Query 020255
Match_columns 328
No_of_seqs 61 out of 63
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 14:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.2 0.11 3.8E-06 41.6 6.3 77 120-208 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 93.2 1.1 3.7E-05 36.7 11.0 79 131-209 11-96 (107)
3 1m1j_B Fibrinogen beta chain; 89.1 3 0.0001 41.9 11.5 96 115-210 87-190 (464)
4 3mq9_A Bone marrow stromal ant 88.4 5.4 0.00019 38.0 12.4 77 125-202 356-432 (471)
5 3oja_A Leucine-rich immune mol 88.0 2.6 9E-05 40.3 10.0 66 158-223 412-477 (487)
6 3g67_A Methyl-accepting chemot 87.9 5 0.00017 36.0 11.1 39 126-164 5-43 (213)
7 3g67_A Methyl-accepting chemot 87.9 7.8 0.00027 34.7 12.4 60 133-192 5-64 (213)
8 1deq_A Fibrinogen (alpha chain 87.1 4.5 0.00015 40.0 11.0 93 116-208 55-154 (390)
9 3tnu_B Keratin, type II cytosk 86.3 1.5 5.3E-05 36.1 6.4 64 141-207 28-94 (129)
10 3ghg_A Fibrinogen alpha chain; 86.1 6.3 0.00022 40.5 11.8 95 116-210 52-153 (562)
11 3trt_A Vimentin; cytoskeleton, 85.5 6.2 0.00021 29.4 8.9 70 125-194 6-76 (77)
12 3na7_A HP0958; flagellar bioge 85.1 4.6 0.00016 36.4 9.4 55 157-211 64-120 (256)
13 2qyw_A Vesicle transport throu 85.0 1.9 6.6E-05 34.5 6.1 60 118-180 16-76 (102)
14 3onj_A T-snare VTI1; helix, HA 84.5 3 0.0001 33.0 7.0 53 124-179 8-60 (97)
15 3tnu_A Keratin, type I cytoske 84.3 1.6 5.3E-05 36.2 5.5 70 135-207 24-96 (131)
16 3okq_A BUD site selection prot 84.2 13 0.00046 32.0 11.4 78 143-220 11-108 (141)
17 1vcs_A Vesicle transport throu 83.0 1.4 4.9E-05 35.2 4.6 62 116-180 4-65 (102)
18 2akf_A Coronin-1A; coiled coil 82.1 1.4 4.6E-05 29.4 3.3 29 183-211 1-29 (32)
19 3oja_B Anopheles plasmodium-re 82.0 11 0.00036 36.7 11.2 37 123-159 458-494 (597)
20 2yo3_A General control protein 82.0 2.6 8.8E-05 39.8 6.6 58 137-194 200-257 (268)
21 4dnd_A Syntaxin-10, SYN10; str 81.7 3.5 0.00012 34.6 6.7 59 122-182 68-127 (130)
22 1c1g_A Tropomyosin; contractIl 81.6 21 0.00072 29.4 13.9 34 174-207 69-102 (284)
23 3gwk_C SAG1039, putative uncha 80.1 16 0.00056 27.2 10.4 69 137-205 13-93 (98)
24 3zx6_A HAMP, methyl-accepting 80.0 38 0.0013 31.4 14.2 15 216-230 283-297 (341)
25 3mq9_A Bone marrow stromal ant 79.5 18 0.00062 34.3 11.7 44 124-167 369-418 (471)
26 2jee_A YIIU; FTSZ, septum, coi 78.8 15 0.00052 29.0 9.0 68 155-222 8-75 (81)
27 3hnw_A Uncharacterized protein 78.5 18 0.00062 30.5 10.1 64 150-213 72-135 (138)
28 1deq_A Fibrinogen (alpha chain 78.0 16 0.00054 36.2 10.9 82 140-221 54-139 (390)
29 1m1j_A Fibrinogen alpha subuni 78.0 20 0.00067 36.4 11.7 100 111-210 48-154 (491)
30 3zx6_A HAMP, methyl-accepting 78.0 44 0.0015 31.0 14.1 9 61-69 11-19 (341)
31 1kmi_Z CHEZ, chemotaxis protei 77.9 12 0.00041 33.6 9.4 116 124-239 26-170 (214)
32 3a7p_A Autophagy protein 16; c 77.4 30 0.001 30.2 11.3 70 129-213 59-129 (152)
33 2xzr_A Immunoglobulin-binding 77.2 27 0.00094 28.9 10.4 70 126-195 32-104 (114)
34 3u59_A Tropomyosin beta chain; 75.9 27 0.00093 27.5 11.9 86 144-229 14-99 (101)
35 4abx_A DNA repair protein RECN 75.7 7 0.00024 33.3 6.9 92 114-209 67-164 (175)
36 3c9i_A Tail needle protein GP2 74.8 8.9 0.0003 35.4 7.6 59 152-210 83-141 (242)
37 1m1j_C Fibrinogen gamma chain; 74.7 24 0.0008 34.8 11.2 42 166-207 83-124 (409)
38 1fxk_C Protein (prefoldin); ar 74.0 5.8 0.0002 32.2 5.7 40 145-184 87-126 (133)
39 1m1j_B Fibrinogen beta chain; 73.9 31 0.0011 34.6 12.0 42 141-182 88-129 (464)
40 3m0a_A TNF receptor-associated 73.2 18 0.00061 26.3 7.7 58 151-208 3-60 (66)
41 1ic2_A Tropomyosin alpha chain 73.2 22 0.00074 27.1 8.4 60 149-208 16-75 (81)
42 1gl2_D Syntaxin 8, vesicle tra 73.2 9.6 0.00033 27.7 6.2 48 155-216 11-58 (65)
43 3u59_A Tropomyosin beta chain; 72.5 33 0.0011 27.0 10.4 67 135-201 33-99 (101)
44 2l5g_B Putative uncharacterize 72.4 2.9 9.8E-05 29.6 2.9 30 147-176 3-32 (42)
45 3htk_A Structural maintenance 72.1 12 0.00042 26.5 6.4 46 157-202 9-54 (60)
46 4ioe_A Secreted protein ESXB; 71.5 27 0.00093 25.6 9.1 30 129-158 13-42 (93)
47 3ghg_A Fibrinogen alpha chain; 70.6 24 0.00083 36.3 10.4 74 140-213 51-128 (562)
48 3u1c_A Tropomyosin alpha-1 cha 70.5 38 0.0013 26.9 10.6 80 147-226 17-96 (101)
49 4ioe_A Secreted protein ESXB; 70.1 29 0.001 25.4 10.1 58 135-192 12-74 (93)
50 1n7s_D SNAP-25A; neuronal snar 70.0 26 0.0009 25.4 7.9 52 153-218 10-61 (66)
51 1sfc_D Protein (SNAP-25B), pro 69.8 18 0.00063 27.9 7.4 46 176-221 38-83 (87)
52 1ic2_A Tropomyosin alpha chain 69.7 34 0.0012 26.0 9.5 65 151-215 4-68 (81)
53 2nps_D Syntaxin-6; vesicle fus 69.6 17 0.00059 27.6 7.2 40 184-223 36-75 (82)
54 1l8d_A DNA double-strand break 69.4 38 0.0013 26.4 9.9 35 130-164 5-42 (112)
55 3zbh_A ESXA; unknown function, 68.9 32 0.0011 25.3 11.0 29 136-164 13-41 (99)
56 3efg_A Protein SLYX homolog; x 68.4 12 0.00042 28.9 6.1 54 149-209 10-63 (78)
57 2nps_D Syntaxin-6; vesicle fus 68.2 10 0.00035 29.0 5.6 57 153-209 19-75 (82)
58 2zdi_C Prefoldin subunit alpha 67.4 8.6 0.00029 32.1 5.4 40 145-184 97-136 (151)
59 1m1j_C Fibrinogen gamma chain; 66.7 47 0.0016 32.7 11.3 49 182-230 85-133 (409)
60 1sfc_D Protein (SNAP-25B), pro 65.7 34 0.0012 26.4 8.2 58 150-207 26-83 (87)
61 1gl2_D Syntaxin 8, vesicle tra 65.4 13 0.00044 27.0 5.4 48 134-185 8-55 (65)
62 3ghg_C Fibrinogen gamma chain; 65.2 44 0.0015 33.1 10.7 91 116-206 26-123 (411)
63 3swy_A Cyclic nucleotide-gated 63.9 14 0.00046 26.4 5.1 36 126-161 10-45 (46)
64 3na7_A HP0958; flagellar bioge 63.6 82 0.0028 28.2 12.7 58 151-208 102-163 (256)
65 1jth_B Syntaxin 1A; coiled-coi 62.8 38 0.0013 25.3 7.8 58 173-230 9-70 (77)
66 3htk_A Structural maintenance 62.6 31 0.001 24.4 6.9 47 136-182 9-55 (60)
67 2vs0_A Virulence factor ESXA; 62.4 43 0.0015 24.4 8.3 64 137-200 11-86 (97)
68 3swf_A CGMP-gated cation chann 61.3 24 0.00082 27.5 6.5 39 126-164 12-50 (74)
69 3zbh_A ESXA; unknown function, 61.1 46 0.0016 24.4 10.2 76 129-204 13-93 (99)
70 2nps_B Syntaxin 13, vesicle-as 60.6 35 0.0012 25.2 7.1 54 174-227 6-63 (71)
71 3cvf_A Homer-3, homer protein 59.9 36 0.0012 26.7 7.3 60 128-208 6-65 (79)
72 2dfs_A Myosin-5A; myosin-V, in 59.9 58 0.002 35.5 11.4 15 153-167 984-998 (1080)
73 3kkj_A Amine oxidase, flavin-c 57.9 2.1 7.3E-05 33.2 0.0 14 9-22 5-18 (336)
74 2xdj_A Uncharacterized protein 57.7 45 0.0015 26.1 7.6 27 170-196 30-56 (83)
75 3gwk_C SAG1039, putative uncha 57.7 55 0.0019 24.2 9.7 19 158-176 60-78 (98)
76 3o0z_A RHO-associated protein 57.6 1E+02 0.0034 27.2 11.9 81 124-208 58-138 (168)
77 3ci9_A Heat shock factor-bindi 57.5 23 0.00078 25.4 5.3 41 125-165 3-43 (48)
78 1wle_A Seryl-tRNA synthetase; 57.4 39 0.0013 33.9 9.0 29 143-174 74-102 (501)
79 3ghg_C Fibrinogen gamma chain; 57.2 1.2E+02 0.0042 29.9 12.3 92 139-230 24-133 (411)
80 1m1j_A Fibrinogen alpha subuni 56.9 49 0.0017 33.6 9.5 46 147-192 112-157 (491)
81 3u1c_A Tropomyosin alpha-1 cha 56.5 73 0.0025 25.2 11.8 52 149-200 47-98 (101)
82 2v71_A Nuclear distribution pr 56.4 1.1E+02 0.0038 27.3 13.4 99 122-220 29-134 (189)
83 2jee_A YIIU; FTSZ, septum, coi 56.2 72 0.0025 25.1 8.5 46 161-206 28-80 (81)
84 4i0x_B ESAT-6-like protein MAB 55.9 66 0.0023 24.6 8.8 34 135-168 14-47 (103)
85 3cve_A Homer protein homolog 1 55.9 58 0.002 25.1 7.8 46 149-194 17-62 (72)
86 2b9c_A Striated-muscle alpha t 55.0 65 0.0022 27.4 8.8 68 153-220 52-119 (147)
87 3zcc_A HAMP, osmolarity sensor 55.0 54 0.0018 23.3 8.0 24 166-189 65-88 (114)
88 1n7s_D SNAP-25A; neuronal snar 54.6 53 0.0018 23.7 7.2 48 133-184 8-55 (66)
89 3fav_B ESAT-6, 6 kDa early sec 54.6 41 0.0014 24.8 6.7 28 137-164 10-37 (94)
90 2w83_C C-JUN-amino-terminal ki 54.3 77 0.0026 24.9 8.3 65 124-209 5-72 (77)
91 3s84_A Apolipoprotein A-IV; fo 54.2 63 0.0022 29.8 9.3 27 165-191 207-233 (273)
92 1sfc_B Protein (syntaxin 1A), 53.8 70 0.0024 24.2 8.2 55 172-226 19-77 (83)
93 3fav_A ESAT-6-like protein ESX 53.3 57 0.0019 24.5 7.4 65 137-201 12-88 (101)
94 3cvf_A Homer-3, homer protein 52.5 68 0.0023 25.1 7.8 52 123-174 22-73 (79)
95 3m0d_C TNF receptor-associated 51.7 59 0.002 23.9 7.1 37 172-208 25-61 (65)
96 3gp4_A Transcriptional regulat 51.0 77 0.0026 26.1 8.5 21 188-208 95-115 (142)
97 2zqm_A Prefoldin beta subunit 50.6 30 0.001 26.8 5.7 15 61-75 25-39 (117)
98 4dnd_A Syntaxin-10, SYN10; str 49.9 1.1E+02 0.0038 25.4 10.3 95 108-209 18-126 (130)
99 4h22_A Leucine-rich repeat fli 49.8 67 0.0023 26.4 7.6 59 147-205 24-82 (103)
100 2v66_B Nuclear distribution pr 49.7 1.1E+02 0.0037 25.3 11.2 69 124-196 6-74 (111)
101 3a7p_A Autophagy protein 16; c 49.4 1.1E+02 0.0039 26.6 9.5 21 190-210 98-118 (152)
102 1qu7_A Methyl-accepting chemot 49.1 1.4E+02 0.0048 26.4 12.3 13 63-75 73-85 (227)
103 3fx7_A Putative uncharacterize 49.1 1E+02 0.0035 24.8 8.9 73 130-202 11-84 (94)
104 1i84_S Smooth muscle myosin he 49.0 35 0.0012 37.1 7.6 23 24-46 652-674 (1184)
105 3v86_A De novo design helix; c 48.4 9.8 0.00034 24.2 1.9 23 171-193 4-26 (27)
106 3ol1_A Vimentin; structural ge 47.9 1.1E+02 0.0038 24.8 10.8 72 142-213 30-101 (119)
107 3nmd_A CGMP dependent protein 47.8 55 0.0019 25.3 6.5 50 130-180 15-67 (72)
108 2c5k_T Syntaxin TLG1, T-snare 46.7 66 0.0022 25.5 7.0 25 186-210 66-90 (95)
109 1ses_A Seryl-tRNA synthetase; 46.1 59 0.002 31.6 8.0 65 144-221 33-97 (421)
110 1jcd_A Major outer membrane li 45.6 42 0.0014 24.4 5.2 17 173-189 24-40 (52)
111 2v66_B Nuclear distribution pr 45.3 1.3E+02 0.0044 24.8 9.6 74 148-221 5-82 (111)
112 1n7s_B Syntaxin 1A; neuronal s 45.3 86 0.0029 22.8 7.3 50 173-222 11-64 (68)
113 3qne_A Seryl-tRNA synthetase, 45.3 38 0.0013 34.1 6.6 63 144-210 38-100 (485)
114 1l4a_D S-SNAP25 fusion protein 44.9 49 0.0017 25.6 6.0 38 184-221 47-84 (87)
115 3haj_A Human pacsin2 F-BAR; pa 44.7 1.1E+02 0.0038 29.7 9.8 38 120-157 128-165 (486)
116 1i84_S Smooth muscle myosin he 44.6 69 0.0024 34.8 9.0 6 17-22 586-591 (1184)
117 3hnw_A Uncharacterized protein 43.9 1.2E+02 0.0041 25.4 8.7 47 159-205 88-134 (138)
118 3gp4_A Transcriptional regulat 43.7 80 0.0027 26.0 7.5 29 148-176 83-111 (142)
119 3vkg_A Dynein heavy chain, cyt 43.6 1.2E+02 0.0041 37.3 11.4 57 126-182 2012-2071(3245)
120 3b5n_D Protein transport prote 43.3 88 0.003 23.0 6.9 32 185-216 28-59 (64)
121 3vkg_A Dynein heavy chain, cyt 42.9 95 0.0032 38.1 10.4 39 154-192 2015-2053(3245)
122 1x79_B RAB GTPase binding effe 42.8 1.4E+02 0.0049 24.6 9.0 65 136-200 7-71 (112)
123 1q08_A Zn(II)-responsive regul 42.5 50 0.0017 24.7 5.6 61 150-210 7-75 (99)
124 1fxk_A Prefoldin; archaeal pro 42.2 50 0.0017 25.3 5.6 15 61-75 20-34 (107)
125 3mts_A Histone-lysine N-methyl 41.9 17 0.00059 26.7 2.8 22 106-127 18-39 (64)
126 1l4a_D S-SNAP25 fusion protein 41.7 82 0.0028 24.4 6.8 55 151-205 28-82 (87)
127 2q6q_A Spindle POLE BODY compo 41.6 1.1E+02 0.0036 23.8 7.1 56 148-203 5-60 (74)
128 2nrj_A HBL B protein; enteroto 41.4 1.7E+02 0.0058 27.7 10.2 35 147-181 117-151 (346)
129 1gl2_B Syntaxin 7; membrane pr 41.3 65 0.0022 23.4 5.8 43 174-216 9-51 (65)
130 2xdj_A Uncharacterized protein 41.3 88 0.003 24.4 6.9 54 152-212 5-58 (83)
131 2dq0_A Seryl-tRNA synthetase; 41.1 59 0.002 32.0 7.2 62 144-209 36-97 (455)
132 2c5k_T Syntaxin TLG1, T-snare 40.7 48 0.0016 26.3 5.4 54 121-181 36-89 (95)
133 3ghg_B Fibrinogen beta chain; 40.7 1.6E+02 0.0055 29.7 10.3 35 115-149 82-116 (461)
134 3b5n_B Protein SSO1; snare com 40.7 1E+02 0.0036 22.5 7.9 52 173-224 9-64 (69)
135 2pnv_A Small conductance calci 39.7 51 0.0017 23.1 4.7 30 139-168 9-38 (43)
136 2j69_A Bacterial dynamin-like 39.4 2.1E+02 0.0073 29.2 11.3 79 126-210 594-684 (695)
137 3hd7_A Vesicle-associated memb 39.4 1.2E+02 0.0041 23.5 7.4 23 136-158 6-28 (91)
138 1sum_B Phosphate transport sys 39.3 1.8E+02 0.0062 24.8 9.6 78 123-200 13-107 (235)
139 1wt6_A Myotonin-protein kinase 37.4 1.3E+02 0.0043 23.9 7.2 24 170-193 27-50 (81)
140 2i0m_A Phosphate transport sys 37.4 1.4E+02 0.0048 24.9 8.1 45 123-167 13-57 (216)
141 2dq3_A Seryl-tRNA synthetase; 36.6 58 0.002 31.6 6.3 63 144-210 35-97 (425)
142 3oja_A Leucine-rich immune mol 36.5 32 0.0011 32.8 4.4 58 153-210 414-471 (487)
143 3f6n_A Virion-associated prote 36.3 67 0.0023 27.3 5.8 31 162-192 4-34 (129)
144 2dq0_A Seryl-tRNA synthetase; 35.9 1.8E+02 0.0061 28.6 9.7 87 136-222 10-103 (455)
145 1fxk_A Prefoldin; archaeal pro 35.3 1E+02 0.0034 23.5 6.4 19 123-141 60-78 (107)
146 3ghg_B Fibrinogen beta chain; 35.3 2.5E+02 0.0086 28.3 10.7 11 65-75 19-29 (461)
147 4hpq_C ATG17, KLTH0D15642P; au 35.1 3.2E+02 0.011 26.9 11.3 6 26-31 120-125 (413)
148 3hd7_A Vesicle-associated memb 34.8 1.6E+02 0.0054 22.8 9.6 40 155-194 7-46 (91)
149 3oz2_A Digeranylgeranylglycero 34.7 8.2 0.00028 33.9 0.0 14 9-22 7-20 (397)
150 1xwj_B Talin, metavinculin; ce 34.7 28 0.00096 21.7 2.5 24 122-145 2-25 (26)
151 2zqm_A Prefoldin beta subunit 34.6 1.1E+02 0.0039 23.5 6.7 18 123-140 65-82 (117)
152 1t3j_A Mitofusin 1; coiled coi 34.6 1.2E+02 0.0041 24.5 6.9 21 146-166 47-67 (96)
153 2w83_C C-JUN-amino-terminal ki 34.5 1.7E+02 0.0057 23.0 9.0 9 131-139 33-41 (77)
154 3lss_A Seryl-tRNA synthetase; 34.3 1.2E+02 0.004 30.5 8.2 24 143-166 41-64 (484)
155 3gpv_A Transcriptional regulat 34.2 90 0.0031 25.7 6.3 23 186-208 107-129 (148)
156 4ack_A TSSL; protein transport 34.0 1.1E+02 0.0038 27.5 7.1 65 162-227 7-71 (185)
157 3hd7_B Syntaxin-1A; membrane p 33.6 1.4E+02 0.0049 23.7 7.2 69 164-232 11-83 (109)
158 2d4y_A HAP1, flagellar HOOK-as 33.5 2.7E+02 0.0094 26.7 10.5 59 121-179 64-122 (463)
159 1lwu_C Fibrinogen gamma chain; 32.7 67 0.0023 30.7 5.9 14 190-203 42-55 (323)
160 3e7k_A TRPM7 channel; coiled-c 32.4 1.5E+02 0.0052 21.9 7.1 45 127-175 8-52 (56)
161 1x8y_A Lamin A/C; structural p 32.0 1.7E+02 0.0059 22.4 7.2 59 140-205 15-73 (86)
162 2xz3_A Maltose ABC transporter 31.2 1.2E+02 0.0041 28.6 7.4 64 156-227 360-423 (463)
163 4aj5_A SKA1, spindle and kinet 31.0 2.1E+02 0.0072 23.1 9.9 45 179-227 35-79 (91)
164 4hb9_A Similarities with proba 30.9 10 0.00035 33.6 0.0 13 9-21 4-16 (412)
165 2p22_A Suppressor protein STP2 30.9 1.1E+02 0.0038 26.9 6.6 52 116-167 33-84 (174)
166 3ci9_A Heat shock factor-bindi 30.9 87 0.003 22.4 4.8 38 125-162 6-47 (48)
167 2a01_A Apolipoprotein A-I; fou 30.8 2.4E+02 0.0081 25.1 8.9 34 157-190 92-126 (243)
168 1qu7_A Methyl-accepting chemot 30.8 2.8E+02 0.0095 24.4 11.5 14 62-75 55-68 (227)
169 2ke4_A CDC42-interacting prote 30.2 1.1E+02 0.0038 24.4 5.9 60 148-209 17-76 (98)
170 3edv_A Spectrin beta chain, br 30.1 2.3E+02 0.008 24.8 8.7 89 125-214 163-252 (323)
171 1fzc_A Fibrin; blood coagulati 30.1 49 0.0017 26.5 3.7 28 149-176 3-30 (87)
172 1t72_A Phosphate transport sys 30.0 2.4E+02 0.0083 23.5 9.0 78 123-200 17-111 (227)
173 4g2k_A General control protein 30.0 1.1E+02 0.0038 25.9 6.1 34 172-205 19-52 (125)
174 1go4_E MAD1 (mitotic arrest de 30.0 45 0.0015 27.2 3.6 41 172-212 10-50 (100)
175 3b5n_A Synaptobrevin homolog 1 29.9 1.5E+02 0.0052 21.1 7.1 22 137-158 4-25 (61)
176 3tul_A Cell invasion protein S 29.8 57 0.0019 28.6 4.4 21 192-212 104-124 (158)
177 4ev6_A Magnesium transport pro 29.6 2.9E+02 0.01 25.3 9.6 38 125-162 168-206 (339)
178 1d7m_A Cortexillin I; coiled-c 29.5 2.2E+02 0.0076 23.1 7.6 29 126-154 2-33 (101)
179 3mov_A Lamin-B1; LMNB1, B-type 29.5 2E+02 0.0069 22.7 7.3 69 130-205 14-82 (95)
180 2bsg_A Fibritin; viral protein 29.2 56 0.0019 33.2 4.9 85 124-210 43-130 (487)
181 3swk_A Vimentin; cytoskeleton, 28.4 2E+02 0.007 22.1 10.3 67 145-211 13-79 (86)
182 3plt_A Sphingolipid long chain 28.2 3.6E+02 0.012 24.9 11.8 84 127-214 61-150 (234)
183 3hh0_A Transcriptional regulat 28.1 1.8E+02 0.0063 23.9 7.2 39 184-222 90-128 (146)
184 3c9i_A Tail needle protein GP2 28.1 2.1E+02 0.0073 26.4 8.1 49 160-208 98-146 (242)
185 3qne_A Seryl-tRNA synthetase, 27.7 2.6E+02 0.009 28.0 9.5 87 136-222 14-105 (485)
186 2v71_A Nuclear distribution pr 27.6 3.3E+02 0.011 24.2 14.3 94 133-226 29-133 (189)
187 1mqm_B Hemagglutinin HA2 chain 27.1 17 0.00059 33.3 0.7 55 121-175 36-97 (221)
188 1gk4_A Vimentin; intermediate 27.0 2.1E+02 0.0071 21.8 8.8 42 164-205 30-71 (84)
189 1xwm_A PHOU, phosphate uptake 27.0 2.7E+02 0.0094 23.2 9.4 44 123-166 13-56 (217)
190 1ses_A Seryl-tRNA synthetase; 26.8 3E+02 0.01 26.6 9.4 22 136-157 39-60 (421)
191 2h1e_A Chromo domain protein 1 26.6 48 0.0017 28.8 3.5 27 105-132 48-74 (177)
192 3trt_A Vimentin; cytoskeleton, 26.6 1.9E+02 0.0065 21.2 8.7 37 172-208 40-76 (77)
193 2rft_B Influenza B hemagglutin 26.6 29 0.00098 30.8 2.0 56 121-176 36-98 (176)
194 2l3l_A Tubulin-specific chaper 26.5 2.6E+02 0.0088 22.6 9.7 73 135-209 31-105 (111)
195 3u06_A Protein claret segregat 26.5 1E+02 0.0034 30.1 6.1 32 144-175 8-39 (412)
196 1avo_B 11S regulator; proteaso 26.3 2.9E+02 0.0098 23.3 8.2 83 123-205 5-87 (140)
197 2dfs_A Myosin-5A; myosin-V, in 26.2 5.3E+02 0.018 28.1 12.2 83 126-208 958-1050(1080)
198 2wrg_I Hemagglutinin HA2 chain 26.0 46 0.0016 30.5 3.3 47 121-167 36-89 (222)
199 3l39_A Putative PHOU-like phos 25.9 3.3E+02 0.011 23.7 8.9 76 133-208 99-178 (227)
200 1aq5_A Matrilin-1, CMP, cartil 25.7 1.3E+02 0.0044 21.6 4.9 9 151-159 35-43 (47)
201 1mqs_A SLY1 protein, SLY1P; SM 25.5 2.8E+02 0.0096 28.2 9.4 68 116-183 329-431 (671)
202 2ocy_A RAB guanine nucleotide 25.4 2.6E+02 0.009 24.1 7.9 63 125-187 76-149 (154)
203 3h6p_C ESAT-6-like protein ESX 25.4 66 0.0023 24.0 3.7 34 168-201 54-87 (96)
204 2lw1_A ABC transporter ATP-bin 25.0 2.3E+02 0.0078 21.6 7.7 27 152-178 21-47 (89)
205 3abi_A Putative uncharacterize 25.0 14 0.00047 34.2 -0.3 16 7-23 18-33 (365)
206 3he5_B Synzip2; heterodimeric 24.9 1.2E+02 0.0042 21.7 4.7 35 175-209 11-45 (52)
207 3t37_A Probable dehydrogenase; 24.8 15 0.00053 34.7 0.0 15 9-23 20-34 (526)
208 3cve_A Homer protein homolog 1 24.7 2.4E+02 0.0081 21.6 8.1 55 151-208 5-59 (72)
209 2vkl_A RV0948C/MT0975; helical 24.7 1.9E+02 0.0064 22.3 6.2 52 150-201 16-67 (90)
210 4abm_A Charged multivesicular 24.4 2.4E+02 0.0082 21.6 8.7 64 144-208 11-79 (79)
211 2kvm_A Chromobox protein homol 24.1 33 0.0011 25.6 1.7 25 103-128 29-53 (74)
212 2qyw_A Vesicle transport throu 23.9 2.5E+02 0.0085 22.1 7.0 61 134-194 14-76 (102)
213 3i00_A HIP-I, huntingtin-inter 23.9 98 0.0033 25.6 4.7 44 163-209 11-54 (120)
214 1svf_B Protein (fusion glycopr 23.8 55 0.0019 22.2 2.6 22 133-154 10-31 (38)
215 3kpe_A Fusion glycoprotein F0; 23.7 1.6E+02 0.0056 21.3 5.3 41 158-198 2-42 (51)
216 1l8d_A DNA double-strand break 23.6 2.5E+02 0.0086 21.5 8.9 35 169-203 66-100 (112)
217 1wyy_A E2 glycoprotein; membra 23.6 45 0.0016 29.0 2.7 27 177-203 112-138 (149)
218 1lrz_A FEMA, factor essential 23.5 1.2E+02 0.0042 28.6 6.0 35 118-152 237-271 (426)
219 4abx_A DNA repair protein RECN 23.5 2.3E+02 0.008 23.7 7.2 141 37-193 16-162 (175)
220 1xsv_A Hypothetical UPF0122 pr 23.2 2.7E+02 0.0092 21.7 8.1 34 125-158 43-76 (113)
221 1yvv_A Amine oxidase, flavin-c 23.2 17 0.00059 31.5 0.0 14 9-22 5-18 (336)
222 3s84_A Apolipoprotein A-IV; fo 23.2 4.3E+02 0.015 24.1 11.0 46 145-190 102-148 (273)
223 2fxo_A Myosin heavy chain, car 23.1 3E+02 0.01 22.3 9.2 66 128-193 58-123 (129)
224 1tqg_A Chemotaxis protein CHEA 22.9 2.1E+02 0.0073 21.4 6.2 40 167-208 36-75 (105)
225 1wle_A Seryl-tRNA synthetase; 22.8 4.8E+02 0.017 26.0 10.3 33 189-221 117-149 (501)
226 2z5i_A TM, general control pro 22.8 1.4E+02 0.0047 21.3 4.7 31 149-179 15-45 (52)
227 3i2w_A Syndapin, LD46328P; EFC 22.8 3.9E+02 0.013 23.4 9.7 39 121-159 114-152 (290)
228 1gl2_C VTI1B, vesicle transpor 22.8 2.2E+02 0.0076 20.7 6.2 48 154-201 3-50 (65)
229 4gip_D Fusion glycoprotein F1; 22.7 61 0.0021 32.2 3.7 53 132-195 346-398 (409)
230 2ieq_A S glycoprotein, spike g 22.6 2.7E+02 0.0092 23.1 7.0 101 128-228 1-102 (109)
231 2efr_A General control protein 22.6 3.7E+02 0.013 23.1 10.7 76 125-200 74-152 (155)
232 3r4h_A Coiled coil helix CC-TE 22.6 54 0.0018 21.8 2.3 25 171-195 6-30 (34)
233 1urq_A M-tomosyn isoform; tran 22.5 2.3E+02 0.008 20.8 6.8 30 130-159 6-35 (63)
234 1ez3_A Syntaxin-1A; three heli 22.5 1.4E+02 0.0048 23.2 5.2 16 130-145 14-29 (127)
235 3l4f_A RHO guanine nucleotide 22.5 1.6E+02 0.0053 22.2 5.1 43 170-212 10-52 (61)
236 1lwu_A Fibrinogen alpha-1 chai 22.4 1E+02 0.0035 25.9 4.5 31 149-179 25-59 (119)
237 2iub_A CORA, divalent cation t 22.2 4.7E+02 0.016 24.2 10.1 40 126-165 193-233 (363)
238 1wt6_A Myotonin-protein kinase 22.1 2.9E+02 0.01 21.8 7.9 27 122-148 11-37 (81)
239 2d9u_A Chromobox protein homol 22.1 24 0.00083 26.4 0.6 25 103-128 26-50 (74)
240 1gs9_A Apolipoprotein E, APOE4 22.0 1.1E+02 0.0039 26.1 4.9 11 171-181 103-113 (165)
241 3rkg_A Magnesium transporter M 22.0 2.8E+02 0.0095 25.6 7.9 39 126-166 132-170 (261)
242 3m91_A Proteasome-associated A 22.0 1.6E+02 0.0053 21.2 4.9 31 151-181 14-44 (51)
243 3p8q_A GP5, head protein; viru 22.0 19 0.00065 34.1 0.0 63 138-207 5-67 (385)
244 3m3w_A Pacsin3, protein kinase 21.9 3.5E+02 0.012 24.6 8.5 33 122-154 128-160 (320)
245 3r2p_A Apolipoprotein A-I; amp 21.8 3.6E+02 0.012 22.8 10.4 67 125-191 79-150 (185)
246 4gde_A UDP-galactopyranose mut 21.8 25 0.00086 32.6 0.8 14 9-22 13-26 (513)
247 3qao_A LMO0526 protein, MERR-l 21.7 85 0.0029 28.2 4.3 21 190-210 92-112 (249)
248 2r2v_A GCN4 leucine zipper; co 21.6 1E+02 0.0035 20.8 3.5 26 154-179 2-27 (34)
249 2b9b_A Fusion glycoprotein F0; 21.6 2.1E+02 0.0072 29.1 7.4 22 132-153 427-448 (497)
250 3q0x_A Centriole protein; cent 21.4 2.1E+02 0.0071 26.2 6.8 25 123-147 166-190 (228)
251 3kqg_A Langerin, C-type lectin 21.0 1.2E+02 0.0041 24.5 4.7 19 150-168 3-21 (182)
252 2bni_A General control protein 20.9 99 0.0034 20.9 3.3 28 154-181 2-29 (34)
253 3c98_B Syntaxin-1A; protein co 20.9 3.8E+02 0.013 22.6 8.0 21 128-148 47-67 (279)
254 2b2y_C CHD-1, chromodomain-hel 20.7 36 0.0012 28.3 1.5 23 106-128 60-82 (115)
255 2xv5_A Lamin-A/C; structural p 20.7 2.8E+02 0.0094 21.1 6.3 47 158-204 3-49 (74)
256 1nfn_A Apolipoprotein E3; lipi 20.6 3.1E+02 0.01 23.8 7.5 25 166-190 98-122 (191)
257 3zrx_A AF1503 protein, osmolar 20.6 2.2E+02 0.0076 19.8 9.2 21 166-186 65-85 (115)
258 2l7b_A Apolipoprotein E, APO-E 20.4 1.7E+02 0.0058 27.5 6.2 63 125-187 104-171 (307)
259 3c3f_A Alpha/beta peptide with 20.4 1.1E+02 0.0039 20.6 3.5 28 154-181 2-29 (34)
260 3nmd_A CGMP dependent protein 20.2 1E+02 0.0036 23.8 3.8 41 154-194 27-67 (72)
261 2nrj_A HBL B protein; enteroto 20.2 3.9E+02 0.013 25.2 8.6 15 61-75 62-76 (346)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.15 E-value=0.11 Score=41.63 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=49.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 199 (328)
|||+|-+..-..+. ++|..|.+|...+...+.-|-|.+..=-+++.+++..-..-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998887643221 345555556555555555555555555555555555556666777788888888
Q ss_pred HHHHHHHhh
Q 020255 200 LESKLIEIE 208 (328)
Q Consensus 200 Le~Ki~~ie 208 (328)
+..+||.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888888886
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.20 E-value=1.1 Score=36.68 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=63.6
Q ss_pred HHHHHhH---HHHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 131 asvtKqL---eqVs~sLaaaKrhLsqRId~vD----~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
+.++||| .|..+.+..+|+.|..+|+.+. .|++++.+....++.++..-..+|..+..+++....-=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4677889999999999999865 67788888888889998888888888888888888777777777
Q ss_pred HHHhhh
Q 020255 204 LIEIEG 209 (328)
Q Consensus 204 i~~ie~ 209 (328)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 3
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=89.08 E-value=3 Score=41.91 Aligned_cols=96 Identities=10% Similarity=0.208 Sum_probs=62.5
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 186 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-----~i 186 (328)
+.|+|=-..++....+..|-..|++++..-..++ ++|+..+...+.++.++.+..+.-.+++.+.+.-++ ++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3788888899999999999999999987766655 345666666666555555555554444444443332 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
...+..++..+..|..||..+|.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666654
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.39 E-value=5.4 Score=37.97 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
-|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......++.++++++.++.++.-.-..-++.|-+|-.
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 344555444443335677888888888888877644 44778888899999999999999888888777777766543
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.00 E-value=2.6 Score=40.31 Aligned_cols=66 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
+....+++.++.++.+.|-..++.|.+.++.+++.+++--..++..+.+++..=.-+++-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 445666677788888888888889999999999999888888888888888777777777777775
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=87.94 E-value=5 Score=36.01 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
++.|+..+...+..+.+.++.+-+++..-++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444444444444444333333
No 7
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=87.87 E-value=7.8 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
+...+++++..+...-.++....+.+....+++.+..+.+.+++......+..+...+..
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKE 64 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433333333333
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.12 E-value=4.5 Score=40.01 Aligned_cols=93 Identities=10% Similarity=0.141 Sum_probs=48.0
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs-------~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~ 188 (328)
-++|-=+-|++.+.++.+...|+.++ .-+..++.-|.+|.....+.=+-..|.+..++.....++++|..---
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455556777777777777776653 33444455555555544444444555555555555555554433222
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020255 189 EFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.|..++..|+.+-.||.+||
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.32 E-value=1.5 Score=36.09 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 141 YSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 141 s~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.+.+..+|.+ +...|+++...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444432 3345666666666666555555555555443 23345555555555666555543
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.06 E-value=6.3 Score=40.53 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=63.6
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-------HHHHHHHHHHHHhhhchhhhhh
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-------eis~~i~~eV~~v~~dls~ig~ 188 (328)
-++|-=+-|++.+-++.|-.+|++++.+=..+-....+-.+.+..++.+.. |++.+++..+..++..|.+--.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999987766666666665555555555444 4444445555555555544445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 020255 189 EFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
-+..||..|+.+-.||.++|--
T Consensus 132 nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777788888743
No 11
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.49 E-value=6.2 Score=29.44 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~-sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-....+.|+++++..+....-|+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777777777665433 3445666677788877777777777777777777777777666666666553
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.15 E-value=4.6 Score=36.44 Aligned_cols=55 Identities=4% Similarity=0.090 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhh--hchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 157 SVDRDVNKIVEISQATQEEVTILR--GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 157 ~vD~klDeq~eis~~i~~eV~~v~--~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
+++..+++..+-.+..++....++ .++..+..+++....-...||.+|.++...-
T Consensus 64 ~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 64 KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333332 2334444555555555555555555444443
No 13
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=84.96 E-value=1.9 Score=34.50 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=41.9
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLa-aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 180 (328)
++----+.+...++++.+.++++..... ..|+. .|..++..|||..|+.+++.-||..+-
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333445667777888888887644323 44443 477888899999999999999987763
No 14
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=84.51 E-value=3 Score=33.02 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
..+...++++...|+++...=...|+. -|..++..+||..|+..+|.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888888888876333334443 47778889999999999999999888
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.33 E-value=1.6 Score=36.21 Aligned_cols=70 Identities=7% Similarity=0.291 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 135 RQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 135 KqLeqVs~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
++...-.+.+..+|.+ |..+|++|...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 24 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 24 REVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555556543 4456777777777776666666666655554 33445666666666666666554
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=84.22 E-value=13 Score=32.04 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------HHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 202 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~------------~v~~dls~ig~Dv~~v~~~V~--------~Le~ 202 (328)
-+.+-|++|..+.|+|=.++|+.+.+.+.++++|. .+..|+.....|++.+...+. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 46678889999999999999999999999988874 345555555555555555543 4677
Q ss_pred HHHHhhhhhhhhhHHHHH
Q 020255 203 KLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 203 Ki~~ie~kQd~Tn~GV~~ 220 (328)
-|..|..-|+|=|.==.+
T Consensus 91 EL~~VceEQqfl~~QedL 108 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEEL 108 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777778776654333
No 17
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=83.04 E-value=1.4 Score=35.21 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=45.3
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 180 (328)
|+++----+.+...++.+.+.++++...=...|+. -|..++..|||..|+..+|.-||..+-
T Consensus 4 SelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 4 GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445667788889999998876432334443 377888999999999999999997764
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=82.14 E-value=1.4 Score=29.35 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 183 ls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
++++.+|+.+++.+|+.|..+++++|..-
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999763
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.04 E-value=11 Score=36.73 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD 159 (328)
...+.+.+..+...+++....++..++++..|++...
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3446678888888888888999999999888877766
No 20
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=82.00 E-value=2.6 Score=39.82 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
..|++++++.++....+|+..|+.+++....=..++.+.|.++-..+-.|..+++.|+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778999999888888888877777666666666666665555555555555544
No 21
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=81.72 E-value=3.5 Score=34.56 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=33.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhhc
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~-klDeq~eis~~i~~eV~~v~~d 182 (328)
|++-|.++|.++..+|+.+.+++..+.++=. |- +++. .+..=+.....++++|..++..
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777665432 22 2222 2444445555555555555443
No 22
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=81.55 E-value=21 Score=29.42 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=13.3
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.++..+...+..+..++..+..-+..++..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443333333333333
No 23
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=80.12 E-value=16 Score=27.24 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH------------HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNK------------IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDe------------q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
|+++...+..+...+.+.+++|...++. ..+.....+..+..+..-|..|...+...-..++.-|.++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443 3444555666666666666666666666666666666655
Q ss_pred H
Q 020255 205 I 205 (328)
Q Consensus 205 ~ 205 (328)
.
T Consensus 93 A 93 (98)
T 3gwk_C 93 A 93 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=80.02 E-value=38 Score=31.41 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhcc
Q 020255 216 LGVKKLCDRARELEN 230 (328)
Q Consensus 216 ~GV~~LC~f~~~~~~ 230 (328)
.....|-+.+..++.
T Consensus 283 ~~~~~l~~~a~~L~~ 297 (341)
T 3zx6_A 283 AAAAALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.52 E-value=18 Score=34.33 Aligned_cols=44 Identities=7% Similarity=0.243 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHH------HHHHHHHHHhHhhhhhhHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSI------SAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sL------aaaKrhLsqRId~vD~klDeq~e 167 (328)
....+|++.+.+++++.-+.+ ..+.++|.+.|+++.+++-+...
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 456667776666666554443 34456788888888888765433
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.77 E-value=15 Score=28.99 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=50.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (328)
++.|..|+++..+.+...+-||.+++++-.....+.+.++.-...|+.....+..-|..-...|..|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777778888888888888888877777777777777777777777777766666666666553
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.53 E-value=18 Score=30.50 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
++..+++.+...+++...=....+.|+...+..++....++..++.-+..|+.++..+|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777777778888888888888888888888888888888888888877654
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.04 E-value=16 Score=36.17 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH----HhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT----ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~----~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (328)
+...|..+-|.+..||+.|...|++.....+.+..-+. .++.++.++.+-=..+.+.-+.||.+|.-|..+-+-..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777899999999999999988766666555543 44555566665556677777788888888877755444
Q ss_pred HHHHHH
Q 020255 216 LGVKKL 221 (328)
Q Consensus 216 ~GV~~L 221 (328)
.-|..|
T Consensus 134 ~~ir~L 139 (390)
T 1deq_A 134 QRINLL 139 (390)
T ss_pred HHHHHH
Confidence 433333
No 29
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.01 E-value=20 Score=36.43 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=82.2
Q ss_pred cCCCcCchhhhhhhhHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 020255 111 KGWKLPDMMFATRRSLSDACNSVARQLEDV-------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (328)
Q Consensus 111 KGws~SDlMfVTKRnMsnAvasvtKqLeqV-------s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 183 (328)
-|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....++++|
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999888888877 4557778888888888888888888899999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
.+--.-|..+|..|+.+-.||.++|.-
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765588888888899999999999854
No 30
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=77.98 E-value=44 Score=30.99 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020255 61 LLAEVSSVQ 69 (328)
Q Consensus 61 L~aQV~~La 69 (328)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 31
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=77.91 E-value=12 Score=33.63 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhhc----------hh
Q 020255 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGR----------SK 184 (328)
Q Consensus 124 RnMsnAvasvt--KqLeqVs~sLaaaKrhLsqRI-------d~vD~klDeq~eis~~i~~eV~~v~~d----------ls 184 (328)
|.|.++...++ +.|.+..+.|-.|+.+|.-=+ .++=+.+|.+..++..+.+++..++.. ++
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Confidence 55666665553 334444555666665553322 223334555555555556555555421 11
Q ss_pred hh-------hhHHHHHHHHHHHHHHHHHHhh---hhhhhhhHHHHHHHHHHHhhccCCCccceec
Q 020255 185 LI-------GDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 239 (328)
Q Consensus 185 ~i-------g~Dv~~v~~~V~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (328)
.+ ..=++.+......+...+.+|= .=||+|-+=|......++.++..-..=+...
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~ll~~~ 170 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLEN 170 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1112222222344444444443 3489999999999998888888776665543
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.40 E-value=30 Score=30.23 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 129 AvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+|+.. +.+.+.-..|.....+|..||..++..+.+-....+.++||. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44443 334445566666777777777777776666666655555554 555666667777777776
Q ss_pred h-hhhh
Q 020255 209 G-KQDI 213 (328)
Q Consensus 209 ~-kQd~ 213 (328)
. +++.
T Consensus 124 ~EN~~L 129 (152)
T 3a7p_A 124 KEHSQL 129 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 5 4443
No 33
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=77.23 E-value=27 Score=28.85 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
...++++=+..++.-|-+|++--|.|.| |++....+++|..+=-+++.+++.++-.+.-.|..++..++.
T Consensus 32 ~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 32 IDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677888888888888888866666655 444444444444444455555566655555555555555543
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=75.90 E-value=27 Score=27.53 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
|..=+....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.|+..-+..-.-+-..|..|..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777777788888888888888888888888877777777777777666667777777776
Q ss_pred HHHhhc
Q 020255 224 RARELE 229 (328)
Q Consensus 224 f~~~~~ 229 (328)
-+.-++
T Consensus 94 riqllE 99 (101)
T 3u59_A 94 RIQLVE 99 (101)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 665443
No 35
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=75.69 E-value=7 Score=33.33 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=43.1
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 114 s~SDlMfVTKRnMsnA------vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
+..|.+....+.|..+ .+.+...|+.++..|..+-..|..-.++++-.=+...++.. -...++.=-...|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~----RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEA----RLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH----HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH----HHHHHHHHHHHcC
Confidence 3455555555655532 34455555555555555555555555555432222222221 1122222122334
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 020255 188 DEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555555543
No 36
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=74.81 E-value=8.9 Score=35.43 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=51.1
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
..||..+..++|+..+=+....+.+....-.+.++..||..++.-|..||+|+...|.+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 57999999999999988888888888888888999999999998888888888877765
No 37
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.71 E-value=24 Score=34.83 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 166 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 166 ~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.+-++.+.+|+..+...+.+....+..++.++..++.||..+
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 344444555555555544444455555555555555555444
No 38
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=73.96 E-value=5.8 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
..|++.|..||+.++..+++..+....++++++.+...+.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666655443
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=73.90 E-value=31 Score=34.63 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 141 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
.+.|...++++...|+.|.+++++....+..+.+-|..++..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444455555566666666666665554444444333333333
No 40
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=73.22 E-value=18 Score=26.28 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=42.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
|.+++.++..|++...-|...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5667777777777766666666667777777777766665566778888888887765
No 41
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.18 E-value=22 Score=27.09 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.....|.+.+..++.+...-.....++|..++..+..+..|++....-+.....||..-+
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555666666666666666666666555555555555443
No 42
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.17 E-value=9.6 Score=27.67 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=22.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
++.|..++..++.++..|.+|| +.=..+...|+.++++...+-..++.
T Consensus 11 Ld~L~~~v~~lk~~a~~Ig~El--------------~~Qn~lLd~l~~~~d~~~~~l~~~~~ 58 (65)
T 1gl2_D 11 LDALSSIISRQKQMGQEIGNEL--------------DEQNEIIDDLANLVENTDEKLRTEAR 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555554444 44444444555555554444444443
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.54 E-value=33 Score=27.01 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
|+.++-.+.+..--..|..||..+...+|...+--...+.++.+.....+.--.++.++++-++-||
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444555677777777777777776666666666666666666667777776666555
No 44
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=72.36 E-value=2.9 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=21.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+|.+|-|.|++||..++...+-+...++..
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998877665555444444
No 45
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=72.08 E-value=12 Score=26.51 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=18.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 157 SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 157 ~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
.++.+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333334444444444444444444444433333333
No 46
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=71.53 E-value=27 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020255 129 ACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (328)
Q Consensus 129 AvasvtKqLeqVs~sLaaaKrhLsqRId~v 158 (328)
.+..+++++.+..+.|...-..|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.64 E-value=24 Score=36.31 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH----HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~----i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
+...|-.+-+-|+.||+.|-.++++...-.+. ++..+..++.++.+.++--..+.++-+.||.+|..|+.+-|-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988665554 455566777777777733333444444777777777766443
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.51 E-value=38 Score=26.86 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
=+....-|.+.+..++.+..+-.....+||..++..+..+..|++..+.-+...-.|+..-+..-.-+-..|..|-.-+.
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777788888888888888888888888877777767777666555555556665544443
No 49
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=70.09 E-value=29 Score=25.38 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-----HHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-----EISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-----eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
.+|+++...+..+...|.+.+++|...++... +-.....++..+.+..+.++...++.
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~ 74 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEG 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888888877777777777653 23344444444444444444333333
No 50
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=69.96 E-value=26 Score=25.38 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=25.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (328)
+.++.|..++..++.++..|.+|+ +.=..+...|+.++++...+=..++.-+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El--------------~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEI--------------DTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444544444444 4444555555555555555555554443
No 51
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.83 E-value=18 Score=27.89 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 176 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
|..++.=--.||.+++.=..++..|+.|+++...+=..+|.-+..|
T Consensus 38 v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 38 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555555566666666666666666666665554443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.74 E-value=34 Score=25.96 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (328)
+..+|+.+-...|...+=......++.+..........|+.+++.-+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777778888888888899999999999999998888776644333
No 53
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=69.60 E-value=17 Score=27.64 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (328)
..||.|++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777778888888888777777777776644
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.39 E-value=38 Score=26.36 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHH
Q 020255 130 CNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 130 vasvtKqLeqVs~sLa---aaKrhLsqRId~vD~klDe 164 (328)
...+.+.++++.+.|. .-+..+.++|+.+...++.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544443 3344555556555555544
No 55
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=68.88 E-value=32 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
+|+++...+..+..+|.+.++.|+..++.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 56
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.35 E-value=12 Score=28.87 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=37.6
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
..|.+||+.|..|+--|....+...+.|++-+.. |+.++.-+..|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~-------Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 4577899999999988888888888888766665 56666666666677776664
No 57
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=68.21 E-value=10 Score=28.96 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=40.8
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
..++.|..++..++.++..|.+||.+=-.=|..+..|++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777777777777777777777666666666544
No 58
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=67.41 E-value=8.6 Score=32.06 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
..|++.|..||+.++..+++..+..+.++++++.+...+.
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666555433
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.65 E-value=47 Score=32.68 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=26.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhcc
Q 020255 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (328)
Q Consensus 182 dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (328)
+.+.+.+++..+..++..-|..|..++..-+-.+.-|..|-+-+..+++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556655555444445556666555555543
No 60
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.73 E-value=34 Score=26.37 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
+.-+.++.|...+..++.+...|.+||..=-.=|..|..+++.....+..--.|+..+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556666655555555566666666665555555555544
No 61
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.36 E-value=13 Score=27.00 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 020255 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 185 (328)
-.+|+.++..+...| +++..| ...+++|.++...+.++|......+..
T Consensus 8 D~~Ld~L~~~v~~lk-~~a~~I---g~El~~Qn~lLd~l~~~~d~~~~~l~~ 55 (65)
T 1gl2_D 8 DAGLDALSSIISRQK-QMGQEI---GNELDEQNEIIDDLANLVENTDEKLRT 55 (65)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887654 566554 678999999998888888776665443
No 62
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=65.19 E-value=44 Score=33.12 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=40.1
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT-------SVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId-------~vD~klDeq~eis~~i~~eV~~v~~dls~ig~ 188 (328)
.|+|.==.++..+-+..|-..|++|+.+=+.|+..+..=-+ ...+..|-..+-++.+.+|+.....-+.+...
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444555555555555555555444444332221111 11222344444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020255 189 EFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ 206 (328)
.|..++.++...+.||..
T Consensus 106 ~i~~l~~~~~~~~~~i~~ 123 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVN 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 63
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=63.90 E-value=14 Score=26.44 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~k 161 (328)
|.+.+..+-..+-.+-....++...|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555556678999999999998765
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.63 E-value=82 Score=28.15 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=29.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH----HHHHHHHHHHHHhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR----DIVQTLESKLIEIE 208 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~----~~V~~Le~Ki~~ie 208 (328)
+..||+.+.+++.+.++-.+..++++.++...++.+..++...+ ..+..++..+..+.
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555553322 23344444444443
No 65
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=62.83 E-value=38 Score=25.30 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=38.6
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHHhhcc
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELEN 230 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~~ 230 (328)
.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+.+--+.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~ 70 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666666777777777778888888877 66677788888776653333
No 66
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.59 E-value=31 Score=24.37 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
+++.-.+....-.+++..+++....++++..+-...+++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666666666666666666666666666555443
No 67
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=62.36 E-value=43 Score=24.44 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHH------------HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNKI------------VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDeq------------~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
|+++...+..+..+|.+.++.|+..++.. .+.....+..+..+..-|..|...+.......+.-
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~ 86 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQ 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444432 23333444444444444444444444444333333
No 68
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.27 E-value=24 Score=27.52 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
|.+.+..+-..+-.+-....+++.+|.|||..|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555555555555577999999999999887655
No 69
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=61.07 E-value=46 Score=24.37 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 129 AvasvtKqLeqVs~sLaaaKrhLsqRId~vD~k-----lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
.+..+++++.+..+.|...-..|.+.|+.|... =+...+.....+..+..+..-|..|...+.......+.-|.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777777776322 233334444455555555555555555555555555555544
Q ss_pred H
Q 020255 204 L 204 (328)
Q Consensus 204 i 204 (328)
+
T Consensus 93 ~ 93 (99)
T 3zbh_A 93 I 93 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 70
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=60.63 E-value=35 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHHh
Q 020255 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARE 227 (328)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~ 227 (328)
+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+..-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666667788888888888899999887 66666777777665543
No 71
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.90 E-value=36 Score=26.66 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=34.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
..|++++..|+.+... -..|..||..+...|++..+=+...+.|+ +.+.+.|++||+++
T Consensus 6 ~e~e~~~~klq~~E~r----N~~Le~~v~~le~~Le~s~~~q~~~~~El-----------------k~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 6 AEREETQQKVQDLETR----NAELEHQLRAMERSLEEARAERERARAEV-----------------GRAAQLLDVSLFEL 64 (79)
T ss_dssp ----CTTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhHHHHH
Confidence 3455555555443322 34477777777777777777777776666 34445566666665
Q ss_pred h
Q 020255 208 E 208 (328)
Q Consensus 208 e 208 (328)
.
T Consensus 65 ~ 65 (79)
T 3cvf_A 65 S 65 (79)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.86 E-value=58 Score=35.55 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=6.2
Q ss_pred HhHhhhhhhHHHHHH
Q 020255 153 SKITSVDRDVNKIVE 167 (328)
Q Consensus 153 qRId~vD~klDeq~e 167 (328)
.++..++.++++..+
T Consensus 984 ~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 73
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=57.88 E-value=2.1 Score=33.21 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred eeeEcCcccceeec
Q 020255 9 TFLVGAGILTSVLA 22 (328)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (328)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68899999987654
No 74
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.67 E-value=45 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 170 QATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
..++.||..+|+.++....+++.+++-
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566666666666666666665543
No 75
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=57.65 E-value=55 Score=24.23 Aligned_cols=19 Identities=0% Similarity=0.298 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 020255 158 VDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV 176 (328)
.+.++++..++-..|.+++
T Consensus 60 ~~~~~~~~~~~L~~i~~~L 78 (98)
T 3gwk_C 60 LSPKITEFAQLLEDINQQL 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=57.59 E-value=1e+02 Score=27.22 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
+.+.++...+-+.+-++...|..=|+-.+++=+.. -+...=......|+..++...+..-.|...++..+..||..
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~----~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI----GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443222221111 01111222334455555555566666677777777777766
Q ss_pred HHHhh
Q 020255 204 LIEIE 208 (328)
Q Consensus 204 i~~ie 208 (328)
-..+|
T Consensus 134 ~a~~e 138 (168)
T 3o0z_A 134 KNNLE 138 (168)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65555
No 77
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=57.45 E-value=23 Score=25.42 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq 165 (328)
|..+-.+.|-+=|+|+++-....-..+..|||.+..++|+.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555677777777777777888888888777764
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.37 E-value=39 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 174 (328)
++-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455667777777666654 4455555554
No 79
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=57.22 E-value=1.2e+02 Score=29.94 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------------------hhhhhhHHHHHHHHHHHH
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------------------SKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d------------------ls~ig~Dv~~v~~~V~~L 200 (328)
.+.+.|....+.....|+.|...|++....+..+.+-|..++.. .+.+-+++..+..++...
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777788888888888888888877777777777666653 223555666666667777
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHhhcc
Q 020255 201 ESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (328)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (328)
+..|..++..-+.-+.-|..|-+-+..++.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666667777666665544
No 80
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.94 E-value=49 Score=33.60 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=33.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
-=.+|-.||.-++.++|.+..-....|..|...+.++.++..||..
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888888888877777777777777766666666553
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.53 E-value=73 Score=25.23 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++-++-|
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444444444333333344444444444333
No 82
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.36 E-value=1.1e+02 Score=27.30 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=63.8
Q ss_pred hhhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH----HHHhhhchhhhhhHHHHHH
Q 020255 122 TRRSLSDACNS---VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 122 TKRnMsnAvas---vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e----V~~v~~dls~ig~Dv~~v~ 194 (328)
++..+.++.++ +-+-||.==+.....-++|..++.++...+++.+.=-+..+.+ ++.++.++.......+.++
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 2233333344455666778888888888888876666666666 7777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020255 195 DIVQTLESKLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (328)
.-+..||-+=|.+|.+--++..-+..
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 77777777777777665555544433
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.22 E-value=72 Score=25.12 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHH-------hhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 020255 161 DVNKIVEISQATQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (328)
Q Consensus 161 klDeq~eis~~i~~eV~~-------v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 206 (328)
.+++-++-.....+++.+ +.....+...+....+.-+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444444444444444 5556666666666666666666666543
No 84
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=55.87 E-value=66 Score=24.57 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ei 168 (328)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566667777777777777777777777766655
No 85
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.86 E-value=58 Score=25.08 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
..|..||..+...|++...=+...+.|+.-+.+.+.-=-+|+..++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4466777777777777777777777666655554444444444444
No 86
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=55.00 E-value=65 Score=27.40 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=53.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (328)
.||+.+..+|.+.+.+.+.......++...+..+..|++.--.-+...|.|+..++..=.....-+.-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777888888888888889999999999999999999999999999888765544443333
No 87
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=54.96 E-value=54 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhH
Q 020255 166 VEISQATQEEVTILRGRSKLIGDE 189 (328)
Q Consensus 166 ~eis~~i~~eV~~v~~dls~ig~D 189 (328)
..++.++++-++.++.-++.+..+
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~~~ 88 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMSEQ 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHhhHHHcChHHHHHHHHHHHHHh
Confidence 345555555555555555444433
No 88
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=54.63 E-value=53 Score=23.70 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 184 (328)
.-.+|++++..|...| +++.. ....+++|.++...+.++|..+...+.
T Consensus 8 qD~~Ld~L~~~v~~lk-~la~~---ig~El~~Qn~~Ld~l~~~~d~~~~~l~ 55 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLR-HMALD---MGNEIDTQNRQIDRIMEKADSNKTRID 55 (66)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3457888888777654 45554 467888999888888888766655543
No 89
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=54.56 E-value=41 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klDe 164 (328)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 90
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=54.35 E-value=77 Score=24.89 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=40.7
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVA---RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 124 RnMsnAvasvt---KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+ .+..++.+++++-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34555555553 34444566788899999998887766433 2345577888888888
Q ss_pred HHHHHHhhh
Q 020255 201 ESKLIEIEG 209 (328)
Q Consensus 201 e~Ki~~ie~ 209 (328)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888887774
No 91
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.20 E-value=63 Score=29.77 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 165 IVEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 165 q~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
..+++.+++.+|.+.+.++.-.++|++
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 345668888888888888888777774
No 92
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=53.81 E-value=70 Score=24.24 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 226 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~ 226 (328)
=.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|..+.+
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666777777788888889999877 5566677777766553
No 93
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=53.27 E-value=57 Score=24.53 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHH------------HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 137 LEDVYSSISAAQRQLSSKITSVDRDVN------------KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~vD~klD------------eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
|++....+.....+|.+.|+.|+..++ ...+....-+..+.++..-|..|..-+.........-|
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d 88 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRAD 88 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555544443 23344444444444455444444444444444443333
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=52.51 E-value=68 Score=25.08 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 174 (328)
...|..=|.++-.+|++-...=...|.+|.+=++.+|-|+++..++-..+..
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4457778888888888888888888899999999999999999888777654
No 95
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=51.73 E-value=59 Score=23.92 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=21.0
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
-.++|......++.....-..=++.+..||.|+.+.+
T Consensus 25 l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 25 LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3344544444444443333333777888888877765
No 96
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=50.95 E-value=77 Score=26.08 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 020255 188 DEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
..++.++.+...|+.||+..+
T Consensus 95 ~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 95 NRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.62 E-value=30 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|..|+..|..+++++
T Consensus 25 l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 25 VVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 98
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=49.90 E-value=1.1e+02 Score=25.40 Aligned_cols=95 Identities=14% Similarity=0.267 Sum_probs=59.0
Q ss_pred EEecCCCcCchhhhhhhhHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 108 VWWKGWKLPDMMFATRRSLSDACNSVARQLEDV-----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 108 mwWKGws~SDlMfVTKRnMsnAvasvtKqLeqV-----------s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
.+.-+-+.-|=+|+-|.-..++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+=
T Consensus 18 ~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 18 LYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 344566677999998888888887776655542 124677888888888888888888877766554332
Q ss_pred HHhhhchhhhh---hHHHHHHHHHHHHHHHHHHhhh
Q 020255 177 TILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 177 ~~v~~dls~ig---~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
+.|+ .|+..=++.|..++.+|..|+.
T Consensus 98 -------~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 98 -------GKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp -------HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 2355556667777777777664
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.81 E-value=67 Score=26.42 Aligned_cols=59 Identities=3% Similarity=-0.013 Sum_probs=45.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
=|--|.=.||.|-++|+++.|.-.+++.|-.+-..+++........++.-+..|...|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999888887777666666666655555555443
No 100
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.67 E-value=1.1e+02 Score=25.26 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 196 (328)
|.|...++.+..-+|+.-+-+...++.-..-|..|.+.+++..+.-..++..+ ++|++-.+|++-=.++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i----ReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHH
Confidence 34556666666677777777777777777777777666666555444444433 5666667776655444
No 101
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.37 E-value=1.1e+02 Score=26.55 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 020255 190 FQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~k 210 (328)
++.+++-...|--.+..+|.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 102
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=49.14 E-value=1.4e+02 Score=26.36 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcC
Q 020255 63 AEVSSVQQELSHV 75 (328)
Q Consensus 63 aQV~~LaqElr~L 75 (328)
.-|+..+.+-..|
T Consensus 73 ~~I~~IA~QTNLL 85 (227)
T 1qu7_A 73 SVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 103
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=49.06 E-value=1e+02 Score=24.82 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=54.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD-~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
+...+++|++.-+.|...=..|..+.++|+ +.=++.....+..++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 5555556666666666666666666666667777766665554
No 104
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=49.00 E-value=35 Score=37.12 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=11.9
Q ss_pred CCCCcchhhhhhhHHHHHHHhhh
Q 020255 24 EGRLSSVSDAVGGTLKIVSKLIK 46 (328)
Q Consensus 24 nGkLsDv~~~lsGalk~l~K~lk 46 (328)
.|+.+-+...+..-|..|++.|.
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l~ 674 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTLR 674 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455566555566666666554
No 105
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=48.36 E-value=9.8 Score=24.24 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHH
Q 020255 171 ATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888888776666666543
No 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.91 E-value=1.1e+02 Score=24.80 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020255 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (328)
Q Consensus 142 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (328)
+.+..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..+..|++...-.-..||.|+..+..-=+|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666665555421111111123345566667777887777777899999888765443
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.83 E-value=55 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILR 180 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~ 180 (328)
.++|++ +.++.++|...-.+|.+ ||+.++..|++-.+..+..+.++...+
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555 77777777776655544 577777777777766666666664443
No 108
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=46.66 E-value=66 Score=25.45 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 186 IGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
-..||..=+..|..++.+|..|..+
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888888877654
No 109
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.14 E-value=59 Score=31.58 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
+-..+|.+..+++.+.. +.++++++|.. . -+.|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 33 ~~~~~r~~~~~~~~l~~---~~n~~sk~i~~---~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 33 LDREVQELKKRLQEVQT---ERNQVAKRVPK---A-------PPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHSSS---S-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHh---h-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556555555544 34455555542 1 112334444444444444444444444333334333
No 110
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.56 E-value=42 Score=24.37 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=7.0
Q ss_pred HHHHHHhhhchhhhhhH
Q 020255 173 QEEVTILRGRSKLIGDE 189 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~D 189 (328)
..+|..++.|+....+|
T Consensus 24 ssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=45.34 E-value=1.3e+02 Score=24.83 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=51.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~----eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
-+.|..+..++.-.+|+.+.=-++-+. .++.++.++......-+.++.-++.||-+=|.+|-..-.|..-+-.+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 355666666666666555544444443 36777888888888889999999999999998888777776655443
No 112
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=45.28 E-value=86 Score=22.80 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=32.7
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh----hhhhHHHHHHH
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ----DITTLGVKKLC 222 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ----d~Tn~GV~~LC 222 (328)
.+++..+..++..++.=+..+..+|..=+..|++||++- +++..|...|-
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666667777777877788889998874 44445555543
No 113
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.26 E-value=38 Score=34.08 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
|-..+|.+..+++.+..+ .++++++|..- ....+|.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~---rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKK---LNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766654 44455555432 1223444455555555555555555555555543
No 114
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=44.88 E-value=49 Score=25.64 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
..||.+++.=..++..++.|+++...+-..+|.-+..|
T Consensus 47 ~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 47 IDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777776666666555443
No 115
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=44.70 E-value=1.1e+02 Score=29.68 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q 020255 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (328)
Q Consensus 120 fVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~ 157 (328)
|-.||.+.+....+-|.+......|..+|+..-++-..
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888999999999999888665443
No 116
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.62 E-value=69 Score=34.84 Aligned_cols=6 Identities=17% Similarity=-0.125 Sum_probs=2.3
Q ss_pred cceeec
Q 020255 17 LTSVLA 22 (328)
Q Consensus 17 ~GSVl~ 22 (328)
+|.|.+
T Consensus 586 ag~V~Y 591 (1184)
T 1i84_S 586 AGKVTY 591 (1184)
T ss_dssp SCEEEE
T ss_pred CceEEe
Confidence 334433
No 117
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.95 E-value=1.2e+02 Score=25.41 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 159 D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+..+.+.+.=....+.+..++...++....+++.++.-+..||.++.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444445555556666666666666654
No 118
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.68 E-value=80 Score=25.99 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=13.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+.-|..+++.++.++++..++.+.++..+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 119
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.62 E-value=1.2e+02 Score=37.30 Aligned_cols=57 Identities=5% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhL---sqRId~vD~klDeq~eis~~i~~eV~~v~~d 182 (328)
+.++++..-++|+...+.|++++..| ..+|+.+.++.++..+=.+.+++|+...+.+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444433 2444444444444444444445555444444
No 120
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=43.27 E-value=88 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 020255 185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
.+|.++++=+..+..++.|.+.+..+=..++.
T Consensus 28 ~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~ 59 (64)
T 3b5n_D 28 TTGKELDSQQKRLNNIEESTDDLDINLHMNTN 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555444443
No 121
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.87 E-value=95 Score=38.13 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=17.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
+++.+..++++.++--+..++++.++.+.+.....+.+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 122
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.77 E-value=1.4e+02 Score=24.64 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
+.+++..-+..+++.|+.=.+--++=-|..++-.+..+.+|.++...+.+-...+..+++.+...
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444455666677777888888877777777777777665544
No 123
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=42.46 E-value=50 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH--------HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQ--------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~--------~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
++..++..++=.|++.+++...-. +-...++..+..+...++.++.+...|+.++...+..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566667777777777765421 2234455566667777777777777788877777654
No 124
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.15 E-value=50 Score=25.26 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
+..|+..|..+++++
T Consensus 20 l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 20 ISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 125
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=41.94 E-value=17 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.7
Q ss_pred eeEEecCCCcCchhhhhhhhHH
Q 020255 106 GYVWWKGWKLPDMMFATRRSLS 127 (328)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnMs 127 (328)
-++.|||+.-+|-.|-...||.
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEecCCCcCCcEeEHHHCC
Confidence 4689999999999999999994
No 126
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=41.74 E-value=82 Score=24.36 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.-+-++.|...+..++.+...|.+|+..=-.=|..|..+++.+..-+..--.|+.
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444444444555544444443333333
No 127
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=41.57 E-value=1.1e+02 Score=23.85 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=28.9
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
-|+|...++.-++.+|..+-|.++.+-.+..--+=-....++....+.....||.|
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 45666666666666666666666666555433333333334444444444444433
No 128
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=41.38 E-value=1.7e+02 Score=27.69 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 147 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
.|..|...|+.|-..+.+..+-.+.+.+++..-+.
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~ 151 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD 151 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555544444444444444333
No 129
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.34 E-value=65 Score=23.38 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 020255 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (328)
Q Consensus 174 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (328)
+++..+..++..++.=+..+..+|..=+..|++||++-+-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666777788888888899999987554443
No 130
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.31 E-value=88 Score=24.38 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
.+|++++...++......-.+..++ +....||..++-.++.+..+|..+...|-
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql-------~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQL-------SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566655444443333333444444 44444555555555555566666655553
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.12 E-value=59 Score=32.02 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666544 44555655531 111234444444455555444455555554443
No 132
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=40.73 E-value=48 Score=26.27 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
-++.-+.+.|..+.-.|+.+.+||...++. =...++.=+...+.++.++..++.
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-------~~~EI~~Rk~~v~~l~~~i~~lk~ 89 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-------ENEDVSGREAQVKNIKQQLDALKL 89 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999986655 222333334444444444444443
No 133
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.68 E-value=1.6e+02 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.9
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 020255 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (328)
Q Consensus 115 ~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKr 149 (328)
+.|+|.==.++..+-+..|-..|++++.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 56888888888888888888888888766555543
No 134
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.65 E-value=1e+02 Score=22.46 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHH
Q 020255 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDR 224 (328)
Q Consensus 173 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f 224 (328)
.+++..+..++..++.=+..+..+|..=+..|++||++ ++.+..|...|-.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666777777788788888898877 45555566655443
No 135
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.67 E-value=51 Score=23.12 Aligned_cols=30 Identities=10% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 020255 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (328)
Q Consensus 139 qVs~sLaaaKrhLsqRId~vD~klDeq~ei 168 (328)
.+-+.+.+-...|..||..++.|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888999999999999987664
No 136
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=39.41 E-value=2.1e+02 Score=29.16 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHHHHH------------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 020255 126 LSDACNSVARQLEDVY------------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 126 MsnAvasvtKqLeqVs------------~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
..++-..+-+++.++. +....-++++.+|++. ++..+..++++=+..-+..-.++..+.+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l 667 (695)
T 2j69_A 594 VKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRIND------DIVSRKSELDNLVKQKQTREINRESEFNRL 667 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444555666665544 3333444444444432 233334444444555555666677777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 020255 194 RDIVQTLESKLIEIEGK 210 (328)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k 210 (328)
+.+..+.-.+|..++..
T Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 668 KNLQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 77666677777777653
No 137
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=39.36 E-value=1.2e+02 Score=23.49 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 020255 136 QLEDVYSSISAAQRQLSSKITSV 158 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~v 158 (328)
.|.++.+.|..+|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 138
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=39.31 E-value=1.8e+02 Score=24.82 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-----------------HHHhhhchhh
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-----------------VTILRGRSKL 185 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e-----------------V~~v~~dls~ 185 (328)
++.+..-+.-+.++|+...++|..-...+.++|...|+++|....-...---. +..+-.|+++
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlER 92 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIEN 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677777777777666677888888888777654432211111 1233356666
Q ss_pred hhhHHHHHHHHHHHH
Q 020255 186 IGDEFQSVRDIVQTL 200 (328)
Q Consensus 186 ig~Dv~~v~~~V~~L 200 (328)
||+-..+|-..+..+
T Consensus 93 IgD~a~~Ia~~~~~~ 107 (235)
T 1sum_B 93 IADKCHDIAKNVLEL 107 (235)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666655554444
No 139
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.39 E-value=1.3e+02 Score=23.85 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHH
Q 020255 170 QATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
+.|.+|++.++.+.-.+.++++.-
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~ea 50 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREA 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 140
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=37.35 E-value=1.4e+02 Score=24.94 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
|+.+..-+.-+.++|+...+++..-...+.++|...|+++|+...
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~ 57 (216)
T 2i0m_A 13 EQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQS 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHH
Confidence 455566666667777777777766566777888888877776543
No 141
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.64 E-value=58 Score=31.64 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666676666666544 45556665431 1112455666666777776666677777666654
No 142
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.55 E-value=32 Score=32.78 Aligned_cols=58 Identities=3% Similarity=0.096 Sum_probs=28.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 153 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
+++++......+..+....++.++.+.++.++++..+-+.++...+.++.+|.+...+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 3333333333333333334555555555555566555556665555555555554433
No 143
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=36.29 E-value=67 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 020255 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (328)
Q Consensus 162 lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 192 (328)
|.+.+++++++.++|..+..++++|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566677777777777777777777777766
No 144
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.93 E-value=1.8e+02 Score=28.60 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHH-H---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 136 QLEDVYSSISAAQR-Q---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 136 qLeqVs~sLaaaKr-h---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+.|.|-++++.=.- . +-.+|-.+|.+-.+...-.+.++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|
T Consensus 10 n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89 (455)
T ss_dssp CHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 45555555543211 1 2345555555555555555555555555544443 235677888888888999999888
Q ss_pred hhhhhhhHHHHHHH
Q 020255 209 GKQDITTLGVKKLC 222 (328)
Q Consensus 209 ~kQd~Tn~GV~~LC 222 (328)
....-...-+..+.
T Consensus 90 ~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 90 NEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776666653
No 145
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.29 E-value=1e+02 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHhHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVY 141 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs 141 (328)
++...+|...+.+..+.+.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 3456666666655555444
No 146
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=35.29 E-value=2.5e+02 Score=28.30 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 020255 65 VSSVQQELSHV 75 (328)
Q Consensus 65 V~~LaqElr~L 75 (328)
+.+=++|.-.+
T Consensus 19 ~~~~~~~~~~~ 29 (461)
T 3ghg_B 19 LDKKREEAPSL 29 (461)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 34444444433
No 147
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=35.10 E-value=3.2e+02 Score=26.86 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=3.3
Q ss_pred CCcchh
Q 020255 26 RLSSVS 31 (328)
Q Consensus 26 kLsDv~ 31 (328)
.|.||+
T Consensus 120 ~L~DFI 125 (413)
T 4hpq_C 120 KLGDFI 125 (413)
T ss_dssp TTTTSS
T ss_pred cHHHHc
Confidence 366654
No 148
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=34.85 E-value=1.6e+02 Score=22.82 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=15.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 155 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
|+.+..++||.+.+-..--++|-+=.+.++.+.+--+.++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3444444444444443333344333333333333333333
No 149
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=34.69 E-value=8.2 Score=33.86 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 020255 9 TFLVGAGILTSVLA 22 (328)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (328)
+|+||||++|..++
T Consensus 7 ViIVGaGpaGl~~A 20 (397)
T 3oz2_A 7 VLVVGGGPGGSTAA 20 (397)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68999999987543
No 150
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=34.66 E-value=28 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSIS 145 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLa 145 (328)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988877663
No 151
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.62 E-value=1.1e+02 Score=23.50 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHhHHHH
Q 020255 123 RRSLSDACNSVARQLEDV 140 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqV 140 (328)
++...+|...+.+..+.+
T Consensus 65 ~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETL 82 (117)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 345555555544444433
No 152
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.60 E-value=1.2e+02 Score=24.50 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=10.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHH
Q 020255 146 AAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 146 aaKrhLsqRId~vD~klDeq~ 166 (328)
.++++|...|++++.+++...
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433
No 153
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.52 E-value=1.7e+02 Score=23.00 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHhHHH
Q 020255 131 NSVARQLED 139 (328)
Q Consensus 131 asvtKqLeq 139 (328)
+++=+.+|+
T Consensus 33 ~DLI~rvdE 41 (77)
T 2w83_C 33 NDLIAKVDE 41 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 154
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.31 E-value=1.2e+02 Score=30.49 Aligned_cols=24 Identities=8% Similarity=-0.026 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 143 SISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 143 sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
+|-..+|.+..+++.+..+.++..
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~s 64 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINICS 64 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888877776555433
No 155
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.20 E-value=90 Score=25.75 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 020255 186 IGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+...++.++.+...|+.||+..+
T Consensus 107 l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 107 VLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555444
No 156
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=33.98 E-value=1.1e+02 Score=27.46 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 020255 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (328)
Q Consensus 162 lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (328)
++-..+|.+.|++-+.+-+-|-++|..-=.+|+++|..+-.+|.. ...+..--.-++.+|.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888889988888999999988888887 77777777888999998864
No 157
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=33.64 E-value=1.4e+02 Score=23.68 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhHHHHHHHHHHHhhccCC
Q 020255 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELENGR 232 (328)
Q Consensus 164 eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~~~~ 232 (328)
+.-.-.++=.+|+..+..++.+++.=+..+..+|..=+.-|++||++ ++....|...|-.+.+--++++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r 83 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 158
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.46 E-value=2.7e+02 Score=26.73 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
+.|..+-..-..++.++.++++.|...++.+...|+.--++++...+-+..+.+++..+
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777777777777776655555554444444444555443
No 159
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.75 E-value=67 Score=30.68 Aligned_cols=14 Identities=0% Similarity=0.145 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 020255 190 FQSVRDIVQTLESK 203 (328)
Q Consensus 190 v~~v~~~V~~Le~K 203 (328)
|+.+++.|..|+.+
T Consensus 42 i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 42 VTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444433
No 160
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=32.38 E-value=1.5e+02 Score=21.92 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
++=++.|.-+|+.|.+-+...|+.| ..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHH
Confidence 4558889999999999999998854 57888988888888876553
No 161
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.98 E-value=1.7e+02 Score=22.41 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 140 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+-.+|+.+..++...++ +..........++..++.|+...-.|-+.+-++=..||--|.
T Consensus 15 Le~~l~e~E~~~~~~l~-------~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERD-------TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555554444333 344444455667777777777777777776666666665553
No 162
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=31.23 E-value=1.2e+02 Score=28.62 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 020255 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (328)
Q Consensus 156 d~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (328)
+.+++=.++.+++.++-.+++ +.....|++.+...|.+|+..|.++..=----.+|+.+| |++.
T Consensus 360 eal~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 423 (463)
T 2xz3_A 360 AALAAAQTNAAALSHQRLTSL------IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL--YIRL 423 (463)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH--HHHh
No 163
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.98 E-value=2.1e+02 Score=23.06 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=36.4
Q ss_pred hhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 020255 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (328)
Q Consensus 179 v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (328)
.+.-+..||+|+=.|+.....||--+. .|.-++.-..-||.+.++
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334578899999999988888877664 588899999999998864
No 164
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.91 E-value=10 Score=33.61 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=10.3
Q ss_pred eeeEcCcccceee
Q 020255 9 TFLVGAGILTSVL 21 (328)
Q Consensus 9 ~ILvGAG~~GSVl 21 (328)
++|||||++|..+
T Consensus 4 V~IVGaGpaGl~~ 16 (412)
T 4hb9_A 4 VGIIGAGIGGTCL 16 (412)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5788999998653
No 165
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.86 E-value=1.1e+02 Score=26.92 Aligned_cols=52 Identities=6% Similarity=0.213 Sum_probs=30.9
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 116 SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 167 (328)
-|.+|.+--.|.++...-...|..=.+.|...+..|.++.+.|...++...+
T Consensus 33 ~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 33 ADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555555666666666655555555555544
No 166
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=30.86 E-value=87 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhH----HHHHHHHHHHHHHHHHhHhhhhhhH
Q 020255 125 SLSDACNSVARQL----EDVYSSISAAQRQLSSKITSVDRDV 162 (328)
Q Consensus 125 nMsnAvasvtKqL----eqVs~sLaaaKrhLsqRId~vD~kl 162 (328)
-|..+|..+=.|| +.+|+.|-.-=..++.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3555555554444 5677777777788899998887765
No 167
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=30.76 E-value=2.4e+02 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=16.6
Q ss_pred hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 157 SVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 157 ~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
.+-.+|.-- .|+...+.+++.++|..++-+..++
T Consensus 92 e~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444433 2345555555555555555554444
No 168
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=30.75 E-value=2.8e+02 Score=24.41 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhcC
Q 020255 62 LAEVSSVQQELSHV 75 (328)
Q Consensus 62 ~aQV~~LaqElr~L 75 (328)
..+++.|.+..+++
T Consensus 55 ~~~~~~l~~~s~~I 68 (227)
T 1qu7_A 55 VQTMRDISTSSQKI 68 (227)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 169
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.21 E-value=1.1e+02 Score=24.43 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=26.7
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 148 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
|+.|.++|+.+...+++-..-.+.+.+=...-.. =.++| |-.++..-......||+.+..
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-nP~~G-D~~s~~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-TPQMG-DPASLEPQIAETLSNIERLKL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-CGGGC-CGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555544443333332222111 13344 444444434444444444443
No 170
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=30.14 E-value=2.3e+02 Score=24.78 Aligned_cols=89 Identities=4% Similarity=0.064 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaa-aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
....-|..+...-+++.+.-.. ...++..|++.|..+-+...+....-+..+.+.. ++.+|..+++.+..-+...+..
T Consensus 163 ~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~ 241 (323)
T 3edv_A 163 ALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQ 241 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhh
Q 020255 204 LIEIEGKQDIT 214 (328)
Q Consensus 204 i~~ie~kQd~T 214 (328)
|...+...|.+
T Consensus 242 l~~~~~~~d~~ 252 (323)
T 3edv_A 242 IEAQEKPRDVS 252 (323)
T ss_dssp HHTCCCCCSHH
T ss_pred HhCCcCCCCHH
No 171
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=30.10 E-value=49 Score=26.54 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=14.8
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
..|-.||+.+..|+++|.......++.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988888887766555444444
No 172
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=30.05 E-value=2.4e+02 Score=23.54 Aligned_cols=78 Identities=9% Similarity=0.181 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH-----HHH------HH------HHHhhhchhh
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ-----ATQ------EE------VTILRGRSKL 185 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~-----~i~------~e------V~~v~~dls~ 185 (328)
++.+..-+..+.+.|+.+.+++..-...+..+|...|+++|+...-.. .+. .+ +..+-.++++
T Consensus 17 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lER 96 (227)
T 1t72_A 17 KEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLER 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 445555556666667777777765556677777777777776532211 111 01 1224456666
Q ss_pred hhhHHHHHHHHHHHH
Q 020255 186 IGDEFQSVRDIVQTL 200 (328)
Q Consensus 186 ig~Dv~~v~~~V~~L 200 (328)
||+-..+|-..+..+
T Consensus 97 IgD~a~nIa~~~~~~ 111 (227)
T 1t72_A 97 MGDEAENIAERAILL 111 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666665555444
No 173
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=30.02 E-value=1.1e+02 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=13.7
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+.|.|.++-.++-.+..++..++..|..|+..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 19 IEDKIEEILSKIYHIENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444443333
No 174
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.02 E-value=45 Score=27.19 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
+.++++.++..++....+-+.+.+-+..||.+|....-..|
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd 50 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGD 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66799999999999999999999999999999987543333
No 175
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=29.91 E-value=1.5e+02 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 020255 137 LEDVYSSISAAQRQLSSKITSV 158 (328)
Q Consensus 137 LeqVs~sLaaaKrhLsqRId~v 158 (328)
|.+|...|..+|.-+..-|+.|
T Consensus 4 l~~vq~~l~evk~iM~~NI~~v 25 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKV 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 176
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=29.83 E-value=57 Score=28.62 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 020255 192 SVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd 212 (328)
+.+..+..+.+-+.+...+++
T Consensus 104 k~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 104 QAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444
No 177
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.58 E-value=2.9e+02 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhH
Q 020255 125 SLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDV 162 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLa-aaKrhLsqRId~vD~kl 162 (328)
+..+.+..+.++++++.+.+- ..+++...||-.+.+++
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l 206 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTL 206 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 444555566666666555432 12333444444444443
No 178
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.55 E-value=2.2e+02 Score=23.11 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHh
Q 020255 126 LSDACNSVARQLED---VYSSISAAQRQLSSK 154 (328)
Q Consensus 126 MsnAvasvtKqLeq---Vs~sLaaaKrhLsqR 154 (328)
|+|-.+++-..|+. -.+.|...|++|..-
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~ 33 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 44555555444443 234455555554433
No 179
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.49 E-value=2e+02 Score=22.69 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
.+++-++...+-..|+.++.++...++..... ......++..++.|+..--.|-+.+-.+-..||-.|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~-------i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRM-------LTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556666666555554444443 3445556666666666666666666666666665543
No 180
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=29.20 E-value=56 Score=33.18 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 124 RnMsnAvasvtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 456677777888888888888888777766 4444444444322222 33445555555666666666666666666
Q ss_pred HHHHHHhhhh
Q 020255 201 ESKLIEIEGK 210 (328)
Q Consensus 201 e~Ki~~ie~k 210 (328)
..++++|+..
T Consensus 121 ~~~~~ei~~d 130 (487)
T 2bsg_A 121 NNTVDSILAD 130 (487)
T ss_pred ccchHHHHhh
Confidence 6666666644
No 181
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.41 E-value=2e+02 Score=22.13 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=38.3
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020255 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (328)
..-|-.|..-|+|+-.-+++.+.=-+.=...=+.+-.|+..+..|++...-.-..||.||+++..--
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444433222211122234445556666678888888889999999886543
No 182
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=28.22 E-value=3.6e+02 Score=24.85 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH------HHHHH
Q 020255 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 200 (328)
Q Consensus 127 snAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~------~V~~L 200 (328)
.+++.+|+-.|-.+...+..+..++.++++..-..|-..- .+.+.|...|..=..+.++|..++. -+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR----~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIR----NIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 5788888888888888888888888888777666554433 3334455556655666666666663 46678
Q ss_pred HHHHHHhhhhhhhh
Q 020255 201 ESKLIEIEGKQDIT 214 (328)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (328)
|..|.+.|...-.+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 88777766554444
No 183
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.15 E-value=1.8e+02 Score=23.87 Aligned_cols=39 Identities=3% Similarity=0.143 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 020255 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (328)
Q Consensus 184 s~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (328)
+.+...++.++.+...|+.++..++......+.-...|.
T Consensus 90 ~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li 128 (146)
T 3hh0_A 90 EVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFL 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 344455666777777777777777776666655555554
No 184
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=28.08 E-value=2.1e+02 Score=26.41 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 160 ~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
.++-...+-....+-.++.+.+|+....-++..+...|.+.|.+|+.|+
T Consensus 98 ~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 98 SRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 3344444444444555566666666666666666666666666666665
No 185
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.69 E-value=2.6e+02 Score=28.00 Aligned_cols=87 Identities=10% Similarity=0.039 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020255 136 QLEDVYSSISAAQR--QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 136 qLeqVs~sLaaaKr--hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (328)
..|.|-++++.=.. .+-.+|-.+|.+--+...-.++++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|..
T Consensus 14 n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 14 DPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp CHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555542111 13456666666666655556666666555555443 34667888888899999999999988
Q ss_pred hhhhhHHHHHHH
Q 020255 211 QDITTLGVKKLC 222 (328)
Q Consensus 211 Qd~Tn~GV~~LC 222 (328)
..-...-+..++
T Consensus 94 ~~~~~~~~~~~l 105 (485)
T 3qne_A 94 EAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666553
No 186
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.58 E-value=3.3e+02 Score=24.24 Aligned_cols=94 Identities=14% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----------hhhhHHHHHHHHHHHHH
Q 020255 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----------LIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-----------~ig~Dv~~v~~~V~~Le 201 (328)
+-.-|+.+.++=..-..+|-.-|+....+.-+...-....+.|+...+.++. .+..++..++.....|-
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444434444445555555555555555555555555444444333 33444555555566666
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHH
Q 020255 202 SKLIEIEGKQDITTLGVKKLCDRAR 226 (328)
Q Consensus 202 ~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (328)
.+|-.+|-..|--..-...+|.-++
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 6666666665555555555554443
No 187
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=27.06 E-value=17 Score=33.26 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~-------sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
+-+++-..|.+.+++.|..+.+ ++...=.+|-+||++|++|+|+...=.-.-..|
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaE 97 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 97 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 5578889999999999988843 455555678899999999999875433333333
No 188
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.03 E-value=2.1e+02 Score=21.76 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 020255 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (328)
Q Consensus 164 eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 205 (328)
+..........++..++.|+...-.|-+.+-++=..||--|.
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444445566666666666666666666666566665543
No 189
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.01 E-value=2.7e+02 Score=23.16 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
++.+..-+.-+.+.|+...+++..--..+..+|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (217)
T 1xwm_A 13 HNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALE 56 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHH
Confidence 44555566667777777778887766778888888888887664
No 190
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.80 E-value=3e+02 Score=26.65 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhh
Q 020255 136 QLEDVYSSISAAQRQLSSKITS 157 (328)
Q Consensus 136 qLeqVs~sLaaaKrhLsqRId~ 157 (328)
.+.+-.+.|.+-+..+++.|..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566666666666654
No 191
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=26.59 E-value=48 Score=28.75 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.5
Q ss_pred eeeEEecCCCcCchhhhhhhhHHHHHHH
Q 020255 105 YGYVWWKGWKLPDMMFATRRSLSDACNS 132 (328)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnMsnAvas 132 (328)
--|+.|||+|--+--|+|-.+|.+ |..
T Consensus 48 EYlVKWKg~Sy~HnTWe~ee~L~~-~~g 74 (177)
T 2h1e_A 48 EFLIKWTDESHLHNTWETYESIGQ-VRG 74 (177)
T ss_dssp EEEEEETTSCGGGCEEECHHHHCS-CTT
T ss_pred EEEEEECCCccccCeecCHHHHhh-chH
Confidence 447889999999999999999975 443
No 192
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.58 E-value=1.9e+02 Score=21.15 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.5
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 172 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
++..|..-..++.....++..++..+..|+..|+.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555667777889999999999999988764
No 193
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=26.56 E-value=29 Score=30.85 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~s-------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 176 (328)
+-+++-.+|...++..|..+.+. +...=.++-+||.+|++++|+...=.-.-..|+
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~DvwsynaEL 98 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISSQIEL 98 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 56788899999999999888542 333344888999999999998764333333443
No 194
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=26.51 E-value=2.6e+02 Score=22.63 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=57.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 135 RQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 135 KqLeqVs~sLaaaKrhLsqRId~v--D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
...+..+.....-+..+..+|+.. -+.+|++.+-+..+++.|++.-.-|- -+|+..-+..+..|..++++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888766 55688888888888999988877554 47899999999999999887653
No 195
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.49 E-value=1e+02 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i~~e 175 (328)
|...-++|.+|++.++.+..++.+..+..+++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555554444444444433
No 196
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=26.34 E-value=2.9e+02 Score=23.30 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 202 (328)
...+-...+.+-..+.++.+.+..-|.-++-+|-+..+==+==.++++.+-+++++++.....+.+.+..-+..-..+..
T Consensus 5 N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~ 84 (140)
T 1avo_B 5 NEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVT 84 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888877766666668899999999999999999998888888877777777
Q ss_pred HHH
Q 020255 203 KLI 205 (328)
Q Consensus 203 Ki~ 205 (328)
|+.
T Consensus 85 K~~ 87 (140)
T 1avo_B 85 KAA 87 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 197
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.19 E-value=5.3e+02 Score=28.11 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHHHHHHH------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh----hhchhhhhhHHHHHHH
Q 020255 126 LSDACNSVARQLEDVYSS------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL----RGRSKLIGDEFQSVRD 195 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~s------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v----~~dls~ig~Dv~~v~~ 195 (328)
+.+-|+.+-+.++.+... +..--+.|...|+.++.++++...-.+.++++.... ++.++++..+...+++
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444443322 223346777888888887777666555555554444 4444555555555555
Q ss_pred HHHHHHHHHHHhh
Q 020255 196 IVQTLESKLIEIE 208 (328)
Q Consensus 196 ~V~~Le~Ki~~ie 208 (328)
-+..||..+...+
T Consensus 1038 q~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1038 EKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555655554443
No 198
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=26.02 E-value=46 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHH
Q 020255 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVE 167 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~s-------LaaaKrhLsqRId~vD~klDeq~e 167 (328)
+-+++-..|.+.++..|..|.+. +...=.++-+||++|++++|+...
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~ 89 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFL 89 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55688899999999999888653 444455788999999999998764
No 199
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=25.94 E-value=3.3e+02 Score=23.68 Aligned_cols=76 Identities=8% Similarity=0.176 Sum_probs=42.6
Q ss_pred HHHhHHHHHHHHHHHHHHHH-HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH---HHHHHHHHHHHHhh
Q 020255 133 VARQLEDVYSSISAAQRQLS-SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR---DIVQTLESKLIEIE 208 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLs-qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~---~~V~~Le~Ki~~ie 208 (328)
+...||.|-+.+..+=+.+. -+++.++..+.++.++....-+++.++=..+.+++.|.+.+. .-|..+|.+.|.+.
T Consensus 99 L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l~ 178 (227)
T 3l39_A 99 LASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVY 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544443 344555666666666655555555555555555543544444 34777788777765
No 200
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=25.69 E-value=1.3e+02 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.564 Sum_probs=3.9
Q ss_pred HHHhHhhhh
Q 020255 151 LSSKITSVD 159 (328)
Q Consensus 151 LsqRId~vD 159 (328)
+++|++.++
T Consensus 35 vt~rle~lE 43 (47)
T 1aq5_A 35 VAKRIEALE 43 (47)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 201
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=25.49 E-value=2.8e+02 Score=28.16 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=53.1
Q ss_pred Cchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHH-----------------------------HHHHhHhhhhhhHHH
Q 020255 116 PDMMFATRR--SLSDACNSVARQLEDVYSSISAAQR-----------------------------QLSSKITSVDRDVNK 164 (328)
Q Consensus 116 SDlMfVTKR--nMsnAvasvtKqLeqVs~sLaaaKr-----------------------------hLsqRId~vD~klDe 164 (328)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999887 7899999999999988887654332 556777778888888
Q ss_pred HHHHHHHHHH----HHHHhhhch
Q 020255 165 IVEISQATQE----EVTILRGRS 183 (328)
Q Consensus 165 q~eis~~i~~----eV~~v~~dl 183 (328)
+.+|.+.+++ ++.++..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Confidence 8888888875 577777776
No 202
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.40 E-value=2.6e+02 Score=24.14 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 020255 125 SLSDACNSVARQLEDVYSSI--------SAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sL--------aaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 187 (328)
.....++.+.+-||.++.+| +.||+. +..|.+.|...+.+-..+....+++|.+++.=+.++.
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555544 333332 4555666666666666666666666655555444443
No 203
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=25.36 E-value=66 Score=23.99 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 168 is~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
...+-.....+++.-|..|+.-++..+.....-|
T Consensus 54 ~~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d 87 (96)
T 3h6p_C 54 WQTQWNQALEDLVRAYQSMSGTHESNTMAMLARD 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333
No 204
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.04 E-value=2.3e+02 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=17.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020255 152 SSKITSVDRDVNKIVEISQATQEEVTI 178 (328)
Q Consensus 152 sqRId~vD~klDeq~eis~~i~~eV~~ 178 (328)
...++.+..++++..+-...+..++..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345667777777766666666666654
No 205
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.04 E-value=14 Score=34.15 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=12.2
Q ss_pred ceeeeEcCcccceeecc
Q 020255 7 KLTFLVGAGILTSVLAK 23 (328)
Q Consensus 7 Kv~ILvGAG~~GSVl~k 23 (328)
||+|| |||++|+.+++
T Consensus 18 kilvl-GaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLIL-GAGNIGRAIAW 33 (365)
T ss_dssp EEEEE-CCSHHHHHHHH
T ss_pred EEEEE-CCCHHHHHHHH
Confidence 55555 99999998764
No 206
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.90 E-value=1.2e+02 Score=21.68 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=20.1
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 175 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
.+..++.|--++..|-+++..++..|...|.++|.
T Consensus 11 kiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 11 KIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 33334444445555666666666666666666664
No 207
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=24.82 E-value=15 Score=34.69 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.5
Q ss_pred eeeEcCcccceeecc
Q 020255 9 TFLVGAGILTSVLAK 23 (328)
Q Consensus 9 ~ILvGAG~~GSVl~k 23 (328)
+|+||+|.+|+|++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999885
No 208
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.70 E-value=2.4e+02 Score=21.64 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+++|++.+..+=.+..+-....++++.+-+..=++...+ ++.+.+.|++||+++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E---lk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN---LKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Confidence 344444444444443333333344443333333333332 2334455666666554
No 209
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=24.65 E-value=1.9e+02 Score=22.30 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 150 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
+|-++||.+|.+|=+.-+-=-.+-++|.+++..-..--.|-+--++++..+.
T Consensus 16 ~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~ 67 (90)
T 2vkl_A 16 TLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYS 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHH
Confidence 5777899999999888777777788888888643333344444454444443
No 210
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.38 E-value=2.4e+02 Score=21.56 Aligned_cols=64 Identities=13% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 144 ISAAQRQLSSKITSVDRDVNKIVEISQAT-----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 144 LaaaKrhLsqRId~vD~klDeq~eis~~i-----~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
|..+..-|.++...++.+++++.++.+.- +.-...++.+ ......++.+.....+||.-+..||
T Consensus 11 Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrK-K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 11 LRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRK-KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455556666666666666666665531 1112223322 3344455566666666666555554
No 211
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=24.07 E-value=33 Score=25.61 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=21.2
Q ss_pred hheeeEEecCCCcCchhhhhhhhHHH
Q 020255 103 VGYGYVWWKGWKLPDMMFATRRSLSD 128 (328)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKRnMsn 128 (328)
+=| ++.|||++-+|--|....||.+
T Consensus 29 ~~Y-lVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 29 VEY-LVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp EEE-EEEETTSCGGGCEEEETTTCSC
T ss_pred EEE-EEEEcCCCCccCeEeeHHHCCC
Confidence 335 7899999999999999999974
No 212
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.93 E-value=2.5e+02 Score=22.06 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 134 ARQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 134 tKqLeqVs~sLaaaKrhLsqRId~vD~--klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
+.-++.--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444454445555555666666666522 2266677777888888888888887777777654
No 213
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.86 E-value=98 Score=25.64 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020255 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (328)
Q Consensus 163 Deq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (328)
|+-..++...+.||..++..++.| ...-+..|..|.++|..+|+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 214
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=23.79 E-value=55 Score=22.15 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh
Q 020255 133 VARQLEDVYSSISAAQRQLSSK 154 (328)
Q Consensus 133 vtKqLeqVs~sLaaaKrhLsqR 154 (328)
++.+|.++..+|.+|+.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999998887653
No 215
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.72 E-value=1.6e+02 Score=21.28 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 020255 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 198 (328)
|+.++...++-.+.|.+-|.++...++.+.-=++.+|+-+.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666667777777777777766776665543
No 216
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.63 E-value=2.5e+02 Score=21.55 Aligned_cols=35 Identities=3% Similarity=0.009 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 169 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
...+++++.+++..+..+...+..+..-+..|+.+
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333333333333
No 217
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=23.63 E-value=45 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=12.3
Q ss_pred HHhhhchhhhhhHHHHHHHHHHHHHHH
Q 020255 177 TILRGRSKLIGDEFQSVRDIVQTLESK 203 (328)
Q Consensus 177 ~~v~~dls~ig~Dv~~v~~~V~~Le~K 203 (328)
+++.-...++...++.++..+..|-.-
T Consensus 112 ~~Le~s~~~L~k~~~eLq~~IdnlN~T 138 (149)
T 1wyy_A 112 SGINASVVNIQKEIDRLNEVAKNLNES 138 (149)
T ss_dssp TTCCCCCCCCHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333334444555555555554443
No 218
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.55 E-value=1.2e+02 Score=28.63 Aligned_cols=35 Identities=3% Similarity=0.113 Sum_probs=24.5
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020255 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (328)
Q Consensus 118 lMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLs 152 (328)
.+|+.+=|+.+..+.+.++++++...++..++.|.
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555667777777888887777777777765553
No 219
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.52 E-value=2.3e+02 Score=23.71 Aligned_cols=141 Identities=9% Similarity=0.086 Sum_probs=80.0
Q ss_pred HHHHHHHhhhcCCCCCCCccchHHHHHHHHHHHH--HHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecCC
Q 020255 37 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQ--ELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGW 113 (328)
Q Consensus 37 alk~l~K~lk~~d~s~s~s~~~~dL~aQV~~Laq--Elr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGw 113 (328)
.+++.+.-+++-++.|+ ....|.++.++|.+ +|+.. ..-...++++ .+|..-.+..++..+.-
T Consensus 16 ~L~~ql~El~~~~l~~g---E~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~---e~~~~~~L~~a~~~L~~-------- 81 (175)
T 4abx_A 16 LLAFQVQEISEVSPDPG---EEEGLNTELSRLSNLHTIAQAAAGGVELLSDG---DLNAAGLIGEAVRALNA-------- 81 (175)
T ss_dssp HHHHHHHHHHHHCCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCCCCCC---hHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCC---cchHHHHHHHHHHHHHH--------
Confidence 44555555665555553 12228888888866 34443 3333344433 12222222222222210
Q ss_pred CcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 114 s~SDlMfVTKRnMsnAvasvtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
++++ .-.=..+.+.+.++--+|+.++..|...-.++. .|++.|..+|+....+.+--...+.++-.-..++..++
T Consensus 82 -l~~~-d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL 159 (175)
T 4abx_A 82 -GAKY-DETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEEL 159 (175)
T ss_dssp -HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred -HHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000 112346888888888999999999988777773 68899999999888888766544544444444444444
Q ss_pred HHH
Q 020255 191 QSV 193 (328)
Q Consensus 191 ~~v 193 (328)
..+
T Consensus 160 ~~l 162 (175)
T 4abx_A 160 AGL 162 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 220
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.20 E-value=2.7e+02 Score=21.71 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~v 158 (328)
+..+....++-....|+..+..|+++|...+...
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777888888999999998887654
No 221
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=23.19 E-value=17 Score=31.54 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.7
Q ss_pred eeeEcCcccceeec
Q 020255 9 TFLVGAGILTSVLA 22 (328)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (328)
+++||||++|..++
T Consensus 5 V~IIGaG~~Gl~~A 18 (336)
T 1yvv_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 68999999987664
No 222
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=23.19 E-value=4.3e+02 Score=24.13 Aligned_cols=46 Identities=9% Similarity=0.129 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 145 SAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 145 aaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
...|..+.++++.+-.+|.-. .++...+...+.+++..+.-.-.|+
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~ 148 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDT 148 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444555555555555555432 3444555555666665554444433
No 223
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.09 E-value=3e+02 Score=22.27 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 193 (328)
.|-.....-.+...+.|.+.|..|..+|..+..++++..+.......+=..+..+++....|++..
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=22.88 E-value=2.1e+02 Score=21.44 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020255 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (328)
Q Consensus 167 eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (328)
+....+...+..+++.-..+|. ..+..+...+|.-++.+.
T Consensus 36 ~~~~~l~r~~HtLKGsa~~~G~--~~l~~la~~lE~~l~~~r 75 (105)
T 1tqg_A 36 ELINEAFRALHTLKGMAGTMGF--SSMAKLCHTLENILDKAR 75 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHhcCh--HHHHHHHHHHHHHHHHHH
Confidence 3444555556666665555553 356666666666665544
No 225
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.84 E-value=4.8e+02 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 020255 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (328)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (328)
|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666655555555444
No 226
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.83 E-value=1.4e+02 Score=21.31 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 149 RQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis~~i~~eV~~v 179 (328)
..|...||+|.++|...++--+.|.+++.-.
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4577888999999888888888888777543
No 227
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=22.82 E-value=3.9e+02 Score=23.43 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 121 VTKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD 159 (328)
-.||.+.+....+.|.+...+..+..+|+..-++-...+
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~ 152 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTER 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888889999999999998876655433
No 228
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=22.82 E-value=2.2e+02 Score=20.65 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=21.3
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 201 (328)
|+++=.++|+++..+...|.+-=..+-.+|..=++-+...+..+...+
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d 50 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTN 50 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHH
Confidence 444444555555555555544444444444444444444443333333
No 229
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=22.73 E-value=61 Score=32.19 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 132 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
+++..|..|..+|..|+++| |+...+-+.+++++.++-.++-.|..|+..++.
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~~ 398 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIKK 398 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC-----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777665 444444445555555555555555555555543
No 230
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=22.62 E-value=2.7e+02 Score=23.10 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH-HHHHHHHHHHHHHHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF-QSVRDIVQTLESKLIE 206 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv-~~v~~~V~~Le~Ki~~ 206 (328)
.|..+++.-+..|..+|..+.+-++-==..+.+=.|=..++.+.+.+=+....-....+..++ +-+++.--.|=.+|+.
T Consensus 1 ~a~~nit~a~~~~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~ 80 (109)
T 2ieq_A 1 KAINNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQ 80 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHhh
Q 020255 207 IEGKQDITTLGVKKLCDRAREL 228 (328)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~ 228 (328)
+|.+-+--..=...|-+++..+
T Consensus 81 LEa~A~~l~~~~~elq~~idn~ 102 (109)
T 2ieq_A 81 LEAKTASLFQTTVELQGLIDQI 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 231
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.58 E-value=3.7e+02 Score=23.12 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKr---hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 200 (328)
...+-+..++.+|...-..-..|-| .|..-||++.++|+..++--+.|.+++...-.++..|..++..+..-|..|
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 232
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.56 E-value=54 Score=21.80 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHH
Q 020255 171 ATQEEVTILRGRSKLIGDEFQSVRD 195 (328)
Q Consensus 171 ~i~~eV~~v~~dls~ig~Dv~~v~~ 195 (328)
.|+.|+..++..+..|.+++..|++
T Consensus 6 aikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777777788888777663
No 233
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.55 E-value=2.3e+02 Score=20.78 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020255 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (328)
Q Consensus 130 vasvtKqLeqVs~sLaaaKrhLsqRId~vD 159 (328)
.+.|-.|++.|.+.+..+...+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888877766554
No 234
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=22.49 E-value=1.4e+02 Score=23.25 Aligned_cols=16 Identities=0% Similarity=0.237 Sum_probs=6.8
Q ss_pred HHHHHHhHHHHHHHHH
Q 020255 130 CNSVARQLEDVYSSIS 145 (328)
Q Consensus 130 vasvtKqLeqVs~sLa 145 (328)
|..+-..|+.+...+.
T Consensus 14 v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 235
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.49 E-value=1.6e+02 Score=22.23 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020255 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (328)
Q Consensus 170 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (328)
=++++||.+++.+......=++..+.+-..||.-+-.+-..+|
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4568888888888888888888888888888876666655544
No 236
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=22.42 E-value=1e+02 Score=25.92 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=19.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHH----HHHHHHHHHh
Q 020255 149 RQLSSKITSVDRDVNKIVEIS----QATQEEVTIL 179 (328)
Q Consensus 149 rhLsqRId~vD~klDeq~eis----~~i~~eV~~v 179 (328)
..|-.||+.|..|+++|.... ..|+++|.++
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveM 59 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQI 59 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678887777777766554 4555555443
No 237
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.20 E-value=4.7e+02 Score=24.16 Aligned_cols=40 Identities=3% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKI 165 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaa-KrhLsqRId~vD~klDeq 165 (328)
..+.+..+.+.+|.+.+.+-.. ++....||-.+.+++-..
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~l 233 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVEL 233 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 3344444555555554444321 223334444444444333
No 238
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.11 E-value=2.9e+02 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQ 148 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaK 148 (328)
+++||..|..+==+-=+-+++.|..+|
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr 37 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIR 37 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777887776653333333444444444
No 239
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.10 E-value=24 Score=26.41 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=21.6
Q ss_pred hheeeEEecCCCcCchhhhhhhhHHH
Q 020255 103 VGYGYVWWKGWKLPDMMFATRRSLSD 128 (328)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKRnMsn 128 (328)
+=| ++.|||++-.|--|....||.+
T Consensus 26 ~~Y-lVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 26 LEY-LVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEE-EEEETTSCTTTCEEEEGGGCCC
T ss_pred EEE-EEEECCCCCccCccccHHHCCC
Confidence 345 8999999999999999999986
No 240
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=22.03 E-value=1.1e+02 Score=26.12 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.0
Q ss_pred HHHHHHHHhhh
Q 020255 171 ATQEEVTILRG 181 (328)
Q Consensus 171 ~i~~eV~~v~~ 181 (328)
.+..++.++|.
T Consensus 103 ~L~~d~EelR~ 113 (165)
T 1gs9_A 103 RLGADMEDVRG 113 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 241
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=21.99 E-value=2.8e+02 Score=25.55 Aligned_cols=39 Identities=3% Similarity=0.095 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020255 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (328)
Q Consensus 126 MsnAvasvtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 166 (328)
|..+|+.+...+..+......+-++|..+|++ .+|....
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~Ll 170 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHLL 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 55677777777777888777888888877765 4555443
No 242
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.98 E-value=1.6e+02 Score=21.21 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 151 LSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 151 LsqRId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
|..+++.+..+=....+.-+.-++++..+++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433334444444444433333
No 243
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=21.97 E-value=19 Score=34.10 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020255 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (328)
Q Consensus 138 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 207 (328)
.++.++|..+-+++.+.-|.--.++++-.++...++++| .++..+++.++.-+..||.|+.+.
T Consensus 5 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 5 ALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 334444444444444433333333333344455555555 455556666666666667776655
No 244
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=21.92 E-value=3.5e+02 Score=24.65 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020255 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (328)
Q Consensus 122 TKRnMsnAvasvtKqLeqVs~sLaaaKrhLsqR 154 (328)
.+|.+.+...-+.|++.+.+..|..+|+..-++
T Consensus 128 e~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~ 160 (320)
T 3m3w_A 128 ASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888889999999999999887664
No 245
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=21.85 E-value=3.6e+02 Score=22.77 Aligned_cols=67 Identities=12% Similarity=0.309 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHH
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLS----SKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQ 191 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLs----qRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~ 191 (328)
......+.+.|.|+.+...|.--..++. +.++.+-.+|.=. .++.+.++.++.++|..|.-+.+++.
T Consensus 79 ~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr 150 (185)
T 3r2p_A 79 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR 150 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667777778777766665555544 4444454444432 45666677778888888887777764
No 246
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=21.76 E-value=25 Score=32.61 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 020255 9 TFLVGAGILTSVLA 22 (328)
Q Consensus 9 ~ILvGAG~~GSVl~ 22 (328)
+|+||||++|-..+
T Consensus 13 VvIIGaGisGLsaA 26 (513)
T 4gde_A 13 VLVIGAGPTGLGAA 26 (513)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 78999999886543
No 247
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=21.74 E-value=85 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 020255 190 FQSVRDIVQTLESKLIEIEGK 210 (328)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~k 210 (328)
++.++.++..|+.+|..++.+
T Consensus 92 ~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 92 KQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444444443
No 248
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.63 E-value=1e+02 Score=20.84 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=12.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTIL 179 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v 179 (328)
|...|.+|+++...=-....+||..+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555444444444444443
No 249
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=21.62 E-value=2.1e+02 Score=29.12 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 020255 132 SVARQLEDVYSSISAAQRQLSS 153 (328)
Q Consensus 132 svtKqLeqVs~sLaaaKrhLsq 153 (328)
+++.+|.+|-.+|..++.||.+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~ 448 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQ 448 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999988754
No 250
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.45 E-value=2.1e+02 Score=26.18 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH
Q 020255 123 RRSLSDACNSVARQLEDVYSSISAA 147 (328)
Q Consensus 123 KRnMsnAvasvtKqLeqVs~sLaaa 147 (328)
|+.++.-.+.+-+.+.++...|..+
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~ 190 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRT 190 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433443333333333333333
No 251
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.97 E-value=1.2e+02 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=4.4
Q ss_pred HHHHhHhhhhhhHHHHHHH
Q 020255 150 QLSSKITSVDRDVNKIVEI 168 (328)
Q Consensus 150 hLsqRId~vD~klDeq~ei 168 (328)
+|+..|+.+...+++...+
T Consensus 3 ~l~~~~~~l~~~~~~~~~l 21 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASAL 21 (182)
T ss_dssp ----------CHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 3455555555555544433
No 252
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.94 E-value=99 Score=20.92 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=16.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
|...+.+|+++...--..+.+||..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4555666666666666666666655543
No 253
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.93 E-value=3.8e+02 Score=22.59 Aligned_cols=21 Identities=0% Similarity=0.246 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 020255 128 DACNSVARQLEDVYSSISAAQ 148 (328)
Q Consensus 128 nAvasvtKqLeqVs~sLaaaK 148 (328)
+-|..+...+++++..+...+
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~ 67 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVK 67 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555443
No 254
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=20.75 E-value=36 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.6
Q ss_pred eeEEecCCCcCchhhhhhhhHHH
Q 020255 106 GYVWWKGWKLPDMMFATRRSLSD 128 (328)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnMsn 128 (328)
-++.|||||..+=-|-+..||..
T Consensus 60 YlVKWkG~s~~~nTWEp~enL~~ 82 (115)
T 2b2y_C 60 YLIKWKGWSHIHNTWETEETLKQ 82 (115)
T ss_dssp EEEEETTSCGGGCEEECHHHHHH
T ss_pred EEEEECCCCchhcccCCHHHcCC
Confidence 47999999999999999999875
No 255
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.66 E-value=2.8e+02 Score=21.08 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 020255 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (328)
Q Consensus 158 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 204 (328)
++...++..++......++..++.|+...-.|-+.+-++=..||-.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666677766666666666655555555444
No 256
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.64 E-value=3.1e+02 Score=23.78 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHH
Q 020255 166 VEISQATQEEVTILRGRSKLIGDEF 190 (328)
Q Consensus 166 ~eis~~i~~eV~~v~~dls~ig~Dv 190 (328)
.++.+.++.++.++|..|+-+..|+
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444456666666666666555554
No 257
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=20.60 E-value=2.2e+02 Score=19.80 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 020255 166 VEISQATQEEVTILRGRSKLI 186 (328)
Q Consensus 166 ~eis~~i~~eV~~v~~dls~i 186 (328)
..++..++.-++.+...++.+
T Consensus 65 ~~~shel~~~l~~i~~~~~~l 85 (115)
T 3zrx_A 65 AGVSHDLRTPLTRIRLATEMM 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444443
No 258
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=20.43 E-value=1.7e+02 Score=27.48 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh----hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhh
Q 020255 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKIT----SVDRDVNKI-VEISQATQEEVTILRGRSKLIG 187 (328)
Q Consensus 125 nMsnAvasvtKqLeqVs~sLaaaKrhLsqRId----~vD~klDeq-~eis~~i~~eV~~v~~dls~ig 187 (328)
.....-+.+.+.++.+-.-|.-=...|..+++ .+-.+|.-. .|+...++.++.++|..|.-+.
T Consensus 104 ~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~ 171 (307)
T 2l7b_A 104 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ 171 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34444455555666555555444443433332 333333322 2444555556666666664333
No 259
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.37 E-value=1.1e+02 Score=20.62 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=16.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~ 181 (328)
|...+.+|+++...--...++||..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455566666665555566666655443
No 260
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.25 E-value=1e+02 Score=23.76 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=20.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 020255 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (328)
Q Consensus 154 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 194 (328)
=++.-+.+|.+..++++....++.+-...+.++...++.++
T Consensus 27 ~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 27 ALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444445555555555555555454455555555444
No 261
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.17 E-value=3.9e+02 Score=25.19 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhcC
Q 020255 61 LLAEVSSVQQELSHV 75 (328)
Q Consensus 61 L~aQV~~LaqElr~L 75 (328)
|...+-...+..|.+
T Consensus 62 l~~~i~~~~~~ak~h 76 (346)
T 2nrj_A 62 LPGRIVQDQKNARAH 76 (346)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
Done!