Query 020256
Match_columns 328
No_of_seqs 282 out of 1216
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 14:08:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skza1 g.3.15.1 (A:7-58) Fact 18.4 6.2 0.00045 24.5 -1.3 21 31-51 13-36 (52)
2 d1t2ya_ g.46.1.1 (A:) Metallot 13.0 26 0.0019 18.7 0.5 10 37-46 2-11 (26)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 11.8 1E+02 0.0073 16.5 2.7 17 260-276 3-19 (27)
4 d1xaua_ b.1.1.4 (A:) B and T l 9.7 22 0.0016 25.4 -0.7 21 44-64 84-104 (104)
5 d1dfna_ g.9.1.1 (A:) Defensin 6.3 47 0.0034 18.2 -0.2 9 37-45 1-9 (30)
6 d1hh2p4 d.202.1.1 (P:1-126) Tr 5.0 32 0.0023 25.6 -2.1 27 48-74 100-126 (126)
7 d1ew4a_ d.82.2.1 (A:) CyaY {Es 4.6 1.3E+02 0.0094 21.4 1.3 24 60-83 40-68 (106)
8 g3bzy.1 d.367.1.1 (A:246-262,B 4.4 1.1E+02 0.0082 21.6 0.8 13 58-70 10-22 (100)
9 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 5.3E+02 0.039 19.6 5.3 32 205-236 39-73 (417)
10 g2vt1.1 d.367.1.1 (A:237-257,B 3.9 1.3E+02 0.0096 21.3 0.8 10 60-69 16-25 (102)
No 1
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=18.39 E-value=6.2 Score=24.51 Aligned_cols=21 Identities=43% Similarity=0.849 Sum_probs=14.8
Q ss_pred eeEEeccccccchhh---hhhhhh
Q 020256 31 WKIVTTDCTCSISSC---CFNFFS 51 (328)
Q Consensus 31 ~~~~~~~~~~~~~~~---~~~~~~ 51 (328)
-.|+|..||||--.| |-.+|.
T Consensus 13 cniitdrctcsgvrcrvhcphgfq 36 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHGFQ 36 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTCEE
T ss_pred ceeeccceeeccceEEEECCCccc
Confidence 467889999987654 555554
No 2
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=13.00 E-value=26 Score=18.66 Aligned_cols=10 Identities=60% Similarity=1.305 Sum_probs=6.9
Q ss_pred cccccchhhh
Q 020256 37 DCTCSISSCC 46 (328)
Q Consensus 37 ~~~~~~~~~~ 46 (328)
||.||-.|.|
T Consensus 2 dcgcsgassc 11 (26)
T d1t2ya_ 2 DCGCSGASSC 11 (26)
T ss_dssp CCSCSSTTTC
T ss_pred CcccCccccc
Confidence 7888766554
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.82 E-value=1e+02 Score=16.46 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020256 260 VGDFLNFLSAIFFGIHM 276 (328)
Q Consensus 260 ~G~ll~LlaAl~~A~~~ 276 (328)
+|.+..-+++++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57778888889999885
No 4
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.75 E-value=22 Score=25.44 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=18.3
Q ss_pred hhhhhhhhhhhcccCCceeec
Q 020256 44 SCCFNFFSNVTNQHSKTLHFT 64 (328)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~ 64 (328)
.|-+|+=|++-+.||-|++|+
T Consensus 84 rCSanf~s~vieSHSvti~Vt 104 (104)
T d1xaua_ 84 SCSTNFNSQVINSHSVTIHVR 104 (104)
T ss_dssp EEEEEETTEEEECCCEEEEEC
T ss_pred EEecCCChhheecceEEEEeC
Confidence 355899999999999999986
No 5
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.31 E-value=47 Score=18.19 Aligned_cols=9 Identities=56% Similarity=1.575 Sum_probs=6.0
Q ss_pred cccccchhh
Q 020256 37 DCTCSISSC 45 (328)
Q Consensus 37 ~~~~~~~~~ 45 (328)
||-|.|..|
T Consensus 1 dcycripac 9 (30)
T d1dfna_ 1 DCYCRIPAC 9 (30)
T ss_dssp CCEEESSCC
T ss_pred Cceeecchh
Confidence 677777654
No 6
>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.96 E-value=32 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.5
Q ss_pred hhhhhhhcccCCceeecccccccCCcc
Q 020256 48 NFFSNVTNQHSKTLHFTNLTHIIKNKC 74 (328)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (328)
..|+|.++|.++.+-....|...+.||
T Consensus 100 ~~fgRiaaq~akQ~i~Qkire~Ererq 126 (126)
T d1hh2p4 100 KNFGRIAAQTAKQVLIQRIRELEKEKQ 126 (126)
T ss_dssp CCSSSCSGGGHHHHHHHHHHHHTTCCS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHccC
Confidence 359999999999887776666666554
No 7
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=1.3e+02 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=15.9
Q ss_pred ceeecccccc-----cCCccccccCCCCc
Q 020256 60 TLHFTNLTHI-----IKNKCTWVIKAKGN 83 (328)
Q Consensus 60 ~~~~~~~~~~-----~~~~~~~~~~~~~~ 83 (328)
|++|.+-.++ -|+||=|-+-|-|-
T Consensus 40 ti~~~~~~~~VINkQ~p~~QIWlaSpsgg 68 (106)
T d1ew4a_ 40 TITFENGSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp EEECTTSCEEEEEEETTTTEEEEECSSCE
T ss_pred EEEECCCCEEEEeCCCccceeeEECCCCC
Confidence 5556554443 38999999887543
No 8
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=4.40 E-value=1.1e+02 Score=21.63 Aligned_cols=13 Identities=38% Similarity=0.404 Sum_probs=10.5
Q ss_pred CCceeeccccccc
Q 020256 58 SKTLHFTNLTHII 70 (328)
Q Consensus 58 ~~~~~~~~~~~~~ 70 (328)
..++-++||||+-
T Consensus 10 ~a~vvi~NPTh~A 22 (100)
T g3bzy.1 10 KSTVIVKNPTHIA 22 (100)
T ss_dssp HCSEEEECCCCEE
T ss_pred CCCEEEECCCEEE
Confidence 3578899999975
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.19 E-value=5.3e+02 Score=19.63 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=18.3
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHH---hcCcCcHH
Q 020256 205 TSDAGRASFISLFTVIVVPLFDGM---LGAIIPAH 236 (328)
Q Consensus 205 ~tsa~~aavI~~~~Pifv~lla~l---l~eri~~~ 236 (328)
..+.++.+++.+...+...+...+ +-+|.++|
T Consensus 39 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 39 HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 357777777777666555554432 33455443
No 10
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=3.88 E-value=1.3e+02 Score=21.29 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=0.0
Q ss_pred ceeecccccc
Q 020256 60 TLHFTNLTHI 69 (328)
Q Consensus 60 ~~~~~~~~~~ 69 (328)
|+-++||||+
T Consensus 16 ~vvv~NPTh~ 25 (102)
T g2vt1.1 16 KLVVMNPTHI 25 (102)
T ss_dssp SEEEECCCSE
T ss_pred CEEEECCCeE
Done!