv 133 (328)
.+|+-+..-.+.+-||..+
T Consensus 894 ~p~f~~~~v~~~s~a~~~l 912 (1395)
T KOG3595|consen 894 NPDFVPEKVNRASLACEGL 912 (1395)
T ss_pred CccCCHHHHHhhhhhhhhH
Confidence 3445555555555555544
No 394
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=35.20 E-value=2.5e+02 Score=26.27 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis 169 (328)
..|.+-+.+|...-+.++ ||.||+=+|+..|..
T Consensus 111 ~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~ 143 (191)
T PTZ00446 111 NALSYAANTHKKLNNEIN--TQKVEKIIDTIQENK 143 (191)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 344444444544444442 666666666555543
No 395
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=35.15 E-value=2.2e+02 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 020255 133 VARQLEDVYSSISAAQRQL 151 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhL 151 (328)
+-.++++|.+.+...=+.+
T Consensus 8 i~~~v~~v~~im~~Ni~~l 26 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKL 26 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444433333333
No 396
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.00 E-value=3.8e+02 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD 159 (328)
.+++.++..+..-++.+.+.|+.-|..+...|++.-
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~ 123 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELN 123 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456666666666666666666666666666666543
No 397
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.96 E-value=2.3e+02 Score=22.39 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 020255 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (328)
Q Consensus 159 D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (328)
..+|.+-.+.+.+..+|-..+...--....-|..++.-+..+|..+..+..+.+-...-+.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443344444444444444444444444433333333333
No 398
>PRK09343 prefoldin subunit beta; Provisional
Probab=34.93 E-value=96 Score=26.39 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=24.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
||| |....+|.+.|.+.+|-.. .||..++.+.+...+-.+..+++
T Consensus 63 vlv-~qd~~e~~~~l~~r~E~ie-----------~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 63 LLV-KVDKTKVEKELKERKELLE-----------LRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHh-hccHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 3477777777777766554 44444444444444433333333
No 399
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=34.83 E-value=2.2e+02 Score=22.25 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD 159 (328)
.++++.+.+..+|.-+..-|+.+=
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665553
No 400
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=34.82 E-value=3.8e+02 Score=24.94 Aligned_cols=71 Identities=18% Similarity=0.380 Sum_probs=32.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQL----------SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhL----------sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
.++.|.+--......|+++-..|..|+..+ ..|+..+...|+...+=.......+.++...+..++..+.
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555432 2333333333343334344444444444444444444443
Q ss_pred H
Q 020255 192 S 192 (328)
Q Consensus 192 ~ 192 (328)
+
T Consensus 159 ~ 159 (237)
T PF00261_consen 159 S 159 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 401
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.81 E-value=2.7e+02 Score=29.55 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+--+.|.+|-+++|.++++.. +.+=.++..+.++...+.+.++..+..|..+++.+-
T Consensus 87 ~eN~~L~~r~~~id~~i~~av------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 87 AENERLQKREQSIDQQIQQAV------QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHhhhhHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444455555554444332 222234444555556666666666666666665443
No 402
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=34.69 E-value=1e+02 Score=25.73 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 020255 193 VRDIVQTLESKLIEIE 208 (328)
Q Consensus 193 v~~~V~~Le~Ki~~ie 208 (328)
++.....+-.+|..|+
T Consensus 53 ~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 53 IKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 403
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.60 E-value=3.6e+02 Score=29.79 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=21.5
Q ss_pred hhhhhhhhHHHHHHHH----HHhHHHHHHHHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSV----ARQLEDVYSSISAAQRQL 151 (328)
Q Consensus 118 lMfVTKRnMsnAvasv----tKqLeqVs~sLaaaKrhL 151 (328)
.||+|.+.|...+... .+.++++..-+..+..|+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi 196 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQI 196 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4899998887777644 455555555555555544
No 404
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.45 E-value=1.3e+02 Score=29.85 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=30.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH-HHHHHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIE 206 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~-V~~Le~Ki~~ 206 (328)
+|.+|..-|.+-....-.-..++++++.| .+-..+++..|.+ |..|-.|+.+
T Consensus 233 eia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 233 EIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333345567777777 5555778888877 7777776654
No 405
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=34.45 E-value=98 Score=31.09 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=46.9
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------hh-hhhhHHHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------SK-LIGDEFQS 192 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d------ls-~ig~Dv~~ 192 (328)
|+.+--+.|-|..-++-+..++..+.-=...|..|++.+=..++++....+++.+.|..+++- |. .++.|++.
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qk 282 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQK 282 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 344445555555555555566666666666677777777777777777777777777766653 33 56666644
Q ss_pred HH
Q 020255 193 VR 194 (328)
Q Consensus 193 v~ 194 (328)
|+
T Consensus 283 L~ 284 (307)
T PF15112_consen 283 LD 284 (307)
T ss_pred HH
Confidence 44
No 406
>PLN02678 seryl-tRNA synthetase
Probab=34.34 E-value=3.9e+02 Score=27.94 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHH----HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 136 QLEDVYSSISAAQRQL----SSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 136 qLeqVs~sLaaaKrhL----sqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+.|.|-++|. ||.+ -.+|-.+|.+.-+...-.+..+.+-+.+...+. .-+.|.+.+..-+..|..+|..+|
T Consensus 14 ~~~~v~~~l~--~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 14 DPELIRESQR--RRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKE 91 (448)
T ss_pred CHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5555555554 2221 234444444433333333333333333333332 334566777777888888888888
Q ss_pred hhhhhhhHHHHHHHH
Q 020255 209 GKQDITTLGVKKLCD 223 (328)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (328)
...+....-+..++.
T Consensus 92 ~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 92 AEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776644
No 407
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.28 E-value=48 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred eeeEEecCCCcCchhhhhhhhHHH
Q 020255 105 YGYVWWKGWKLPDMMFATRRSLSD 128 (328)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnMsn 128 (328)
.-|+.|+|++-++--+++..++.+
T Consensus 19 ~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 19 EYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEEECCCCCccCceeeHHHHHH
Confidence 347899999999999999988886
No 408
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=34.26 E-value=2.6e+02 Score=28.12 Aligned_cols=47 Identities=32% Similarity=0.404 Sum_probs=30.2
Q ss_pred hhhhhhHHH----HHHHHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 120 FATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 120 fVTKRnMsn----AvasvtKqLeqVs~----sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=++
T Consensus 15 fAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIe 69 (302)
T PF05508_consen 15 FAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIE 69 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 566666553 45666666666544 577777888888877776555443
No 409
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=34.08 E-value=4e+02 Score=30.33 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh------hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSV------DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~v------D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
+...+......+.++...+...++++...+... ...+++..+.....+.+..+.+..+..+...+....
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 856 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDA 856 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555422222 123444444444444444444444444444433333
No 410
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.04 E-value=13 Score=28.54 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.9
Q ss_pred ceeeeEcCcccceeeccC
Q 020255 7 KLTFLVGAGILTSVLAKE 24 (328)
Q Consensus 7 Kv~ILvGAG~~GSVl~kn 24 (328)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999988854
No 411
>PLN02320 seryl-tRNA synthetase
Probab=33.98 E-value=1.5e+02 Score=31.56 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 192 SVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
.+..-+..|-.+|..+|........-+..+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433333333
No 412
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=33.95 E-value=1.2e+02 Score=30.89 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=8.0
Q ss_pred hhhHHHHHHHhhhc
Q 020255 34 VGGTLKIVSKLIKQ 47 (328)
Q Consensus 34 lsGalk~l~K~lk~ 47 (328)
|-+.|..+..++++
T Consensus 232 L~~~ltrL~~~~~~ 245 (370)
T PLN03094 232 LVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHhhh
Confidence 33666666665554
No 413
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.73 E-value=4e+02 Score=31.04 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=19.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+..+|..+-.+++...+..+.+..++.++...+..+......+
T Consensus 222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~ 264 (1311)
T TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333333
No 414
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.59 E-value=4.2e+02 Score=28.32 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+.-.+-++.+..++.....++.-+++++...+.+..|+.+.++++-..-+++++.+. +.....+...|.||..++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE---EREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344455556666666666677777777777777777777776666555555544432 223333444444444443
No 415
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.51 E-value=4.2e+02 Score=25.03 Aligned_cols=109 Identities=11% Similarity=0.206 Sum_probs=69.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhHHHH----H
Q 020255 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQS----V 193 (328)
Q Consensus 119 MfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis-~~i~~eV~~v~~dls~ig~Dv~~----v 193 (328)
++-.++.+.+.+..+-|.+-.-+..+..+|+.+-+|-...+....+...-- ..+.+++..++.+++.-.+++.. .
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y 177 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLY 177 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999988887655432211 11234455555544444333322 2
Q ss_pred HHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHh
Q 020255 194 RDIVQTLESKLIEIEGK-QDITTLGVKKLCDRARE 227 (328)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k-Qd~Tn~GV~~LC~f~~~ 227 (328)
..+-..++.++..+-.. |.+-..-|..|.+++.+
T Consensus 178 ~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 178 NQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555554433 66666666666666543
No 416
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.34 E-value=2.6e+02 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 142 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
..+.+...+|..||..++..+.+.....+.++||...++--+.....-+..++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777777777777777777777666665555444444443
No 417
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=33.34 E-value=4.2e+02 Score=24.95 Aligned_cols=96 Identities=15% Similarity=0.255 Sum_probs=45.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhH----hhhhhhHHHHHH----HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 134 ARQLEDVYSSISAAQRQLSSKI----TSVDRDVNKIVE----ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRI----d~vD~klDeq~e----is~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.+++|.+-+.+..+=.-|..|= +.+++-+.+..+ ....+.+=|..+...++. ...+..+..-|..+|...|
T Consensus 86 ~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-~~~~~~i~~eI~~~E~e~D 164 (217)
T COG1392 86 IESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-ADRLLEIIKEIEALEHECD 164 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhh
Confidence 3444555555554444444432 233333333322 223333333333333333 2233444444666677766
Q ss_pred Hhhhh-------hhhh--hHHHHHHHHHHHhhcc
Q 020255 206 EIEGK-------QDIT--TLGVKKLCDRARELEN 230 (328)
Q Consensus 206 ~ie~k-------Qd~T--n~GV~~LC~f~~~~~~ 230 (328)
.|+.+ -+.. -..++++|++++.+++
T Consensus 165 ~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 165 DIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 66643 2222 3677888888876543
No 418
>PF14182 YgaB: YgaB-like protein
Probab=33.23 E-value=2.8e+02 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHH-----HHHHhhhchhhhhhHHHHHHHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~-----eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
.-++=.|-..||-|.+|-++..+ +...++..+.+...+++.||.++.
T Consensus 13 MD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 13 MDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888877654 355666677777777777776654
No 419
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.22 E-value=1.3e+02 Score=22.34 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=15.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
++.+.|+.+..++++..+-.+..+.++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555455555555444
No 420
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=33.21 E-value=1.9e+02 Score=20.92 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
|+++...+.....+|...++.+...++.
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~ 36 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDS 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 421
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=66 Score=28.80 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHhhhheeeEEecCCCcCchh------hhhhhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhH
Q 020255 99 VIVAVGYGYVWWKGWKLPDMM------FATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDV 162 (328)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlM------fVTKRnMsnAvasvtKqLeqVs~sLaaaKr---hLsqRId~vD~kl 162 (328)
=+|+=.|.|.--++- .+++ |.-.++..+|.+.+-|..+....++..... .|++|++.+...+
T Consensus 61 pvGag~fv~~kv~~~--~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 61 PVGAGLFVKAKVKDM--DKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred EcCCCceEEEEeccC--ceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554443 2222 455789999999999999887766554332 3444444444433
No 422
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.17 E-value=6.7e+02 Score=31.10 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
++..-+.+|-.+....-.+-+++|+.+.+||+.|.+.+.+.+.= ..+++..+|.=......++..-+..|..++..
T Consensus 777 ~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~ 852 (1822)
T KOG4674|consen 777 SLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESE 852 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33344455555666667788999999999999998877665543 33333333333333333444444333333333
No 423
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.13 E-value=1.3e+02 Score=28.02 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=15.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
+++++++++.+++++...++.+.+.|.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555556666666666655555543
No 424
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.99 E-value=5.8e+02 Score=27.95 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=16.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs 141 (328)
++++|==+|+.+.+-.+++.++++..-
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~ 241 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLK 241 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777666666666555443
No 425
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=32.88 E-value=2.8e+02 Score=26.88 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhh-------HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 162 VNKIVEISQATQEEVTILRGRSKLIGD-------EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 162 lDeq~eis~~i~~eV~~v~~dls~ig~-------Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
+++..+-.+.+++.+..++..++.... -...+...+...+.++..++....-+..-...+|+|.+
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444444444444433332 46677888999999999999999999999999999983
No 426
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.85 E-value=3.5e+02 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++++..+-...+.+++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 194 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQI 194 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777777777777777777766666544444444444333444444
No 427
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=32.85 E-value=7.4 Score=36.49 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-ecCC--CcCchhhhhhhhHHHHHHHHHH
Q 020255 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 135 (328)
Q Consensus 62 ~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGw--s~SDlMfVTKRnMsnAvasvtK 135 (328)
.+=.++|+++|.+. ...+.|+=.++.|+. .-.+. -+++|+.|.-|+| |.|- -|-.-|-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr~-~r~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGRP-WRLGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEET-TEECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCcE-EecCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34578889999988 667766666633432 22333 3688999998988 7676 3566688999999998887664
No 428
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=32.75 E-value=1.9e+02 Score=29.46 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (328)
+-++.+...++....+=+.....+.+++++.-.+++.| ++.|+.+|+.-++ .+||.|=.. .+-++|.-|
T Consensus 200 ~Ss~V~~dQ~~~~~~~~~~~~e~~~~mk~~A~~~~~al--~~nd~~~f~~~l~------~gW~~KK~l---s~~ISN~~I 268 (333)
T COG2605 200 QSSEVIEDQVRNVVDGDEETLEALHEMKALAYEMKDAL--VRNDIPEFGQILD------RGWEAKKKL---SSRISNDAI 268 (333)
T ss_pred chhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHH------hHHHhhhhh---ccCcCcHHH
Confidence 45666777777777777777888889999998888887 4556666665444 455554221 356789999
Q ss_pred HHHHHHHHhhccCCCcc
Q 020255 219 KKLCDRARELENGRPTE 235 (328)
Q Consensus 219 ~~LC~f~~~~~~~~~~~ 235 (328)
..+.+-+ ++|+-...
T Consensus 269 Driy~~A--~~~GA~~g 283 (333)
T COG2605 269 DRIYELA--LKNGAYGG 283 (333)
T ss_pred HHHHHHH--HhcCchhc
Confidence 9997765 56665443
No 429
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=32.73 E-value=2.5e+02 Score=34.95 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-----------------HHHHHHHHHHHHHHHhhhchhhhhhH---HHHHHHHHHHH
Q 020255 141 YSSISAAQRQLSSKITSVDRDVN-----------------KIVEISQATQEEVTILRGRSKLIGDE---FQSVRDIVQTL 200 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klD-----------------eq~eis~~i~~eV~~v~~dls~ig~D---v~~v~~~V~~L 200 (328)
|+.|.....||.+|-+++....+ +|.|....|++. +.+-+++..++.| |..++....+|
T Consensus 918 sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK-~~~~e~t~~~~~Dl~gv~alqrrL~~l 996 (2473)
T KOG0517|consen 918 SDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDK-TRVLESTDRLGNDLAGVMALQRRLQGL 996 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHhccccCcchHHHHHHHHHHhhh
Confidence 45678889999999887765444 466667777654 4455666777777 44556666777
Q ss_pred HHHHHHhhhhhh
Q 020255 201 ESKLIEIEGKQD 212 (328)
Q Consensus 201 e~Ki~~ie~kQd 212 (328)
|.++.-||.|++
T Consensus 997 Erdl~aie~kv~ 1008 (2473)
T KOG0517|consen 997 ERDLAAIEAKVA 1008 (2473)
T ss_pred hhHHHHHHHHHH
Confidence 777777766644
No 430
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=32.49 E-value=1.7e+02 Score=25.32 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKr---hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..----.+..|-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 431
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.45 E-value=3.8e+02 Score=29.26 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~---eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
+.|.++++-+..-++.+-+.+. .|.+.++.|-.+++.|. +=.+.+.-|-.++.++|..|+.+++.+.+-|+.+
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e----~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIE----KLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444333332 23444455555555442 2335566677788889999999999999999888
Q ss_pred HHHHH
Q 020255 201 ESKLI 205 (328)
Q Consensus 201 e~Ki~ 205 (328)
+.++.
T Consensus 366 ~l~~~ 370 (581)
T KOG0995|consen 366 KLEIE 370 (581)
T ss_pred HHHHH
Confidence 77654
No 432
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.31 E-value=2.2e+02 Score=26.33 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=44.1
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis-~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+...|...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556788999999998888887765432222122222222222222222222 23345566666666666667777665
Q ss_pred H
Q 020255 196 I 196 (328)
Q Consensus 196 ~ 196 (328)
+
T Consensus 108 ~ 108 (198)
T cd07630 108 M 108 (198)
T ss_pred H
Confidence 5
No 433
>PHA03332 membrane glycoprotein; Provisional
Probab=32.20 E-value=4.5e+02 Score=31.13 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHH----HHHHHHHHHHHH
Q 020255 166 VEISQATQEEVTILRGRSKLIGDEFQ----SVRDIVQTLESK 203 (328)
Q Consensus 166 ~eis~~i~~eV~~v~~dls~ig~Dv~----~v~~~V~~Le~K 203 (328)
..|+..+++.+.++.+.++...++++ .+..-+.+|..+
T Consensus 922 ~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 922 AKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665555543 333444444444
No 434
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=31.92 E-value=1.3e+02 Score=27.20 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~ 177 (328)
+.++|..+-..+. +.+......++|.++++.+..+|+.+.++-..|.++..
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~ 88 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAE 88 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443322 33444556677888888888888888877777777663
No 435
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.91 E-value=3.9e+02 Score=29.33 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=41.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-+++++..+-+..+.+++..+
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777788888888888888887777777666666665555555555555444
No 436
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.89 E-value=15 Score=33.29 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=9.5
Q ss_pred eeeEcCcccceeec
Q 020255 9 TFLVGAGILTSVLA 22 (328)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (328)
+++||||++|..++
T Consensus 4 V~IvGaG~aGl~~A 17 (356)
T PF01494_consen 4 VAIVGAGPAGLAAA 17 (356)
T ss_dssp EEEE--SHHHHHHH
T ss_pred EEEECCCHHHHHHH
Confidence 57999999987655
No 437
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.86 E-value=3.5e+02 Score=29.18 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
+.|..+-..-..++.++.++++.|...++.+..+|+.--+++++..+-...+.+++..+
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888888888999999999999999998888888665555555555555555555443
No 438
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=31.62 E-value=38 Score=32.80 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEE-ecCCC--cCchhhhhhhhHHHHHHHHHH
Q 020255 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (328)
Q Consensus 63 aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--~SDlMfVTKRnMsnAvasvtK 135 (328)
+--++|+++|++. ...+.|+-++|-|+.-+....-++||+.|..=+| |+|-+ |---|.+|..+.+|-.++.+.
T Consensus 127 ~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT~~avaDelAaaA~ 203 (245)
T PRK13293 127 ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETTEVAVADELAAAAN 203 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeechHHHHHHHHHHHHH
Confidence 4467889999998 7788888877556543333344678887777666 77752 444578999988887766543
No 439
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.52 E-value=15 Score=33.58 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.3
Q ss_pred eeeEcCcccceeecc
Q 020255 9 TFLVGAGILTSVLAK 23 (328)
Q Consensus 9 ~ILvGAG~~GSVl~k 23 (328)
+|+||+|.+|++++.
T Consensus 3 ~iIVGsG~~G~v~A~ 17 (296)
T PF00732_consen 3 YIIVGSGAGGSVVAS 17 (296)
T ss_dssp EEEES-SHHHHHHHH
T ss_pred EEEECcCHHHHHHHH
Confidence 589999999999775
No 440
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=31.48 E-value=4.9e+02 Score=28.04 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHH---hHhhhhhhHHH------HHHH----------------HHHHHHHHHHhhhchhhhhhHHHHH
Q 020255 139 DVYSSISAAQRQLSS---KITSVDRDVNK------IVEI----------------SQATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 139 qVs~sLaaaKrhLsq---RId~vD~klDe------q~ei----------------s~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+.-|.+.-|++||.- |||...-++|. -.|+ +-..+.|+.+++-....-..|++.+
T Consensus 249 n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 249 NELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 345677788888764 44433333333 1122 1233678889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 020255 194 RDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQd 212 (328)
+.-+..|+..|..||+.|.
T Consensus 329 q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 329 QDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 441
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=31.41 E-value=2.9e+02 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 175 EVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
++.+.+.+..+...|++....-+..+
T Consensus 95 ~~~~~~k~~~~~~~~yd~~~~k~~~~ 120 (194)
T cd07307 95 EIKKRRKKLDKARLDYDAAREKLKKL 120 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555565555555554
No 442
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.35 E-value=2.7e+02 Score=22.22 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.7
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
+-..+++.+.+.-..|.+..+-++.+-+++.+=...+...+++.+.++..+..=...|..++ +++.+..-+.++
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~-r~~~~D~~li~~ 75 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE-RRDKTDRILIFF 75 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34678889999999999999999999999999999999999999888877766655555554 455555544443
No 443
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=31.22 E-value=1.6e+02 Score=22.80 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=29.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+..++.+|-.....-+.+.+.-......+.++..-++-+++.+-.|..|||
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444455556666667777777777777765
No 444
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=31.12 E-value=27 Score=28.99 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceeeeEcCcccceeeccCCCCcchhhhhhhHHHHHHHhhh-cCCC-----CCCCccchHH--HHHHHHHHHHHHhcC--C
Q 020255 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIK-QDDP-----GPSDRKLFND--LLAEVSSVQQELSHV--P 76 (328)
Q Consensus 7 Kv~ILvGAG~~GSVl~knGkLsDv~~~lsGalk~l~K~lk-~~d~-----s~s~s~~~~d--L~aQV~~LaqElr~L--s 76 (328)
||+++.|+|+..|++++. +.... +. ++++ +-+. ......+.+- +.-||+..-.++++. .
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~-------~~--~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~ 73 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQA-------EK--YEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN 73 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHH-------HH--CCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhcCC
Confidence 799999999999999843 22111 00 0111 0011 0001122322 455999999999987 4
Q ss_pred CceEEEeCC
Q 020255 77 RSVIIETSS 85 (328)
Q Consensus 77 r~iTVvn~~ 85 (328)
.||.+++.-
T Consensus 74 ~pV~~I~~~ 82 (106)
T PRK10499 74 KPVEVIDSL 82 (106)
T ss_pred CCEEEEChH
Confidence 688888753
No 445
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.08 E-value=3e+02 Score=32.18 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=44.0
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
+-++++ ||+ -+.+|..++.-+-.-|+-.+..+++-=..++....| .+.+.+++.+..-.++.|..++++..
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~E----l~~~~~~i~~~~p~i~~i~r~l~~~e 738 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELE----LQRTESEIDEFGPEISEIKRKLQNRE 738 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 445566 444 566677777776666766666665532333332222 23333444444444445555555555
Q ss_pred HHHHHHHHHHHHhhh
Q 020255 195 DIVQTLESKLIEIEG 209 (328)
Q Consensus 195 ~~V~~Le~Ki~~ie~ 209 (328)
..+..|+.++..+|.
T Consensus 739 ~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 739 GEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554443
No 446
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.03 E-value=1.4e+02 Score=22.72 Aligned_cols=38 Identities=11% Similarity=0.327 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
...+-.+.+.+|+.|-.-=.+++.|||.|...+.+...
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445556678888888888999999999988877654
No 447
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.02 E-value=3e+02 Score=22.52 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020255 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (328)
....++|..+..|-+++-.+++....-...||.-=.+|...=+.+...|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666656665555555555543
No 448
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=30.85 E-value=3.1e+02 Score=22.75 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=21.1
Q ss_pred HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhc
Q 020255 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (328)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~ 229 (328)
..+...++.+...-+.++..+..-..+|...-....+... ...++.|+...+
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e 126 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3344444444444444444444444444433322222222 222556665443
No 449
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=30.74 E-value=2.3e+02 Score=27.92 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=13.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 020255 134 ARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRId~vD~kl 162 (328)
-|-|||=-+.|.+..++|-+-++.+..|+
T Consensus 129 qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 129 QKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 450
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=30.73 E-value=4.4e+02 Score=24.41 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
|.+||......|.+..+-.....+++..+..-.+++...+...+.....++.++.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555544444444444444444444444444
No 451
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.71 E-value=3e+02 Score=29.76 Aligned_cols=180 Identities=12% Similarity=0.154 Sum_probs=97.7
Q ss_pred HHHHHHHhhhcCCCCCCCccchHHHHHHHHHHHHH--HhcC-CCceEEEeCCCCCCCCchhHHH-HHHhhhheeeEEecC
Q 020255 37 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQE--LSHV-PRSVIIETSSGSGTGAKKYGVI-VVIVAVGYGYVWWKG 112 (328)
Q Consensus 37 alk~l~K~lk~~d~s~s~s~~~~dL~aQV~~LaqE--lr~L-sr~iTVvn~~ssg~gg~~y~l~-a~iGavGYgYmwWKG 112 (328)
.|++-++-+++-++.++ .+..|..+-++|.+= |.+. .+-+..+++. +...+.+..+ -+...+.+ .
T Consensus 189 ~L~fq~~Ele~~~l~~g---E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge--~~~~~~~~~l~~a~~~l~~------~ 257 (557)
T COG0497 189 LLQFQLEELEELNLQPG---EDEELEEERKRLSNSEKLAEAIQNALELLSGE--DDTVSALSLLGRALEALED------L 257 (557)
T ss_pred HHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHHHH------h
Confidence 34444544554444443 122277766666542 2222 4455566654 2222334442 23444432 0
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 020255 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 113 ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 189 (328)
-.+.. .=+.+.+.++..--+|+.++..|...-..|. +|++.+..+|.....+.+--.-.+.++-.-..++..+
T Consensus 258 ~~~d~----~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~e 333 (557)
T COG0497 258 SEYDG----KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEE 333 (557)
T ss_pred hccCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11111 1133444444444555556666666666665 4899999988888888777666666666666666666
Q ss_pred HHHHHHH---HHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHhhccC
Q 020255 190 FQSVRDI---VQTLESKLIEIEGKQDITTLGVKKLC-DRARELENG 231 (328)
Q Consensus 190 v~~v~~~---V~~Le~Ki~~ie~kQd~Tn~GV~~LC-~f~~~~~~~ 231 (328)
++.+... ...||.++..+..+=..+..-+-..= +++..++..
T Consensus 334 l~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~ 379 (557)
T COG0497 334 LAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKE 379 (557)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654 66788888887766555555444432 344444433
No 452
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.64 E-value=4.1e+02 Score=27.23 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=31.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+.|..+-.+-..+++++.+++..|...++.+...|+.--++++...+-...+.+++
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 182 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKI 182 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777766666655443333333333333333333
No 453
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.60 E-value=1.1e+02 Score=26.23 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
|+.|-.++..+...+.+..+-...++++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888887777888887777776666666666666555544
No 454
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=30.58 E-value=2.3e+02 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
++|..-+-.|...|.|-+|-+++|++-. ..|++.+|..|+-+-.==..+++|-|+
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiM----------DKDFDKL~EFVEIMKeMQkDMDEKMDv 104 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIM----------DKDFDKLHEFVEIMKEMQKDMDEKMDV 104 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhHHHhhhH
No 455
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=30.50 E-value=4.3e+02 Score=29.65 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e-V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (328)
|.+--++....|-.+-.|+.++|.-|.+|+.-....++| --.+++-+..+-.+.++++ ..||.||.++...-..+.
T Consensus 29 lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~---~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 29 LKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK---SELEAKLAELSKRLAESA 105 (769)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcc
Q 020255 216 LGVKKLCDRARELEN 230 (328)
Q Consensus 216 ~GV~~LC~f~~~~~~ 230 (328)
.--..|+..+...++
T Consensus 106 ~e~~~l~~~l~~~~~ 120 (769)
T PF05911_consen 106 AENSALSKALQEKEK 120 (769)
T ss_pred hhhHHHHHHHHHHHH
No 456
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.47 E-value=7.5e+02 Score=27.01 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHH
Q 020255 145 SAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~ 166 (328)
..=|+|...||..|..+|-+.+
T Consensus 42 ~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 42 KEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666776666665543
No 457
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.31 E-value=3.1e+02 Score=22.49 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=55.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
....-..+++-.+.|......|...+.+.|.=+.+..+=...-......-...-.....++..++.-+..|...+..++.
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888898888888888887777665555555555555556666666666666666666666554
Q ss_pred h
Q 020255 210 K 210 (328)
Q Consensus 210 k 210 (328)
+
T Consensus 103 ~ 103 (126)
T PF13863_consen 103 K 103 (126)
T ss_pred H
Confidence 4
No 458
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.26 E-value=4.1e+02 Score=28.79 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=12.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
+|+.+...++....-.+++.+++.+.+.....+.
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 459
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.26 E-value=2.5e+02 Score=28.47 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQ 150 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrh 150 (328)
.+.+..+.+.+++++..+.+...+++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 460
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=30.14 E-value=1.4e+02 Score=28.01 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-HHHHHHHHHHHHHHHHHHhhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-EFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~-Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
+|...+.|--|+-|+.. +++.++-..||++...+..|++.-++ -..--...|.-||..|++.+.
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~ 102 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNA 102 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHh
Confidence 56777777777777654 78888889999999999999887771 011223446666666665543
No 461
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=30.08 E-value=3.7e+02 Score=23.42 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=9.1
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 020255 183 SKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 183 ls~ig~Dv~~v~~~V~~Le 201 (328)
.++..+|++..+..+..++
T Consensus 92 ~~~l~~ei~~~~~~~sd~~ 110 (115)
T COG4980 92 IERLKSEIEDLQEAISDET 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444433
No 462
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=30.04 E-value=5e+02 Score=26.45 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=56.8
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK--------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR--------Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
|-.|+++. ...+.|++.+.-.++-.|+|-.| ++++|-=||+...-.-..-|++.+++.++.+-+.++.
T Consensus 210 ~~lr~~~~----~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~ 285 (377)
T PF14728_consen 210 FELRQELK----ELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLS 285 (377)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555444 45566666677777777777755 5788888888888888888889999999999988888
Q ss_pred HHHHHHHH
Q 020255 192 SVRDIVQT 199 (328)
Q Consensus 192 ~v~~~V~~ 199 (328)
..-+++..
T Consensus 286 ~~~~Ll~~ 293 (377)
T PF14728_consen 286 CATQLLIL 293 (377)
T ss_pred HHHHHHHH
Confidence 87776643
No 463
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=29.98 E-value=5.3e+02 Score=28.48 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh-----------hhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL-----------RGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v-----------~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
+.-.+..-|.+.+..+..+++-+++|++.+....+.++++.++. ...+.-|=.|++.=++.+..||..+
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555556666666665555555555544444 4446677777888888888888877
Q ss_pred HHhhh
Q 020255 205 IEIEG 209 (328)
Q Consensus 205 ~~ie~ 209 (328)
..+..
T Consensus 259 e~L~~ 263 (629)
T KOG0963|consen 259 EQLRE 263 (629)
T ss_pred HHHHH
Confidence 76653
No 464
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=29.98 E-value=4.8e+02 Score=24.63 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR 154 (328)
.++.+.+....+-|++.+.+..|..+|+..-++
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~ 145 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAA 145 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777888888888777765433
No 465
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=29.97 E-value=5.9e+02 Score=27.70 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=57.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-------HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-------TQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~-------i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
+.+-.+++.+++-+..|. ++++.|+.++.|-.+++.=..- ++..-.+--+.+++...+++....-+..|-.+
T Consensus 274 ~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666777777764 4788888888776555443333 33333333345666667777666667777777
Q ss_pred HHHhh---hhhhhhhHHHHHHHH
Q 020255 204 LIEIE---GKQDITTLGVKKLCD 223 (328)
Q Consensus 204 i~~ie---~kQd~Tn~GV~~LC~ 223 (328)
++++. .||++...-+....+
T Consensus 353 ~d~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 353 IDELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 77766 468887777766653
No 466
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.84 E-value=5.6e+02 Score=25.37 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=15.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
+....+++.++.-...||....+++.+-+.-..-|+.|-.
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 3333334444444444444444444433333333444433
No 467
>PHA02414 hypothetical protein
Probab=29.69 E-value=1.4e+02 Score=25.74 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (328)
|-.||+++.+|+++-.=+- ++|-......+..++.||-.|+..+.-=++||-+--.-|..|-
T Consensus 9 Lv~~v~~ledKiQ~Gelt~----------kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Le 70 (111)
T PHA02414 9 LVSQVETLEDKIQEGELTD----------KGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLE 70 (111)
T ss_pred HHHHHHHHHHHHhcCcccc----------CCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHH
Confidence 4556777777765432222 2233333444555555555555555555555544443333333
No 468
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.67 E-value=2.4e+02 Score=30.31 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
+.|.+|+.-=|...+.-.+..+.|.++|++++..=...---|...++.-..|+.+|=+|--||.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888777777777777777888888777632222223344445445555555555544443
No 469
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=29.54 E-value=1.2e+02 Score=27.06 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=30.7
Q ss_pred EecCCCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020255 109 WWKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (328)
Q Consensus 109 wWKGws~SDlMfVTKRn---MsnAvasvtKqLeqVs~sLaaaKrhLsqRId 156 (328)
-||--|+++|--+|--+ +.+..-=-.++|+..-..|..-|..|..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 6 NRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred hcccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38888888888888766 2222222235777777777666666665554
No 470
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.51 E-value=5.2e+02 Score=24.91 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=69.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH----------HHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE----------ISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e----------is~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
++-+|.+-+.|+........+....+.||+.+..||-.|.+ ..+..+.++..+-...++-.+-...-+++
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999988765 44677788888888888888889999999
Q ss_pred HHHHHHHHHHhh
Q 020255 197 VQTLESKLIEIE 208 (328)
Q Consensus 197 V~~Le~Ki~~ie 208 (328)
|.-+|..+..=.
T Consensus 100 v~laEq~l~~~~ 111 (239)
T PF05276_consen 100 VALAEQSLMSDS 111 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999998887644
No 471
>PF13514 AAA_27: AAA domain
Probab=29.30 E-value=3.1e+02 Score=31.21 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 142 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
+.+......+..+|+.+..++++..+-...++.++..+.++ +++..+.+-...++.+|.+....=-....+...|
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-----~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL 966 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-----DDAAELEQEREEAEAELEELAEEWAALRLAAELL 966 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhccCCCcccee
Q 020255 222 CDRARELENGRPTELVQ 238 (328)
Q Consensus 222 C~f~~~~~~~~~~~~~Q 238 (328)
-+..+.......+.+++
T Consensus 967 ~~a~~~~r~~~~p~vl~ 983 (1111)
T PF13514_consen 967 EEAIERYREERQPPVLA 983 (1111)
T ss_pred HHHHHHHHHHhhHHHHH
No 472
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.28 E-value=5.7e+02 Score=25.32 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Q 020255 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (328)
Q Consensus 169 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (328)
.+..+.|+....+++.+...++..+++-+...-+||.+++.+--....-|.++=-=++++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555555555555555666666655544444444444334333
No 473
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.27 E-value=38 Score=27.56 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
|=|.||+.-+.. ++..=++-=+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 458888775542 33333333444555667899999999887774
No 474
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.23 E-value=1.9e+02 Score=29.46 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=44.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~---ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f 224 (328)
+|-.+|.+.-+...-....+.+.+++...+.. -+.|.+.+..-+..|..+|..+|.+......-+..++.-
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555433 223566777777788888888888888777777776553
No 475
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.17 E-value=6e+02 Score=25.50 Aligned_cols=69 Identities=16% Similarity=0.265 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
|-.--.++.+-|+.+..+|.-+-.+-++..+......+++.+++.+.. .-|.++.++...++-||-+.-
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 333445566677777777777777777777777777777777777766 557777777766666666554
No 476
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.08 E-value=4e+02 Score=28.22 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq-----~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
......+|.+|..-|..+.++|++. .+-.+.+++.+.+..+-|.. +|.+.+++....|+.++..++.+
T Consensus 522 ~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~ 594 (627)
T PRK00290 522 RKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEA 594 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777778777632 22234444445555554442 26777777777777777777764
No 477
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=29.06 E-value=1.4e+02 Score=28.95 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
.+|-.+...+...|+.|...-+-+...+.... .+.+.+++...++..++.+..+.++..++++..|=+-..+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666655554444444443 5666777777777777777777777777776665444333
No 478
>PRK09303 adaptive-response sensory kinase; Validated
Probab=28.95 E-value=1.3e+02 Score=29.15 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhchhhh
Q 020255 168 ISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 168 is~~i~~eV~~v~~dls~i 186 (328)
++-.+++-++.++.-++.+
T Consensus 158 iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 158 LAHDLRTPLTAASLALETL 176 (380)
T ss_pred HhHhhcchHHHHHHHHHHH
Confidence 4444555555554444433
No 479
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.88 E-value=3.7e+02 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=39.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
+...||..+..++.-.+.-.+.+.+|+..++...++|..+++.++.
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3457888888888888888999999999999999999999888874
No 480
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.88 E-value=2.6e+02 Score=21.29 Aligned_cols=59 Identities=8% Similarity=0.277 Sum_probs=40.1
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
++.+.+||+.+-.+++.-..+-+...+=+.....+-.. .+...++.....-..||+.+.
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr 62 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELLK 62 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999988888887777755443333211 467777766666666766554
No 481
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=28.86 E-value=3.6e+02 Score=27.17 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHhhhheeeEE-ecCCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 97 IVVIVAVGYGYVW-WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 97 ~a~iGavGYgYmw-WKGws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
++++.++-++.++ |-+ -=+++=.+|+.-...+++...--.--.-+.|-- |.++-++|++-.|-...+-+-
T Consensus 212 ~aa~~a~P~~~~gkw~~--------~~~~k~~~al~~~~~~l~~aakGtyI~~~DldT-IsrLV~RL~deIE~~~~~v~f 282 (336)
T PF05055_consen 212 LAAALAAPIGSVGKWCG--------SLWKKYEEALKKQKEQLDAAAKGTYILIKDLDT-ISRLVDRLEDEIEHMKALVDF 282 (336)
T ss_pred HHHHHccchHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 176 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
--+-++|=..+..-++.++.-+..+..+|+++|+.
T Consensus 283 ave~~~d~~~vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 283 AVERGEDEEAVKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHH
No 482
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=28.81 E-value=2.1e+02 Score=20.07 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=11.8
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTI 178 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~ 178 (328)
+.|+++...+-++.++...|..+|.+
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~ 37 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEE 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 483
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.78 E-value=4.5e+02 Score=28.38 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=18.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
-|.|.++||+.|-.++.....=.....+|...++..++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555444333334444333333333
No 484
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=28.68 E-value=7.2e+02 Score=27.67 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=39.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH--HHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le--~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
..-++++.+.+.+|-- .+.+-+++++.-......=.+.=+.+|.-+. .++..+-.+-..|+.-...||.|++
T Consensus 35 ~~h~~~~~~e~~~~ln---~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~ 108 (742)
T COG5173 35 EHHDGNLSAEISKCLN---NILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVE 108 (742)
T ss_pred HhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 3333343333333333333333444554444 3566677788889999999999886
No 485
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=28.39 E-value=3e+02 Score=24.11 Aligned_cols=86 Identities=16% Similarity=0.301 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHhH---HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 122 TKRnMsnAvasvtKqL---eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
-+-||.|.+.++-+.| +.+-+.+.+-|++.-++++.+..+.+...++.. -.+.+..++.| =.
T Consensus 42 ~~TnMvDy~~d~~~~l~~~~e~p~e~~~kr~~Vl~~l~~l~~~~~~v~~~~~-~~ev~~~l~~d-------k~------- 106 (133)
T PF09440_consen 42 KKTNMVDYAMDLYKELYPDDEVPAELAEKREEVLAELKELEEETEPVLELLE-DPEVVKNLRSD-------KK------- 106 (133)
T ss_pred HhccchHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHcc-------HH-------
Confidence 3568888888888888 556777777788887777776665555554432 11222222221 11
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020255 199 TLESKLIEIEGKQDITTLGVKKLCDRA 225 (328)
Q Consensus 199 ~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (328)
.-++-++.+=++|-.=|..|.+|+
T Consensus 107 ---~nl~~L~~~h~it~e~id~LY~~a 130 (133)
T PF09440_consen 107 ---QNLEYLEENHGITPEMIDALYKYA 130 (133)
T ss_pred ---HHHHHHHHhcCCCHHHHHHHHHHh
Confidence 123345556677777777777765
No 486
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.35 E-value=4.9e+02 Score=28.21 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=44.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHh-------HHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 115 LPDMMFATRRSLSDACNSVARQ-------LEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKq-------LeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
+.++.=+-.....+.+....+. +..+++.+...|+.+.. .....-.++++.......++.|..-++.+..
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4444444444444444444433 33344444444433322 2333334444444555555555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 185 LIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.+.+|+.-|+.=...|..-|.++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555555555555555555555554
No 487
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.21 E-value=1.3e+02 Score=24.08 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 020255 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 131 asvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~ 188 (328)
.++.+....+---|..||..+ .-+..++..+++|.+-.+..++++..-+.=|..++.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555443 346668888888888888888887666665554443
No 488
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.19 E-value=5.4e+02 Score=30.10 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=13.5
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
.++..+...++..+.+.+..+++.|..+-.++.+
T Consensus 296 ~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 296 QRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333333333
No 489
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=28.03 E-value=1.7e+02 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH--HHHHhHhhhhhhHH
Q 020255 129 ACNSVARQLEDVYSSISAAQR--QLSSKITSVDRDVN 163 (328)
Q Consensus 129 AvasvtKqLeqVs~sLaaaKr--hLsqRId~vD~klD 163 (328)
||=+++..+.+........+. ++.+||+.+..+||
T Consensus 53 aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 53 AALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
No 490
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=27.93 E-value=5.1e+02 Score=24.32 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH------HHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF------QSVRDIVQT 199 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv------~~v~~~V~~ 199 (328)
++.+-..=...++....-+.+.++.+.+-++.-+...++..+.++.+.+++.++...-......+ +.-..-+..
T Consensus 144 ~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (247)
T PF14661_consen 144 LAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQLKKLQKSDASNRQLWE 223 (247)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q ss_pred ---------HHHHHHHhhhhhh
Q 020255 200 ---------LESKLIEIEGKQD 212 (328)
Q Consensus 200 ---------Le~Ki~~ie~kQd 212 (328)
+..+++.|...+.
T Consensus 224 ~~~~~w~~~~~~~~~kvr~~W~ 245 (247)
T PF14661_consen 224 QVRNNWSGSLQEKIQKVRELWM 245 (247)
T ss_pred HHHHhhchhhHHHHHHHHHHHh
No 491
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.90 E-value=1.4e+02 Score=33.87 Aligned_cols=81 Identities=10% Similarity=0.260 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (328)
.+++-=..++......+..||....+.++.+..+.+.+.++-..+...+++....++.....+..+-.|+.+++..-|-.
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred h
Q 020255 215 T 215 (328)
Q Consensus 215 n 215 (328)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 492
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.87 E-value=3.9e+02 Score=24.71 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHH
Q 020255 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 117 DlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~-i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
|.|---||.|+++...+++.+..+++.=..+ -|++-+.++.+--+...++... -.+|...+.+.|...-..+.+|+.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 020255 196 IVQT 199 (328)
Q Consensus 196 ~V~~ 199 (328)
++..
T Consensus 114 ~f~~ 117 (224)
T cd07623 114 VFHE 117 (224)
T ss_pred HHHH
No 493
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.84 E-value=2.6e+02 Score=27.50 Aligned_cols=97 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hHhhhhhh-HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSS-KITSVDRD-VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsq-RId~vD~k-lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 197 (328)
++|| ++.--..+-.+=+.+.+--.-..+|..+ -.+-.+.. ++.+.++.++=.+.+..+..|+-....-++.+-.||
T Consensus 126 ~~a~--~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV 203 (269)
T KOG0811|consen 126 MVAR--GSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLV 203 (269)
T ss_pred cccc--ccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhhhhHHH
Q 020255 198 QTLESKLIEIEGKQDITTLGV 218 (328)
Q Consensus 198 ~~Le~Ki~~ie~kQd~Tn~GV 218 (328)
..=+..+|+||++-+.|..-|
T Consensus 204 ~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 204 HEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHhhhHHhHHHHHHHHHHHHH
No 494
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.84 E-value=3e+02 Score=27.92 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~k----lDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
|-|.-..-++.+++..++-+.+|...|++|..=.+.+..- =.+..+..+.+++++.+.+.-+.++.
T Consensus 19 thr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 19 THRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHH
No 495
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.76 E-value=6.1e+02 Score=26.88 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH----------------------HHHHHHHhHhhhhhhHHHHHHHHHHHHHH-------
Q 020255 125 SLSDACNSVARQLEDVYSSISA----------------------AQRQLSSKITSVDRDVNKIVEISQATQEE------- 175 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaa----------------------aKrhLsqRId~vD~klDeq~eis~~i~~e------- 175 (328)
++-+|.+.+.||+|.+.+.+.. +|+-+..+|++.+.+++....+--+|.+-
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Q ss_pred ------HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 176 ------VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 176 ------V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
...++.-+.+ +.-.++|+.++..+..-+++=++=++.
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~EV~~~ 359 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEEVEDA 359 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHHHHHH
No 496
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.76 E-value=3.1e+02 Score=21.65 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
..|...-++|..+-.....+++..+.++.+.-..+......++....-+..|+.++.+-|
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 497
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=27.52 E-value=3.6e+02 Score=22.42 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.+.||+++..+.+.+.+..++-++...+++.++.....=+...+..=..++.+.+....+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK08124 flagellar motor protein MotA; Validated
Probab=27.44 E-value=5.1e+02 Score=24.88 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred hHHHHHHhhhheeeEEecC-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-HhhhhhhHHHHHH
Q 020255 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK-ITSVDRDVNKIVE 167 (328)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR-Id~vD~klDeq~e 167 (328)
.++++++|++-+||++=.| |.++-+|-|-=-.+.-++ ++--+..+..++...|+-+..+ -.+-.+-+++..+
T Consensus 7 iG~~~~~~~i~~g~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~--i~~~~~~~~~~~k~~~~~f~~~~~~~~~~~i~~l~~ 84 (263)
T PRK08124 7 IGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVM--IAFPMSELKKVPKLFKVLFKEKKDPSKEELIEQFVE 84 (263)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Q ss_pred HHHHHHHH-HHHhhhchhhhhhHH--HHHHHHHH---------HHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 020255 168 ISQATQEE-VTILRGRSKLIGDEF--QSVRDIVQ---------TLESKLIEIEGKQDITTLGVKKLCDRA 225 (328)
Q Consensus 168 is~~i~~e-V~~v~~dls~ig~Dv--~~v~~~V~---------~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (328)
+...-+.+ +-.+..+++++.+.+ +.++.++. .||..++..+...+....=...+-.++
T Consensus 85 l~~~~r~~g~laLe~~~~~~~~~fl~~gl~~~v~g~~~~~i~~~le~~i~~~~~~~~~~~~~l~~ia~~A 154 (263)
T PRK08124 85 WASESRREGLLALEAQLDEIDDPFLKRGLKMVIDGQSPEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYA 154 (263)
T ss_pred HHHHhchhhHHHHHHhhcCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
No 499
>PHA03332 membrane glycoprotein; Provisional
Probab=27.36 E-value=8.5e+02 Score=29.02 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
++|++..++..|.+.+..|..-=++...||+.|.++++.. .+....+..=-+.+++++....+.|+..+....=- ..|
T Consensus 910 lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~~~aaalyY-QQl 988 (1328)
T PHA03332 910 TSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYY-QQL 988 (1328)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHH
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHhhccCCCccceeccccccc
Q 020255 205 IEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 245 (328)
Q Consensus 205 ~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~ 245 (328)
.++...--..+.-+.+-++....-=++..+.++|+-|-+.+
T Consensus 989 nsltnqv~~saskL~~qv~myrTCl~Sl~aG~L~GCP~~~p 1029 (1328)
T PHA03332 989 NSLTNQVTQSASKLGYQVGMYRTCLKSLLAGTLAGCPTDAP 1029 (1328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCCCCh
No 500
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.34 E-value=4.9e+02 Score=27.25 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhhhhhHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~--dls~ig~Dv~~v~~~V~ 198 (328)
+.|..+-.+-..+.+++.++++.|...++.+..+|+..-++++...+-...+.+++..+.. .=..-.+=+++=.+++.
T Consensus 128 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~~~g~~~ndL~DqRD~ll~ 207 (547)
T PRK08147 128 AARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITRLTGVGAGASPNDLLDQRDQLVS 207 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q ss_pred HHHHHHH
Q 020255 199 TLESKLI 205 (328)
Q Consensus 199 ~Le~Ki~ 205 (328)
.|-..++
T Consensus 208 eLS~~v~ 214 (547)
T PRK08147 208 ELNQIVG 214 (547)
T ss_pred HHHhhcC
Done!