Query 020256
Match_columns 328
No_of_seqs 282 out of 1216
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11272 putative DMT superfam 99.9 1.6E-20 3.4E-25 178.0 24.4 183 126-312 9-198 (292)
2 PRK11689 aromatic amino acid e 99.9 3.7E-20 8E-25 175.8 21.0 162 124-286 3-182 (295)
3 PRK11453 O-acetylserine/cystei 99.8 3.5E-19 7.5E-24 169.4 24.5 178 127-307 6-190 (299)
4 PRK15430 putative chlorampheni 99.8 4.5E-19 9.9E-24 168.4 23.8 180 122-306 5-194 (296)
5 TIGR00688 rarD rarD protein. T 99.8 9.7E-19 2.1E-23 162.3 22.7 156 125-284 2-170 (256)
6 PLN00411 nodulin MtN21 family 99.8 9.6E-19 2.1E-23 171.1 23.2 188 122-311 10-238 (358)
7 TIGR00950 2A78 Carboxylate/Ami 99.8 3.1E-18 6.7E-23 158.0 21.3 175 137-313 1-180 (260)
8 PRK10532 threonine and homoser 99.8 1.6E-17 3.5E-22 157.6 23.9 182 122-312 9-196 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.7 3.6E-16 7.7E-21 148.5 22.9 171 142-313 19-197 (302)
10 PTZ00343 triose or hexose phos 99.7 3.7E-15 7.9E-20 145.4 26.3 176 138-313 62-251 (350)
11 COG0697 RhaT Permeases of the 99.6 4.9E-13 1.1E-17 123.5 24.1 174 123-300 5-191 (292)
12 TIGR03340 phn_DUF6 phosphonate 99.6 2.3E-13 4.9E-18 128.3 21.6 174 127-302 3-187 (281)
13 PF06027 DUF914: Eukaryotic pr 99.4 3.5E-11 7.5E-16 116.8 22.2 184 134-321 22-226 (334)
14 TIGR00776 RhaT RhaT L-rhamnose 99.4 8.7E-11 1.9E-15 111.8 20.4 178 126-308 2-198 (290)
15 PF00892 EamA: EamA-like trans 99.4 1.1E-11 2.3E-16 100.7 11.8 117 135-252 1-125 (126)
16 COG2510 Predicted membrane pro 99.3 1E-11 2.2E-16 103.8 10.7 127 126-252 4-138 (140)
17 COG5006 rhtA Threonine/homoser 99.3 4.5E-10 9.7E-15 103.8 18.7 181 126-314 13-199 (292)
18 COG2962 RarD Predicted permeas 99.2 2.5E-09 5.3E-14 100.8 21.1 173 123-304 5-187 (293)
19 KOG4510 Permease of the drug/m 99.1 2.6E-11 5.6E-16 112.8 3.3 164 122-287 35-218 (346)
20 PF13536 EmrE: Multidrug resis 99.1 2.9E-09 6.3E-14 87.4 12.2 97 158-255 2-108 (113)
21 TIGR00950 2A78 Carboxylate/Ami 99.1 1E-08 2.3E-13 94.4 17.3 125 124-248 127-259 (260)
22 KOG2765 Predicted membrane pro 99.0 4.6E-09 1E-13 101.8 13.7 140 183-322 160-310 (416)
23 PRK10532 threonine and homoser 98.7 6.2E-07 1.3E-11 85.2 17.2 128 124-252 147-280 (293)
24 PRK11689 aromatic amino acid e 98.7 5.2E-07 1.1E-11 85.8 16.2 127 124-253 155-287 (295)
25 PF08449 UAA: UAA transporter 98.7 4.9E-06 1.1E-10 79.5 22.4 160 152-312 31-205 (303)
26 PRK11272 putative DMT superfam 98.6 1.4E-06 3E-11 82.7 16.7 129 124-253 149-285 (292)
27 PLN00411 nodulin MtN21 family 98.6 1.4E-06 3.1E-11 85.6 16.2 131 124-254 188-329 (358)
28 PF04142 Nuc_sug_transp: Nucle 98.5 7.9E-06 1.7E-10 76.3 16.9 131 179-310 14-163 (244)
29 PRK11453 O-acetylserine/cystei 98.4 1.2E-05 2.6E-10 76.6 16.9 131 124-254 142-288 (299)
30 TIGR03340 phn_DUF6 phosphonate 98.4 1.8E-06 3.8E-11 81.4 10.1 128 124-251 143-281 (281)
31 TIGR00817 tpt Tpt phosphate/ph 98.3 7.8E-06 1.7E-10 77.7 13.5 130 124-253 144-293 (302)
32 COG0697 RhaT Permeases of the 98.3 4.8E-05 1E-09 70.1 17.6 129 124-253 153-287 (292)
33 PRK15430 putative chlorampheni 98.2 4.2E-05 9.2E-10 72.7 15.4 126 129-254 153-286 (296)
34 TIGR00776 RhaT RhaT L-rhamnose 98.2 2.1E-05 4.5E-10 75.0 12.8 127 124-252 151-287 (290)
35 KOG2234 Predicted UDP-galactos 98.2 0.00097 2.1E-08 64.9 23.2 197 125-323 15-245 (345)
36 PRK15051 4-amino-4-deoxy-L-ara 98.1 0.0001 2.2E-09 60.8 13.7 61 192-252 47-108 (111)
37 PTZ00343 triose or hexose phos 98.1 0.00012 2.7E-09 71.5 16.7 129 124-252 193-347 (350)
38 PRK02971 4-amino-4-deoxy-L-ara 98.1 0.00011 2.3E-09 62.3 13.5 118 125-254 2-123 (129)
39 PF03151 TPT: Triose-phosphate 98.1 0.00024 5.1E-09 60.3 15.8 125 126-250 1-150 (153)
40 KOG4314 Predicted carbohydrate 98.0 5E-05 1.1E-09 68.6 10.2 93 194-286 65-161 (290)
41 KOG1441 Glucose-6-phosphate/ph 98.0 5.4E-05 1.2E-09 73.2 10.4 177 141-317 33-222 (316)
42 KOG2766 Predicted membrane pro 97.9 1.2E-06 2.6E-11 81.6 -2.5 155 152-309 47-212 (336)
43 KOG3912 Predicted integral mem 97.8 0.0012 2.7E-08 62.5 16.9 166 138-304 16-219 (372)
44 PRK13499 rhamnose-proton sympo 97.8 0.0029 6.3E-08 62.0 19.9 154 122-277 4-191 (345)
45 KOG1444 Nucleotide-sugar trans 97.7 0.0018 3.9E-08 62.3 16.2 175 140-315 27-211 (314)
46 COG5006 rhtA Threonine/homoser 97.7 0.0011 2.3E-08 62.1 13.8 126 124-249 147-278 (292)
47 KOG1443 Predicted integral mem 97.4 0.0019 4.2E-08 61.8 11.9 150 138-287 30-191 (349)
48 PF06027 DUF914: Eukaryotic pr 97.3 0.0061 1.3E-07 59.6 14.5 132 122-253 165-305 (334)
49 PF10639 UPF0546: Uncharacteri 97.3 0.0011 2.4E-08 54.9 7.6 108 131-251 2-112 (113)
50 PRK10650 multidrug efflux syst 97.0 0.027 5.9E-07 46.4 13.1 70 182-251 35-106 (109)
51 COG2076 EmrE Membrane transpor 96.9 0.012 2.5E-07 48.3 10.0 64 190-253 38-103 (106)
52 PRK11431 multidrug efflux syst 96.9 0.017 3.7E-07 47.2 10.8 63 190-252 37-101 (105)
53 PRK10452 multidrug efflux syst 96.9 0.015 3.2E-07 48.7 10.6 64 190-253 38-103 (120)
54 PRK09541 emrE multidrug efflux 96.8 0.018 3.8E-07 47.5 10.8 62 192-253 40-103 (110)
55 PF08449 UAA: UAA transporter 96.8 0.058 1.3E-06 51.4 15.9 127 126-252 155-296 (303)
56 PF06800 Sugar_transport: Suga 96.8 0.038 8.2E-07 52.5 13.7 117 123-242 136-256 (269)
57 TIGR00688 rarD rarD protein. T 96.2 0.12 2.6E-06 47.8 13.6 98 129-228 150-254 (256)
58 PF05653 Mg_trans_NIPA: Magnes 96.2 0.028 6.1E-07 54.1 9.2 117 122-252 4-121 (300)
59 PF06800 Sugar_transport: Suga 96.1 0.47 1E-05 45.1 16.6 116 180-300 43-173 (269)
60 PF04657 DUF606: Protein of un 96.0 0.39 8.4E-06 41.0 14.5 123 128-250 4-138 (138)
61 PRK13499 rhamnose-proton sympo 95.6 0.47 1E-05 46.7 14.9 130 123-252 172-340 (345)
62 COG2962 RarD Predicted permeas 95.2 0.98 2.1E-05 43.3 15.1 119 133-253 156-283 (293)
63 PF00893 Multi_Drug_Res: Small 95.2 0.14 3E-06 40.7 8.1 53 191-243 38-92 (93)
64 KOG4510 Permease of the drug/m 95.0 0.014 3E-07 55.3 2.2 124 126-249 192-321 (346)
65 KOG1580 UDP-galactose transpor 94.4 0.32 7E-06 45.5 9.4 132 154-286 54-198 (337)
66 PF06379 RhaT: L-rhamnose-prot 93.7 3 6.5E-05 41.0 15.0 158 122-281 4-194 (344)
67 COG3238 Uncharacterized protei 93.3 4.5 9.8E-05 35.2 14.0 126 125-251 5-144 (150)
68 KOG1442 GDP-fucose transporter 93.2 0.19 4E-06 48.0 5.7 119 198-322 123-247 (347)
69 KOG1581 UDP-galactose transpor 93.1 8.7 0.00019 37.3 16.9 156 152-308 50-219 (327)
70 KOG2765 Predicted membrane pro 92.4 1.1 2.3E-05 44.6 9.9 133 123-255 245-392 (416)
71 COG4975 GlcU Putative glucose 91.6 0.037 8.1E-07 51.8 -0.9 155 126-283 3-175 (288)
72 COG5070 VRG4 Nucleotide-sugar 91.6 1.3 2.9E-05 41.2 9.1 168 141-312 22-206 (309)
73 KOG1441 Glucose-6-phosphate/ph 90.2 0.87 1.9E-05 44.3 6.9 130 123-252 161-306 (316)
74 TIGR00803 nst UDP-galactose tr 89.8 3.3 7.2E-05 37.4 10.2 59 192-250 162-221 (222)
75 PF03151 TPT: Triose-phosphate 88.2 1.7 3.6E-05 36.5 6.6 54 261-314 1-58 (153)
76 KOG1581 UDP-galactose transpor 87.8 8.4 0.00018 37.4 11.5 129 122-250 169-310 (327)
77 KOG4831 Unnamed protein [Funct 86.8 5.9 0.00013 32.7 8.5 110 128-251 6-123 (125)
78 KOG1582 UDP-galactose transpor 81.5 10 0.00022 36.4 8.9 83 224-307 148-236 (367)
79 KOG1580 UDP-galactose transpor 79.7 17 0.00036 34.4 9.5 126 125-250 172-310 (337)
80 PF07857 DUF1632: CEO family ( 76.1 10 0.00022 35.9 7.2 159 126-286 1-209 (254)
81 PF00892 EamA: EamA-like trans 74.3 4 8.7E-05 32.2 3.6 37 270-310 1-37 (126)
82 KOG2922 Uncharacterized conser 72.8 2.1 4.6E-05 41.6 1.8 118 120-253 16-136 (335)
83 PRK02237 hypothetical protein; 70.6 47 0.001 27.4 8.8 31 223-253 74-105 (109)
84 COG4975 GlcU Putative glucose 65.3 5.7 0.00012 37.6 2.9 99 149-250 177-282 (288)
85 PF05297 Herpes_LMP1: Herpesvi 64.7 2.2 4.7E-05 41.0 0.0 60 206-265 47-112 (381)
86 PF07857 DUF1632: CEO family ( 64.5 26 0.00057 33.1 7.2 31 121-151 179-209 (254)
87 KOG1444 Nucleotide-sugar trans 63.0 68 0.0015 31.3 9.8 49 124-172 156-206 (314)
88 PF04246 RseC_MucC: Positive r 62.1 11 0.00025 31.5 4.0 42 207-248 66-107 (135)
89 PF02694 UPF0060: Uncharacteri 61.5 52 0.0011 27.1 7.4 34 220-253 69-103 (107)
90 COG3086 RseC Positive regulato 59.2 17 0.00037 31.5 4.5 46 202-247 68-113 (150)
91 PF06570 DUF1129: Protein of u 59.2 1.2E+02 0.0025 27.4 10.3 18 129-146 89-106 (206)
92 PRK10862 SoxR reducing system 55.1 17 0.00036 31.6 3.9 24 206-229 72-95 (154)
93 KOG1443 Predicted integral mem 54.7 2.2E+02 0.0048 28.0 11.7 128 124-251 163-313 (349)
94 TIGR00803 nst UDP-galactose tr 54.5 1.6E+02 0.0035 26.3 10.7 57 229-285 46-110 (222)
95 COG1742 Uncharacterized conser 53.2 1.2E+02 0.0025 25.0 8.1 28 226-253 76-104 (109)
96 COG5070 VRG4 Nucleotide-sugar 52.4 90 0.002 29.4 8.3 23 150-172 182-204 (309)
97 PF12811 BaxI_1: Bax inhibitor 50.2 2.4E+02 0.0052 27.0 21.3 45 261-309 215-259 (274)
98 PF06123 CreD: Inner membrane 48.7 2.1E+02 0.0046 29.2 11.1 48 126-176 301-348 (430)
99 PRK11715 inner membrane protei 48.5 2.4E+02 0.0051 28.9 11.4 48 126-176 307-354 (436)
100 KOG2766 Predicted membrane pro 48.1 25 0.00055 33.6 4.1 129 122-253 163-299 (336)
101 KOG2322 N-methyl-D-aspartate r 47.8 2.1E+02 0.0045 26.9 9.9 22 260-281 195-216 (237)
102 KOG3912 Predicted integral mem 47.0 2.9E+02 0.0062 27.0 10.9 128 123-251 174-332 (372)
103 PF09586 YfhO: Bacterial membr 40.5 5.1E+02 0.011 28.1 17.1 25 153-177 92-116 (843)
104 COG2807 CynX Cyanate permease 40.4 3.5E+02 0.0075 27.3 10.9 77 205-284 43-125 (395)
105 KOG1582 UDP-galactose transpor 36.3 3.4E+02 0.0075 26.4 9.7 49 207-255 285-334 (367)
106 COG3169 Uncharacterized protei 36.2 84 0.0018 25.6 4.8 34 220-253 82-115 (116)
107 PF06123 CreD: Inner membrane 35.8 4.9E+02 0.011 26.5 12.5 69 181-251 324-396 (430)
108 PF09656 PGPGW: Putative trans 32.6 1.6E+02 0.0035 21.1 5.3 46 236-285 4-49 (53)
109 KOG1583 UDP-N-acetylglucosamin 28.9 2.2E+02 0.0048 27.6 7.1 80 218-298 101-201 (330)
110 COG2510 Predicted membrane pro 28.4 2.3E+02 0.0051 24.3 6.5 46 261-309 4-49 (140)
111 PF11947 DUF3464: Protein of u 25.2 3.3E+02 0.0073 23.8 7.1 34 136-170 80-113 (153)
112 PF11700 ATG22: Vacuole efflux 25.0 7.5E+02 0.016 25.2 11.8 30 254-283 122-151 (477)
113 KOG3817 Uncharacterized conser 24.8 3.9E+02 0.0084 26.9 8.1 75 136-216 200-285 (452)
114 PRK11715 inner membrane protei 23.9 7.9E+02 0.017 25.1 12.7 70 181-251 330-402 (436)
115 COG4657 RnfA Predicted NADH:ub 20.4 6.2E+02 0.014 22.6 11.2 81 229-309 92-184 (193)
116 CHL00196 psbY photosystem II p 20.0 1.3E+02 0.0027 20.0 2.6 17 262-278 8-24 (36)
No 1
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.88 E-value=1.6e-20 Score=178.03 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFVEAL 201 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~-~~~~l~~~ 201 (328)
-.+.+++..++||++++++|...++++|.+++++|+++++++++++...++ .++++++.....|.+.. ..+.++++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999988776543 24556777777887653 45667788
Q ss_pred HH-hhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCC-C-CCcHHHHHHHHHHHHHHHHHHH
Q 020256 202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG-S-PPSVGDFLNFLSAIFFGIHMLR 278 (328)
Q Consensus 202 aL-~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g-~-~~~~G~ll~LlaAl~~A~~~I~ 278 (328)
+. +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..++ . ....|++++++++++||.|.+.
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 88 9999999999999999999999987899999999999999999998886543 2 2357999999999999999999
Q ss_pred HHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256 279 TERISRSTKKENFLPLLGYEVAYLSEKELFSYDS 312 (328)
Q Consensus 279 ~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~ 312 (328)
.||..++ +....+.+|+..+++.+.+....
T Consensus 169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 198 (292)
T PRK11272 169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLL 198 (292)
T ss_pred HHhcCCC----cchHHHHHHHHHHHHHHHHHHHH
Confidence 9997653 23456778988888877665443
No 2
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.86 E-value=3.7e-20 Score=175.82 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG 202 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~-~~~~~l~~~a 202 (328)
.++++++++++++||++++.+|.+.++++|..+.++|+.+++++++++..+++. ++..+...+.|.+. ...+.+++.|
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRL-RQFPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcccccc-ccccHHHHHHHhHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999998876422222 22222233333332 3334455566
Q ss_pred Hh----hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC------------CCcHHHHHH
Q 020256 203 LL----TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLN 265 (328)
Q Consensus 203 L~----~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~------------~~~~G~ll~ 265 (328)
++ ++++++++++.++.|+++++++++ +|||+++++++|++++++|++++..++. +...|++++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA 161 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence 65 467888999999999999999985 6999999999999999999998876532 113599999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 020256 266 FLSAIFFGIHMLRTERISRST 286 (328)
Q Consensus 266 LlaAl~~A~~~I~~rkl~~~~ 286 (328)
++++++||+|+++.||..++.
T Consensus 162 l~aa~~~A~~~v~~k~~~~~~ 182 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYARGK 182 (295)
T ss_pred HHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999987765
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.85 E-value=3.5e-19 Score=169.35 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 020256 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT 205 (328)
Q Consensus 127 ~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~-~~~~l~~~aL~~ 205 (328)
.++.++++++||++++++|...++++|..+.++|+++++++++++..++|.+ ++.....|+... ..+.+++.++++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVP---LNLLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999999999999999999888776655433322 233334454432 334566778887
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 020256 206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT 279 (328)
Q Consensus 206 -tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---~~-~~G~ll~LlaAl~~A~~~I~~ 279 (328)
.++++++++.++.|+++++++++ +|||+++++++|++++++|+.++..++. +. ..|++++++++++||+|.++.
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999975 6999999999999999999998876431 22 369999999999999999999
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHH
Q 020256 280 ERISRSTKKENFLPLLGYEVAYLSEKEL 307 (328)
Q Consensus 280 rkl~~~~~~~~~l~l~~~q~l~aai~ll 307 (328)
||..++.++........+++..+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFF 190 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHH
Confidence 9987655444455666777766665443
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.84 E-value=4.5e-19 Score=168.44 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=139.1
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---------ChhhHHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGLWV 192 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~---------~~~~~~~~ll~G~l~ 192 (328)
++.+|++++++++++||.+++++|.. ++++|.++.++|++++.++++++...+++ +++++......++..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLI 83 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 55789999999999999999999986 67999999999999999887776543321 112222222223334
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHH
Q 020256 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF 271 (328)
Q Consensus 193 ~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~ 271 (328)
+..+.++++|++++++++++++.++.|+++.+++++ +|||+++++|+|++++++|++++..++++. .+++++++++
T Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~~ 160 (296)
T PRK15430 84 GGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAFS 160 (296)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHHH
Confidence 556789999999999999999999999999999975 699999999999999999999887543222 2578899999
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHH
Q 020256 272 FGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKE 306 (328)
Q Consensus 272 ~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~l 306 (328)
||+|.+..||..++. ..+....+.+++.++.+..
T Consensus 161 ~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~ 194 (296)
T PRK15430 161 FAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIYL 194 (296)
T ss_pred HHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHH
Confidence 999999999875432 2233445566666665554
No 5
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.83 E-value=9.7e-19 Score=162.26 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--C---------Chhh-HHHHHHHHHHH
Q 020256 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--D---------DVKT-RNAGIELGLWV 192 (328)
Q Consensus 125 ~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~---------~~~~-~~~~ll~G~l~ 192 (328)
+|++++++++++||++++++|. .++++|.+++++|+++++++++++...++ + ++++ +....+.|++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 4889999999999999999998 46799999999999999988777653221 1 1112 22345566666
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHH
Q 020256 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF 271 (328)
Q Consensus 193 ~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~ 271 (328)
...+.++++|++++++++++++.++.|+++.+++++ +|||+++++|+|++++++|++++..++.+.. +++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~---~~~l~aa~~ 157 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP---WEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch---HHHHHHHHH
Confidence 677889999999999999999999999999999975 7999999999999999999998765432221 468899999
Q ss_pred HHHHHHHHHHhhh
Q 020256 272 FGIHMLRTERISR 284 (328)
Q Consensus 272 ~A~~~I~~rkl~~ 284 (328)
||+|.+..||..+
T Consensus 158 ~a~~~i~~~~~~~ 170 (256)
T TIGR00688 158 FTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHhhcCC
Confidence 9999999998765
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.83 E-value=9.6e-19 Score=171.11 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=153.2
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhc-c-C--C---hhhHHHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D--D---VKTRNAGIELGLWVS 193 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~-~~~P~~l~~~R~liA~llLl~~~~~~-~-~--~---~~~~~~~ll~G~l~~ 193 (328)
|+.+.++.+++.-+..+...++.|.+++ +++|+.+.++|+.+|+++++++.+.+ | + + ++++....+.|++..
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999987 79999999999999999999887543 1 1 2 345566777777664
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHhhhhhhcCCC----------
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECSGS---------- 256 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-------~eri~~~~~igl~lg~iGv~ll~~~g~---------- 256 (328)
..+.++++|++++++++++++.+++|+++.++++++ +||+++++++|++++++|+.++...++
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 455678899999999999999999999999999755 899999999999999999988764210
Q ss_pred ----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhh
Q 020256 257 ----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYD 311 (328)
Q Consensus 257 ----------------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~ 311 (328)
+...|+++.++++++||+|+++.||..+++++ ....++|++..+++...+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l 238 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGL 238 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHH
Confidence 01349999999999999999999999887643 346777888777766544433
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.81 E-value=3.1e-18 Score=158.01 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=143.3
Q ss_pred HhhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHH
Q 020256 137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI 214 (328)
Q Consensus 137 WG~s~i~~K~~~~-~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~tsa~~aavI 214 (328)
||.+++..|...+ ..|+..+.+.|++.+.+++.++..++ +++++++..+..|.+ ....+.++++|++++++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 8999999999887 58999999999999988887766554 455566666666655 45667888999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC--CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Q 020256 215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF 291 (328)
Q Consensus 215 ~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~--~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~ 291 (328)
.++.|+++.+++++ +|||+++++++|++++++|+.++..++. ....|++++++++++|+.+.++.|+..++.++ +.
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~ 158 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-EL 158 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hH
Confidence 99999999999975 6999999999999999999998876542 23589999999999999999999998876633 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 020256 292 LPLLGYEVAYLSEKELFSYDSF 313 (328)
Q Consensus 292 l~l~~~q~l~aai~ll~~~~~~ 313 (328)
.....+++.++++.+++.....
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ 180 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFL 180 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555578888888777665443
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.80 E-value=1.6e-17 Score=157.59 Aligned_cols=182 Identities=15% Similarity=0.089 Sum_probs=144.5
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVE 199 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~~~~~~~~~ll~G~l~~~~~~l~ 199 (328)
++.+++++++++++.|++++.++|++.++++|..++++|+++++++++++..+++ .++++++..+..|+..+..+.++
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLF 88 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999887764432 34667777777787766667788
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCCC---C-CcHHHHHHHHHHHHHHHH
Q 020256 200 ALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIH 275 (328)
Q Consensus 200 ~~aL~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g~---~-~~~G~ll~LlaAl~~A~~ 275 (328)
++++++++++.++++.++.|+++.+++ +|++. ++.++.++++|+.++..++. + ...|++++++++++||+|
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~ 163 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIY 163 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHH
Confidence 899999999999999999999998776 35543 45567788999988764331 2 246999999999999999
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256 276 MLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDS 312 (328)
Q Consensus 276 ~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~ 312 (328)
.+..||..++. ++... .++..++++.+++....
T Consensus 164 ~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~ 196 (293)
T PRK10532 164 ILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGAL 196 (293)
T ss_pred HHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHH
Confidence 99999997765 33444 45666666666655443
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.74 E-value=3.6e-16 Score=148.55 Aligned_cols=171 Identities=12% Similarity=0.023 Sum_probs=141.3
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHH---hcc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Q 020256 142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS 215 (328)
Q Consensus 142 i~~K~~~~~-~~P~~l~~~R~liA~llLl~~~~---~~~--~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~ 215 (328)
+.-|.++++ ..|..++++|++++.+.+.+... +++ .++++++..+..|++....+.+.+++++++++++++++.
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 467999987 77999999999999887766521 111 256788888889988777778899999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHH
Q 020256 216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLP 293 (328)
Q Consensus 216 ~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~ 293 (328)
++.|+++++++++ +|||+++++++|++++++|+++....+.+. ..|++++++++++||+|.++.||..++ ++.++..
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~ 177 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLDKTN 177 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCccc
Confidence 9999999999975 699999999999999999998765443333 469999999999999999999998772 1346778
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 020256 294 LLGYEVAYLSEKELFSYDSF 313 (328)
Q Consensus 294 l~~~q~l~aai~ll~~~~~~ 313 (328)
++.||+..+++.++|.....
T Consensus 178 ~~~~~~~~~~~~l~p~~~~~ 197 (302)
T TIGR00817 178 LYAYISIMSLFLLSPPAFIT 197 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887765543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.72 E-value=3.7e-15 Score=145.35 Aligned_cols=176 Identities=9% Similarity=-0.005 Sum_probs=140.6
Q ss_pred hhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHh--cc-C----ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 020256 138 ASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-D----DVKTRNAGIELGLWVSLGYFVEALGLLTSDAG 209 (328)
Q Consensus 138 G~s~i~~K~~~~~~~-P~~l~~~R~liA~llLl~~~~~--~~-~----~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~ 209 (328)
.......|.+++.++ |+.++.+|++++.++..++... ++ . .+++++..+..|++....+.....|+++++++
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs 141 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVS 141 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 345777899999999 9999999999998776544322 11 1 12356677788887655566667999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 020256 210 RASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTK 287 (328)
Q Consensus 210 ~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~ 287 (328)
.+.++-++.|+++.+++++ +|||++++++++++++++|+.+....+.++ ..|++++++|+++||+++++.||..++.+
T Consensus 142 ~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 142 FTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred HHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999975 699999999999999999999987655444 46999999999999999999999887643
Q ss_pred ----CCChHHHHHHHHHHHHHHHHHHhhhh
Q 020256 288 ----KENFLPLLGYEVAYLSEKELFSYDSF 313 (328)
Q Consensus 288 ----~~~~l~l~~~q~l~aai~ll~~~~~~ 313 (328)
..+...+..++...+++.++|.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~ 251 (350)
T PTZ00343 222 EIGENLTASNIYMLLTLIASLISLPLVLFF 251 (350)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566666777888988888765533
No 11
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.59 E-value=4.9e-13 Score=123.49 Aligned_cols=174 Identities=20% Similarity=0.253 Sum_probs=136.7
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHhcc--C--ChhhHHHHHHHHHH-HHHHH
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--D--DVKTRNAGIELGLW-VSLGY 196 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~~-~~P~~l~~~R~liA~llLl~~~~~~~--~--~~~~~~~~ll~G~l-~~~~~ 196 (328)
...+.+..++..+.|+.+....|...++ .++....+.|++++.+.+.+...+++ . ..+.++...+.+.+ ....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 4567788888889999999999998886 77777788899999988554444332 1 11122334444443 45567
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-Hh-cCcCcHHHHHHHHHHHHhhhhhhcCCCC-C---cHHHHHHHHHHH
Q 020256 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGSP-P---SVGDFLNFLSAI 270 (328)
Q Consensus 197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll-~eri~~~~~igl~lg~iGv~ll~~~g~~-~---~~G~ll~LlaAl 270 (328)
.+++.++++++++.++.+.++.|+++.++++ ++ +||++++++++++++++|+.++..++.. . ..|+++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999996 54 9999999999999999999999887643 2 489999999999
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHH-HHHH
Q 020256 271 FFGIHMLRTERISRSTKKENFLPLLG-YEVA 300 (328)
Q Consensus 271 ~~A~~~I~~rkl~~~~~~~~~l~l~~-~q~l 300 (328)
+||++.+..|+.. +. +...... +++.
T Consensus 165 ~~a~~~~~~~~~~-~~---~~~~~~~~~~~~ 191 (292)
T COG0697 165 LWALYTALVKRLS-RL---GPVTLALLLQLL 191 (292)
T ss_pred HHHHHHHHHHHhc-CC---ChHHHHHHHHHH
Confidence 9999999999987 43 4444555 5655
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.59 E-value=2.3e-13 Score=128.29 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--c----CChhh-HHHHHHHHHHHHHHHHHH
Q 020256 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKT-RNAGIELGLWVSLGYFVE 199 (328)
Q Consensus 127 ~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~--~----~~~~~-~~~~ll~G~l~~~~~~l~ 199 (328)
.++.++++++|+...+..|...+.-++ ..++++..++++++++...+ + ..+++ +...+..|+.....+.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999966555444 35777888887887776543 1 11223 333444444455667788
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC--CCcHHHHHHHHHHHHHHHHH
Q 020256 200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM 276 (328)
Q Consensus 200 ~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~--~~~~G~ll~LlaAl~~A~~~ 276 (328)
+.|++++++++++.+.++.|+++.+++++ +|||+++++|+|++++++|++++..++. ....|++++++++++|++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999985 6999999999999999999998876542 22468889999999999999
Q ss_pred HHHHHhhhccCC-CChHHHHHHHHHHH
Q 020256 277 LRTERISRSTKK-ENFLPLLGYEVAYL 302 (328)
Q Consensus 277 I~~rkl~~~~~~-~~~l~l~~~q~l~a 302 (328)
+..|+..++.++ .+......+++..+
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~ 187 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAM 187 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHH
Confidence 998886544432 12223334444443
No 13
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.42 E-value=3.5e-11 Score=116.77 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=131.1
Q ss_pred HHHHhhhHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHhcc-C------ChhhHHHHHHHHHHHHHHHHHHHHHH
Q 020256 134 TIVYASDIPILKAAEE---IMHPASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSLGYFVEALGL 203 (328)
Q Consensus 134 ~llWG~s~i~~K~~~~---~~~P~~l~~~R~liA~llLl~~~~~~~-~------~~~~~~~~ll~G~l~~~~~~l~~~aL 203 (328)
+++=..+.+......+ +.|..+ .++-++.-.++..+....|+ . .++.|...++++++-..++++...|+
T Consensus 22 sl~~~~t~~~s~~l~~~~~~~P~~Q-s~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~ 100 (334)
T PF06027_consen 22 SLCITGTGTFSSLLANKGVNIPTFQ-SFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY 100 (334)
T ss_pred HHHHHhHHHHHHHHHhcCccCcHHH-HHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444333 344444 44444444444444444332 1 23456667778888777888999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC----------CCcHHHHHHHHHHHHH
Q 020256 204 LTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS----------PPSVGDFLNFLSAIFF 272 (328)
Q Consensus 204 ~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~----------~~~~G~ll~LlaAl~~ 272 (328)
+||+.+.+.++..+..+++.+++++ +|+|.++.+++|++++++|++++...+. +...||+++++|++.|
T Consensus 101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~ly 180 (334)
T PF06027_consen 101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILY 180 (334)
T ss_pred hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHH
Confidence 9999999999999999999999985 7999999999999999999988765431 2368999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 020256 273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNF 321 (328)
Q Consensus 273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~~~~~~~f 321 (328)
|+++++.++..++. +.....++.-+++.+++.+.....+-..+.++
T Consensus 181 a~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~ 226 (334)
T PF06027_consen 181 AVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERSGIESI 226 (334)
T ss_pred HHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehhhhhcc
Confidence 99999999998876 45666666666777766655544444444444
No 14
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.36 E-value=8.7e-11 Score=111.81 Aligned_cols=178 Identities=12% Similarity=0.039 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~---~-~~~~~~~ll~G~l~~~~~~l~~~ 201 (328)
++++.++++++||+.++..|... +.++.++. |..++.+++..+....+. + ++.+....+.|+....++.+++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 57888999999999999999866 78887775 788888877655433221 1 23345566677777778899999
Q ss_pred HHhhcchHHHHHHHH-HHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHhhhhhhcCCC---------CCcHHHHHHH
Q 020256 202 GLLTSDAGRASFISL-FTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF 266 (328)
Q Consensus 202 aL~~tsa~~aavI~~-~~Pifv~lla~l-l~eri~~~~----~igl~lg~iGv~ll~~~g~---------~~~~G~ll~L 266 (328)
+.++++.+.+..+.+ +.++++.+++.+ +||+.++++ ++|+++.++|+.++...+. +...|.++++
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l 158 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL 158 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence 999999999988877 788888888865 799999988 9999999999988765321 1258999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHH
Q 020256 267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELF 308 (328)
Q Consensus 267 laAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~ 308 (328)
+++++|+.|.+..|+.. .|+.+......+.++.++++..+
T Consensus 159 ~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ 198 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNL 198 (290)
T ss_pred HHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHH
Confidence 99999999999999762 43333322244444555544433
No 15
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.35 E-value=1.1e-11 Score=100.70 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=97.7
Q ss_pred HHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc-c-----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 020256 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA-R-----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD 207 (328)
Q Consensus 135 llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~-~-----~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~ts 207 (328)
++||...+..|...++.||....++|+.++++ ++++.... + .+.+++......|++ ...++.+++.|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 47999999999999999999999999999997 44443322 1 133455566666665 4677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 208 a~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
++.++.+.++.|+++.+++++ ++|+++.++++|+++.++|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 699999999999999999998864
No 16
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=1e-11 Score=103.77 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-------CChhhHHHHHHHHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-------DDVKTRNAGIELGLWVSLGYFV 198 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~-------~~~~~~~~~ll~G~l~~~~~~l 198 (328)
..++.++++++||...++.|...+++||..-.++|-++..++++.++...+ .+.|.|....+.|+..+..+.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~ 83 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999888877653 1456777888888877888999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
|+.+++...++..+-+..+.|+++.+++++ +|||++..+|+|+++..+|++++.
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999985 799999999999999999998764
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.27 E-value=4.5e-10 Score=103.84 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh--ccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGL 203 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~--~~~~~~~~~~~ll~G~l~~~~~~l~~~aL 203 (328)
.++.++.+++.-=....+.|.....++|...+.+|..+++++++++... +|..++++...+..|+.+..-+.++|.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777666777888999999999999999999999999887753 34567888888899998877788889999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhcCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 020256 204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT 279 (328)
Q Consensus 204 ~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~~g~---~~-~~G~ll~LlaAl~~A~~~I~~ 279 (328)
+..|-+.+.-|-.+-|+.+.++. -+| .+..+-+.+++.|+.++.-.+. +. ..|..+++.++.+|+.|++..
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~~---sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALLS---SRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HhccchhhhhhhhccHHHHHHHh---ccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 99999999999999998766554 233 3455556677888887755442 33 589999999999999999999
Q ss_pred HHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 020256 280 ERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFH 314 (328)
Q Consensus 280 rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~ 314 (328)
+|..+..+ ...-+...|.+++++.+|+.....
T Consensus 168 ~r~g~~~~---g~~g~a~gm~vAaviv~Pig~~~a 199 (292)
T COG5006 168 QRAGRAEH---GTAGVAVGMLVAALIVLPIGAAQA 199 (292)
T ss_pred chhcccCC---CchHHHHHHHHHHHHHhhhhhhhc
Confidence 99886543 334566788999999888765443
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.22 E-value=2.5e-09 Score=100.81 Aligned_cols=173 Identities=18% Similarity=0.157 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHHH
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS 193 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~---------~~~~~~~~~ll~G~l~~ 193 (328)
..+|+++.+.+.++||..+...|. ++.+++.++...|.+-+..+++.+....| ++++.+....+.+++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 357999999999999999999998 57899999999999999988876654322 12233445556677777
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHH
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF 272 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~~ 272 (328)
..+..+.++...-.+-++++=.+..|++..+++. ++|||+++.||++++++.+||.......+++.+ ..+.=+++|
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpw---val~la~sf 160 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPW---VALALALSF 160 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcH---HHHHHHHHH
Confidence 7888999999999999999999999999999997 479999999999999999999876654333432 344456899
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 020256 273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSE 304 (328)
Q Consensus 273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai 304 (328)
++|-.. ||..+ . +...-...+++....
T Consensus 161 ~~Ygl~-RK~~~-v---~a~~g~~lE~l~l~p 187 (293)
T COG2962 161 GLYGLL-RKKLK-V---DALTGLTLETLLLLP 187 (293)
T ss_pred HHHHHH-HHhcC-C---chHHhHHHHHHHHhH
Confidence 999865 44333 2 333333445444433
No 19
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.13 E-value=2.6e-11 Score=112.76 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=123.8
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWVSLGYF 197 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~~~~~~ 197 (328)
+..+|.++..++ .++.+..++.+.. .+.+|.+..-.|++.-.++-.+..+.++. +....++.++.|+..+.+..
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 445677777777 5565555555543 35789999999977666665555443321 11122334456666555667
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---------------CCcHH
Q 020256 198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG 261 (328)
Q Consensus 198 l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---------------~~~~G 261 (328)
+.+++++|.+.++|.+|..+.|+++.+++|. +||+.++...++.++.+.||+++.+|.. .-..|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 7789999999999999999999999999985 7999999999999999999999988731 12478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 020256 262 DFLNFLSAIFFGIHMLRTERISRSTK 287 (328)
Q Consensus 262 ~ll~LlaAl~~A~~~I~~rkl~~~~~ 287 (328)
.+.++.++++-|--.|+.|+..|+.+
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h 218 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAH 218 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhcccc
Confidence 88999999999988899999988764
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.05 E-value=2.9e-09 Score=87.40 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256 158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (328)
Q Consensus 158 ~~R~liA~llLl~~~~~~~~--------~~~~~~~~ll~G~l~~-~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l 228 (328)
.+|++.+.+++..+...+++ +++.+......|+... .++.++++|+++++ +.++.+.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999998887765432 1233445556676654 67889999999999 58889999999999999975
Q ss_pred -hcCcCcHHHHHHHHHHHHhhhhhhcCC
Q 020256 229 -LGAIIPAHTWFGVLISALGVGMLECSG 255 (328)
Q Consensus 229 -l~eri~~~~~igl~lg~iGv~ll~~~g 255 (328)
+|||+++++|++++++++|++++..++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999999987664
No 21
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.05 E-value=1e-08 Score=94.44 Aligned_cols=125 Identities=23% Similarity=0.271 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY 196 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P--~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~ 196 (328)
.+|.++.++++++|+...+..|...++.+| ..+..+|+.++.++++++....+. +.+++...+..|++. ..++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999998877774 455557899999998888765432 233455555566553 4678
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhh
Q 020256 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGV 248 (328)
Q Consensus 197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv 248 (328)
.+++.++++.+++.++.+.++.|+++.+++++ ++|+++..+++|.++.+.|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999975 79999999999999999997
No 22
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.02 E-value=4.6e-09 Score=101.76 Aligned_cols=140 Identities=12% Similarity=0.138 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCCC-----
Q 020256 183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS----- 256 (328)
Q Consensus 183 ~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g~----- 256 (328)
+..+.+..+.+.+.+.+..++.+|+++..+++.++.-+|+..++.++ +||++..+.+++++.+.||+++..++.
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~ 239 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSD 239 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccccc
Confidence 34455555666777888899999999999999999999999999765 899999999999999999999876631
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCChHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 020256 257 ----PPSVGDFLNFLSAIFFGIHMLRTERISRSTK-KENFLPLLGYEVAYLSEKELFSYDSFHAQKIFNFQ 322 (328)
Q Consensus 257 ----~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~-~~~~l~l~~~q~l~aai~ll~~~~~~~~~~~~~f~ 322 (328)
....|+++++++|+.||+|+++.||...+++ ..+.-.+.++--++..+++.|.....+....+.|+
T Consensus 240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~ 310 (416)
T KOG2765|consen 240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFE 310 (416)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCccc
Confidence 2368999999999999999999999887763 44433333333334444444433333333444433
No 23
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.73 E-value=6.2e-07 Score=85.20 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV 198 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~~l 198 (328)
..|.++.+++++.|+...+..|...++.+|....... ++++++++++...... +...+...+.+|++. ..+|.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999987778887775544 5566666666554321 222333344566653 457889
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
+++++++.++++++++.++.|++..+++++ ++|+++..+++|.++.+.|+.+..
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 799999999999999999988764
No 24
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.72 E-value=5.2e-07 Score=85.79 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV 198 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~-----~~~~~~~~~ll~G~l~~~~~~l 198 (328)
..|.++.++++++|+...+..|...++.++..... ..+++.+.+...... .+...+...+..|+....+|.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999877778765432 333333333222221 1233454455555544567899
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+++++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+++...
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999975 7999999999999999999987643
No 25
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.70 E-value=4.9e-06 Score=79.47 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (328)
Q Consensus 152 ~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l 228 (328)
.|..+.+..++...+.-.+.....+ .++..++..+..+++......+...+++|.+...-.++-+..|+.+++++.+
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 4889999999988887666554333 2344566777788877777788889999999988888899999999999975
Q ss_pred -hcCcCcHHHHHHHHHHHHhhhhhhcCCC-------C----CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Q 020256 229 -LGAIIPAHTWFGVLISALGVGMLECSGS-------P----PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG 296 (328)
Q Consensus 229 -l~eri~~~~~igl~lg~iGv~ll~~~g~-------~----~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~ 296 (328)
+|||.++++++++++..+|+++....+. . ...|+++.+++.++-|+..++.+|..+++ +.++....+
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mf 189 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMF 189 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHH
Confidence 6999999999999999999988755431 1 12499999999999999999999998876 446788888
Q ss_pred HHHHHHHHHHHHHhhh
Q 020256 297 YEVAYLSEKELFSYDS 312 (328)
Q Consensus 297 ~q~l~aai~ll~~~~~ 312 (328)
+..+.+.+..++....
T Consensus 190 y~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 190 YTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877766554433
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.64 E-value=1.4e-06 Score=82.68 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHHHH-HHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWV-SLGY 196 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~------~~~~~~~~ll~G~l~-~~~~ 196 (328)
..|.++.++++++|+...+..|..... ++.....+.+.++++++.++...... +.+.|...+..|++. ..++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999986433 44566788888888888776654321 234455555566653 4678
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 197 ~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
.++++++++.++++++++.++.|++..+++++ ++|+++..+++|.++.++|+.++..
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999975 6999999999999999999988754
No 27
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.61 E-value=1.4e-06 Score=85.56 Aligned_cols=131 Identities=8% Similarity=0.067 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHh-ccCChhh--------HHHHHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFW-ARDDVKT--------RNAGIELGLWVS 193 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P-~~l~~~R~liA~llLl~~~~~-~~~~~~~--------~~~~ll~G~l~~ 193 (328)
..|.++++++++.|+...+..|......++ ....++..+++++.+.+.... .+.+.+. ....+..|+...
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~ 267 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence 458899999999999999999987776655 466667777776666544433 2211111 111222333334
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
..|.++.+++++.+++.++...++.|++..+++++ ++|+++..+++|.++.+.|++++..+
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 57888999999999999999999999999999985 79999999999999999999887643
No 28
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.49 E-value=7.9e-06 Score=76.27 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC-
Q 020256 179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS- 256 (328)
Q Consensus 179 ~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~- 256 (328)
+++.....+=++++...+.+.+.++++.+++.--++..+-.+++++++++ +|+|++++||+++++-++|+.++-.++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34445555566667777788999999999999999999999999999975 7999999999999999999998754320
Q ss_pred -----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHh
Q 020256 257 -----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSY 310 (328)
Q Consensus 257 -----------------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~ 310 (328)
+...|.++.++++++-++..++.+|..|+.+ .+...-+....+.+.+..++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHH
Confidence 1247999999999999999999999998853 3444334333344444444443
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.43 E-value=1.2e-05 Score=76.58 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHH-hcc----------CChhhHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMH---PASFCAVRFVMSAIPFLPFVF-WAR----------DDVKTRNAGIELG 189 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~---P~~l~~~R~liA~llLl~~~~-~~~----------~~~~~~~~~ll~G 189 (328)
..|.++.+++++.|+...+..|...+..+ ......+-.+++.+.+..... ..+ .+...+...+..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 45999999999999999999998654332 233344444444443332221 111 1223455555566
Q ss_pred HHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 190 ~l~-~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
++. ..+|.+++.++++.++++++.+..+.|++..+++++ ++|+++..+++|.++.++|+++...+
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 553 467889999999999999999999999999999975 79999999999999999999876543
No 30
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.39 E-value=1.8e-06 Score=81.44 Aligned_cols=128 Identities=14% Similarity=0.088 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHHHh-ccCC----hhhHHHHHHH-HHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFW-ARDD----VKTRNAGIEL-GLWVS 193 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~----~l~~~R~liA~llLl~~~~~-~~~~----~~~~~~~ll~-G~l~~ 193 (328)
..|.++.++++++|+...+..|....+.+|. ....+.+++.++.+.+.... .+.. ...+...... ++...
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 3467788899999999999998764444442 23334444432322222221 1111 1122222233 33345
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhh
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll 251 (328)
.+|.++++++++.+++.++.+.++.|++..+++++ +||+++..+++|.++.++|++++
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 67889999999999999999999999999999975 79999999999999999999763
No 31
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.35 E-value=7.8e-06 Score=77.71 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC--hhhH------------HH-H
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR------------NA-G 185 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~~~-~~--~~~~------------~~-~ 185 (328)
..|.++.+++++.|+...+..|...+ +.+|..+..+-...+++.++|+..... .+ ..++ .. .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 56999999999999999999999887 799999999999999998888865321 11 1100 00 1
Q ss_pred HHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 186 IELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 186 ll~G~-l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+..+. .....+.+++.+++++++..++++..+.|+++.+++++ ++|+++..+++|.++.++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11222 11112245667899999999999999999999999975 7999999999999999999987643
No 32
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.31 E-value=4.8e-05 Score=70.06 Aligned_cols=129 Identities=16% Similarity=0.273 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHH-HHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV 198 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~-~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~-~~~~l 198 (328)
..|.++.+++.+.|+...+..|... ..++..... +.+.....+..+...... ...+.+......|+... .++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999876 677777776 444423333333222211 23345666666776654 57889
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
++.+++..+++.++.+.++.|++..+++++ ++|+++..+++|.++.+.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998875 6999999999999999999987654
No 33
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.22 E-value=4.2e-05 Score=72.73 Aligned_cols=126 Identities=8% Similarity=-0.051 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc--C---ChhhHHHHHHHHHHHHHHHHHHHH
Q 020256 129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR--D---DVKTRNAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 129 lllla~llWG~s~i~~K~~~~~--~~P~~l~~~R~liA~llLl~~~~~~~--~---~~~~~~~~ll~G~l~~~~~~l~~~ 201 (328)
+.++++++|+...+..|....+ .+......+-..++.+.++++..... . +...+...+..|+....++.+++.
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999886432 22233333333343333222211100 0 111122333445444567899999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 202 aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++..+
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999975 79999999999999999998877544
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.21 E-value=2.1e-05 Score=75.01 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHH---HHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFV---MSAIPFLPFVFWAR-DDVKTRNAGIELGLWVSLGYFVE 199 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~l---iA~llLl~~~~~~~-~~~~~~~~~ll~G~l~~~~~~l~ 199 (328)
.+|++..+++.+.++...+..|.. +.+|....+..+. ++++++.+...+.+ ...+......+.|++...++.++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999975 5888888555444 34444333321111 11223334455787767788889
Q ss_pred HHHHh-hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHhhhhhh
Q 020256 200 ALGLL-TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVGMLE 252 (328)
Q Consensus 200 ~~aL~-~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~----igl~lg~iGv~ll~ 252 (328)
+.+++ +.+++.++.+.+..|+...+.+.+ +||+.+++++ +|.++.++|+.++.
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 99999 999999999999999999999975 7999999999 99999999998763
No 35
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.16 E-value=0.00097 Score=64.89 Aligned_cols=197 Identities=13% Similarity=0.159 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhc-c---CCHHHHHHHHHHHHHHHHHHHHHhc-----cC-----------ChhhHHH
Q 020256 125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWA-----RD-----------DVKTRNA 184 (328)
Q Consensus 125 ~g~llllla~llWG~s~i~~K~~~~-~---~~P~~l~~~R~liA~llLl~~~~~~-----~~-----------~~~~~~~ 184 (328)
.-++.+++..+.++...+..|+.-. + ..|...++.--++-.++-+.+++++ ++ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4466677778899999999998754 2 5666777666666555555444443 11 0112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC---C-----
Q 020256 185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS---G----- 255 (328)
Q Consensus 185 ~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~---g----- 255 (328)
..+=.++++..+.+++.++.+.+++.-.+...+-.+.++++..+ ++||++++||.++++-++|+.++-.+ +
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 23333445555568899999999999998888889999999974 79999999999999999999998622 1
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH-HHHHHHHHHHhhhhcccccccccc
Q 020256 256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEV-AYLSEKELFSYDSFHAQKIFNFQF 323 (328)
Q Consensus 256 ----~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~-l~aai~ll~~~~~~~~~~~~~f~~ 323 (328)
.+...|....+.+++.-++..++.+|..|+- ..+.+.-+ .|+ +++.+..+......+...+.+.+|
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~N-iqL~~~g~~f~~l~~~~~d~~~i~~~gf 245 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRN-IQLYFFGILFNLLTILLQDGEAINEYGF 245 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHH-HHHHHHHHHHHHHHHhhccccccccCCc
Confidence 1235899999999999999999999999864 22333333 344 334444444444444444444443
No 36
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.13 E-value=0.0001 Score=60.77 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
....+.++..+++..|.+.+..+.++.++++.+++++ +||+++.++++|+.+.++|++++.
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456778889999999999998888999999999975 799999999999999999998774
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.12 E-value=0.00012 Score=71.54 Aligned_cols=129 Identities=11% Similarity=0.125 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHHHHHHhc-cCC----h-------hh--H
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWA-RDD----V-------KT--R 182 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~-------~~P~~l~~~R~liA~llLl~~~~~~-~~~----~-------~~--~ 182 (328)
..|.++.+++++.|+...+..|...++ +++..+..+-.++++++++|+.... ... . .. +
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 458999999999999999999998764 5677677777788888888876522 110 0 01 1
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 183 NAGI----ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 183 ~~~l----l~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
...+ ..|+..+..+.+.+++++.+++...++...+-|+++.+++++ ++|+++..+++|.++.++|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 1111 111112222233446999999999999999999999999974 799999999999999999998753
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.09 E-value=0.00011 Score=62.27 Aligned_cols=118 Identities=17% Similarity=0.066 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHH
Q 020256 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGL 203 (328)
Q Consensus 125 ~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL 203 (328)
.+++++++..++=...-++.|...++.+....... .. ..+.. . .+....+..|+. ....+.++.+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~-~~~~~----~------~~p~~~i~lgl~~~~la~~~w~~aL 69 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FI-AALLA----F------GLALRAVLLGLAGYALSMLCWLKAL 69 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HH-HHHHH----H------hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888999999999876654332221 11 01100 0 001112344544 345788899999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHH---HhcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 204 ~~tsa~~aavI~~~~Pifv~lla~---ll~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
+..+.+.+.-+.+..++++.+.++ +++|+++..+++|+++.++|++++..+
T Consensus 70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 999999998888888888887776 579999999999999999999988654
No 39
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.09 E-value=0.00024 Score=60.28 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC---------h-------hh
Q 020256 126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWAR-DD---------V-------KT 181 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~-------~~~P~~l~~~R~liA~llLl~~~~~~~-~~---------~-------~~ 181 (328)
|.++.+.+.++-+...+..|.... ..++..+..+-...+.+++++.....+ .+ . +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 467788899999999999988654 479999999999999999988765431 10 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (328)
Q Consensus 182 ~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l 250 (328)
+...+..|++.+..+...+.-++++++...+++...-.+++.+++++ ++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 22334445554555667778899999999999999999999999975 6999999999999999999864
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.00 E-value=5e-05 Score=68.57 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCC---CCcHHHHHHHHHH
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFLNFLSA 269 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~---~~~~G~ll~LlaA 269 (328)
...++|..+++..+++.++-+....-.|+.+++++ +|+|+..-++++.++++.|++++...+. .-..|...++.||
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA 144 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSA 144 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHH
Confidence 34678888999999999999999999999999986 7999999999999999999999875543 3468999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 020256 270 IFFGIHMLRTERISRST 286 (328)
Q Consensus 270 l~~A~~~I~~rkl~~~~ 286 (328)
+.-|+|-+..|+.....
T Consensus 145 ~~aAlYKV~FK~~iGnA 161 (290)
T KOG4314|consen 145 FMAALYKVLFKMFIGNA 161 (290)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999987543
No 41
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.96 E-value=5.4e-05 Score=73.22 Aligned_cols=177 Identities=16% Similarity=0.145 Sum_probs=137.0
Q ss_pred HHHHHHHhc--cC-CHHHHHHHHHHHHHHHHHHHHHhcc---C---ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 020256 141 IPILKAAEE--IM-HPASFCAVRFVMSAIPFLPFVFWAR---D---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (328)
Q Consensus 141 ~i~~K~~~~--~~-~P~~l~~~R~liA~llLl~~~~~~~---~---~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a 211 (328)
....|..++ +. -|..+..+++..+.+.++.....+- . ++..+...+-+|+....+-.+-..++.+.+++-.
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~ 112 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY 112 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence 455677776 43 4888888888877777665443321 1 1234667777888776677777889999999999
Q ss_pred HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc-cCC
Q 020256 212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS-TKK 288 (328)
Q Consensus 212 avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~-~~~ 288 (328)
-.+=++.|+++.+++++ .+|+.+...+..++....||.+-...+.++ ..|.+.++++.+..+...++.+++.++ ...
T Consensus 113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~ 192 (316)
T KOG1441|consen 113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGES 192 (316)
T ss_pred HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999986 588999999999999999998877665555 589999999999999999999999842 236
Q ss_pred CChHHHHHHHHHHHHHHHH-HHhhhhcccc
Q 020256 289 ENFLPLLGYEVAYLSEKEL-FSYDSFHAQK 317 (328)
Q Consensus 289 ~~~l~l~~~q~l~aai~ll-~~~~~~~~~~ 317 (328)
.+.+.+..++.-.+.+.++ |..+...+..
T Consensus 193 ~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~ 222 (316)
T KOG1441|consen 193 LNSMNLLYYTAPISLIFLLIPFLDYVEGNK 222 (316)
T ss_pred cCchHHHHHhhhHHHHHHhcchHhhhcccc
Confidence 7888899898888888777 7666555433
No 42
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.88 E-value=1.2e-06 Score=81.59 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-h
Q 020256 152 HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-L 229 (328)
Q Consensus 152 ~P~~l~~~R~liA~llLl~~~~~~~~~~~-~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l 229 (328)
.|..-.|+-+.+-+++-.+++..|++..+ .|...+++++.-.-++++...|.|||+-..+.++..-....+.+++|+ +
T Consensus 47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL 126 (336)
T KOG2766|consen 47 APTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL 126 (336)
T ss_pred CccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH
Confidence 36666788888888888887776654322 345566666553334445567889999998898888777778889986 6
Q ss_pred cCcCcHHHHHHHHHHHHhhhhhhcCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 020256 230 GAIIPAHTWFGVLISALGVGMLECSG---------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVA 300 (328)
Q Consensus 230 ~eri~~~~~igl~lg~iGv~ll~~~g---------~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l 300 (328)
|.|.+..++.|++++++|+++++..+ .+...||.+.+++|-+||+.++.-+.+.++. +...+.+..-+
T Consensus 127 ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgL 203 (336)
T KOG2766|consen 127 KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGL 203 (336)
T ss_pred HHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHH
Confidence 88999999999999999999876642 1346899999999999999999888888876 55666666667
Q ss_pred HHHHHHHHH
Q 020256 301 YLSEKELFS 309 (328)
Q Consensus 301 ~aai~ll~~ 309 (328)
+|++++.+-
T Consensus 204 fGaIIsaIQ 212 (336)
T KOG2766|consen 204 FGAIISAIQ 212 (336)
T ss_pred HHHHHHHHH
Confidence 777777554
No 43
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.84 E-value=0.0012 Score=62.54 Aligned_cols=166 Identities=20% Similarity=0.264 Sum_probs=118.9
Q ss_pred hhhHHHHHHHhc----cC----CHHHHHHHHHHHHHHHHHHHHHhccC-C---------------hhhHHHH--HHHHHH
Q 020256 138 ASDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-D---------------VKTRNAG--IELGLW 191 (328)
Q Consensus 138 G~s~i~~K~~~~----~~----~P~~l~~~R~liA~llLl~~~~~~~~-~---------------~~~~~~~--ll~G~l 191 (328)
..+.+..|++-+ +. +|+..+..=|+-=++.+..+.+.+++ + ....+.. +.=.++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 457778887642 22 46666666666666666665554321 0 0011111 111223
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCC-----------CCCc
Q 020256 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG-----------SPPS 259 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g-----------~~~~ 259 (328)
-..+..+.+.|+.+|+++.--.+-+...+|+.+++. ++++++..++|+|+....+|++++-..+ .+..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ii 175 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSII 175 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccch
Confidence 234556778899999998877777888899999996 6899999999999999999998764432 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 020256 260 VGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSE 304 (328)
Q Consensus 260 ~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai 304 (328)
.||++.+.+=+.-|.-.++-+|..++. ..+++..++|+-+++.+
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v 219 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLV 219 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHH
Confidence 899999999999999999999988876 56889999999888843
No 44
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.82 E-value=0.0029 Score=62.03 Aligned_cols=154 Identities=17% Similarity=0.061 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH----hc-------cCChhhHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVF----WA-------RDDVKTRNAGIELGL 190 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~----~~-------~~~~~~~~~~ll~G~ 190 (328)
+...|++..++++++||+.++-.|. ..+.+= +.-+.=..+-.-++.|+.. .+ ..+.+.+...++.|+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w-E~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~ 81 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSW-ETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA 81 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence 4578999999999999999999998 443331 1111101111111112111 11 124455667778888
Q ss_pred HHHHHHHHHHHHHhhcchHHHH-HHHHHHHHHHHHHHHH-hcCcC---c----HHHHHHHHHHHHhhhhhhc----CC--
Q 020256 191 WVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGAII---P----AHTWFGVLISALGVGMLEC----SG-- 255 (328)
Q Consensus 191 l~~~~~~l~~~aL~~tsa~~aa-vI~~~~Pifv~lla~l-l~eri---~----~~~~igl~lg~iGv~ll~~----~g-- 255 (328)
+...+...++.++++...+.+- +-..++-++..++..+ ++|-. + ..-.+|+++.++|+++... .+
T Consensus 82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~ 161 (345)
T PRK13499 82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERK 161 (345)
T ss_pred HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 8888888999999998888874 3456777777777754 45422 1 3567999999999998766 21
Q ss_pred --------CCCcHHHHHHHHHHHHHHHHHH
Q 020256 256 --------SPPSVGDFLNFLSAIFFGIHML 277 (328)
Q Consensus 256 --------~~~~~G~ll~LlaAl~~A~~~I 277 (328)
.++..|.++++++.+.+++|..
T Consensus 162 ~~~~~~~~~~~~KGi~ialisgi~~~~f~~ 191 (345)
T PRK13499 162 MGIKKAEEFNLKKGLILAVMSGIFSACFSF 191 (345)
T ss_pred cccccccccchHhHHHHHHHHHHHHHHHHH
Confidence 1246899999999999999993
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0018 Score=62.27 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=122.2
Q ss_pred hHHHHHHHhccCC-HHH--HHHHHHHHHHHHHHHHHHhc-----cCChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 020256 140 DIPILKAAEEIMH-PAS--FCAVRFVMSAIPFLPFVFWA-----RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (328)
Q Consensus 140 s~i~~K~~~~~~~-P~~--l~~~R~liA~llLl~~~~~~-----~~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a 211 (328)
.-+.-|+++...+ |.. +..++.+...+.+...-..+ +.+++..+..+-..+++....+.-..+++|.+...-
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~ 106 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF 106 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence 4566788776432 333 33478777766655432222 123444444444444433333344568899999999
Q ss_pred HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCCCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 020256 212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPS-VGDFLNFLSAIFFGIHMLRTERISRSTKKE 289 (328)
Q Consensus 212 avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g~~~~-~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~ 289 (328)
.++=...|+++++...+ +|.+++...|.++....+|......++..++ .|..|++...+.-+.+.+..|+..+.. ..
T Consensus 107 tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~-~l 185 (314)
T KOG1444|consen 107 TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSA-NL 185 (314)
T ss_pred HHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccc-cc
Confidence 99999999999999964 6878889999999999999887777666564 589999999999999999999976543 44
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhcc
Q 020256 290 NFLPLLGYEVAYLSEKELFSYDSFHA 315 (328)
Q Consensus 290 ~~l~l~~~q~l~aai~ll~~~~~~~~ 315 (328)
+-..+.+|..+.....++...+.+++
T Consensus 186 ~~~~lv~yNnl~~L~~l~~~~~~~ge 211 (314)
T KOG1444|consen 186 NKFGLVFYNNLLSLPPLLILSFITGE 211 (314)
T ss_pred cceeEEeehhHHHHHHHHHHHHHhcc
Confidence 55667788877777666655555544
No 46
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0011 Score=62.08 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV 198 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~----~~~~~~~~ll~G~l~-~~~~~l 198 (328)
..|..+.+.+..+|....+..|-+....+--.-+..-+++++++.+|+-..... +.+-....+..|++- ...|.+
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHH
Confidence 569999999999999999999987755666677788899999999998765421 233334445556553 467999
Q ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhh
Q 020256 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG 249 (328)
Q Consensus 199 ~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ 249 (328)
...++...+...-+++.++.|.+..+.+++ ++|.++..||++++..+++..
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999975 799999999999887776653
No 47
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.43 E-value=0.0019 Score=61.84 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=95.8
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH--hccC-------Chhh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020256 138 ASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVF--WARD-------DVKT-RNAGIELGLWVSLGYFVEALGLLTSD 207 (328)
Q Consensus 138 G~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~--~~~~-------~~~~-~~~~ll~G~l~~~~~~l~~~aL~~ts 207 (328)
|..|...+.-.+.-=|+.++....++-.++-..... .++. ++++ +++..-.|+..+..-.+-.++++|++
T Consensus 30 ~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVt 109 (349)
T KOG1443|consen 30 GLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVT 109 (349)
T ss_pred HHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeee
Confidence 345555444333233666666655543333222211 1111 1222 24444566555545567778899998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHhhhhhhcCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020256 208 AGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS 285 (328)
Q Consensus 208 a~~aavI~~~~Pifv~lla~ll~-eri~~~~~igl~lg~iGv~ll~~~g~~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~ 285 (328)
.+.-+..=+..++|+.+++.++| ||.++.-..-+++..+|+++....+.++ ..|..+.+++.++-++-..+.+.+.++
T Consensus 110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~ 189 (349)
T KOG1443|consen 110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRN 189 (349)
T ss_pred eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhc
Confidence 88877777889999999999885 8888877777778888888877766665 478888877777766666666666655
Q ss_pred cC
Q 020256 286 TK 287 (328)
Q Consensus 286 ~~ 287 (328)
.|
T Consensus 190 ~~ 191 (349)
T KOG1443|consen 190 QP 191 (349)
T ss_pred Cc
Confidence 43
No 48
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.33 E-value=0.0061 Score=59.57 Aligned_cols=132 Identities=15% Similarity=0.061 Sum_probs=94.8
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-ccC-----ChhhHHHHHHHH--HHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-ARD-----DVKTRNAGIELG--LWVS 193 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~~~-----~~~~~~~~ll~G--~l~~ 193 (328)
+..+|.++++++++++|.+.+..+....+.++.++..+=.+.+.++..+.+.. ++. ++..-.....+| +.++
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf 244 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF 244 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence 35789999999999999999999999999999888877777777776655442 221 111111222222 3344
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 194 ~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
..|.+.-..+++++|....+=.-+..++..++..+ +|+++++..++|.++.++|+++...
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence 55666667788888775544445567777788865 6899999999999999999988654
No 49
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.28 E-value=0.0011 Score=54.88 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=72.7
Q ss_pred HHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhcchH
Q 020256 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAG 209 (328)
Q Consensus 131 lla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l-~~~~~~l~~~aL~~tsa~ 209 (328)
++..++||.+.+++|.+..+.++..-.. |..-....++ +.++.. +++. +..+...|++.+...+.+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll----------~n~~y~--ipf~lNq~GSv~f~~~L~~~dlS 68 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL----------LNPKYI--IPFLLNQSGSVLFFLLLGSADLS 68 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH----------HhHHHH--HHHHHHHHHHHHHHHHHhcCCce
Confidence 3568899999999999887655443321 3222211111 122222 2332 234556677788888888
Q ss_pred HHHHH-HHHHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHhhhhh
Q 020256 210 RASFI-SLFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML 251 (328)
Q Consensus 210 ~aavI-~~~~Pifv~lla~ll~eri-~~~~~igl~lg~iGv~ll 251 (328)
.+.-+ +++.-+++.+.+++++|+. +++.++|+++.+.|+.+.
T Consensus 69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 88766 4788889999999888775 578899999999999764
No 50
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.00 E-value=0.027 Score=46.36 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhh
Q 020256 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 182 ~~~~ll~G~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll 251 (328)
+......-+.....+++...++++.|.+.+ ++-....-+.+.+++.+ +||+++..+++|+.+.++|++.+
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 333333334445677888889999999988 55566777777788864 79999999999999999999876
No 51
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.012 Score=48.26 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+.....|.+...++++.|.+.+ ++-...-.+.+.+.+++ ++|+++..+++|+.+.++|++.+-.
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3344567888899999999988 56667777888888875 7999999999999999999987643
No 52
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.88 E-value=0.017 Score=47.25 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~ 252 (328)
+.+...+++...+++..|.+.+ ++-....-+.+.+++. ++||+++..+++|+.+.++|++.+-
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3345677888889999999888 5556677777888886 5799999999999999999998764
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.86 E-value=0.015 Score=48.73 Aligned_cols=64 Identities=14% Similarity=0.285 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 190 ~l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+++...++++..++++.+.+.+ ++..+..-+.+.+++. +++|+++..+++|+.+.++|++++-.
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3345677888899999999988 4445677788888886 57999999999999999999988744
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.85 E-value=0.018 Score=47.52 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 192 VSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+...++++..+++..|.+.+ ++-.++.-+.+.+++++ ++|+++..+++|+.+.++|++++..
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44567777889999998887 44456667777788864 7999999999999999999998754
No 55
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.83 E-value=0.058 Score=51.45 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh--ccC----------ChhhHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARD----------DVKTRNAGIELGLW 191 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~--~~~----------~~~~~~~~ll~G~l 191 (328)
|+++++++.++=|...+..+...+ +.++.+..++-.+++.++.++.... .+. .+..+...++..+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999998876 5889999999999988888776665 321 11122333344444
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~ 252 (328)
.+.+..+.+.-.+..++...+++..+--+++.+++.+ ++++++..+|+|+++.+.|+.+-.
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence 3444444445567788888888888888888888865 699999999999999999997643
No 56
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.76 E-value=0.038 Score=52.46 Aligned_cols=117 Identities=17% Similarity=0.003 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-H--hccCChhhHHHHHHHHHHHHHHHHHH
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-F--WARDDVKTRNAGIELGLWVSLGYFVE 199 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~-~--~~~~~~~~~~~~ll~G~l~~~~~~l~ 199 (328)
..++++.++++.+.+.....+.|. .+++|....+-. .++.++-..+. . .+....+.-....+.|++...+..++
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPq-aiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~ 212 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQ-AIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY 212 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHH-HHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence 357899999999999888888887 467887665533 33333222221 2 11122233345567888877788888
Q ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHH
Q 020256 200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVL 242 (328)
Q Consensus 200 ~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~ 242 (328)
+.+.+....+.+-.+..+.++...+.+.+ +||+.+++++...+
T Consensus 213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 88999888888888888888888888864 79998877664333
No 57
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.25 E-value=0.12 Score=47.75 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-cc-----C-ChhhHHHHHHHHHHHHHHHHHHHH
Q 020256 129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-AR-----D-DVKTRNAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 129 lllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~~-----~-~~~~~~~~ll~G~l~~~~~~l~~~ 201 (328)
..+.+++.|+...+..|...+. ++......-+. ...+..+.... .. . ..++|...+..|+....+|.++..
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~ 227 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI 227 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899888888886432 32222221111 11111111111 11 1 123666667777765678999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256 202 GLLTSDAGRASFISLFTVIVVPLFDGM 228 (328)
Q Consensus 202 aL~~tsa~~aavI~~~~Pifv~lla~l 228 (328)
|+++.+++.++.+.++.|++..+++.+
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 58
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.17 E-value=0.028 Score=54.09 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=80.4
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~~~~~l~~~ 201 (328)
+...|.++.+++.++-|.+....|......+. ...|---.. ... .+++.|..++++ ...+..+.+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~~---~~~-----l~~~~W~~G~~~---~~~g~~~~~~ 69 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSGG---RSY-----LRRPLWWIGLLL---MVLGEILNFV 69 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccchh---hHH-----HhhHHHHHHHHH---HhcchHHHHH
Confidence 45779999999999999999999986432221 000000000 000 011223333221 2345567778
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 202 aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~ 252 (328)
++.+.|++..+-+.++..++..+++. ++|||++++.++|.++.++|+.++.
T Consensus 70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 99999999999898999999999996 5799999999999999999997654
No 59
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.07 E-value=0.47 Score=45.12 Aligned_cols=116 Identities=10% Similarity=0.091 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHhhhhhhc
Q 020256 180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLEC 253 (328)
Q Consensus 180 ~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~-~~~Pifv~lla~l-l~eri~~~~----~igl~lg~iGv~ll~~ 253 (328)
+.+...++.|++...+...++.+.++..++.+.-+. .++-+...+++.+ ++|.-+..+ .+++++.++|+.+-..
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 566777888988888899999999998888776443 5666777778764 799766433 4577888888887765
Q ss_pred CCC---------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 020256 254 SGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVA 300 (328)
Q Consensus 254 ~g~---------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l 300 (328)
.+. +...|.+..+++.+.|-.|.+..|-. +. ++.....-|.+
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~---~~~~~~lPqai 173 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV---SGWSAFLPQAI 173 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC---ChhHhHHHHHH
Confidence 431 13469999999999999999997653 23 44555555533
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.00 E-value=0.39 Score=41.01 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHhccC-Chh---hH-HHHHHHHHHHHHHHHHHHH
Q 020256 128 FLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DVK---TR-NAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 128 llllla~llWG~s~i~~K~~~~~~~-P~~l~~~R~liA~llLl~~~~~~~~-~~~---~~-~~~ll~G~l~~~~~~l~~~ 201 (328)
++.+++..+-+....+--...+..+ |+.-+++-+..+.+++..+....+. +.+ .. ++..+-|++....-.+..+
T Consensus 4 lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 4 LLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence 4445555555555444444445555 9999999999999998877665432 211 11 2222333333222344556
Q ss_pred HHhhcchHHHHHHH-HHHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHhhhh
Q 020256 202 GLLTSDAGRASFIS-LFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM 250 (328)
Q Consensus 202 aL~~tsa~~aavI~-~~~Pifv~lla~l--l---~eri~~~~~igl~lg~iGv~l 250 (328)
......++.+..+. .-+.+...++..+ + +++++..|++|+++.++|+.+
T Consensus 84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 66777777765443 4456666777764 3 567889999999999999864
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.58 E-value=0.47 Score=46.69 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=75.6
Q ss_pred chHHHHHHHHHHHHHhhhH-------HHHHHHh-ccCCHHHHHHHHHH---HHHHHHHH-HHH---hccCC------h--
Q 020256 123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFLP-FVF---WARDD------V-- 179 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~-------i~~K~~~-~~~~P~~l~~~R~l---iA~llLl~-~~~---~~~~~------~-- 179 (328)
..||++.++++.+..+... +..+.+. .+.++.....-.++ +++++.-+ +.. +++++ +
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 4679999888888887766 4444432 25666666655555 55554432 222 12111 1
Q ss_pred --hhHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHH---HH-HHHHHHHHHHHHHhcCcCc------HHHHHHHHH
Q 020256 180 --KTRNAG----IELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI 243 (328)
Q Consensus 180 --~~~~~~----ll~G~l~~~~~~l~~~aL~~tsa~~aav---I~-~~~Pifv~lla~ll~eri~------~~~~igl~l 243 (328)
+.+.+- .+.|+..+..+.++.+|-...+...+.+ +. ++..++..+-+.++||+.+ +.-++|+++
T Consensus 252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence 112223 5556666666667777766654443333 33 5556666776777898765 344678888
Q ss_pred HHHhhhhhh
Q 020256 244 SALGVGMLE 252 (328)
Q Consensus 244 g~iGv~ll~ 252 (328)
-++|+.++.
T Consensus 332 iI~g~~lig 340 (345)
T PRK13499 332 IILAANIVG 340 (345)
T ss_pred HHHHHHHHh
Confidence 888877664
No 62
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.17 E-value=0.98 Score=43.29 Aligned_cols=119 Identities=8% Similarity=0.049 Sum_probs=83.7
Q ss_pred HHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc---c-----CChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 020256 133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALGLL 204 (328)
Q Consensus 133 a~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~---~-----~~~~~~~~~ll~G~l~~~~~~l~~~aL~ 204 (328)
.++-||..+..=|.. .+|+.+-...-.+.-.++-+.+++.. . .+.+.+......|..-.....++..|-+
T Consensus 156 la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~ 233 (293)
T COG2962 156 LALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK 233 (293)
T ss_pred HHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345666666666653 45665554444444343333333322 1 1223455566778777778889999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 205 TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 205 ~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
..+-+..+++.|..|.+..+++.+ ++|+++..+.++-+..-+|+++...
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI 283 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 5899999999988888888876544
No 63
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.16 E-value=0.14 Score=40.68 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHH
Q 020256 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLI 243 (328)
Q Consensus 191 l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~-ll~eri~~~~~igl~l 243 (328)
.+...++++..++++.+.+.+ ++..++..+.+.+++. +++|+++..+++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 344567788889999999988 5666788888888886 4799999999999875
No 64
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.02 E-value=0.014 Score=55.28 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-c----cCChhhHHHHHHHHHHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A----RDDVKTRNAGIELGLWVSLGYFVEA 200 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~-~----~~~~~~~~~~ll~G~l~~~~~~l~~ 200 (328)
|....+.+++.-+..++..|+...+.+.+..+.+=.+++.+.-++.+.. . ...+++|.....+|++.+.+..+..
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllT 271 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLT 271 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHH
Confidence 4566667777777889999988666655554444444444433322221 1 1235666666678888888899999
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhh
Q 020256 201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG 249 (328)
Q Consensus 201 ~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ 249 (328)
.|+|.-.++-.++..++..++..+... ++++.++...|.|++..+...+
T Consensus 272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v 321 (346)
T KOG4510|consen 272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTV 321 (346)
T ss_pred HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHH
Confidence 999999999999999999999988886 4699999999988776554443
No 65
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.39 E-value=0.32 Score=45.50 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc---C-ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Q 020256 154 ASFCAVRFVMSAIPFLPFVFWAR---D-DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229 (328)
Q Consensus 154 ~~l~~~R~liA~llLl~~~~~~~---~-~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll 229 (328)
..++++....-.+.-=.+...++ . +.+.+... ...+.+...+.....++++.+=-...+--+.-|+=+++++.++
T Consensus 54 laLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~Ya-Acs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 54 LALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYA-ACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHhheeecccccccCCcchHHH-HHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 44555665555544322222222 1 12233322 2333332334444567888775444444566788888888765
Q ss_pred -cCcCcHHHHHHHHHHHHhhhhhhcCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020256 230 -GAIIPAHTWFGVLISALGVGMLECSG--------SPPSVGDFLNFLSAIFFGIHMLRTERISRST 286 (328)
Q Consensus 230 -~eri~~~~~igl~lg~iGv~ll~~~g--------~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~ 286 (328)
+++.++++..+++..++||++....+ .....|.++.++|--.=++-.....|....+
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y 198 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY 198 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhh
Confidence 77889999999999999999876542 1357999999999887777777777766554
No 66
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.67 E-value=3 Score=40.96 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc----c-------CChhhHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA----R-------DDVKTRNAGIELGL 190 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~----~-------~~~~~~~~~ll~G~ 190 (328)
.-+.|+++..++.+.=|+.++-.|..- +.+= +..+.=+.+-+-+++|+...- . .+...+....+.|+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk-~WsW-Es~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVK-GWSW-ESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcC-CccH-HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 347899999999999999999999843 3322 222222333344445554321 1 12345566677888
Q ss_pred HHHHHHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHh--------cCcCcHHHHHHHHHHHHhhhhhhcCC------
Q 020256 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGML--------GAIIPAHTWFGVLISALGVGMLECSG------ 255 (328)
Q Consensus 191 l~~~~~~l~~~aL~~tsa~~a-avI~~~~Pifv~lla~ll--------~eri~~~~~igl~lg~iGv~ll~~~g------ 255 (328)
+-..+-..+-.+++|...+.. ++...+.-++-.++-.++ ..+-....++|+++.++|++++-..|
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 766666666677778766555 344455554444443332 22333577899999999999875542
Q ss_pred -------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 020256 256 -------SPPSVGDFLNFLSAIFFGIHMLRTER 281 (328)
Q Consensus 256 -------~~~~~G~ll~LlaAl~~A~~~I~~rk 281 (328)
.++..|.+++++|.+.-|++.+-...
T Consensus 162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 13468999999999999988876543
No 67
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.29 E-value=4.5 Score=35.22 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHhcc-C-C----hhhHHHHHHHHHHHHHHHH
Q 020256 125 RSIFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWAR-D-D----VKTRNAGIELGLWVSLGYF 197 (328)
Q Consensus 125 ~g~llllla~llWG~s~i~~K~~~~~~-~P~~l~~~R~liA~llLl~~~~~~~-~-~----~~~~~~~ll~G~l~~~~~~ 197 (328)
...+..+++..+-.....+.-...... +|+.-.++-|+.+..+++.+.+.+. . . .+.-++...-| .++..|.
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG-~lGa~~v 83 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGG-LLGAIFV 83 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHcc-chhhhhh
Confidence 344555555555554444443433444 5999999999999988887766532 1 1 11112222223 2222222
Q ss_pred H-HHHHHhhcc-hHHHHHHHHHHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHhhhhh
Q 020256 198 V-EALGLLTSD-AGRASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 198 l-~~~aL~~ts-a~~aavI~~~~Pifv~lla~l--l---~eri~~~~~igl~lg~iGv~ll 251 (328)
+ ......... +....++..-+.+...++..+ + +++++..+++|+++.++|++++
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 1 112222232 333345556677777777754 3 3567899999999999995554
No 68
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=0.19 Score=47.96 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCC---CCC-cHHHHHHHHHHHHH
Q 020256 198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG---SPP-SVGDFLNFLSAIFF 272 (328)
Q Consensus 198 l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g---~~~-~~G~ll~LlaAl~~ 272 (328)
+-+.+..+-..+. ++.-+|..++.++ +|++-+..-..+.++.++|-.+=...+ +.+ ..|.+++++|.++-
T Consensus 123 L~yVgVaFYyvgR-----sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 123 LKYVGVAFYYVGR-----SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred hhhcceEEEEecc-----chhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence 3344444444444 4566788889975 688877777777777777765433222 123 68999999999999
Q ss_pred HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHhhhhcc-ccccccc
Q 020256 273 GIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSYDSFHA-QKIFNFQ 322 (328)
Q Consensus 273 A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~~~~~~-~~~~~f~ 322 (328)
|+..+..||..... ......+++|....+.+..+|.....++ +.+.+|+
T Consensus 198 Alnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~ 247 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP 247 (347)
T ss_pred HHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc
Confidence 99999999876554 3356788999999999988888777765 4666655
No 69
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.13 E-value=8.7 Score=37.26 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Q 020256 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (328)
Q Consensus 152 ~P~~l~~~R~liA~llLl~~~~~~~---~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l 228 (328)
++..+++..-+.+.+.-..++..++ ..++.|.....+++.....-.+.+.+++|.+=-.-.+-=+.-.+=++++..+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L 129 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL 129 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence 5667777777776666544443332 2334466666777777667788999999986322222222223334455555
Q ss_pred -hcCcCcHHHHHHHHHHHHhhhhhhc-CC-C--------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 020256 229 -LGAIIPAHTWFGVLISALGVGMLEC-SG-S--------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297 (328)
Q Consensus 229 -l~eri~~~~~igl~lg~iGv~ll~~-~g-~--------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~ 297 (328)
.++|.+..+.+...+.-.|+.+... +. + +..+|.++....-+.=++-+...+++-++. ..+.+.++++
T Consensus 130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~ 208 (327)
T KOG1581|consen 130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG 208 (327)
T ss_pred HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence 5889998888888888889876433 21 1 235888888888877777777788877754 6678888888
Q ss_pred HHHHHHHHHHH
Q 020256 298 EVAYLSEKELF 308 (328)
Q Consensus 298 q~l~aai~ll~ 308 (328)
..++.++....
T Consensus 209 vNLf~~i~~~~ 219 (327)
T KOG1581|consen 209 VNLFSAILNGT 219 (327)
T ss_pred HHHHHHHHHHH
Confidence 87777776544
No 70
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=92.42 E-value=1.1 Score=44.59 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHhc---cCCh------hhHHHHHHHH
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEEI----MHPASFCAVRFVMSAIPFLPFVFWA---RDDV------KTRNAGIELG 189 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~~----~~P~~l~~~R~liA~llLl~~~~~~---~~~~------~~~~~~ll~G 189 (328)
...|.++.+++++++|..-++.|.-.++ +|--.+..+=.++..++++|.++.- +.++ .+....++.|
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 3789999999999999999999986542 5555555555666677777554421 2111 1222223334
Q ss_pred HHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCC
Q 020256 190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG 255 (328)
Q Consensus 190 ~l~-~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g 255 (328)
+.. .+.-+++.+|.-.+++-.+++-++++.-+.++...++ +++++...++|.+..++|-+++...+
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 332 3456888899999998888877776665666666777 55678999999999999988776543
No 71
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.63 E-value=0.037 Score=51.79 Aligned_cols=155 Identities=10% Similarity=0.051 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHHHHH
Q 020256 126 SIFLLNVITIVYASDIPIL-KAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEALG 202 (328)
Q Consensus 126 g~llllla~llWG~s~i~~-K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~--~~~~~~~~~ll~G~l~~~~~~l~~~a 202 (328)
.++..++-++.||+...+. |. +=+|.+-..---+-|.++-+.+.+..+ .+.+.+...++.|.+...+...++-+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka 79 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA 79 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence 4677788899999875543 43 233443332222222222222222222 34556667777888877788889999
Q ss_pred HhhcchHHHHHHH-HHHHHHHHHHHHH-hcCcCcH----HHHHHHHHHHHhhhhhhcCCC---------CCcHHHHHHHH
Q 020256 203 LLTSDAGRASFIS-LFTVIVVPLFDGM-LGAIIPA----HTWFGVLISALGVGMLECSGS---------PPSVGDFLNFL 267 (328)
Q Consensus 203 L~~tsa~~aavI~-~~~Pifv~lla~l-l~eri~~----~~~igl~lg~iGv~ll~~~g~---------~~~~G~ll~Ll 267 (328)
+++..++++.-+. .++-+-+.+++.+ ++|.-+. ...+++++.++|+.+-...+. ++..|....+.
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i 159 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI 159 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence 9999888876443 4555566666654 6886553 234667777788876554321 23467777788
Q ss_pred HHHHHHHHHHHHHHhh
Q 020256 268 SAIFFGIHMLRTERIS 283 (328)
Q Consensus 268 aAl~~A~~~I~~rkl~ 283 (328)
|.++|-.|.++.+...
T Consensus 160 St~GYv~yvvl~~~f~ 175 (288)
T COG4975 160 STLGYVGYVVLFQLFD 175 (288)
T ss_pred eccceeeeEeeecccc
Confidence 8888888887776654
No 72
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=91.63 E-value=1.3 Score=41.16 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=103.7
Q ss_pred HHHHHHHhccC--C-HHHHHHHHHHHHHHHHHHHHHhc----c-CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 020256 141 IPILKAAEEIM--H-PASFCAVRFVMSAIPFLPFVFWA----R-DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRAS 212 (328)
Q Consensus 141 ~i~~K~~~~~~--~-P~~l~~~R~liA~llLl~~~~~~----~-~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aa 212 (328)
.+.-|+.++.. . -+.+.+++.+...+.++.+-..+ | .+.+.|.. ..+++..--+.-.-+++|.+...-+
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~Wfp---iSfLLv~MIyt~SKsLqyL~vpiYT 98 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFP---ISFLLVVMIYTSSKSLQYLAVPIYT 98 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcC---HHHHHHHHHHhcccceeeeeeeHHH
Confidence 34456665532 2 35666777776666555432222 1 12233322 2222211112233578888888777
Q ss_pred HHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhcCCC--------CCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 020256 213 FISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERIS 283 (328)
Q Consensus 213 vI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~~g~--------~~~~G~ll~LlaAl~~A~~~I~~rkl~ 283 (328)
+.-.+..+.++.... ++|.|++.......++.++.-+.-..++. .++.|.+|+..-.+.-|.+.+..|+..
T Consensus 99 iFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri 178 (309)
T COG5070 99 IFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRI 178 (309)
T ss_pred HhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhh
Confidence 777777777777775 57999998888887777776665555442 357999999999999999999999866
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHhhh
Q 020256 284 RSTKKENFLPLLGYEVAYLSEKELFSYDS 312 (328)
Q Consensus 284 ~~~~~~~~l~l~~~q~l~aai~ll~~~~~ 312 (328)
+-. ...-...++|..+.+.-+++.....
T Consensus 179 ~lt-Nf~d~dtmfYnNllslPiL~~~s~~ 206 (309)
T COG5070 179 KLT-NFKDFDTMFYNNLLSLPILLSFSFL 206 (309)
T ss_pred ccc-ccchhhHHHHhhhHHHHHHHHHHHH
Confidence 533 2234556777776665444444333
No 73
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=90.19 E-value=0.87 Score=44.32 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhc----cCCHHHHHHHHHHHHHHHHH-HHHHhccCCh------hhH----HHHHH
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDV------KTR----NAGIE 187 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~----~~~P~~l~~~R~liA~llLl-~~~~~~~~~~------~~~----~~~ll 187 (328)
...|.+....+.+......++.|.... +++++.+...---++.+.++ |+......+. +.| ....+
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 367999999999999999999998883 48999998888888888888 8765432111 111 11122
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhh
Q 020256 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE 252 (328)
Q Consensus 188 ~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~ 252 (328)
..++.+..+...++-+..+++-.-.+...+==+++.+.++ +++++++..+.+|.+++++|+.+-.
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 2233333445566777778777666555444444555665 4688888999999999999998653
No 74
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=89.85 E-value=3.3 Score=37.37 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l 250 (328)
...+..+..+-+++.++..-++...+.++++.+++.+ ++|+++..+|+|+.+.+.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455666788999998999999999999999974 6999999999999999998753
No 75
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=88.22 E-value=1.7 Score=36.46 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc----CCCChHHHHHHHHHHHHHHHHHHhhhhc
Q 020256 261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEVAYLSEKELFSYDSFH 314 (328)
Q Consensus 261 G~ll~LlaAl~~A~~~I~~rkl~~~~----~~~~~l~l~~~q~l~aai~ll~~~~~~~ 314 (328)
|.+++++|.++.|++.++.|+..++. ...++..+..+....+.+.+++.....+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e 58 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLE 58 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999988874 4678899999988888888877665554
No 76
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.81 E-value=8.4 Score=37.36 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc----------CChhhHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELG 189 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~~~----------~~~~~~~~~ll~G 189 (328)
+...|+++++.-.++=|.+....+.... .++++.+.+.--+...+.=.......+ .+++.++..++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 3467888888777777888777777665 488888877766666655444433222 1334456666777
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256 190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (328)
Q Consensus 190 ~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l 250 (328)
.+...+..+.++-++.-.+-.-+.|+-+==++..+++.+ ++++++..+|+|+.+.|.|+.+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 666666655555555433333344444555666677764 7999999999999999988864
No 77
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=86.83 E-value=5.9 Score=32.65 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHhccCC----H--HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 020256 128 FLLNVITIVYASDIPILKAAEEIMH----P--ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL 201 (328)
Q Consensus 128 llllla~llWG~s~i~~K~~~~~~~----P--~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~~~~~l~~~ 201 (328)
..++...++||.+.+++|.+..+.+ | ....++|-..... .+++.+... + +.-.+..+|++
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~iPF---l-lNqcgSaly~~ 71 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLIPF---L-LNQCGSALYYL 71 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHHHH---H-HHHhhHHHHHH
Confidence 4467788999999999998765432 2 1111111111000 011222221 1 12234456667
Q ss_pred HHhhcchHHHH-HHHHHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHhhhhh
Q 020256 202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGML 251 (328)
Q Consensus 202 aL~~tsa~~aa-vI~~~~Pifv~lla~ll~eri~-~~~~igl~lg~iGv~ll 251 (328)
-++.++-+.+. +-+++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.
T Consensus 72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 77777766654 3456677888888888999987 67789999999998764
No 78
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=81.54 E-value=10 Score=36.42 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=58.3
Q ss_pred HHHHHh-cCcCcHHHHHHHHHHHHhhhhhhcCCC----CC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 020256 224 LFDGML-GAIIPAHTWFGVLISALGVGMLECSGS----PP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297 (328)
Q Consensus 224 lla~ll-~eri~~~~~igl~lg~iGv~ll~~~g~----~~-~~G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~ 297 (328)
+.+.++ ++|.+...+++..+..+|+++....+. ++ ..|..+.-++-++=|+---+.+|..+.. +.+...+.++
T Consensus 148 iggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~-~~ss~Emvfy 226 (367)
T KOG1582|consen 148 IGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMN-PASSSEMVFY 226 (367)
T ss_pred heeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhC-CCCcceEEEe
Confidence 344454 788999999999999999988766553 33 4788887777777777767777777665 4455666666
Q ss_pred HHHHHHHHHH
Q 020256 298 EVAYLSEKEL 307 (328)
Q Consensus 298 q~l~aai~ll 307 (328)
...++...++
T Consensus 227 Sy~iG~vflf 236 (367)
T KOG1582|consen 227 SYGIGFVFLF 236 (367)
T ss_pred eecccHHHHH
Confidence 6666555443
No 79
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=79.65 E-value=17 Score=34.36 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHhcc----------CChhhHHHHHHHHHHH
Q 020256 125 RSIFLLNVITIVYASDIPILKAAEEIM--HPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGLWV 192 (328)
Q Consensus 125 ~g~llllla~llWG~s~i~~K~~~~~~--~P~~l~~~R~liA~llLl~~~~~~~----------~~~~~~~~~ll~G~l~ 192 (328)
.|-++++++-.+=|.+.......-.+. +.-.+.+.--+-+.+.+..-++..+ +....|....++++..
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 356666666666666666544332211 1112222222333333322222111 1222344555666655
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhh
Q 020256 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (328)
Q Consensus 193 ~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~l 250 (328)
..+..+.+.-+.+-++-.-+++..+--.|+.+.+.+ ++..++.+||+|.++.|.|..+
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 555555555555555555566666777888888875 6889999999999999999865
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=76.12 E-value=10 Score=35.88 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~~~~~~ll~G~l~~~~~~l~~~aL~~ 205 (328)
|++..+++++++|++++-+|.. +.-|++.+-++-...-.+.-+.+...+. ..+-.....+-|.+...+..+-.-.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~-~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILG-FPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 4677889999999999999974 4457766555544332222222222222 1222334445555555555555566777
Q ss_pred cchHHHHHHHHHHHHHHHHH-HHH--hc---CcC--cHHHHHHHHHHHHhhhhhhc--CC--------------------
Q 020256 206 SDAGRASFISLFTVIVVPLF-DGM--LG---AII--PAHTWFGVLISALGVGMLEC--SG-------------------- 255 (328)
Q Consensus 206 tsa~~aavI~~~~Pifv~ll-a~l--l~---eri--~~~~~igl~lg~iGv~ll~~--~g-------------------- 255 (328)
...+.+-.|-++.-+++--. +.+ ++ |.+ +...++|+++.++|..+... ++
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE 158 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence 77677666665544443322 222 32 222 25778999999999876533 10
Q ss_pred --CC------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020256 256 --SP------------------PSVGDFLNFLSAIFFGIHMLRTERISRST 286 (328)
Q Consensus 256 --~~------------------~~~G~ll~LlaAl~~A~~~I~~rkl~~~~ 286 (328)
.+ -..|.++++++++.|+...+=...+.++.
T Consensus 159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00 12688999999999999888777665543
No 81
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=74.30 E-value=4 Score=32.17 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHh
Q 020256 270 IFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFSY 310 (328)
Q Consensus 270 l~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~~ 310 (328)
++||.+.+..|+..++. ++...++++...+++ .++..
T Consensus 1 ~~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~ 37 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILL 37 (126)
T ss_pred ceeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHH
Confidence 47899999999988875 788899999999887 44443
No 82
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.85 E-value=2.1 Score=41.63 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred cccchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHHH-HHHHHH
Q 020256 120 ASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLW-VSLGYF 197 (328)
Q Consensus 120 ~~~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~-~~~~~ll~G~l-~~~~~~ 197 (328)
+.+...|..+.+.+.++.|+++.+-|........ ...|.--+.- +.-+. .|+. |++ +.++-.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra~~gg~---------~yl~~~~Ww~----G~ltm~vGei 79 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRAGEGGY---------GYLKEPLWWA----GMLTMIVGEI 79 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccccCCCc---------chhhhHHHHH----HHHHHHHHhH
Confidence 3456889999999999999999999986543221 1111100000 00011 2222 222 223344
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 198 l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
.-+.+..+.|++..+-+-++..+...+++. +++|+++....+|.+++++|-.+++.
T Consensus 80 ~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 80 ANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred hhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 445566678888888888888999999996 57999999999999999999876543
No 83
>PRK02237 hypothetical protein; Provisional
Probab=70.55 E-value=47 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 223 PLFDGML-GAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 223 ~lla~ll-~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
.+..+.. |+|+++..++|..++++|+.++..
T Consensus 74 l~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 74 LLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3444555 788999999999999999988753
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=65.34 E-value=5.7 Score=37.58 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=53.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhc--cCChhhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 020256 149 EIMHPASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFD 226 (328)
Q Consensus 149 ~~~~P~~l~~~R~liA~llLl~~~~~~--~~~~~~~~~~ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla 226 (328)
++.+.+.--++-++++++++-. .+ ++..+.-..-.+.|+..+.++.+++++-+....+.+=-+..+..+...+-.
T Consensus 177 ~g~saiLPqAiGMv~~ali~~~---~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGG 253 (288)
T COG4975 177 DGLSAILPQAIGMVIGALILGF---FKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGG 253 (288)
T ss_pred cchhhhhHHHHHHHHHHHHHhh---cccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecce
Confidence 4555555555555665555431 22 111222233456777777777777777665554444334444454445545
Q ss_pred H-HhcCcCcHHHHHH----HHHHHHhhhh
Q 020256 227 G-MLGAIIPAHTWFG----VLISALGVGM 250 (328)
Q Consensus 227 ~-ll~eri~~~~~ig----l~lg~iGv~l 250 (328)
. ++|||.+++++.. +++.++|..+
T Consensus 254 Il~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 254 ILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred EEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 4 5799999887654 4444444443
No 85
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=64.65 E-value=2.2 Score=40.98 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHH--HhcCcCc-HHHHHHHHHHHHhhhhhhcC---CCCCcHHHHHH
Q 020256 206 SDAGRASFISLFTVIVVPLFDG--MLGAIIP-AHTWFGVLISALGVGMLECS---GSPPSVGDFLN 265 (328)
Q Consensus 206 tsa~~aavI~~~~Pifv~lla~--ll~eri~-~~~~igl~lg~iGv~ll~~~---g~~~~~G~ll~ 265 (328)
.+-+...++.+...+++.|+.. ++|+|+- +...+++++.++-+++...- +..+..|.++.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l 112 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVIL 112 (381)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444445666666655554443 4677764 66667766666554433221 22344565543
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=64.50 E-value=26 Score=33.08 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.2
Q ss_pred ccchHHHHHHHHHHHHHhhhHHHHHHHhccC
Q 020256 121 SKKIRSIFLLNVITIVYASDIPILKAAEEIM 151 (328)
Q Consensus 121 ~~~~~g~llllla~llWG~s~i~~K~~~~~~ 151 (328)
.||+.|.++.+++.++.|++++-+++..++-
T Consensus 179 ~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 179 KKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 4578899999999999999999999987654
No 87
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.01 E-value=68 Score=31.28 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFV 172 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~ 172 (328)
..|+.+++...+.=....+..|.-.+ +..-+.+.++--+++.+.+..+.
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~ 206 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILS 206 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHH
Confidence 34666666666666666666666554 45556666666666666655544
No 88
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=62.14 E-value=11 Score=31.54 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhh
Q 020256 207 DAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGV 248 (328)
Q Consensus 207 sa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv 248 (328)
..-.++++.|..|++..+++.+++..+....+.+++.+++|.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888877776655544444555555554444
No 89
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=61.48 E-value=52 Score=27.05 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=26.0
Q ss_pred HHHHHHHHHh-cCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 220 IVVPLFDGML-GAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 220 ifv~lla~ll-~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+...+..+.. |+++++..++|..++++|+.++..
T Consensus 69 ~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 69 VASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 3334444555 788899999999999999988764
No 90
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=59.24 E-value=17 Score=31.52 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHh
Q 020256 202 GLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247 (328)
Q Consensus 202 aL~~tsa~~aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iG 247 (328)
|+.--+.-.++++.|+.|++..+++.++-+.+...+.+.++.+++|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg 113 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLG 113 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344455667888899999988887766444444444433333333
No 91
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=59.17 E-value=1.2e+02 Score=27.37 Aligned_cols=18 Identities=0% Similarity=0.095 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 020256 129 LLNVITIVYASDIPILKA 146 (328)
Q Consensus 129 lllla~llWG~s~i~~K~ 146 (328)
++.+-+++.|....+.+-
T Consensus 89 ~~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333444555666655553
No 92
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=55.06 E-value=17 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh
Q 020256 206 SDAGRASFISLFTVIVVPLFDGML 229 (328)
Q Consensus 206 tsa~~aavI~~~~Pifv~lla~ll 229 (328)
.+.-.++++.|+.|++..+++..+
T Consensus 72 ~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 72 GSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888877766443
No 93
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=54.73 E-value=2.2e+02 Score=27.99 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHHH-hccCC-------hh-----h-HHH
Q 020256 124 IRSIFLLNVITIVYASDIPILKAAEEIM-----HPASFCAVRFVMSAIPFLPFVF-WARDD-------VK-----T-RNA 184 (328)
Q Consensus 124 ~~g~llllla~llWG~s~i~~K~~~~~~-----~P~~l~~~R~liA~llLl~~~~-~~~~~-------~~-----~-~~~ 184 (328)
+.|..++..+.++=|.-|.+.+..+.+- +|+...+-=.-.-.+.++|..+ .++.. .+ . ++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 5688888899999999999998877643 3554444333333444444333 33210 00 1 111
Q ss_pred H---HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHhhhhh
Q 020256 185 G---IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 185 ~---ll~G~l~~~~~~l~~~aL~~tsa~~aavI~~~~Pifv~lla~-ll~eri~~~~~igl~lg~iGv~ll 251 (328)
. .+.|.+.+.--...+.=+..|+.-..++.--.--+.+.+++. +.+++++...|.|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 1 112222111111122222233332222222222344555665 468999999999999999999765
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=54.51 E-value=1.6e+02 Score=26.29 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=29.9
Q ss_pred hcCcCcHHHHHHHHHHHHhhhhhhcCCC--------CCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020256 229 LGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAIFFGIHMLRTERISRS 285 (328)
Q Consensus 229 l~eri~~~~~igl~lg~iGv~ll~~~g~--------~~~~G~ll~LlaAl~~A~~~I~~rkl~~~ 285 (328)
++++.+..+|.++..-..|+..+..++. +...|....+.+.++-++..++.++..++
T Consensus 46 l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~ 110 (222)
T TIGR00803 46 LVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKD 110 (222)
T ss_pred HHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccC
Confidence 3444555555555444444443322221 12355555666666666677777776554
No 95
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=53.22 E-value=1.2e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHh-cCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 226 DGML-GAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 226 a~ll-~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
.++. |.++.+..|+|.+++++|+.++..
T Consensus 76 ~~~Vdg~~pdr~D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 76 LWVVDGVRPDRYDWIGAAICLAGVAVILF 104 (109)
T ss_pred HHHHcCcCCcHHHhhhHHHHHhceeeeEe
Confidence 3444 678889999999999999987654
No 96
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=52.35 E-value=90 Score=29.39 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=12.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Q 020256 150 IMHPASFCAVRFVMSAIPFLPFV 172 (328)
Q Consensus 150 ~~~P~~l~~~R~liA~llLl~~~ 172 (328)
+..-++..++.-+++..+++.+-
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s 204 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFS 204 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHH
Confidence 34444555555566555555443
No 97
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=50.20 E-value=2.4e+02 Score=27.04 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH
Q 020256 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFS 309 (328)
Q Consensus 261 G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~ 309 (328)
+.+...+++++..+-.=..++..+.--|. -.-|...++.++.++.
T Consensus 215 slv~v~iAa~sLllDFd~Ie~~v~~gaPk----~~eW~~AfGL~vTLVW 259 (274)
T PF12811_consen 215 SLVVVGIAALSLLLDFDFIEQGVRQGAPK----KMEWYAAFGLLVTLVW 259 (274)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCCh----hhHHHHHHHHHHHHHH
Confidence 34444555556555555555554432121 2346777776666653
No 98
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=48.74 E-value=2.1e+02 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR 176 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~ 176 (328)
|++++.+..+.+-.--+..|. .++|++...+=..++..-++.+.+.++
T Consensus 301 giLFI~LTF~~fflfE~~~~~---~iHpiQY~LVGlAl~lFYlLLLSlSEh 348 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKL---RIHPIQYLLVGLALVLFYLLLLSLSEH 348 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554444444444444443 699999888876666665555555443
No 99
>PRK11715 inner membrane protein; Provisional
Probab=48.45 E-value=2.4e+02 Score=28.89 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 020256 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR 176 (328)
Q Consensus 126 g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~ 176 (328)
|++++.+..+.+-.--+..|. .++|++...+=...+..-++.+.+.++
T Consensus 307 giLFI~LTF~~fFlfE~~~~~---~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKKL---RIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---eecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555554444444444443 699999888877776666666655544
No 100
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=48.07 E-value=25 Score=33.60 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChh----hHHH--HHHHHHHHHHH
Q 020256 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK----TRNA--GIELGLWVSLG 195 (328)
Q Consensus 122 ~~~~g~llllla~llWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~~~~~~~~~~----~~~~--~ll~G~l~~~~ 195 (328)
+..+|-+++++++-+++.+.+.-.+...+.|-.++...=.++++++-.+=....+.+.+ ++.. .+...+.++..
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLL 242 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHH
Confidence 34678888999999999999999999899999999888888888877655444432221 1221 11222223333
Q ss_pred HHHHHHHHhhcchHH--HHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 196 YFVEALGLLTSDAGR--ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 196 ~~l~~~aL~~tsa~~--aavI~~~~Pifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
|.+.-.=++..+++. -+++. .-.+..++ ..++-++.+...++......|..+-..
T Consensus 243 Ysl~pil~k~~~aT~~nlslLT--sDmwsl~i-~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLT--SDMWSLLI-RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHhhHHheecCCceEEEhhHhH--HHHHHHHH-HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 333333344333332 23332 23333333 556667888888888888888776533
No 101
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=47.76 E-value=2.1e+02 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020256 260 VGDFLNFLSAIFFGIHMLRTER 281 (328)
Q Consensus 260 ~G~ll~LlaAl~~A~~~I~~rk 281 (328)
...+.+.++|+.+..|.++=-.
T Consensus 195 ~~~vya~lgAllf~~yl~~Dtq 216 (237)
T KOG2322|consen 195 LVMVYAALGALLFCGYLVYDTQ 216 (237)
T ss_pred HHHHHHHHHHHHHhHHHHhhhH
Confidence 5567788888999988876433
No 102
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=46.96 E-value=2.9e+02 Score=27.04 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHHhhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh----c-cC--------ChhhHH----
Q 020256 123 KIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW----A-RD--------DVKTRN---- 183 (328)
Q Consensus 123 ~~~g~llllla~llWG~s~i~~K~~~~--~~~P~~l~~~R~liA~llLl~~~~~----~-~~--------~~~~~~---- 183 (328)
.+.|.++++++-++-+..++.-...+. +++|.+.+.+..+++..++..+... . .+ ...+|.
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 356788888888888887776554443 6999999999999886554433321 1 10 122221
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhh
Q 020256 184 --------AGIELGLWVSLGYFVEALGLL---TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 184 --------~~ll~G~l~~~~~~l~~~aL~---~tsa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll 251 (328)
...+.|......+ +-+.|+. +.++++=.++-++=..++=+++.. -.|.....++.|.++-..|+.+-
T Consensus 254 ~~~e~p~l~val~~~~vSiAf-fNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 254 ALQESPSLAVALIGFTVSIAF-FNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HhcCCchhHHHHhhhhhheee-eeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333322211 1122332 356666666665544444444443 46889999999999999998764
No 103
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=40.50 E-value=5.1e+02 Score=28.10 Aligned_cols=25 Identities=4% Similarity=0.077 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Q 020256 153 PASFCAVRFVMSAIPFLPFVFWARD 177 (328)
Q Consensus 153 P~~l~~~R~liA~llLl~~~~~~~~ 177 (328)
-..+..+|..++++.+..++.+...
T Consensus 92 ~~~~~~lk~~lag~~~~~~l~~~~~ 116 (843)
T PF09586_consen 92 ILLLIILKIGLAGLFFYLYLRKFKK 116 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456788999999998876655443
No 104
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=40.43 E-value=3.5e+02 Score=27.35 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=36.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHH---hcCcCcHHHH--HHHHHHHHhhhhhhcCCCCCcHHH-HHHHHHHHHHHHHHHH
Q 020256 205 TSDAGRASFISLFTVIVVPLFDGM---LGAIIPAHTW--FGVLISALGVGMLECSGSPPSVGD-FLNFLSAIFFGIHMLR 278 (328)
Q Consensus 205 ~tsa~~aavI~~~~Pifv~lla~l---l~eri~~~~~--igl~lg~iGv~ll~~~g~~~~~G~-ll~LlaAl~~A~~~I~ 278 (328)
+.+.+.++++..+-.+.-.+++.+ +.+|++..+. .++++..+|.. .+...+ ..+. .-.++..++-|+.+++
T Consensus 43 gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~--iR~~~~-~~~L~~gt~l~G~gIav~nVL 119 (395)
T COG2807 43 GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGIL--IRSLGG-LPLLFLGTLLAGAGIAVINVL 119 (395)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHH--HHhccc-HHHHHHHHHHHHhhHHHHHHh
Confidence 456666666665433333455543 5677775554 44444444443 333211 1111 1134444555555655
Q ss_pred HHHhhh
Q 020256 279 TERISR 284 (328)
Q Consensus 279 ~rkl~~ 284 (328)
.--+.|
T Consensus 120 LPslIK 125 (395)
T COG2807 120 LPSLIK 125 (395)
T ss_pred hhHHHH
Confidence 544443
No 105
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=36.33 E-value=3.4e+02 Score=26.38 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcCC
Q 020256 207 DAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (328)
Q Consensus 207 sa~~aavI~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~g 255 (328)
.+..++.+...-=-.+.+++++ +-++++.....+.++.+.|+.+=..+.
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3334444433334566677765 577788877778888889998755443
No 106
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.17 E-value=84 Score=25.63 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCcCcHHHHHHHHHHHHhhhhhhc
Q 020256 220 IVVPLFDGMLGAIIPAHTWFGVLISALGVGMLEC 253 (328)
Q Consensus 220 ifv~lla~ll~eri~~~~~igl~lg~iGv~ll~~ 253 (328)
+|++.-...++|++.+..+.|.++...|+.+++.
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 4444333457999999999998888888887754
No 107
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.84 E-value=4.9e+02 Score=26.55 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHH---HHhcCcCcHHHHHHHHHHHHhhhhh
Q 020256 181 TRNAGIELGLWVSLGYFVEALGLL-TSDAGRASFISLFTVIVVPLFD---GMLGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 181 ~~~~~ll~G~l~~~~~~l~~~aL~-~tsa~~aavI~~~~Pifv~lla---~ll~eri~~~~~igl~lg~iGv~ll 251 (328)
+....+++|+.+...|.+ .+++. |.+=..|=++.+ .....++-. .++|.+....-+.+++.++=|++.+
T Consensus 324 HpiQY~LVGlAl~lFYlL-LLSlSEhi~F~~AYliAa-~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~ 396 (430)
T PF06123_consen 324 HPIQYLLVGLALVLFYLL-LLSLSEHIGFNLAYLIAA-LACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYV 396 (430)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHhhhchHHHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 445667777766554433 23332 233222222222 222222221 2355555555556666666665543
No 108
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=32.64 E-value=1.6e+02 Score=21.11 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020256 236 HTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRS 285 (328)
Q Consensus 236 ~~~igl~lg~iGv~ll~~~g~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~ 285 (328)
..++|.++.++|++++..|| .|.+..+++-..+|...-..||+.++
T Consensus 4 v~v~G~~lv~~Gii~~~lPG----pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG----PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC----CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35788889999999887775 36777777777777777777776543
No 109
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=28.89 E-value=2.2e+02 Score=27.62 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred HHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC---C----------C----C---CcHHHHHHHHHHHHHHHHH
Q 020256 218 TVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS---G----------S----P---PSVGDFLNFLSAIFFGIHM 276 (328)
Q Consensus 218 ~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~---g----------~----~---~~~G~ll~LlaAl~~A~~~ 276 (328)
.++..+++.|+ +|+|.+.+|+.++++.-+|+++-... + + + +..|..+...+-+.-|...
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 45666788886 58899999999999999999864321 1 0 0 2367777777777777777
Q ss_pred HHHHHhhhccCCCChHHHHHHH
Q 020256 277 LRTERISRSTKKENFLPLLGYE 298 (328)
Q Consensus 277 I~~rkl~~~~~~~~~l~l~~~q 298 (328)
++.+..-++++ ..+-...+|.
T Consensus 181 iyqE~~Y~kyG-Kh~~EalFyt 201 (330)
T KOG1583|consen 181 IYQETTYQKYG-KHWKEALFYT 201 (330)
T ss_pred HHHHHHHHHhc-CChHHHHHHH
Confidence 77776666653 2344444444
No 110
>COG2510 Predicted membrane protein [Function unknown]
Probab=28.42 E-value=2.3e+02 Score=24.30 Aligned_cols=46 Identities=13% Similarity=-0.015 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH
Q 020256 261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEVAYLSEKELFS 309 (328)
Q Consensus 261 G~ll~LlaAl~~A~~~I~~rkl~~~~~~~~~l~l~~~q~l~aai~ll~~ 309 (328)
-.++++++|+++++..+..|--.++.|| ..-+....++..+.+...
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp---~~At~IRtiVi~~~l~~v 49 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDP---DFATTIRTIVILIFLLIV 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCc---cHHHHHHHHHHHHHHHHH
Confidence 3578999999999999988877776644 334444444444444333
No 111
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.24 E-value=3.3e+02 Score=23.76 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=16.2
Q ss_pred HHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Q 020256 136 VYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLP 170 (328)
Q Consensus 136 lWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~ 170 (328)
+-.+.++..+. .-+++|+...+.-+++-++-++.
T Consensus 80 f~~~y~l~~~~-~~dvP~~~~~~~S~~~Fg~gllG 113 (153)
T PF11947_consen 80 FVVFYYLKSRQ-IVDVPPWAVLLVSLVFFGLGLLG 113 (153)
T ss_pred HHHHHHHHhcc-ccccCchHHHHHHHHHHHHHHHh
Confidence 33344444443 33577766655554444444333
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=25.01 E-value=7.5e+02 Score=25.25 Aligned_cols=30 Identities=7% Similarity=-0.113 Sum_probs=22.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 020256 254 SGSPPSVGDFLNFLSAIFFGIHMLRTERIS 283 (328)
Q Consensus 254 ~g~~~~~G~ll~LlaAl~~A~~~I~~rkl~ 283 (328)
++.+...+.++.+++.++|....+...-+.
T Consensus 122 ~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 122 SPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567888999999999988888766544
No 113
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.85 E-value=3.9e+02 Score=26.89 Aligned_cols=75 Identities=9% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHhhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH-----HHhccC---Chh-hH-HHHH-HHHHHHHHHHHHHHHHHh
Q 020256 136 VYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPF-----VFWARD---DVK-TR-NAGI-ELGLWVSLGYFVEALGLL 204 (328)
Q Consensus 136 lWG~s~i~~K~~~~~~~P~~l~~~R~liA~llLl~~-----~~~~~~---~~~-~~-~~~l-l~G~l~~~~~~l~~~aL~ 204 (328)
.|..+.-++|.+.+++.-+++--.-++++-++...+ +.+.+. +|. ++ .+.+ ++| ..+.+.|.+
T Consensus 200 gWs~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~------lvl~Yfsvq 273 (452)
T KOG3817|consen 200 GWSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIG------LVLAYFSVQ 273 (452)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHH------HHHHHHhcc
Confidence 378888899998888888887777777766554433 233322 121 11 1211 222 234456788
Q ss_pred hcchHHHHHHHH
Q 020256 205 TSDAGRASFISL 216 (328)
Q Consensus 205 ~tsa~~aavI~~ 216 (328)
+..++.|++|..
T Consensus 274 ~p~~a~A~iI~~ 285 (452)
T KOG3817|consen 274 HPSAAIAAIIMV 285 (452)
T ss_pred cHHHHHHHHHHH
Confidence 888888776654
No 114
>PRK11715 inner membrane protein; Provisional
Probab=23.89 E-value=7.9e+02 Score=25.13 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHH-HHHHH-HHhcCcCcHHHHHHHHHHHHhhhhh
Q 020256 181 TRNAGIELGLWVSLGYFVEALGLL-TSDAGRASFISLFTVIV-VPLFD-GMLGAIIPAHTWFGVLISALGVGML 251 (328)
Q Consensus 181 ~~~~~ll~G~l~~~~~~l~~~aL~-~tsa~~aavI~~~~Pif-v~lla-~ll~eri~~~~~igl~lg~iGv~ll 251 (328)
+....+++|+.+...|.+ .+++. |.+=..|=++.+..++. +.+.. .+++.+....-..+++.++=|++.+
T Consensus 330 HpiQYlLVGlAl~lFYLL-LLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~ 402 (436)
T PRK11715 330 HPVQYLLVGLALVLFYLL-LLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYG 402 (436)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 445666777765544432 23332 23322222222222211 11111 2345554445555555566665543
No 115
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=20.40 E-value=6.2e+02 Score=22.61 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=53.1
Q ss_pred hcC-cCcHHHHHHHHH-------HHHhhhhhhcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCChHHHHH
Q 020256 229 LGA-IIPAHTWFGVLI-------SALGVGMLECSG-SPPSVGDFLNFLSAIFFGIHMLRTERISRSTK---KENFLPLLG 296 (328)
Q Consensus 229 l~e-ri~~~~~igl~l-------g~iGv~ll~~~g-~~~~~G~ll~LlaAl~~A~~~I~~rkl~~~~~---~~~~l~l~~ 296 (328)
+++ .+...+.+|+.+ ++.|+.++.... .++......++.++++|++..++.....++.+ -+.+..=..
T Consensus 92 v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ 171 (193)
T COG4657 92 VRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAA 171 (193)
T ss_pred HHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 444 445788888876 566887775543 34567788899999999998887766555432 122333344
Q ss_pred HHHHHHHHHHHHH
Q 020256 297 YEVAYLSEKELFS 309 (328)
Q Consensus 297 ~q~l~aai~ll~~ 309 (328)
+.++.+++.++.+
T Consensus 172 ialitagLmSlaF 184 (193)
T COG4657 172 IALITAGLMSLAF 184 (193)
T ss_pred hHHHHHHHHHHHH
Confidence 5667777777654
No 116
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.02 E-value=1.3e+02 Score=19.97 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020256 262 DFLNFLSAIFFGIHMLR 278 (328)
Q Consensus 262 ~ll~LlaAl~~A~~~I~ 278 (328)
.++.++.|.+||+|+|.
T Consensus 8 Vl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 8 IAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 46678999999999975
Done!