Query 020256
Match_columns 328
No_of_seqs 282 out of 1216
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.0 9.3E-05 3.2E-09 59.5 12.4 63 192-254 40-104 (110)
2 2i68_A Protein EMRE; transmemb 97.8 5.3E-05 1.8E-09 63.6 7.9 63 192-254 40-104 (137)
3 4dve_A Biotin transporter BIOY 18.2 4.6E+02 0.016 22.5 8.7 56 217-272 50-112 (198)
4 3ioz_B T-cell surface glycopro 8.4 94 0.0032 20.6 0.4 21 66-86 14-34 (45)
5 3kxt_A Chromatin protein CREN7 8.0 1.8E+02 0.0062 20.0 1.7 26 60-85 3-31 (56)
6 1zla_K Latent nuclear antigen; 6.1 1.6E+02 0.0055 16.7 0.6 11 79-89 2-12 (26)
7 1jmt_B Splicing factor U2AF 65 6.0 1.8E+02 0.0063 17.3 0.9 14 71-84 3-16 (28)
8 2yvc_D Neprilysin; protein-pep 6.0 1.4E+02 0.0046 17.1 0.2 8 71-78 18-25 (26)
9 1ew4_A CYAY protein; friedreic 5.8 2.1E+02 0.0071 22.1 1.3 25 59-83 39-68 (106)
10 2gfp_A EMRD, multidrug resista 5.7 1.3E+03 0.045 19.7 11.0 45 206-250 32-81 (375)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.01 E-value=9.3e-05 Score=59.55 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI-~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
....+.++..++++.+.+.+.-+ .++.|+++.+++++ +||+++..+++|+++.++|++++...
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45567888889999999999777 79999999999975 79999999999999999999987653
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.81 E-value=5.3e-05 Score=63.56 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHhhhhhhcC
Q 020256 192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (328)
Q Consensus 192 ~~~~~~l~~~aL~~tsa~~aavI-~~~~Pifv~lla~l-l~eri~~~~~igl~lg~iGv~ll~~~ 254 (328)
....|+++..++++.+++.+..+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45678889999999999999877 79999999999974 79999999999999999999988553
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=18.24 E-value=4.6e+02 Score=22.46 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHhhhhhhcC-CC-----CCcHHHHHHHHHHHHH
Q 020256 217 FTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLECS-GS-----PPSVGDFLNFLSAIFF 272 (328)
Q Consensus 217 ~~Pifv~lla~ll~eri~-~~~~igl~lg~iGv~ll~~~-g~-----~~~~G~ll~LlaAl~~ 272 (328)
++.+.+.+.+.+++.|.. ....+-+++|.+|+=+..+. ++ +..-|.++++.-+...
T Consensus 50 lQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v 112 (198)
T 4dve_A 50 LQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFL 112 (198)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHH
Confidence 456666777778887776 46677788899998665544 21 2357888775554433
No 4
>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membran myristate, viral immunoevasion, virulence; 3.70A {Homo sapiens}
Probab=8.38 E-value=94 Score=20.61 Aligned_cols=21 Identities=10% Similarity=-0.094 Sum_probs=18.0
Q ss_pred cccccCCccccccCCCCchhh
Q 020256 66 LTHIIKNKCTWVIKAKGNDEA 86 (328)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~ 86 (328)
|.++|.+.|.|.+..+|.||-
T Consensus 14 p~~~q~~n~~YneLn~grree 34 (45)
T 3ioz_B 14 PAYQQGQNQLYNELNLGRREE 34 (45)
T ss_pred cccccccchHHHHhCcCchhh
Confidence 677888889999999998883
No 5
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=7.98 E-value=1.8e+02 Score=20.04 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=20.3
Q ss_pred ceeeccccccc---CCccccccCCCCchh
Q 020256 60 TLHFTNLTHII---KNKCTWVIKAKGNDE 85 (328)
Q Consensus 60 ~~~~~~~~~~~---~~~~~~~~~~~~~~~ 85 (328)
.|.|..|++.. .|..-|+..|+|...
T Consensus 3 ~vkvk~p~G~e~~L~P~KvWvL~P~GrkG 31 (56)
T 3kxt_A 3 PVKVKTPAGKEAELVPEKVWALAPKGRKG 31 (56)
T ss_dssp CEEEECTTSCEEEECCSEEEEECCTTSCC
T ss_pred ceEeeCCCCCEEEEeeeEEEEEcCCCCCc
Confidence 46667777654 899999999998765
No 6
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=6.11 E-value=1.6e+02 Score=16.69 Aligned_cols=11 Identities=9% Similarity=-0.018 Sum_probs=7.3
Q ss_pred CCCCchhhhcc
Q 020256 79 KAKGNDEAIAH 89 (328)
Q Consensus 79 ~~~~~~~~~~~ 89 (328)
.|||||-+...
T Consensus 2 appgmrlrsgr 12 (26)
T 1zla_K 2 APPGMRLRSGR 12 (26)
T ss_pred CCCcceeecCc
Confidence 37888876544
No 7
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=6.04 E-value=1.8e+02 Score=17.26 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=8.8
Q ss_pred CCccccccCCCCch
Q 020256 71 KNKCTWVIKAKGND 84 (328)
Q Consensus 71 ~~~~~~~~~~~~~~ 84 (328)
+++..|..+|||=-
T Consensus 3 ~p~~~WDvpP~GyE 16 (28)
T 1jmt_B 3 KVRKYWDVPPPGFE 16 (28)
T ss_dssp ---CCBTCCCTTCT
T ss_pred CcccccCCCCCCcc
Confidence 34557999999864
No 8
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=6.01 E-value=1.4e+02 Score=17.15 Aligned_cols=8 Identities=25% Similarity=0.062 Sum_probs=5.7
Q ss_pred CCcccccc
Q 020256 71 KNKCTWVI 78 (328)
Q Consensus 71 ~~~~~~~~ 78 (328)
|.||||+.
T Consensus 18 kkk~rws~ 25 (26)
T 2yvc_D 18 KKKQRXXX 25 (26)
T ss_pred chhhcccc
Confidence 55699974
No 9
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=5.75 E-value=2.1e+02 Score=22.11 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.6
Q ss_pred Cceeeccccccc-----CCccccccCCCCc
Q 020256 59 KTLHFTNLTHII-----KNKCTWVIKAKGN 83 (328)
Q Consensus 59 ~~~~~~~~~~~~-----~~~~~~~~~~~~~ 83 (328)
=|+.|.+-.+++ |+||=|-+-|-|-
T Consensus 39 Lti~f~~~~~~VINkQ~P~~QIWlaSp~sG 68 (106)
T 1ew4_A 39 LTITFENGSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp EEEECTTSCEEEEEEETTTTEEEEECSSCE
T ss_pred EEEEECCCCEEEEeCCchhhhheEecCCCc
Confidence 466676666544 9999998877653
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=5.67 E-value=1.3e+03 Score=19.73 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---hcCcCcHHH--HHHHHHHHHhhhh
Q 020256 206 SDAGRASFISLFTVIVVPLFDGM---LGAIIPAHT--WFGVLISALGVGM 250 (328)
Q Consensus 206 tsa~~aavI~~~~Pifv~lla~l---l~eri~~~~--~igl~lg~iGv~l 250 (328)
.+....+.+.....+...+...+ +-+|.++|+ .++.++..+|..+
T Consensus 32 ~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 32 VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 35555566655555444444322 345555433 3444444444443
Done!