Query 020257
Match_columns 328
No_of_seqs 194 out of 1475
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:17:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 4.9E-59 1.1E-63 452.4 36.6 299 2-317 120-427 (443)
2 PLN03003 Probable polygalactur 100.0 2.5E-58 5.3E-63 444.7 37.1 280 19-317 104-393 (456)
3 PLN02188 polygalacturonase/gly 100.0 1.2E-57 2.6E-62 438.0 35.8 293 3-313 102-404 (404)
4 PLN02218 polygalacturonase ADP 100.0 1.7E-57 3.6E-62 439.8 34.9 276 19-313 147-431 (431)
5 PLN03010 polygalacturonase 100.0 2.6E-56 5.7E-61 428.0 35.5 283 3-315 117-405 (409)
6 PLN02155 polygalacturonase 100.0 3.2E-56 6.9E-61 426.5 35.5 280 20-314 107-393 (394)
7 PF00295 Glyco_hydro_28: Glyco 100.0 3E-54 6.6E-59 407.4 31.4 267 19-303 51-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.4E-32 3E-37 269.4 21.7 206 20-227 190-404 (542)
9 PLN03003 Probable polygalactur 99.9 8.4E-23 1.8E-27 198.0 27.6 213 60-299 104-343 (456)
10 PLN03010 polygalacturonase 99.9 4.1E-22 9E-27 191.8 28.7 243 21-298 95-359 (409)
11 PLN02218 polygalacturonase ADP 99.9 3.3E-22 7.3E-27 194.0 26.7 202 61-288 148-384 (431)
12 PLN02793 Probable polygalactur 99.9 4.9E-22 1.1E-26 193.7 27.0 204 18-260 176-397 (443)
13 PF00295 Glyco_hydro_28: Glyco 99.9 5.8E-22 1.3E-26 187.5 23.3 205 16-259 89-310 (326)
14 PLN02155 polygalacturonase 99.9 3.7E-21 8.1E-26 184.8 27.7 204 18-260 144-366 (394)
15 PLN02188 polygalacturonase/gly 99.9 4.2E-21 9.2E-26 185.1 27.1 205 17-260 153-377 (404)
16 PF03718 Glyco_hydro_49: Glyco 99.7 5E-16 1.1E-20 150.0 24.2 238 19-288 269-555 (582)
17 COG5434 PGU1 Endopygalactoruna 99.7 4.5E-16 9.8E-21 153.4 20.3 225 10-261 157-399 (542)
18 TIGR03805 beta_helix_1 paralle 99.2 1.3E-09 2.9E-14 102.6 17.8 169 21-221 26-203 (314)
19 TIGR03808 RR_plus_rpt_1 twin-a 99.0 3E-08 6.4E-13 95.7 17.0 158 19-198 106-290 (455)
20 PF12541 DUF3737: Protein of u 98.9 2.2E-08 4.7E-13 89.7 13.5 130 58-225 89-229 (277)
21 TIGR03805 beta_helix_1 paralle 98.8 1.8E-06 3.9E-11 81.4 21.0 151 62-228 79-250 (314)
22 PF13229 Beta_helix: Right han 98.7 1.8E-07 3.9E-12 77.9 11.2 139 63-227 3-144 (158)
23 PF12541 DUF3737: Protein of u 98.7 2.3E-07 5.1E-12 83.1 12.3 138 24-198 94-231 (277)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.6 2E-06 4.3E-11 83.2 16.3 164 21-227 82-290 (455)
25 PF03718 Glyco_hydro_49: Glyco 98.6 1.3E-06 2.7E-11 85.6 14.9 196 66-287 275-515 (582)
26 smart00656 Amb_all Amb_all dom 98.4 3.4E-06 7.4E-11 73.9 11.5 97 85-192 33-144 (190)
27 PF13229 Beta_helix: Right han 98.4 1.1E-05 2.3E-10 67.2 13.1 141 22-200 3-146 (158)
28 PF05048 NosD: Periplasmic cop 98.3 3.8E-05 8.3E-10 69.2 15.8 112 63-197 38-150 (236)
29 PF05048 NosD: Periplasmic cop 98.3 4.3E-05 9.2E-10 68.9 15.8 135 62-226 15-150 (236)
30 COG3866 PelB Pectate lyase [Ca 98.3 1.7E-05 3.6E-10 72.6 12.5 120 62-192 94-229 (345)
31 COG3866 PelB Pectate lyase [Ca 98.2 0.00014 3E-09 66.7 18.3 141 21-191 94-250 (345)
32 PF00544 Pec_lyase_C: Pectate 98.2 2.4E-05 5.3E-10 69.0 11.6 97 84-192 37-158 (200)
33 smart00656 Amb_all Amb_all dom 98.0 0.00032 6.9E-09 61.4 15.5 126 63-198 34-173 (190)
34 PF12708 Pectate_lyase_3: Pect 97.9 0.00074 1.6E-08 59.7 16.4 122 73-225 96-224 (225)
35 PF12708 Pectate_lyase_3: Pect 97.7 0.001 2.2E-08 58.8 12.9 111 60-196 112-224 (225)
36 PF00544 Pec_lyase_C: Pectate 97.2 0.0021 4.6E-08 56.7 9.3 124 66-199 43-188 (200)
37 COG3420 NosD Nitrous oxidase a 96.7 0.23 5E-06 46.8 18.1 77 62-139 71-179 (408)
38 PLN02480 Probable pectinestera 95.1 1.9 4E-05 41.3 16.9 14 68-81 131-144 (343)
39 PF07602 DUF1565: Protein of u 93.1 3 6.6E-05 37.9 13.2 75 90-172 95-170 (246)
40 COG3420 NosD Nitrous oxidase a 92.9 1.6 3.4E-05 41.3 11.2 123 21-172 122-245 (408)
41 PF01696 Adeno_E1B_55K: Adenov 91.6 4.7 0.0001 39.0 13.1 100 68-187 120-220 (386)
42 PRK10123 wcaM putative colanic 91.4 3.5 7.6E-05 38.2 11.4 62 68-130 121-188 (464)
43 PLN02773 pectinesterase 90.7 7.3 0.00016 36.9 13.3 62 66-134 99-166 (317)
44 PLN02773 pectinesterase 90.2 8.1 0.00018 36.6 13.1 114 87-222 97-213 (317)
45 PF14592 Chondroitinas_B: Chon 89.5 9.5 0.00021 37.5 13.4 132 63-200 62-222 (425)
46 PLN02708 Probable pectinestera 89.3 28 0.0006 35.6 17.4 37 67-103 328-369 (553)
47 PRK10123 wcaM putative colanic 89.2 2.5 5.3E-05 39.2 8.5 65 152-221 300-374 (464)
48 PF03211 Pectate_lyase: Pectat 88.5 18 0.00038 32.3 14.9 61 69-135 61-122 (215)
49 PLN02480 Probable pectinestera 86.6 14 0.00031 35.3 12.4 135 90-258 130-275 (343)
50 PF07602 DUF1565: Protein of u 83.7 11 0.00024 34.4 9.7 95 117-228 95-195 (246)
51 PF03211 Pectate_lyase: Pectat 83.7 32 0.00069 30.7 13.0 129 92-254 61-194 (215)
52 PLN02671 pectinesterase 83.1 46 0.00099 32.1 16.6 16 66-81 151-166 (359)
53 PLN02682 pectinesterase family 82.7 48 0.001 32.1 17.4 16 66-81 160-175 (369)
54 PLN02745 Putative pectinestera 82.3 65 0.0014 33.3 16.0 78 67-164 370-452 (596)
55 TIGR03804 para_beta_helix para 81.5 2.1 4.6E-05 27.6 3.2 37 87-128 3-39 (44)
56 PF01696 Adeno_E1B_55K: Adenov 81.0 7.2 0.00016 37.7 7.8 88 88-196 117-204 (386)
57 PLN02634 probable pectinestera 80.5 57 0.0012 31.5 16.6 14 68-81 148-161 (359)
58 TIGR03804 para_beta_helix para 80.2 2.8 6E-05 27.0 3.4 40 112-163 1-40 (44)
59 PLN02416 probable pectinestera 79.3 60 0.0013 33.1 14.2 65 61-133 310-380 (541)
60 PF01095 Pectinesterase: Pecti 79.3 17 0.00036 34.2 9.6 105 67-192 85-202 (298)
61 PLN02916 pectinesterase family 77.9 83 0.0018 31.8 16.0 38 67-104 275-317 (502)
62 PLN02682 pectinesterase family 77.9 54 0.0012 31.8 12.7 138 88-259 159-304 (369)
63 PRK10531 acyl-CoA thioesterase 77.8 66 0.0014 31.8 13.4 124 90-221 204-336 (422)
64 PLN02708 Probable pectinestera 77.4 53 0.0011 33.7 13.2 114 88-221 326-449 (553)
65 PLN02170 probable pectinestera 77.3 88 0.0019 31.8 15.8 62 66-133 310-376 (529)
66 PLN02665 pectinesterase family 76.0 72 0.0016 30.9 13.0 113 88-221 150-272 (366)
67 PLN02170 probable pectinestera 75.1 71 0.0015 32.5 13.2 116 87-222 308-428 (529)
68 PLN02634 probable pectinestera 74.9 63 0.0014 31.2 12.3 111 90-221 147-266 (359)
69 PF01095 Pectinesterase: Pecti 73.7 39 0.00083 31.7 10.4 111 90-221 85-202 (298)
70 PLN02506 putative pectinestera 73.4 1.1E+02 0.0024 31.2 16.4 61 66-133 316-382 (537)
71 PLN02217 probable pectinestera 72.6 1.3E+02 0.0028 31.6 15.3 142 59-221 328-486 (670)
72 PLN02745 Putative pectinestera 72.2 88 0.0019 32.4 13.3 112 89-221 369-487 (596)
73 PRK10531 acyl-CoA thioesterase 72.0 96 0.0021 30.6 12.9 145 64-223 201-378 (422)
74 PLN02176 putative pectinestera 72.0 95 0.0021 29.7 14.1 15 67-81 120-134 (340)
75 PLN02698 Probable pectinestera 71.8 1.1E+02 0.0025 30.8 13.8 47 91-137 269-316 (497)
76 PLN02497 probable pectinestera 71.4 97 0.0021 29.6 13.6 18 118-135 149-166 (331)
77 PLN02665 pectinesterase family 70.8 1.1E+02 0.0023 29.8 16.7 132 64-221 149-298 (366)
78 PLN02916 pectinesterase family 70.0 1.2E+02 0.0026 30.6 13.4 113 89-221 274-392 (502)
79 PLN02304 probable pectinestera 69.7 1.1E+02 0.0025 29.7 17.2 14 68-81 161-174 (379)
80 PLN02468 putative pectinestera 68.8 1.5E+02 0.0032 30.6 15.5 61 67-133 343-408 (565)
81 PLN02933 Probable pectinestera 68.7 1E+02 0.0023 31.3 12.8 112 90-221 303-420 (530)
82 PLN02995 Probable pectinestera 67.6 1.5E+02 0.0033 30.3 15.4 61 67-133 310-375 (539)
83 PLN02933 Probable pectinestera 66.2 1.6E+02 0.0034 30.1 15.9 142 59-221 296-454 (530)
84 PLN02484 probable pectinestera 66.0 1E+02 0.0022 31.8 12.3 112 90-221 358-475 (587)
85 PLN02176 putative pectinestera 65.9 1.2E+02 0.0027 29.0 12.1 111 90-221 120-246 (340)
86 PLN02432 putative pectinestera 65.9 1.2E+02 0.0026 28.5 12.9 109 91-220 93-204 (293)
87 PLN02432 putative pectinestera 65.0 1.2E+02 0.0027 28.3 13.7 130 66-221 91-230 (293)
88 PLN02301 pectinesterase/pectin 63.9 1.5E+02 0.0031 30.5 12.8 112 90-221 321-438 (548)
89 PLN02995 Probable pectinestera 63.3 1E+02 0.0022 31.5 11.6 112 89-221 309-427 (539)
90 PLN02698 Probable pectinestera 62.9 1.4E+02 0.003 30.2 12.4 135 67-221 268-419 (497)
91 PLN02416 probable pectinestera 62.7 52 0.0011 33.6 9.4 113 88-221 313-432 (541)
92 PLN02313 Pectinesterase/pectin 62.4 2E+02 0.0043 29.8 14.9 14 68-81 361-374 (587)
93 PF09251 PhageP22-tail: Salmon 61.8 71 0.0015 31.5 9.5 64 152-217 263-346 (549)
94 PLN02217 probable pectinestera 61.0 1.3E+02 0.0027 31.7 11.9 111 90-221 335-452 (670)
95 PLN02506 putative pectinestera 60.0 78 0.0017 32.3 10.1 114 88-221 315-434 (537)
96 PLN02201 probable pectinestera 59.0 2.1E+02 0.0046 29.1 13.8 113 89-221 290-408 (520)
97 PLN02671 pectinesterase 59.0 1.8E+02 0.0038 28.2 13.1 113 88-221 150-270 (359)
98 PLN02301 pectinesterase/pectin 58.7 2.2E+02 0.0048 29.2 15.9 137 65-221 319-472 (548)
99 PLN02197 pectinesterase 58.3 1E+02 0.0022 31.9 10.6 112 89-221 361-480 (588)
100 PLN02497 probable pectinestera 58.0 1.8E+02 0.0038 27.8 12.0 79 66-164 112-202 (331)
101 PLN02713 Probable pectinestera 57.6 1E+02 0.0022 31.7 10.6 112 90-221 338-455 (566)
102 PLN02488 probable pectinestera 57.6 2.2E+02 0.0048 28.9 13.8 113 90-222 282-400 (509)
103 PLN02197 pectinesterase 57.5 1.8E+02 0.004 30.0 12.3 135 66-221 361-514 (588)
104 PF08480 Disaggr_assoc: Disagg 55.0 93 0.002 27.1 8.2 14 209-222 64-77 (198)
105 PLN02201 probable pectinestera 54.1 2.6E+02 0.0055 28.5 17.7 140 61-221 286-442 (520)
106 PLN02314 pectinesterase 53.7 1.1E+02 0.0023 31.8 9.9 113 89-222 362-481 (586)
107 PLN03043 Probable pectinestera 52.7 1.3E+02 0.0028 30.8 10.3 114 88-221 309-428 (538)
108 PLN02313 Pectinesterase/pectin 51.9 1.1E+02 0.0024 31.6 9.8 115 88-222 358-478 (587)
109 PLN02990 Probable pectinestera 51.9 1.1E+02 0.0025 31.4 9.8 111 90-221 345-462 (572)
110 PLN02304 probable pectinestera 51.6 2.4E+02 0.0052 27.5 13.1 113 89-221 159-287 (379)
111 PLN03043 Probable pectinestera 51.5 2.9E+02 0.0062 28.3 16.6 140 61-221 306-462 (538)
112 PLN02468 putative pectinestera 51.4 1.3E+02 0.0028 31.0 10.1 114 89-222 342-461 (565)
113 PLN02484 probable pectinestera 49.8 3.2E+02 0.0068 28.3 16.2 137 65-221 356-509 (587)
114 smart00710 PbH1 Parallel beta- 49.7 24 0.00053 18.8 2.8 11 120-130 3-13 (26)
115 PLN02488 probable pectinestera 47.9 3.2E+02 0.0068 27.8 16.1 136 66-221 281-433 (509)
116 PLN02713 Probable pectinestera 47.0 3.4E+02 0.0074 27.9 17.3 142 59-221 331-489 (566)
117 PF08480 Disaggr_assoc: Disagg 41.5 2.4E+02 0.0052 24.6 10.1 13 118-130 33-45 (198)
118 PF14592 Chondroitinas_B: Chon 40.8 3.6E+02 0.0079 26.7 10.9 57 72-130 226-282 (425)
119 PLN02990 Probable pectinestera 38.8 4.6E+02 0.01 27.1 16.3 140 61-221 340-496 (572)
120 PLN02314 pectinesterase 32.2 5.9E+02 0.013 26.4 17.4 141 59-221 356-509 (586)
121 PF09251 PhageP22-tail: Salmon 30.9 1.3E+02 0.0028 29.8 5.9 89 118-214 263-365 (549)
122 PF08603 CAP_C: Adenylate cycl 28.0 2.7E+02 0.0059 23.5 6.9 14 20-33 33-46 (159)
123 COG4677 PemB Pectin methyleste 25.8 1.9E+02 0.0041 27.6 5.9 67 118-192 220-286 (405)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=4.9e-59 Score=452.37 Aligned_cols=299 Identities=27% Similarity=0.372 Sum_probs=260.1
Q ss_pred ceeeeeeEEeecccCCceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcC---CCCCCCCeEEEEEeecceEEEeEEE
Q 020257 2 TFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQR---TLPFTRPNLIEFMNSRSIIISNVIF 78 (328)
Q Consensus 2 ~~~~~~~~w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~---~~~~~rp~~i~~~~~~nv~i~gi~i 78 (328)
.|+.+..+|++.. +++||++.+++||+|+|. |+|||+|+.||+..... .....||++|.|.+|+|++|+||++
T Consensus 120 ~~~~d~~~w~~~~---~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl 195 (443)
T PLN02793 120 IAPKDPDVWKGLN---PRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNV 195 (443)
T ss_pred EccCChHHccCCC---CceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEE
Confidence 3566777887643 357999999999999999 99999999999753211 1124589999999999999999999
Q ss_pred eCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEE
Q 020257 79 QNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIR 158 (328)
Q Consensus 79 ~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~ 158 (328)
+|||.|++++..|+||+|++++|.++.+.+|+||||+.+|+||+|+||+|+++||||++|++ ++||+|+
T Consensus 196 ~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------s~nI~I~ 264 (443)
T PLN02793 196 IDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIR 264 (443)
T ss_pred EcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------cCCEEEE
Confidence 99999999999999999999999998888999999999999999999999999999999984 8999999
Q ss_pred eEEEeCCCceeEEeecc----cCCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCC
Q 020257 159 RVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDH 234 (328)
Q Consensus 159 nc~~~~~~~gi~igS~~----~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~ 234 (328)
||+|.. +|||+|||++ .+.|+||+|+||+|.++.+|++||++.+++|.|+||+|+||+|+++.+||.|++.|+..
T Consensus 265 n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~ 343 (443)
T PLN02793 265 NIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDS 343 (443)
T ss_pred EeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCC
Confidence 999965 7999999974 46899999999999999999999999988899999999999999999999999999642
Q ss_pred CCCCCCCCCCCcEEEEEEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCcC-ccccCCC
Q 020257 235 PDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAY-QVKPWPC 312 (328)
Q Consensus 235 ~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~~-~~~p~~~ 312 (328)
......+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++..+++ ...+.|.|++|... .+.|.||
T Consensus 344 ~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C 422 (443)
T PLN02793 344 RKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPC 422 (443)
T ss_pred CCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCcc
Confidence 211111223468999999999999753 57899999999999999999999988766 45789999999985 5788889
Q ss_pred CCCCC
Q 020257 313 SELSS 317 (328)
Q Consensus 313 ~~~~~ 317 (328)
++...
T Consensus 423 ~~~~~ 427 (443)
T PLN02793 423 FSDST 427 (443)
T ss_pred ccCCC
Confidence 86543
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.5e-58 Score=444.65 Aligned_cols=280 Identities=30% Similarity=0.457 Sum_probs=249.2
Q ss_pred eeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEe
Q 020257 19 LSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRY 98 (328)
Q Consensus 19 ~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~ 98 (328)
.+||+|.+++|++|+|. |+|||+|+.||+.. ..||++|+|.+|+|+.|+||+++|||.|++++..|++|+|++
T Consensus 104 ~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 104 DQWILFTDIEGLVIEGD-GEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISS 176 (456)
T ss_pred cceEEEEcccceEEecc-ceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEE
Confidence 46999999999999999 99999999999742 469999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeeccc--
Q 020257 99 VTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS-- 176 (328)
Q Consensus 99 v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~-- 176 (328)
++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++ ++||+|+||+|.. +|||+|||+++
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~~-GHGISIGSlg~~g 244 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGP-GHGISIGSLGKDG 244 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEEC-CCCeEEeeccCCC
Confidence 999998889999999999999999999999999999999995 7999999999965 79999999974
Q ss_pred --CCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCC-CCCC-CCCCCCcEEEEEE
Q 020257 177 --GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHP-DDKF-NPNALPVVNGITI 252 (328)
Q Consensus 177 --g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt~ 252 (328)
+.|+||+|+||++.++.+|+|||++.|++|.|+||+|+||+|+++.+||.|++.|+..+ ...+ .+...+.|+||+|
T Consensus 245 ~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f 324 (456)
T PLN03003 245 ETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVF 324 (456)
T ss_pred CcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEE
Confidence 45999999999999999999999999888999999999999999999999999997432 1111 1223469999999
Q ss_pred EEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecC--CCCCCCeEeeecccCcCccccC-CCCCCCC
Q 020257 253 KDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVA--GPTSPPLKCSDVSGSAYQVKPW-PCSELSS 317 (328)
Q Consensus 253 ~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~--~~~~~~~~c~~v~~~~~~~~p~-~~~~~~~ 317 (328)
+||+++... .++.+.|.++.||+||+|+||.++... .+..+.+.|.||.|....+.|+ ||++...
T Consensus 325 ~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~ 393 (456)
T PLN03003 325 SNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELST 393 (456)
T ss_pred EeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCC
Confidence 999998664 578899999999999999999999873 2334679999999998766555 7998544
No 3
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.2e-57 Score=437.96 Aligned_cols=293 Identities=27% Similarity=0.373 Sum_probs=252.9
Q ss_pred eeeeeeEEeecccCCceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhc--CCCCCCCCeEEEEEeecceEEEeEEEeC
Q 020257 3 FGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQ--RTLPFTRPNLIEFMNSRSIIISNVIFQN 80 (328)
Q Consensus 3 ~~~~~~~w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~--~~~~~~rp~~i~~~~~~nv~i~gi~i~n 80 (328)
++.+..+|.. ...|+.+..++||+|+|. |+|||+|+.||+.... ......||++|.|.+|+|+.|+||+++|
T Consensus 102 ~s~d~~~y~~-----~~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n 175 (404)
T PLN02188 102 AATDLSRYGS-----GNDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN 175 (404)
T ss_pred cCCCHHHCCC-----ccceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc
Confidence 4455555543 235788888999999998 9999999999974321 1123579999999999999999999999
Q ss_pred CCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeE
Q 020257 81 SPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRV 160 (328)
Q Consensus 81 ~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc 160 (328)
||+|++++..|+||+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++ ++||+|+||
T Consensus 176 Sp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg-----------~~nI~I~n~ 244 (404)
T PLN02188 176 SKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG-----------NSQVTITRI 244 (404)
T ss_pred CCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC-----------CccEEEEEE
Confidence 999999999999999999999998888999999999999999999999999999999985 789999999
Q ss_pred EEeCCCceeEEee----cccCCEEeEEEEceEEeccceeEEEEEecC--CCceEEEEEEEeEEEcccCeeEEEEeeeCCC
Q 020257 161 TGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDH 234 (328)
Q Consensus 161 ~~~~~~~gi~igS----~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g--~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~ 234 (328)
.|.. +|||+||| ++.++|+||+|+||++.++.+|++||++.+ ++|.|+||+|+||+|++++.||.|++.|...
T Consensus 245 ~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~ 323 (404)
T PLN02188 245 RCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPF 323 (404)
T ss_pred EEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCC
Confidence 9954 79999999 556889999999999999999999999975 4589999999999999999999999988643
Q ss_pred CCCCCCCCCCCcEEEEEEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCcC-ccccCCC
Q 020257 235 PDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAY-QVKPWPC 312 (328)
Q Consensus 235 ~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~~-~~~p~~~ 312 (328)
+.+...+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++...+..+..+.|.|+++... .+.|.||
T Consensus 324 ~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C 403 (404)
T PLN02188 324 YSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPC 403 (404)
T ss_pred CCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCC
Confidence 322111122368999999999998763 57889999999999999999999988665556799999999984 7888888
Q ss_pred C
Q 020257 313 S 313 (328)
Q Consensus 313 ~ 313 (328)
+
T Consensus 404 ~ 404 (404)
T PLN02188 404 P 404 (404)
T ss_pred C
Confidence 5
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.7e-57 Score=439.81 Aligned_cols=276 Identities=29% Similarity=0.456 Sum_probs=244.7
Q ss_pred eeeEEEeccEeeEEEeC-CeEEEcCCchhhhhhhcCCC---CCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeE
Q 020257 19 LSDFLISKFEKISFIGE-NGTIDGQGAIWWNMWRQRTL---PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNV 94 (328)
Q Consensus 19 ~~li~~~~~~nv~I~G~-~G~IdG~g~~~w~~~~~~~~---~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv 94 (328)
..||++.+++||+|+|. .|+|||+|+.||+....... ...||++|.|.+|+|++|+||+++|||+|++++..|+||
T Consensus 147 ~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV 226 (431)
T PLN02218 147 SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNV 226 (431)
T ss_pred ccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeE
Confidence 36899999999999994 29999999999975432111 246999999999999999999999999999999999999
Q ss_pred EEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeec
Q 020257 95 VIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSE 174 (328)
Q Consensus 95 ~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~ 174 (328)
+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+||++ ++||+|+||+|.. +|||+|||+
T Consensus 227 ~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~~-GHGisIGS~ 294 (431)
T PLN02218 227 QVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGP-GHGISIGSL 294 (431)
T ss_pred EEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC-----------CceEEEEeEEEEC-CCCEEECcC
Confidence 9999999998888999999999999999999999999999999995 8999999999964 799999999
Q ss_pred cc----CCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEE
Q 020257 175 TS----GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGI 250 (328)
Q Consensus 175 ~~----g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI 250 (328)
+. +.|+||+|+||++.++.+|+|||++++++|.|+||+|+||+|+++++||.|++.|...+.+..++ ..+.|+||
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~-s~v~I~nI 373 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQ-SAVQVKNV 373 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCC-CCeEEEEE
Confidence 73 57999999999999999999999999999999999999999999999999999997543222223 34689999
Q ss_pred EEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCcCccccCCCC
Q 020257 251 TIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCS 313 (328)
Q Consensus 251 t~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~~~~~p~~~~ 313 (328)
+|+||+++.+. .++.|.|.++.||+||+|+||.++.. ...|.||.+....++|++|.
T Consensus 374 ~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p~c~ 431 (431)
T PLN02218 374 VYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSPQCN 431 (431)
T ss_pred EEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCCCCC
Confidence 99999998764 67889999999999999999999852 36799999998777676884
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.6e-56 Score=427.97 Aligned_cols=283 Identities=27% Similarity=0.394 Sum_probs=249.8
Q ss_pred eeeeeeEEeecccCCceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC
Q 020257 3 FGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP 82 (328)
Q Consensus 3 ~~~~~~~w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~ 82 (328)
+..+..+|+... ...||.|.+++||+|+|+ |+|||+|+.||+ +|+|.+|+|++|+||+++|||
T Consensus 117 ~~~d~~~w~~~~---~~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp 179 (409)
T PLN03010 117 APSNIVAWSNPK---SQMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSP 179 (409)
T ss_pred ccCChhhccCCC---CcceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCC
Confidence 455677786543 236899999999999999 999999999994 689999999999999999999
Q ss_pred CcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEE
Q 020257 83 FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 162 (328)
Q Consensus 83 ~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~ 162 (328)
+|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++ +.|+.|+++.|
T Consensus 180 ~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg-----------s~ni~I~~~~C 248 (409)
T PLN03010 180 KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINITQINC 248 (409)
T ss_pred ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------CCcEEEEEEEe
Confidence 9999999999999999999998778999999999999999999999999999999995 67899999888
Q ss_pred eCCCceeEEeecccC----CEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCC
Q 020257 163 SSPFSGIAVGSETSG----GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDK 238 (328)
Q Consensus 163 ~~~~~gi~igS~~~g----~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~ 238 (328)
.. +|||+|||++.+ .|+||+|+||+|.++.+|++||++.+++|.|+||+|+||+|+++++||.|++.|.......
T Consensus 249 ~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~ 327 (409)
T PLN03010 249 GP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLD 327 (409)
T ss_pred EC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCC
Confidence 65 789999999654 4999999999999999999999999889999999999999999999999999997532221
Q ss_pred CCCCCCCcEEEEEEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCc-CccccCCCCCC
Q 020257 239 FNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSA-YQVKPWPCSEL 315 (328)
Q Consensus 239 ~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~-~~~~p~~~~~~ 315 (328)
..+...+.|+||+|+||+++... .++.|.|.+..||+||+|+||+++...+.. +.+.|.|+.+.. ..+.|.+|+|.
T Consensus 328 ~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~-~~~~C~nv~g~~~~~~~~~~C~~~ 405 (409)
T PLN03010 328 ATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEK-PKVECQNVEGESSDTDLMRDCFKN 405 (409)
T ss_pred CCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCc-cceEeeCccccccCCCCCCccccc
Confidence 22233468999999999998654 688999999999999999999999887664 689999999987 45667779973
No 6
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.2e-56 Score=426.46 Aligned_cols=280 Identities=29% Similarity=0.420 Sum_probs=246.0
Q ss_pred eeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeE
Q 020257 20 SDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYV 99 (328)
Q Consensus 20 ~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v 99 (328)
.||++.+++|+.|+| |+|||||+.||...........||++|+|.+|++++|+||+++|||.|++++..|+||+|+++
T Consensus 107 ~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v 184 (394)
T PLN02155 107 YWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNV 184 (394)
T ss_pred eeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEE
Confidence 489999999999999 999999999997543322233578999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecc----
Q 020257 100 TILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET---- 175 (328)
Q Consensus 100 ~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~---- 175 (328)
+|.++.+++|+||||+.+|+||+|+||+|+++||||++|++ ++||+|+||.|.. +|||+|||++
T Consensus 185 ~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~~-GhGisIGS~g~~~~ 252 (394)
T PLN02155 185 KLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFLITKLACGP-GHGVSIGSLAKELN 252 (394)
T ss_pred EEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------CceEEEEEEEEEC-CceEEeccccccCC
Confidence 99998888999999999999999999999999999999985 7999999999975 7999999973
Q ss_pred cCCEEeEEEEceEEeccceeEEEEEecC-CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEEEEEE
Q 020257 176 SGGVENVLAEHINLYNVGVGIHVKTNIG-RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKD 254 (328)
Q Consensus 176 ~g~i~nI~v~n~~~~~~~~gi~I~s~~g-~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~n 254 (328)
.++|+||+|+||+|.++.+|++||++.+ ++|.|+||+|+||+|++++.||.|++.|.........+...+.|+||+|+|
T Consensus 253 ~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~n 332 (394)
T PLN02155 253 EDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKN 332 (394)
T ss_pred CCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEe
Confidence 5789999999999999999999999864 689999999999999999999999999964322111112235899999999
Q ss_pred EEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCcCcc-ccCCCCC
Q 020257 255 VWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQV-KPWPCSE 314 (328)
Q Consensus 255 I~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~~~~-~p~~~~~ 314 (328)
|+++... .++.|.|.++.||+||+|+||+++...+. ++.+.|.|++|....+ .|.||+.
T Consensus 333 i~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 333 IQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-PATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred eEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-ccCcEEeccEeEEcccCCcccccC
Confidence 9999773 57899999999999999999999998654 4689999999998656 6667964
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=3e-54 Score=407.36 Aligned_cols=267 Identities=39% Similarity=0.617 Sum_probs=233.9
Q ss_pred eeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhc-CCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEE
Q 020257 19 LSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQ-RTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIR 97 (328)
Q Consensus 19 ~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~-~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~ 97 (328)
.+||++.+++|++|+|+ |+|||+|+.||+.... ......||++|.|.+|++++|+|++++|||.|++++..|+||+|+
T Consensus 51 ~~~i~~~~~~ni~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~ 129 (326)
T PF00295_consen 51 SALIYAENAENITITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTIS 129 (326)
T ss_dssp SEEEEEESEEEEECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEE
T ss_pred cEEEEEEceEEEEecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEc
Confidence 68999999999999999 9999999999986543 134578999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccC
Q 020257 98 YVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG 177 (328)
Q Consensus 98 ~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g 177 (328)
+++|.++...+|+||||+.+|+||+|+||+|+++||||++|++ ..||+|+||+|.. ++||+|||++.+
T Consensus 130 ~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~-ghGisiGS~~~~ 197 (326)
T PF00295_consen 130 NITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG-GHGISIGSEGSG 197 (326)
T ss_dssp SEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES-SSEEEEEEESSS
T ss_pred ceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec-cccceeeeccCC
Confidence 9999998777999999999999999999999999999999995 5599999999976 789999999865
Q ss_pred ----CEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEEEEE
Q 020257 178 ----GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIK 253 (328)
Q Consensus 178 ----~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ 253 (328)
.|+||+|+||++.++.+|++||++++++|.|+||+|+||+|+++.+||.|++.|...... ..+...+.|+||+|+
T Consensus 198 ~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~-~~~~~~~~i~nI~~~ 276 (326)
T PF00295_consen 198 GSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPC-GKPPSGVSISNITFR 276 (326)
T ss_dssp SE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEES-SCSSSSSEEEEEEEE
T ss_pred ccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEecccccccc-CcccCCceEEEEEEE
Confidence 499999999999999999999999988999999999999999999999999998752111 122234589999999
Q ss_pred EEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccC
Q 020257 254 DVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS 303 (328)
Q Consensus 254 nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~ 303 (328)
||+++... .++.|.|.+..||+||+|+||++++ + ..++.|.|+...
T Consensus 277 nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g---~~~~~c~nv~~~ 323 (326)
T PF00295_consen 277 NITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G---KKPAQCKNVPSG 323 (326)
T ss_dssp EEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---BSESEEBSCCTT
T ss_pred eeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---CcCeEEECCCCC
Confidence 99999886 6899999999999999999999999 3 356899987653
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-32 Score=269.37 Aligned_cols=206 Identities=37% Similarity=0.580 Sum_probs=179.5
Q ss_pred eeEEEeccEeeE-EEeCCeEEEcCC----chhhhhhh--cCCCCC--CCCeEEEEEeecceEEEeEEEeCCCCcEEEeee
Q 020257 20 SDFLISKFEKIS-FIGENGTIDGQG----AIWWNMWR--QRTLPF--TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVY 90 (328)
Q Consensus 20 ~li~~~~~~nv~-I~G~~G~IdG~g----~~~w~~~~--~~~~~~--~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~ 90 (328)
.++..-..+|.. |.|. |+|+|++ .+||.... ..+... .||+++.|..|.||.++|+++.++|.|++|+..
T Consensus 190 ~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~ 268 (542)
T COG5434 190 DLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVD 268 (542)
T ss_pred ccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeec
Confidence 344444566666 8888 9999864 33776544 112223 799999999999999999999999999999999
Q ss_pred eEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeE
Q 020257 91 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIA 170 (328)
Q Consensus 91 s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ 170 (328)
|+|++++|++|.+.... |+||+|+.+|+||+|++|+|.++||||++|++...++.+...+++||+|+||++..+..++.
T Consensus 269 ~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v 347 (542)
T COG5434 269 CDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLV 347 (542)
T ss_pred ccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceE
Confidence 99999999999997643 99999999999999999999999999999999887765566789999999999998888999
Q ss_pred EeecccCCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEE
Q 020257 171 VGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKI 227 (328)
Q Consensus 171 igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i 227 (328)
+|||+.++++||++|||.|.++.+|||||+..+++|.++||+|++++|.++..+..|
T Consensus 348 ~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 348 LGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred eeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEecccccCcccceee
Confidence 999999999999999999999999999999998999999999999999999644433
No 9
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.92 E-value=8.4e-23 Score=197.98 Aligned_cols=213 Identities=19% Similarity=0.214 Sum_probs=171.7
Q ss_pred CeEEEEEeecceEEEeEEEeCCC---Cc--------EEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEE
Q 020257 60 PNLIEFMNSRSIIISNVIFQNSP---FW--------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI 128 (328)
Q Consensus 60 p~~i~~~~~~nv~i~gi~i~n~~---~~--------~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i 128 (328)
..+|.|.+++++.|.|-...+.. .| .+.+..|+|++|+++++.+++. ..+++..|++|+|++..|
T Consensus 104 ~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I 179 (456)
T PLN03003 104 DQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRI 179 (456)
T ss_pred cceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEE
Confidence 34899999999999997666643 23 6899999999999999999873 448888999999999999
Q ss_pred ecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEeccceeEEEEEecC--CCc
Q 020257 129 STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGG 206 (328)
Q Consensus 129 ~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g--~~g 206 (328)
.+..+ ..++||+++. .++||+|+||.+.++|++|+|++ +.+||+|+||++.. .+||.|+|... ..+
T Consensus 180 ~ap~~------spNTDGIDi~-~S~nV~I~n~~I~tGDDCIaiks----gs~NI~I~n~~c~~-GHGISIGSlg~~g~~~ 247 (456)
T PLN03003 180 NAPES------SPNTDGIDVG-ASSNVVIQDCIIATGDDCIAINS----GTSNIHISGIDCGP-GHGISIGSLGKDGETA 247 (456)
T ss_pred eCCCC------CCCCCcEeec-CcceEEEEecEEecCCCeEEeCC----CCccEEEEeeEEEC-CCCeEEeeccCCCCcc
Confidence 98532 3567887765 38999999999999999999997 46899999999965 58999999742 236
Q ss_pred eEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEEEEEEEEEeecCeeEEEE---ec--C---------CC
Q 020257 207 FIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQ---GL--K---------NS 272 (328)
Q Consensus 207 ~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~---g~--~---------~~ 272 (328)
.|+||+|+|+++.+..++++|+++. .+.+.++||+|+||++.+...|+.|. |. + ..
T Consensus 248 ~V~NV~v~n~~~~~T~nGvRIKT~~----------Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v 317 (456)
T PLN03003 248 TVENVCVQNCNFRGTMNGARIKTWQ----------GGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAV 317 (456)
T ss_pred eEEEEEEEeeEEECCCcEEEEEEeC----------CCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCc
Confidence 7999999999999999999999852 12358999999999999988888773 21 0 13
Q ss_pred CeeeEEEEeEEEEecCCCCCCCeEeee
Q 020257 273 PFTGICLSNINLQGVAGPTSPPLKCSD 299 (328)
Q Consensus 273 ~i~~I~~~nv~i~~~~~~~~~~~~c~~ 299 (328)
.++||+|+||+.+.....+ ..+.|+.
T Consensus 318 ~IsnI~f~NI~GTs~~~~a-i~l~Cs~ 343 (456)
T PLN03003 318 EVSKVVFSNFIGTSKSEYG-VDFRCSE 343 (456)
T ss_pred EEEeEEEEeEEEEeCccce-EEEEeCC
Confidence 6899999999998764322 3355553
No 10
>PLN03010 polygalacturonase
Probab=99.91 E-value=4.1e-22 Score=191.85 Aligned_cols=243 Identities=19% Similarity=0.214 Sum_probs=185.5
Q ss_pred eEEEec-c--EeeEEEeCCeEEEcCCc-hhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC---Cc-EEEeeeeE
Q 020257 21 DFLISK-F--EKISFIGENGTIDGQGA-IWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP---FW-NIHPVYCS 92 (328)
Q Consensus 21 li~~~~-~--~nv~I~G~~G~IdG~g~-~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~---~~-~i~i~~s~ 92 (328)
.|.+.+ | .|+.|.=. |+|-+... ..|.. .....++.|.+.+|+.|.|-..++.. .| .+.+.+|+
T Consensus 95 ~i~l~~pc~~~~v~l~l~-G~l~~~~d~~~w~~-------~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~ 166 (409)
T PLN03010 95 PIEFKGPCKSTSIKVQLD-GIIVAPSNIVAWSN-------PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCD 166 (409)
T ss_pred eEEecCCCCCCcEEEEEc-cEEEccCChhhccC-------CCCcceEEEecccccEEeeceEEeCCCccccceEEEEeec
Confidence 444554 3 46776655 77765432 23421 11234788999999999998777753 35 69999999
Q ss_pred eEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEe
Q 020257 93 NVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVG 172 (328)
Q Consensus 93 nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ig 172 (328)
|++|+++++.+++. .-+++..|++|+|+++.|.+..+ ..++||+++. .++||+|+||++.++|++|+|+
T Consensus 167 nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~------s~NTDGiDi~-~s~nV~I~n~~I~~gDDcIaik 235 (409)
T PLN03010 167 NLTINGITSIDSPK----NHISIKTCNYVAISKINILAPET------SPNTDGIDIS-YSTNINIFDSTIQTGDDCIAIN 235 (409)
T ss_pred CeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCC------CCCCCceeee-ccceEEEEeeEEecCCCeEEec
Confidence 99999999999872 44888899999999999988532 2567887764 3899999999999999999999
Q ss_pred ecccCCEEeEEEEceEEeccceeEEEEEecC--CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEE
Q 020257 173 SETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGI 250 (328)
Q Consensus 173 S~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g--~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI 250 (328)
+. .+|+.|+++.+.. .+||.|+|... ....|+||+|+|+++.+..++++|+++.+ +.+.++||
T Consensus 236 sg----s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~nI 300 (409)
T PLN03010 236 SG----SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYARNI 300 (409)
T ss_pred CC----CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEEEe
Confidence 84 4678888888865 58999999742 23579999999999999999999998521 23589999
Q ss_pred EEEEEEEeecCeeEEEE---ecC---------CCCeeeEEEEeEEEEecCCCCCCCeEee
Q 020257 251 TIKDVWGTKVQQSGLIQ---GLK---------NSPFTGICLSNINLQGVAGPTSPPLKCS 298 (328)
Q Consensus 251 t~~nI~~~~~~~~~~i~---g~~---------~~~i~~I~~~nv~i~~~~~~~~~~~~c~ 298 (328)
+|+||+++..+.|+.|. +.. ...++||+|+||+.+..... ...+.|+
T Consensus 301 tf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~-~i~l~Cs 359 (409)
T PLN03010 301 SFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNEN-AITLKCS 359 (409)
T ss_pred EEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCc-cEEEEeC
Confidence 99999999988888773 221 13589999999999876543 2445554
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.91 E-value=3.3e-22 Score=194.04 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=163.5
Q ss_pred eEEEEEeecceEEEeE--EEeCCCC--------------------cEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCC
Q 020257 61 NLIEFMNSRSIIISNV--IFQNSPF--------------------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSS 118 (328)
Q Consensus 61 ~~i~~~~~~nv~i~gi--~i~n~~~--------------------~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s 118 (328)
.+|.|.+.+||.|.|- ...|... ..+.+.+|+|++|+++++.+++. ..+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 4688999999999983 3333221 24788999999999999999872 44888899
Q ss_pred ccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEeccceeEEE
Q 020257 119 SNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHV 198 (328)
Q Consensus 119 ~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I 198 (328)
+||+|+|++|.+..| ..++||+++. .++||+|+||++.++|++|+|++ +.+||+|+||++.. .+||.|
T Consensus 224 ~nV~i~~v~I~a~~~------spNTDGIdi~-ss~nV~I~n~~I~tGDDcIaIks----gs~nI~I~n~~c~~-GHGisI 291 (431)
T PLN02218 224 SNVQVSNVVVTAPAD------SPNTDGIHIT-NTQNIRVSNSIIGTGDDCISIES----GSQNVQINDITCGP-GHGISI 291 (431)
T ss_pred eeEEEEEEEEeCCCC------CCCCCcEeec-ccceEEEEccEEecCCceEEecC----CCceEEEEeEEEEC-CCCEEE
Confidence 999999999987432 1467777664 38999999999999999999997 47899999999965 589999
Q ss_pred EEecCC--CceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCcEEEEEEEEEEEeecCeeEEEEec---C---
Q 020257 199 KTNIGR--GGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGL---K--- 270 (328)
Q Consensus 199 ~s~~g~--~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~---~--- 270 (328)
+|.... .+.|+||+++|+++.+..++++|+++- .+.+.++||+|+||++.....|+.|... .
T Consensus 292 GS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~ 361 (431)
T PLN02218 292 GSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKC 361 (431)
T ss_pred CcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCC
Confidence 997422 478999999999999999999999751 2346899999999999998888877421 1
Q ss_pred -----CCCeeeEEEEeEEEEecC
Q 020257 271 -----NSPFTGICLSNINLQGVA 288 (328)
Q Consensus 271 -----~~~i~~I~~~nv~i~~~~ 288 (328)
...++||+|+||+.+.+.
T Consensus 362 ~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 362 TSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCCeEEEEEEEEeEEEEecC
Confidence 234899999999998764
No 12
>PLN02793 Probable polygalacturonase
Probab=99.91 E-value=4.9e-22 Score=193.66 Aligned_cols=204 Identities=20% Similarity=0.162 Sum_probs=165.8
Q ss_pred ceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC----CcEEEeeeeEe
Q 020257 18 FLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP----FWNIHPVYCSN 93 (328)
Q Consensus 18 ~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~----~~~i~i~~s~n 93 (328)
.+.+|.+.+++|++|.|- -+.+.. .| .+++.+|+||+|++|++.++. .++|++.+|+|
T Consensus 176 rP~~i~f~~~~nv~v~gi-tl~nSp---~~--------------~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~n 237 (443)
T PLN02793 176 APTAITFHKCKDLRVENL-NVIDSQ---QM--------------HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRG 237 (443)
T ss_pred CceEEEEEeeccEEEECe-EEEcCC---Ce--------------EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccce
Confidence 467999999999999998 555422 22 489999999999999998743 37899999999
Q ss_pred EEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEe
Q 020257 94 VVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVG 172 (328)
Q Consensus 94 v~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ig 172 (328)
|+|+|+.|.+.| |+|.+. .|+||+|+||.+..++ +|+|+|..... ....++||+|+||++.++..|++|+
T Consensus 238 V~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~---~~~~V~nV~v~n~~~~~t~~GirIK 308 (443)
T PLN02793 238 VVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSN---SWSEVRDITVDGAFLSNTDNGVRIK 308 (443)
T ss_pred EEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcC---CCCcEEEEEEEccEEeCCCceEEEE
Confidence 999999999976 788884 6999999999998886 69999842111 1235999999999999999999999
Q ss_pred ecc--cCCEEeEEEEceEEeccceeEEEEEecCC----------CceEEEEEEEeEEEccc-CeeEEEEeeeCCCCCCCC
Q 020257 173 SET--SGGVENVLAEHINLYNVGVGIHVKTNIGR----------GGFIRNITVSDVYMENA-RKGIKIAGDVGDHPDDKF 239 (328)
Q Consensus 173 S~~--~g~i~nI~v~n~~~~~~~~gi~I~s~~g~----------~g~i~nI~f~nI~i~~~-~~~i~i~~~y~~~~~~~~ 239 (328)
+.. .|.++||+|+|++|.+..++|.|...+.+ ...|+||+|+||+.+.. +.++.+...
T Consensus 309 t~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs--------- 379 (443)
T PLN02793 309 TWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACS--------- 379 (443)
T ss_pred EeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeC---------
Confidence 974 35899999999999999999999875422 14699999999998875 346665431
Q ss_pred CCCCCCcEEEEEEEEEEEeec
Q 020257 240 NPNALPVVNGITIKDVWGTKV 260 (328)
Q Consensus 240 ~~~~~~~i~nIt~~nI~~~~~ 260 (328)
++ .+++||+|+||+++..
T Consensus 380 -~~--~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 380 -DS--SPCEGLYLEDVQLLSS 397 (443)
T ss_pred -CC--CCEeeEEEEeeEEEec
Confidence 22 2699999999999854
No 13
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.90 E-value=5.8e-22 Score=187.47 Aligned_cols=205 Identities=24% Similarity=0.260 Sum_probs=164.4
Q ss_pred CCceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCC----cEEEeeee
Q 020257 16 FRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPF----WNIHPVYC 91 (328)
Q Consensus 16 ~~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~~s 91 (328)
..++.||.+.+++|+.|.|. +|- +.. .| .+++.+|+|++|+++++.+++. ++|++..|
T Consensus 89 ~~rp~~i~~~~~~~~~i~~i--~~~-nsp-~w--------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s 150 (326)
T PF00295_consen 89 QRRPRLIRFNNCKNVTIEGI--TIR-NSP-FW--------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSS 150 (326)
T ss_dssp SSSSESEEEEEEEEEEEESE--EEE-S-S-SE--------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESE
T ss_pred ccccceeeeeeecceEEEee--Eec-CCC-ee--------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEee
Confidence 45677999999999999997 443 222 22 4899999999999999987643 68999999
Q ss_pred EeEEEEeEEEEcCCCCCCCCeecccCCc-cEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeE
Q 020257 92 SNVVIRYVTILAPADSPNTDGIDPDSSS-NVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIA 170 (328)
Q Consensus 92 ~nv~I~~v~I~~~~~~~n~DGidi~~s~-nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ 170 (328)
+||+|+|+.|.+.+ |+|.+.+.+ ||+|+||.+..++. +++++... .+. ....+||+++||++.++..|++
T Consensus 151 ~nv~I~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~ghG-isiGS~~~-~~~--~~~i~nV~~~n~~i~~t~~gi~ 221 (326)
T PF00295_consen 151 KNVTIENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGHG-ISIGSEGS-GGS--QNDIRNVTFENCTIINTDNGIR 221 (326)
T ss_dssp EEEEEESEEEESSS-----ESEEESSEECEEEEESEEEESSSE-EEEEEESS-SSE----EEEEEEEEEEEEESESEEEE
T ss_pred eEEEEEEeeccccc-----CcccccccccceEEEeEEEecccc-ceeeeccC-Ccc--ccEEEeEEEEEEEeeccceEEE
Confidence 99999999999976 788887655 99999999998764 99998421 111 1237999999999999999999
Q ss_pred Eeecc--cCCEEeEEEEceEEeccceeEEEEEecCC---------CceEEEEEEEeEEEcccC-eeEEEEeeeCCCCCCC
Q 020257 171 VGSET--SGGVENVLAEHINLYNVGVGIHVKTNIGR---------GGFIRNITVSDVYMENAR-KGIKIAGDVGDHPDDK 238 (328)
Q Consensus 171 igS~~--~g~i~nI~v~n~~~~~~~~gi~I~s~~g~---------~g~i~nI~f~nI~i~~~~-~~i~i~~~y~~~~~~~ 238 (328)
|++.. .|.++||+|+|++|.+...+|.|...+.. ...|+||+|+||+..... .++.+...
T Consensus 222 iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~-------- 293 (326)
T PF00295_consen 222 IKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS-------- 293 (326)
T ss_dssp EEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B--------
T ss_pred EEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC--------
Confidence 99963 46899999999999999999999865321 258999999999999876 67766531
Q ss_pred CCCCCCCcEEEEEEEEEEEee
Q 020257 239 FNPNALPVVNGITIKDVWGTK 259 (328)
Q Consensus 239 ~~~~~~~~i~nIt~~nI~~~~ 259 (328)
+. .+++||+|+||.++.
T Consensus 294 --~~--~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 294 --PG--SPCSNITFENVNITG 310 (326)
T ss_dssp --TT--SSEEEEEEEEEEEES
T ss_pred --Cc--CcEEeEEEEeEEEEc
Confidence 22 269999999999987
No 14
>PLN02155 polygalacturonase
Probab=99.90 E-value=3.7e-21 Score=184.79 Aligned_cols=204 Identities=17% Similarity=0.170 Sum_probs=163.4
Q ss_pred ceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC----CcEEEeeeeEe
Q 020257 18 FLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP----FWNIHPVYCSN 93 (328)
Q Consensus 18 ~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~----~~~i~i~~s~n 93 (328)
++.+|.+.+++|+.|.|- ++- + .+. +.+++.+|+||+|++|++.++. .++|++..|+|
T Consensus 144 ~p~~i~~~~~~nv~i~gi--tl~-n-Sp~--------------w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~n 205 (394)
T PLN02155 144 GVRSISFNSAKDVIISGV--KSM-N-SQV--------------SHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTG 205 (394)
T ss_pred cccceeEEEeeeEEEECe--EEE-c-CCC--------------eEEEEECeeeEEEEEEEEECCCCCCCCCcccccccee
Confidence 345899999999999997 442 2 222 3599999999999999998743 27899999999
Q ss_pred EEEEeEEEEcCCCCCCCCeecccC-CccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEe
Q 020257 94 VVIRYVTILAPADSPNTDGIDPDS-SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVG 172 (328)
Q Consensus 94 v~I~~v~I~~~~~~~n~DGidi~~-s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ig 172 (328)
|+|+|+.|.+.| |+|.+.+ |+||+|+||.+..++ +|+|+|..... .....+||+|+||++.++..|++||
T Consensus 206 V~I~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~---~~~~V~nV~v~n~~~~~t~~GirIK 276 (394)
T PLN02155 206 VTFTGSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKEL---NEDGVENVTVSSSVFTGSQNGVRIK 276 (394)
T ss_pred EEEEeeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccC---CCCcEEEEEEEeeEEeCCCcEEEEE
Confidence 999999999986 7888864 789999999999876 69999941110 0235899999999999999999999
Q ss_pred ec---ccCCEEeEEEEceEEeccceeEEEEEecCC----------CceEEEEEEEeEEEccc-CeeEEEEeeeCCCCCCC
Q 020257 173 SE---TSGGVENVLAEHINLYNVGVGIHVKTNIGR----------GGFIRNITVSDVYMENA-RKGIKIAGDVGDHPDDK 238 (328)
Q Consensus 173 S~---~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~----------~g~i~nI~f~nI~i~~~-~~~i~i~~~y~~~~~~~ 238 (328)
+. ..|.++||+|+|++|.+...+|.|...+.. ...|+||+|+||+.... +.++.+...
T Consensus 277 T~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~-------- 348 (394)
T PLN02155 277 SWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS-------- 348 (394)
T ss_pred EecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC--------
Confidence 94 246899999999999999999999764421 13699999999999876 456555431
Q ss_pred CCCCCCCcEEEEEEEEEEEeec
Q 020257 239 FNPNALPVVNGITIKDVWGTKV 260 (328)
Q Consensus 239 ~~~~~~~~i~nIt~~nI~~~~~ 260 (328)
+ . .+++||+|+||.++..
T Consensus 349 --~-~-~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 349 --K-S-SPCTGITLQDIKLTYN 366 (394)
T ss_pred --C-C-CCEEEEEEEeeEEEec
Confidence 1 2 2699999999999864
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.89 E-value=4.2e-21 Score=185.11 Aligned_cols=205 Identities=17% Similarity=0.176 Sum_probs=163.4
Q ss_pred CceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC----CcEEEeeeeE
Q 020257 17 RFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP----FWNIHPVYCS 92 (328)
Q Consensus 17 ~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~----~~~i~i~~s~ 92 (328)
.++.+|.+.+++|+.|.|- -+.+ .+.| .+++.+|+||+|+++++.++. .++|++.+|+
T Consensus 153 ~rP~~i~f~~~~nv~i~gi-tl~n---Sp~w--------------~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~ 214 (404)
T PLN02188 153 LLPTSVKFVNMNNTVVRGI-TSVN---SKFF--------------HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSS 214 (404)
T ss_pred cCceEEEEEeeeeEEEeCe-EEEc---CCCe--------------EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcc
Confidence 3456999999999999998 3443 2233 599999999999999998643 3789999999
Q ss_pred eEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEE
Q 020257 93 NVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAV 171 (328)
Q Consensus 93 nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~i 171 (328)
||+|.|+.|.+.+ |+|.+. .++||+|+|+....++ +|+++|- +.+. .....+||+|+||++.++..|++|
T Consensus 215 nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-GisiGSl-G~~~--~~~~V~nV~v~n~~~~~t~~Giri 285 (404)
T PLN02188 215 GVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GISVGSL-GRYP--NEGDVTGLVVRDCTFTGTTNGIRI 285 (404)
T ss_pred cEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cEEeCCC-CCCC--cCCcEEEEEEEeeEEECCCcEEEE
Confidence 9999999999976 788885 5789999999998775 6999882 1110 123589999999999999999999
Q ss_pred eecc----cCCEEeEEEEceEEeccceeEEEEEecC----------CCceEEEEEEEeEEEccc-CeeEEEEeeeCCCCC
Q 020257 172 GSET----SGGVENVLAEHINLYNVGVGIHVKTNIG----------RGGFIRNITVSDVYMENA-RKGIKIAGDVGDHPD 236 (328)
Q Consensus 172 gS~~----~g~i~nI~v~n~~~~~~~~gi~I~s~~g----------~~g~i~nI~f~nI~i~~~-~~~i~i~~~y~~~~~ 236 (328)
|+.. .|.++||+|+|++|.+...+|.|...+. ....|+||+|+||+.+.. +.++.+...
T Consensus 286 Kt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs------ 359 (404)
T PLN02188 286 KTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCS------ 359 (404)
T ss_pred EEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEEC------
Confidence 9852 3579999999999999999999986431 135799999999999876 446555431
Q ss_pred CCCCCCCCCcEEEEEEEEEEEeec
Q 020257 237 DKFNPNALPVVNGITIKDVWGTKV 260 (328)
Q Consensus 237 ~~~~~~~~~~i~nIt~~nI~~~~~ 260 (328)
+ . .+++||+|+||.++..
T Consensus 360 ----~-~-~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 360 ----R-G-VPCQGVYLQDVHLDLS 377 (404)
T ss_pred ----C-C-CCEeeEEEEeeEEEec
Confidence 2 2 3699999999999754
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.75 E-value=5e-16 Score=149.98 Aligned_cols=238 Identities=18% Similarity=0.186 Sum_probs=139.8
Q ss_pred eeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcC--------CCCCCCCeEEEE---EeecceEEEeEEEeCCCCcEEE
Q 020257 19 LSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQR--------TLPFTRPNLIEF---MNSRSIIISNVIFQNSPFWNIH 87 (328)
Q Consensus 19 ~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~--------~~~~~rp~~i~~---~~~~nv~i~gi~i~n~~~~~i~ 87 (328)
-++.+...++|++|+|+ |+|+|.-..|.+..... ......=+|+.+ ..+.++.++|++|.+||.|++.
T Consensus 269 GAf~~~~~~~nv~i~G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~ 347 (582)
T PF03718_consen 269 GAFEYTDTQQNVKITGR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMD 347 (582)
T ss_dssp S-EEE---SSEEEEESS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEE
T ss_pred EEEEEccCCceEEEEee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEE
Confidence 35555668999999999 99999877664321111 001112246654 4456999999999999999999
Q ss_pred eeeeE----eEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEe
Q 020257 88 PVYCS----NVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 163 (328)
Q Consensus 88 i~~s~----nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~ 163 (328)
+.+-+ +..|+|.++... +.+++||+.+. ++-+|+|||+++.||+|.+. -+++.|+||++|
T Consensus 348 l~g~~~~~~~~~i~nyKqVGa-W~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViW 411 (582)
T PF03718_consen 348 LYGNENDKFSMNISNYKQVGA-WYFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIW 411 (582)
T ss_dssp EESSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEE
T ss_pred ecCCccccccceeeceeeeee-EEeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEE
Confidence 99555 589999999975 46899999985 77888999999999998554 389999999999
Q ss_pred CC--CceeEEeecccCCEEeEEEEceEEeccc---------eeEEEEEe-c---CC------CceEEEEEEEeEEEcccC
Q 020257 164 SP--FSGIAVGSETSGGVENVLAEHINLYNVG---------VGIHVKTN-I---GR------GGFIRNITVSDVYMENAR 222 (328)
Q Consensus 164 ~~--~~gi~igS~~~g~i~nI~v~n~~~~~~~---------~gi~I~s~-~---g~------~g~i~nI~f~nI~i~~~~ 222 (328)
.. +.-+.+|.. ...++||+|+|+.+.++. .+|.--+. . +. .-.|++++|+|++.+..-
T Consensus 412 k~~Ngpiiq~GW~-pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 412 KNENGPIIQWGWT-PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMC 490 (582)
T ss_dssp E-SSS-SEE--CS----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE
T ss_pred ecCCCCeEEeecc-ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEeccc
Confidence 75 444666654 356999999999999862 34433322 1 11 136899999999999863
Q ss_pred -eeEEEEeeeCCCCCCCCCCCCCCcEEEEEEEEEEEee--cC----eeEEEE---ec---CCCCeeeEEEEeEEEEecC
Q 020257 223 -KGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTK--VQ----QSGLIQ---GL---KNSPFTGICLSNINLQGVA 288 (328)
Q Consensus 223 -~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~--~~----~~~~i~---g~---~~~~i~~I~~~nv~i~~~~ 288 (328)
..+.|.. +...+|+.++|+.+.. .. ....+. +. ......+|.|+|.++.++.
T Consensus 491 ~~l~ri~p--------------lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 491 PCLFRIYP--------------LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp -ECEEE----------------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred ceeEEEee--------------cCCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCEE
Confidence 3444431 2356777777777662 10 011111 11 1235789999999997654
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=4.5e-16 Score=153.36 Aligned_cols=225 Identities=19% Similarity=0.182 Sum_probs=166.3
Q ss_pred EeecccCCceeeEEEeccEeeEEEeCCeEEEcCCc--hhhhhhhcC---------CCCCCCCeEEEEEeecceEEEeEEE
Q 020257 10 WISNAIFRFLSDFLISKFEKISFIGENGTIDGQGA--IWWNMWRQR---------TLPFTRPNLIEFMNSRSIIISNVIF 78 (328)
Q Consensus 10 w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g~--~~w~~~~~~---------~~~~~rp~~i~~~~~~nv~i~gi~i 78 (328)
|....++.+.+.+++..+.+..|.+. |.+|+.+. .||...... ...+.|++. .+..-. -....+.-
T Consensus 157 ~~~~~~~~~~~~~~a~~~~~~~~~~~-g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~-~~~~~g-~~~~~i~~ 233 (542)
T COG5434 157 FTSRFNGNSGPYVYATDSDNAMISGE-GLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDK-WFSGLG-AVETRIGG 233 (542)
T ss_pred cccccccccCcceeeecccCceeeee-cccccCcccceeccCCceEEEeccceecCccccchhh-hhhccc-chhhcccc
Confidence 44555677889999999999999999 98887332 244322110 011122221 000000 01111111
Q ss_pred eCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEE
Q 020257 79 QNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIR 158 (328)
Q Consensus 79 ~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~ 158 (328)
.-....++.+..|+||++++++|.+++ ..++++..|+|++++|..|.+.++. ++||++.. .|+||+|+
T Consensus 234 ~~~rp~~~~l~~c~NV~~~g~~i~ns~----~~~~h~~~~~nl~~~nl~I~~~~~~-------NtDG~d~~-sc~NvlI~ 301 (542)
T COG5434 234 KGVRPRTVVLKGCRNVLLEGLNIKNSP----LWTVHPVDCDNLTFRNLTIDANRFD-------NTDGFDPG-SCSNVLIE 301 (542)
T ss_pred cCcCCceEEEeccceEEEeeeEecCCC----cEEEeeecccCceecceEEECCCCC-------CCCccccc-cceeEEEe
Confidence 112446899999999999999999986 2779999999999999999987642 45666553 49999999
Q ss_pred eEEEeCCCceeEEeeccc-------CCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeee
Q 020257 159 RVTGSSPFSGIAVGSETS-------GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDV 231 (328)
Q Consensus 159 nc~~~~~~~gi~igS~~~-------g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y 231 (328)
+|+|..++++|+++|... +..+||+|+||.|.....++.++++ .+|.|+||++||+.|.+..+++.|+...
T Consensus 302 ~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse--~~ggv~ni~ved~~~~~~d~GLRikt~~ 379 (542)
T COG5434 302 GCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE--MGGGVQNITVEDCVMDNTDRGLRIKTND 379 (542)
T ss_pred ccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee--cCCceeEEEEEeeeeccCcceeeeeeec
Confidence 999999999999998632 3569999999999987778888888 5799999999999999999999999753
Q ss_pred CCCCCCCCCCCCCCcEEEEEEEEEEEeecC
Q 020257 232 GDHPDDKFNPNALPVVNGITIKDVWGTKVQ 261 (328)
Q Consensus 232 ~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~ 261 (328)
. +.+.++||+|+++++....
T Consensus 380 ~----------~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 380 G----------RGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred c----------cceeEEEEEEecccccCcc
Confidence 2 2368999999999988764
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.18 E-value=1.3e-09 Score=102.58 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=127.7
Q ss_pred eEEEeccEeeEEEeCCe----EEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEE
Q 020257 21 DFLISKFEKISFIGENG----TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVI 96 (328)
Q Consensus 21 li~~~~~~nv~I~G~~G----~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I 96 (328)
-|.+. .++|+|.|. | +||+.++.- ....+. ..+++|+|+++++.++..++|.+..|++++|
T Consensus 26 ~l~I~-~~~Iti~G~-g~~~tvid~~~~~~------------~~~~i~-v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I 90 (314)
T TIGR03805 26 TLSLD-ADGVTIRGA-GMDETILDFSGQVG------------GAEGLL-VTSDDVTLSDLAVENTKGDGVKVKGSDGIII 90 (314)
T ss_pred eEEEe-CCCeEEEec-CCCccEEecccCCC------------CCceEE-EEeCCeEEEeeEEEcCCCCeEEEeCCCCEEE
Confidence 34443 478999997 5 477766421 123343 3589999999999999999999999999999
Q ss_pred EeEEEEcCCC---CCCCCeecccCCccEEEEeeEEecCC-ceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEe
Q 020257 97 RYVTILAPAD---SPNTDGIDPDSSSNVCIEDSYISTGD-DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVG 172 (328)
Q Consensus 97 ~~v~I~~~~~---~~n~DGidi~~s~nV~I~n~~i~~~D-D~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~ig 172 (328)
+++++..... ....+||.+..|++++|++|+++... ++|-++. ++|++|+|++++....||.+-
T Consensus 91 ~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 91 RRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred EeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccCcceEEEE
Confidence 9999974321 12358999999999999999998864 4777754 799999999998878888875
Q ss_pred ecccCCEEeEEEEceEEeccceeEEEEEecCCC-ceEEEEEEEeEEEccc
Q 020257 173 SETSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITVSDVYMENA 221 (328)
Q Consensus 173 S~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~-g~i~nI~f~nI~i~~~ 221 (328)
. ..++.|++..+.+...|+.+-..++.. ..-+++++++-++.+.
T Consensus 159 ~-----S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 159 N-----SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred e-----cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 2 467889999998877899886654321 2336777777776644
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.97 E-value=3e-08 Score=95.66 Aligned_cols=158 Identities=19% Similarity=0.112 Sum_probs=122.5
Q ss_pred eeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEe
Q 020257 19 LSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRY 98 (328)
Q Consensus 19 ~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~ 98 (328)
.+++...+++||+|+|. +|+|.|..| ..||.+|++..|++++|++.+|+++..|+|.+..|+ ..|.+
T Consensus 106 ~~lIiai~A~nVTIsGL--tIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~ 172 (455)
T TIGR03808 106 PSLLSSEGADGIGLSGL--TLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISG 172 (455)
T ss_pred ceEEEEecCCCeEEEee--EEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEec
Confidence 57888889999999997 999999754 247889999999999999999999999999999999 77777
Q ss_pred EEEEcCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccC-----------------------ccccCcccC-CCcc
Q 020257 99 VTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSG-----------------------WDEYGIAYG-HPSS 153 (328)
Q Consensus 99 v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~iaiks~-----------------------~~~~g~~~~-~~~~ 153 (328)
-+|.... ..+|++..+++++|++-+|.. .|++|.+... .++.|-.+. ..+.
T Consensus 173 N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~ 248 (455)
T TIGR03808 173 NTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAG 248 (455)
T ss_pred ceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccC
Confidence 7776643 355999899999999999876 5667766521 134442222 2578
Q ss_pred cEEEEeEEEeCCC-ceeEEeecccCCEEeEEEEceEEeccce-eEEE
Q 020257 154 GITIRRVTGSSPF-SGIAVGSETSGGVENVLAEHINLYNVGV-GIHV 198 (328)
Q Consensus 154 nV~I~nc~~~~~~-~gi~igS~~~g~i~nI~v~n~~~~~~~~-gi~I 198 (328)
+++|++..++... +||.+-+ .+|+.|++..|.+... +|..
T Consensus 249 ~v~V~gN~I~~~r~dgI~~ns-----ss~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 249 NVIVRGNRIRNCDYSAVRGNS-----ASNIQITGNSVSDVREVALYS 290 (455)
T ss_pred CeEEECCEEeccccceEEEEc-----ccCcEEECcEeeeeeeeEEEE
Confidence 9999999998877 8998865 4677777777776554 5443
No 20
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.93 E-value=2.2e-08 Score=89.71 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=88.1
Q ss_pred CCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCC-----CCeecc------cCCccEEEEee
Q 020257 58 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPN-----TDGIDP------DSSSNVCIEDS 126 (328)
Q Consensus 58 ~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n-----~DGidi------~~s~nV~I~n~ 126 (328)
..|. .|+.|++++++++++-|++- .+..|++|+++|+.+.+.....+ -||+.+ ..++||.|+|+
T Consensus 89 ~apK--~fR~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns 163 (277)
T PF12541_consen 89 QAPK--MFRECSNITLENVDIPDADE---TLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNS 163 (277)
T ss_pred cCch--HhhcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEcc
Confidence 3454 35589999999999988774 24457777777777733211111 122222 35888888888
Q ss_pred EEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEeccceeEEEEEecCCCc
Q 020257 127 YISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGG 206 (328)
Q Consensus 127 ~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g 206 (328)
.+.+.| + -| .++||+|.|+++.+. -+|. ..+||++.||++.+.+ .--
T Consensus 164 ~l~sKD-A-----FW---------n~eNVtVyDS~i~GE----YLgW----~SkNltliNC~I~g~Q----------pLC 210 (277)
T PF12541_consen 164 KLDSKD-A-----FW---------NCENVTVYDSVINGE----YLGW----NSKNLTLINCTIEGTQ----------PLC 210 (277)
T ss_pred EEeccc-c-----cc---------cCCceEEEcceEeee----EEEE----EcCCeEEEEeEEeccC----------ccE
Confidence 888765 1 12 488999999888653 2222 3589999999987764 246
Q ss_pred eEEEEEEEeEEEcccCeeE
Q 020257 207 FIRNITVSDVYMENARKGI 225 (328)
Q Consensus 207 ~i~nI~f~nI~i~~~~~~i 225 (328)
+++|++.+|++|.+++.++
T Consensus 211 Y~~~L~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 211 YCDNLVLENCTMIDTDLAF 229 (277)
T ss_pred eecceEEeCcEeecceeee
Confidence 7889999999999877654
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.75 E-value=1.8e-06 Score=81.42 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=114.9
Q ss_pred EEEEEeecceEEEeEEEeC-------CCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCce
Q 020257 62 LIEFMNSRSIIISNVIFQN-------SPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDL 134 (328)
Q Consensus 62 ~i~~~~~~nv~i~gi~i~n-------~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~ 134 (328)
.|.+..|++++|+++++.. ...++|.+..|++++|+++++.... .+||-+..|++++|+++.+.....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC----cccEEECCCCCeEEECCEEccCcce
Confidence 5788999999999999962 2458999999999999999998753 2599999999999999999988878
Q ss_pred EEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeeccc---CCEEeEEEEceEEeccc-eeEE-----EEEecCCC
Q 020257 135 VAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS---GGVENVLAEHINLYNVG-VGIH-----VKTNIGRG 205 (328)
Q Consensus 135 iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~---g~i~nI~v~n~~~~~~~-~gi~-----I~s~~g~~ 205 (328)
|-+-. +.+++|++..+.....||.+-+... ...++++|++..+.+.. ..+. +...+...
T Consensus 155 I~i~~------------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~ 222 (314)
T TIGR03805 155 IEIEN------------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGT 222 (314)
T ss_pred EEEEe------------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCc
Confidence 77653 6889999999888778998855432 24589999999998652 1111 11112223
Q ss_pred ceE----EEEEEEeEEEcccCe-eEEEE
Q 020257 206 GFI----RNITVSDVYMENARK-GIKIA 228 (328)
Q Consensus 206 g~i----~nI~f~nI~i~~~~~-~i~i~ 228 (328)
|.+ +++.|+|-++++... ++.+.
T Consensus 223 Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 223 GVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred EEEEEcccceEEECCEEeCCcceeEEEE
Confidence 433 899999999998854 55554
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.70 E-value=1.8e-07 Score=77.92 Aligned_cols=139 Identities=29% Similarity=0.288 Sum_probs=97.2
Q ss_pred EEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcc
Q 020257 63 IEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 142 (328)
Q Consensus 63 i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~ 142 (328)
|.+....+++|++.+|.+...+++.+..+..++|++++|... ..|+.+....+++|++|.+.....++.+.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~---- 73 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISNG-----GYGIYVSGGSNVTISNNTISDNGSGIYVS---- 73 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEESS-----TTSEEEECCES-EEES-EEES-SEEEECC----
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECC-----CcEEEEecCCCeEEECeEEEEccceEEEE----
Confidence 667778889999999999999999999999999999999982 47899988899999999999877444333
Q ss_pred ccCcccCCCcccEEEEeEEEeCCCc-eeEEeecccCCEEeEEEEceEEeccc-eeEEEEEecCCCceEEEEEEEeEEEcc
Q 020257 143 EYGIAYGHPSSGITIRRVTGSSPFS-GIAVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMEN 220 (328)
Q Consensus 143 ~~g~~~~~~~~nV~I~nc~~~~~~~-gi~igS~~~g~i~nI~v~n~~~~~~~-~gi~I~s~~g~~g~i~nI~f~nI~i~~ 220 (328)
...+++|++|.+....+ ||.+.. ..++++|+++++.+.. .|+.+.... -.++++++.++.+
T Consensus 74 --------~~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 74 --------GSSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISN 136 (158)
T ss_dssp --------S-CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEEC
T ss_pred --------ecCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEe
Confidence 37899999999988744 888853 2568999999999876 788876542 2367777777776
Q ss_pred cC-eeEEE
Q 020257 221 AR-KGIKI 227 (328)
Q Consensus 221 ~~-~~i~i 227 (328)
.. .++.+
T Consensus 137 ~~~~gi~~ 144 (158)
T PF13229_consen 137 NGGNGIYL 144 (158)
T ss_dssp ESSEEEE-
T ss_pred CcceeEEE
Confidence 64 55543
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.70 E-value=2.3e-07 Score=83.15 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=94.8
Q ss_pred EeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEc
Q 020257 24 ISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILA 103 (328)
Q Consensus 24 ~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~ 103 (328)
|..++||+|... .|.-..+..|......=+....----.+.+|+|+.|+++.+.. ...|.+|+||+|+|.+|.+
T Consensus 94 fR~~~~i~L~nv--~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~s 167 (277)
T PF12541_consen 94 FRECSNITLENV--DIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDS 167 (277)
T ss_pred hhcccCcEEEee--EeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEec
Confidence 446778888776 6633445566532210000000012345678888888888863 4578899999999999998
Q ss_pred CCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEE
Q 020257 104 PADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVL 183 (328)
Q Consensus 104 ~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~ 183 (328)
.+- +..|+||+|.|++|... . .++.++|+++.||++.+ ..||. .+.|++
T Consensus 168 KDA--------FWn~eNVtVyDS~i~GE-----------Y----LgW~SkNltliNC~I~g-~QpLC-------Y~~~L~ 216 (277)
T PF12541_consen 168 KDA--------FWNCENVTVYDSVINGE-----------Y----LGWNSKNLTLINCTIEG-TQPLC-------YCDNLV 216 (277)
T ss_pred ccc--------cccCCceEEEcceEeee-----------E----EEEEcCCeEEEEeEEec-cCccE-------eecceE
Confidence 642 23699999999998632 1 22358999999999987 45654 589999
Q ss_pred EEceEEeccceeEEE
Q 020257 184 AEHINLYNVGVGIHV 198 (328)
Q Consensus 184 v~n~~~~~~~~gi~I 198 (328)
.+||+|.+++.++.-
T Consensus 217 l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 217 LENCTMIDTDLAFEY 231 (277)
T ss_pred EeCcEeecceeeeee
Confidence 999999988765544
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.60 E-value=2e-06 Score=83.24 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=117.6
Q ss_pred eEEEeccEeeEEEeCCeE----EEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC------CcEEEeee
Q 020257 21 DFLISKFEKISFIGENGT----IDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP------FWNIHPVY 90 (328)
Q Consensus 21 li~~~~~~nv~I~G~~G~----IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~------~~~i~i~~ 90 (328)
-|.+. ++++|.|..|. |+|+ ..++.-...++|+|+|++|.++. ...|.+..
T Consensus 82 ~L~L~--spltL~G~~gAt~~vIdG~-----------------~~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~ 142 (455)
T TIGR03808 82 PLRLP--SGAQLIGVRGATRLVFTGG-----------------PSLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQG 142 (455)
T ss_pred cEEEC--CCcEEEecCCcEEEEEcCC-----------------ceEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEcc
Confidence 34444 46888887554 5543 23566677999999999999865 34789999
Q ss_pred eEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEE-ecCCceEEEccCccccCcccCCCcccEEEEeEEEeCC-Cce
Q 020257 91 CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI-STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSG 168 (328)
Q Consensus 91 s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i-~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~g 168 (328)
|++++|++++|.++. ..||.+..|+ ..|.+..| ...+..|.+. .+++++|++.++.+. ++|
T Consensus 143 a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~I~lw------------~S~g~~V~~N~I~g~RD~g 205 (455)
T TIGR03808 143 GRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTAIVSF------------DALGLIVARNTIIGANDNG 205 (455)
T ss_pred CCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccceEEEe------------ccCCCEEECCEEEccCCCC
Confidence 999999999999852 2689999898 55555555 4455554332 389999999998876 666
Q ss_pred eEEeec-------------------------ccC------CEEeEEEEceEEeccc-eeEEEEEecCCCceEEEEEEEeE
Q 020257 169 IAVGSE-------------------------TSG------GVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDV 216 (328)
Q Consensus 169 i~igS~-------------------------~~g------~i~nI~v~n~~~~~~~-~gi~I~s~~g~~g~i~nI~f~nI 216 (328)
|.|--. ..| ...+++|++.++.++. .||++.+. +|++|++-
T Consensus 206 i~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nss-------s~~~i~~N 278 (455)
T TIGR03808 206 IEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSA-------SNIQITGN 278 (455)
T ss_pred eEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcc-------cCcEEECc
Confidence 766521 011 2578889999999888 89988765 57777777
Q ss_pred EEcccCe-eEEE
Q 020257 217 YMENARK-GIKI 227 (328)
Q Consensus 217 ~i~~~~~-~i~i 227 (328)
+++++++ +++.
T Consensus 279 ~~~~~R~~alhy 290 (455)
T TIGR03808 279 SVSDVREVALYS 290 (455)
T ss_pred EeeeeeeeEEEE
Confidence 7777776 6654
No 25
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.59 E-value=1.3e-06 Score=85.55 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=112.1
Q ss_pred EeecceEEEeEEEeCCC----------------------------CcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccC
Q 020257 66 MNSRSIIISNVIFQNSP----------------------------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS 117 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~----------------------------~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~ 117 (328)
..++|++|.|-.++... .|++....+++..+++++|..++. ..+++..
T Consensus 275 ~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g 350 (582)
T PF03718_consen 275 DTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPF----HSMDLYG 350 (582)
T ss_dssp --SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-----SEEEES
T ss_pred cCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCc----ceEEecC
Confidence 47888998876655321 234456678899999999999873 3367754
Q ss_pred Cc----cEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEeccc
Q 020257 118 SS----NVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVG 193 (328)
Q Consensus 118 s~----nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~ 193 (328)
.+ +..|+|..+... =..++||+.+ .+|-+|+||.++..+++|++- -+++.++||+++...
T Consensus 351 ~~~~~~~~~i~nyKqVGa-------W~~qtDGi~l---y~nS~i~dcF~h~nDD~iKlY------hS~v~v~~~ViWk~~ 414 (582)
T PF03718_consen 351 NENDKFSMNISNYKQVGA-------WYFQTDGIEL---YPNSTIRDCFIHVNDDAIKLY------HSNVSVSNTVIWKNE 414 (582)
T ss_dssp SSGGGEEEEEEEEEEE----------CTT----B-----TT-EEEEEEEEESS-SEE--------STTEEEEEEEEEE-S
T ss_pred Cccccccceeeceeeeee-------EEeccCCccc---cCCCeeeeeEEEecCchhhee------ecCcceeeeEEEecC
Confidence 33 478888887531 0234566543 678899999999999999874 379999999999876
Q ss_pred eeEEEEE-ecCCCceEEEEEEEeEEEcccC---------eeEEEEe-eeCCCCCC-CCCCCCCCcEEEEEEEEEEEeecC
Q 020257 194 VGIHVKT-NIGRGGFIRNITVSDVYMENAR---------KGIKIAG-DVGDHPDD-KFNPNALPVVNGITIKDVWGTKVQ 261 (328)
Q Consensus 194 ~gi~I~s-~~g~~g~i~nI~f~nI~i~~~~---------~~i~i~~-~y~~~~~~-~~~~~~~~~i~nIt~~nI~~~~~~ 261 (328)
+|--|.- | ....++||+|+|+.+...+ .+|+-.. .|...... ..+|. -.||+++|+||+.++.-
T Consensus 415 Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~--~ti~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 415 NGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPS--TTIRNMTFSNVRCEGMC 490 (582)
T ss_dssp SS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEE--EEEEEEEEEEEEEECCE
T ss_pred CCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcc--cceeeEEEEeEEEeccc
Confidence 5544532 3 4677999999999998663 1343332 34221111 11122 27999999999998753
Q ss_pred -eeEEEEecCCCCeeeEEEEeEEEEec
Q 020257 262 -QSGLIQGLKNSPFTGICLSNINLQGV 287 (328)
Q Consensus 262 -~~~~i~g~~~~~i~~I~~~nv~i~~~ 287 (328)
-.+.|. |-..-+|+.++|+.+..-
T Consensus 491 ~~l~ri~--plqn~~nl~ikN~~~~~w 515 (582)
T PF03718_consen 491 PCLFRIY--PLQNYDNLVIKNVHFESW 515 (582)
T ss_dssp -ECEEE----SEEEEEEEEEEEEECEE
T ss_pred ceeEEEe--ecCCCcceEEEEeecccc
Confidence 223443 333456677888887743
No 26
>smart00656 Amb_all Amb_all domain.
Probab=98.41 E-value=3.4e-06 Score=73.88 Aligned_cols=97 Identities=30% Similarity=0.342 Sum_probs=72.8
Q ss_pred EEEeeeeEeEEEEeEEEEcCCC--CCCCCeecccCCccEEEEeeEEecC----------CceEEEccCccccCcccCCCc
Q 020257 85 NIHPVYCSNVVIRYVTILAPAD--SPNTDGIDPDSSSNVCIEDSYISTG----------DDLVAVKSGWDEYGIAYGHPS 152 (328)
Q Consensus 85 ~i~i~~s~nv~I~~v~I~~~~~--~~n~DGidi~~s~nV~I~n~~i~~~----------DD~iaiks~~~~~g~~~~~~~ 152 (328)
.|.+..++||.|+|++|..... .++.|+|.+..+++|.|++|.+..+ |..+.++. ++
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~-----------~s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKN-----------GS 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECc-----------cc
Confidence 3445556788888888876532 2467999999999999999999986 44445554 48
Q ss_pred ccEEEEeEEEeCCCceeEEeeccc---CCEEeEEEEceEEecc
Q 020257 153 SGITIRRVTGSSPFSGIAVGSETS---GGVENVLAEHINLYNV 192 (328)
Q Consensus 153 ~nV~I~nc~~~~~~~gi~igS~~~---g~i~nI~v~n~~~~~~ 192 (328)
.+|+|++|+|....-++.+|+... ....+|++.++.+.+.
T Consensus 102 ~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 999999999988788888987422 2345799999988764
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.36 E-value=1.1e-05 Score=67.16 Aligned_cols=141 Identities=29% Similarity=0.278 Sum_probs=98.4
Q ss_pred EEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEE
Q 020257 22 FLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTI 101 (328)
Q Consensus 22 i~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I 101 (328)
|++.+..+++|.+- .|...+ ...|++..+..+.|++-+|.+ ...++.+....+++|+++++
T Consensus 3 i~i~~~~~~~i~~~--~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~ 63 (158)
T PF13229_consen 3 ISINNGSNVTIRNC--TISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTI 63 (158)
T ss_dssp EEETTCEC-EEESE--EEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EE
T ss_pred EEEECCcCeEEeee--EEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEE
Confidence 56777788888884 776432 235888888889999999998 66789999999999999999
Q ss_pred EcCCCCCCCCeecccCCccEEEEeeEEecCCc-eEEEccCccccCcccCCCcccEEEEeEEEeCC-CceeEEeecccCCE
Q 020257 102 LAPADSPNTDGIDPDSSSNVCIEDSYISTGDD-LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGV 179 (328)
Q Consensus 102 ~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD-~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi~igS~~~g~i 179 (328)
.... .|+.+..+.+++|++|.|....+ +|.+.. +.++++|++|++... ..|+.+.... -
T Consensus 64 ~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~ 124 (158)
T PF13229_consen 64 SDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN-----------SSSNVTIENNTIHNNGGSGIYLEGGS---S 124 (158)
T ss_dssp ES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC-----------EECS-EEES-EEECCTTSSCEEEECC----
T ss_pred EEcc-----ceEEEEecCCceecCcEEEcCCCccEEEec-----------cCCCEEEEeEEEEeCcceeEEEECCC---C
Confidence 9853 68888899999999999988654 776653 268899999999986 4888886532 4
Q ss_pred EeEEEEceEEeccc-eeEEEEE
Q 020257 180 ENVLAEHINLYNVG-VGIHVKT 200 (328)
Q Consensus 180 ~nI~v~n~~~~~~~-~gi~I~s 200 (328)
.+++|+++++.+.. .|+.+..
T Consensus 125 ~~~~i~~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 125 PNVTIENNTISNNGGNGIYLIS 146 (158)
T ss_dssp -S-EEECEEEECESSEEEE-TT
T ss_pred CeEEEEEEEEEeCcceeEEEEC
Confidence 58899999998865 6777643
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.29 E-value=3.8e-05 Score=69.24 Aligned_cols=112 Identities=31% Similarity=0.175 Sum_probs=71.7
Q ss_pred EEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCcc
Q 020257 63 IEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 142 (328)
Q Consensus 63 i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~ 142 (328)
+.+..+.+++|++.++.+. .++|++..|++++|++..+... ..||.+..+.+.+|++..|.....+|.+..
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~--- 108 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG--- 108 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee---
Confidence 4666677777777777665 5667777777777777777663 266777666656777777766655665543
Q ss_pred ccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEecc-ceeEE
Q 020257 143 EYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV-GVGIH 197 (328)
Q Consensus 143 ~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~-~~gi~ 197 (328)
+.+.+|+++++.....||.+.. ..+.+|++.++.+. ..||.
T Consensus 109 ---------s~~~~I~~N~i~~~~~GI~l~~-----s~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 109 ---------SSNNTISNNTISNNGYGIYLSS-----SSNNTITGNTISNNTDYGIY 150 (236)
T ss_pred ---------CCceEEECcEEeCCCEEEEEEe-----CCCCEEECeEEeCCCccceE
Confidence 4556666666665566666643 15566666666665 56666
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.27 E-value=4.3e-05 Score=68.95 Aligned_cols=135 Identities=29% Similarity=0.172 Sum_probs=110.2
Q ss_pred EEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 020257 62 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 141 (328)
Q Consensus 62 ~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~ 141 (328)
-|.+.++++..|++.++.+.. .++.+..+.+++|++.+|... ..||++..+++++|+++.+.....+|.+..
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-- 86 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-- 86 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc--
Confidence 378888999999999997644 577899999999999999984 589999999999999999999888998876
Q ss_pred cccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEccc
Q 020257 142 DEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 142 ~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~ 221 (328)
+.+.+|+++++.....||.+.. ..+.+|++.++.+...||.+... .+.++++-++.+.
T Consensus 87 ----------s~~~~I~~N~i~~n~~GI~l~~-----s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n 144 (236)
T PF05048_consen 87 ----------SSNNTISNNTISNNGYGIYLYG-----SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNN 144 (236)
T ss_pred ----------CCCcEEECCEecCCCceEEEee-----CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCC
Confidence 4556999999988777888753 45678999999887889998653 4566666667666
Q ss_pred -CeeEE
Q 020257 222 -RKGIK 226 (328)
Q Consensus 222 -~~~i~ 226 (328)
..+|.
T Consensus 145 ~~~Gi~ 150 (236)
T PF05048_consen 145 TDYGIY 150 (236)
T ss_pred CccceE
Confidence 66776
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=1.7e-05 Score=72.65 Aligned_cols=120 Identities=25% Similarity=0.197 Sum_probs=93.5
Q ss_pred EEEEEeecceEEEeEEEe-CCCCcEEEeeeeEeEEEEeEEEEcCC-CCCCCCeecc-cCCccEEEEeeEEecC-------
Q 020257 62 LIEFMNSRSIIISNVIFQ-NSPFWNIHPVYCSNVVIRYVTILAPA-DSPNTDGIDP-DSSSNVCIEDSYISTG------- 131 (328)
Q Consensus 62 ~i~~~~~~nv~i~gi~i~-n~~~~~i~i~~s~nv~I~~v~I~~~~-~~~n~DGidi-~~s~nV~I~n~~i~~~------- 131 (328)
.+.+.-|.|.+|.|+.-. ---.|.|.+.+..||.|+|++|.... +-++-|+|.+ ..++||+|++|++..+
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 377888889999887531 11358999999999999999999754 1233488999 7899999999999873
Q ss_pred --CceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeeccc----CCEEeEEEEceEEecc
Q 020257 132 --DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNV 192 (328)
Q Consensus 132 --DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~----g~i~nI~v~n~~~~~~ 192 (328)
|..+.||- .+..|+|++|.|...+-++-+|+... .+-.+|+++++.+.+.
T Consensus 174 h~DGl~Dik~-----------~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 174 HGDGLVDIKK-----------DANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCCccEEecc-----------CCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 44445544 58999999999998888999997542 4567899999988874
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=0.00014 Score=66.73 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=100.5
Q ss_pred eEEEeccEeeEEEeCC--eEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCC-----CcEEEe-eeeE
Q 020257 21 DFLISKFEKISFIGEN--GTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSP-----FWNIHP-VYCS 92 (328)
Q Consensus 21 li~~~~~~nv~I~G~~--G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~-----~~~i~i-~~s~ 92 (328)
++.++.+.|++|.|.+ ++|-|-| |.+....||.|++|+|+..+ ...|.+ .+++
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~g-------------------l~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~ 154 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGG-------------------LKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGH 154 (345)
T ss_pred eEEEeeccccEEEeeccccEEEece-------------------EEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCe
Confidence 4888899999999982 3555433 66777899999999998766 467888 7899
Q ss_pred eEEEEeEEEEcCCC---CCCCCe-eccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCC--
Q 020257 93 NVVIRYVTILAPAD---SPNTDG-IDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-- 165 (328)
Q Consensus 93 nv~I~~v~I~~~~~---~~n~DG-idi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-- 165 (328)
|+.|+++++..+.. .-..|| +|+. .+.+|+|.++.+...|-..-+++...++ ...+-.+|++.+++|.+.
T Consensus 155 nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~---~~~~~~kvT~hhNyFkn~~q 231 (345)
T COG3866 155 NIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN---YDDGKYKVTIHHNYFKNLYQ 231 (345)
T ss_pred EEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc---ccCCceeEEEeccccccccc
Confidence 99999999998542 112344 3442 5899999999999988777676632111 112357899999998764
Q ss_pred -CceeEEeecccCCEEeEEEEceEEec
Q 020257 166 -FSGIAVGSETSGGVENVLAEHINLYN 191 (328)
Q Consensus 166 -~~gi~igS~~~g~i~nI~v~n~~~~~ 191 (328)
.-.+++|. +++.|.....
T Consensus 232 R~PriRfG~--------vHvyNNYy~~ 250 (345)
T COG3866 232 RGPRIRFGM--------VHVYNNYYEG 250 (345)
T ss_pred cCCceEeeE--------EEEecccccc
Confidence 33566664 4666666653
No 32
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.17 E-value=2.4e-05 Score=69.05 Aligned_cols=97 Identities=30% Similarity=0.341 Sum_probs=67.2
Q ss_pred cEEEee-eeEeEEEEeEEEEcC-----------CCCCCCCeecccCCccEEEEeeEEecC---------CceEEEccCcc
Q 020257 84 WNIHPV-YCSNVVIRYVTILAP-----------ADSPNTDGIDPDSSSNVCIEDSYISTG---------DDLVAVKSGWD 142 (328)
Q Consensus 84 ~~i~i~-~s~nv~I~~v~I~~~-----------~~~~n~DGidi~~s~nV~I~n~~i~~~---------DD~iaiks~~~ 142 (328)
+++.+. .++||.|+|++|... .+....|++.+..++||.|++|.+..+ |..+.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~--- 113 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKK--- 113 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEES---
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEe---
Confidence 355555 778888888888861 123457899998899999999999876 44456654
Q ss_pred ccCcccCCCcccEEEEeEEEeCCCceeEEeecc----cCCEEeEEEEceEEecc
Q 020257 143 EYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNV 192 (328)
Q Consensus 143 ~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~----~g~i~nI~v~n~~~~~~ 192 (328)
.+.+|+|++|.|.....+..+|+.. ... .+|++.++.+.++
T Consensus 114 --------~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 114 --------GSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp --------STEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred --------CCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 4899999999998876777788752 224 8899999888764
No 33
>smart00656 Amb_all Amb_all domain.
Probab=98.01 E-value=0.00032 Score=61.44 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=86.6
Q ss_pred EEEEeecceEEEeEEEeCCCC------cEEEeeeeEeEEEEeEEEEcCCC----CCCCCee-ccc-CCccEEEEeeEEec
Q 020257 63 IEFMNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPAD----SPNTDGI-DPD-SSSNVCIEDSYIST 130 (328)
Q Consensus 63 i~~~~~~nv~i~gi~i~n~~~------~~i~i~~s~nv~I~~v~I~~~~~----~~n~DGi-di~-~s~nV~I~n~~i~~ 130 (328)
|.+..++||.|++|++++... .+|.+..+++|.|++|++..... ..-.||. ++. .+.+|+|.+|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 677779999999999998643 68999999999999999998510 1113553 443 58999999999988
Q ss_pred CCceEEEccCccccCcccCCCcccEEEEeEEEeCC-CceeEEeecccCCEEeEEEEceEEeccc-eeEEE
Q 020257 131 GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYNVG-VGIHV 198 (328)
Q Consensus 131 ~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi~igS~~~g~i~nI~v~n~~~~~~~-~gi~I 198 (328)
.+-+.-++++.... .....+|++.++.+... .+.-++. .+ .+++.|..+.+.. .++..
T Consensus 114 h~~~~liG~~d~~~----~~~~~~vT~h~N~~~~~~~R~P~~r----~g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 114 HWKVMLLGHSDSDT----DDGKMRVTIAHNYFGNLRQRAPRVR----FG--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred CCEEEEEccCCCcc----ccccceEEEECcEEcCcccCCCccc----CC--EEEEEeeEEeCcccEeEec
Confidence 77777676642110 00135799999988653 3333332 12 6788888887754 44333
No 34
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.92 E-value=0.00074 Score=59.65 Aligned_cols=122 Identities=23% Similarity=0.278 Sum_probs=74.2
Q ss_pred EEeEEEeCCC------CcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCc
Q 020257 73 ISNVIFQNSP------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI 146 (328)
Q Consensus 73 i~gi~i~n~~------~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~ 146 (328)
|+++++.... .-.+++..++++.|++|++.+. +.+|+.+..++...+.+..... .+.+..
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~------- 161 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDN------- 161 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEES-------
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeecc-------
Confidence 6666664332 1346666777777777777763 2355655544444443332221 122222
Q ss_pred ccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEec-cceeEEEEEecCCCceEEEEEEEeEEEcccCeeE
Q 020257 147 AYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYN-VGVGIHVKTNIGRGGFIRNITVSDVYMENARKGI 225 (328)
Q Consensus 147 ~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~-~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i 225 (328)
...++.+.||.+.+...|+..++ .+++++||.+.. ...||.+... .++.++|++++++..+|
T Consensus 162 ----~~~~~~~~~~~~~~~~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 162 ----GSNNVIVNNCIFNGGDNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ----CEEEEEEECEEEESSSCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred ----ceeEEEECCccccCCCceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 14667778888887777754443 789999999887 6688888754 23777888888777664
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.66 E-value=0.001 Score=58.83 Aligned_cols=111 Identities=28% Similarity=0.255 Sum_probs=78.4
Q ss_pred CeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEc
Q 020257 60 PNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVK 138 (328)
Q Consensus 60 p~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaik 138 (328)
...+++..++++.|+++++.+.....+.+..++...+.+..... ++.+. ++.++.+.++.+..+++++...
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 183 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG 183 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee
Confidence 35788888999999999999988777887765555554332221 12222 2467888999999998884221
Q ss_pred cCccccCcccCCCcccEEEEeEEEeC-CCceeEEeecccCCEEeEEEEceEEeccceeE
Q 020257 139 SGWDEYGIAYGHPSSGITIRRVTGSS-PFSGIAVGSETSGGVENVLAEHINLYNVGVGI 196 (328)
Q Consensus 139 s~~~~~g~~~~~~~~nV~I~nc~~~~-~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi 196 (328)
.++++|+||++.. ...||.+-.. .+++++|+++.+...||
T Consensus 184 -------------~~~~~i~n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 184 -------------NNNITISNNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp -------------EEEEEEECEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred -------------cceEEEEeEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 4799999999987 5889988754 33777777777776665
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.23 E-value=0.0021 Score=56.69 Aligned_cols=124 Identities=23% Similarity=0.152 Sum_probs=76.0
Q ss_pred EeecceEEEeEEEeC---------------CCCcEEEeeeeEeEEEEeEEEEcCCC---CCCCCe-eccc-CCccEEEEe
Q 020257 66 MNSRSIIISNVIFQN---------------SPFWNIHPVYCSNVVIRYVTILAPAD---SPNTDG-IDPD-SSSNVCIED 125 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n---------------~~~~~i~i~~s~nv~I~~v~I~~~~~---~~n~DG-idi~-~s~nV~I~n 125 (328)
.+++||.|++|+|++ ....++.+..++||.|++|++..... ....|| +|+. .+++|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 589999999999998 23457999999999999999998621 011354 5653 589999999
Q ss_pred eEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCC-CceeEEeecccCCEEeEEEEceEEec-cceeEEEE
Q 020257 126 SYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYN-VGVGIHVK 199 (328)
Q Consensus 126 ~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi~igS~~~g~i~nI~v~n~~~~~-~~~gi~I~ 199 (328)
|.|...+.+..+++... . ..... .+|++.++.+... .+.=++. . -.+++-|..+.+ ...++...
T Consensus 123 n~f~~~~k~~l~G~~d~-~--~~~~~-~~vT~hhN~f~~~~~R~P~~r----~--G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDS-N--STDRG-LRVTFHHNYFANTNSRNPRVR----F--GYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTT-C--GGGTT-EEEEEES-EEEEEEE-TTEEC----S--CEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCC-c--cccCC-ceEEEEeEEECchhhCCCccc----c--cEEEEEEeeeECCCCEEEEcc
Confidence 99998766655555211 1 11223 8999999888643 1111221 1 247777776655 33454443
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.23 Score=46.75 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=58.1
Q ss_pred EEEEEeecceEEEeEEEeCCC-----------------------------CcEEEeeeeEeEEEEeEEEEcCCC---CCC
Q 020257 62 LIEFMNSRSIIISNVIFQNSP-----------------------------FWNIHPVYCSNVVIRYVTILAPAD---SPN 109 (328)
Q Consensus 62 ~i~~~~~~nv~i~gi~i~n~~-----------------------------~~~i~i~~s~nv~I~~v~I~~~~~---~~n 109 (328)
.+.+. ..++.|+|++++++. .++|.+..+.++.|+..+|....+ ..-
T Consensus 71 ~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~r 149 (408)
T COG3420 71 YVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAER 149 (408)
T ss_pred EEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccchhhc
Confidence 45544 688888888888542 235778888889999988887544 233
Q ss_pred CCeecccCCccEEEEeeEEecCCceEEEcc
Q 020257 110 TDGIDPDSSSNVCIEDSYISTGDDLVAVKS 139 (328)
Q Consensus 110 ~DGidi~~s~nV~I~n~~i~~~DD~iaiks 139 (328)
..||.+..++++.|..-.|.-+.|||-.+.
T Consensus 150 GnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 150 GNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred cCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 578999889999999999988889886654
No 38
>PLN02480 Probable pectinesterase
Probab=95.11 E-value=1.9 Score=41.29 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=9.8
Q ss_pred ecceEEEeEEEeCC
Q 020257 68 SRSIIISNVIFQNS 81 (328)
Q Consensus 68 ~~nv~i~gi~i~n~ 81 (328)
.+++.+++|+|+|.
T Consensus 131 a~~f~a~nLTf~Nt 144 (343)
T PLN02480 131 APHFVAFGISIRND 144 (343)
T ss_pred CCCEEEEeeEEEec
Confidence 56777777777765
No 39
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.09 E-value=3 Score=37.95 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=33.4
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
...+.+|++++|.++.. .-.-|+.+.++ +.+|+||+|.. ..++|.+... . ......+++|++..+.....|
T Consensus 95 ~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~-~-----~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 95 LANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGT-S-----ANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred ecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEee-e-----cCCcccceEeecceEEecCcC
Confidence 34455555666655410 01234555433 55555555544 2334433211 0 001245555555555544555
Q ss_pred eEEe
Q 020257 169 IAVG 172 (328)
Q Consensus 169 i~ig 172 (328)
|++-
T Consensus 167 i~i~ 170 (246)
T PF07602_consen 167 ISIS 170 (246)
T ss_pred eEEE
Confidence 5554
No 40
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=92.87 E-value=1.6 Score=41.29 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=59.8
Q ss_pred eEEEeccEeeEEEeCCeEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEE
Q 020257 21 DFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVT 100 (328)
Q Consensus 21 li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~ 100 (328)
=|++.+..++.|.|. +|.|.... ....|..-|++.++++..|.+=.+.. ..++|..+.|++-.+++-+
T Consensus 122 Gi~l~~s~d~~i~~n--~i~G~~~~---------r~~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr 189 (408)
T COG3420 122 GIYLHGSADVRIEGN--TIQGLADL---------RVAERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNR 189 (408)
T ss_pred EEEEeccCceEEEee--EEeecccc---------chhhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccc
Confidence 455566666666664 55443210 01233445666666666665544421 2235555555555555544
Q ss_pred EEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCC-CceeEEe
Q 020257 101 ILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVG 172 (328)
Q Consensus 101 I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi~ig 172 (328)
+.--. -|.|.+.+.+..|++...+..--++++- -+++++|+|..-++. ++||-+-
T Consensus 190 ~~~~R-----ygvHyM~t~~s~i~dn~s~~N~vG~ALM------------ys~~l~V~~nrS~Gnrd~Gilln 245 (408)
T COG3420 190 FRDLR-----YGVHYMYTNDSRISDNSSRDNRVGYALM------------YSDRLKVSDNRSSGNRDHGILLN 245 (408)
T ss_pred hhhee-----eeEEEEeccCcEeecccccCCcceEEEE------------EeccEEEEcCcccCccccceeee
Confidence 43321 2445555555555555544443344432 145555655555444 5555443
No 41
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.64 E-value=4.7 Score=39.02 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=59.1
Q ss_pred ecceEEEeEEEeCCC-CcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCc
Q 020257 68 SRSIIISNVIFQNSP-FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI 146 (328)
Q Consensus 68 ~~nv~i~gi~i~n~~-~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~ 146 (328)
-.+|++.++.+...+ .-.+.+....++++.++.+.+.. |.-+..-....|++|.|..---+|. +
T Consensus 120 M~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~--~------- 184 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCTFYGCWKGIV--S------- 184 (386)
T ss_pred eeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeEEEEEEEEee--c-------
Confidence 345677777776655 55666777777888888877642 2333334677788888766443332 1
Q ss_pred ccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEce
Q 020257 147 AYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHI 187 (328)
Q Consensus 147 ~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~ 187 (328)
.+...+.|++|+|.. .-|.|-+++...+++=.+.||
T Consensus 185 ---~~~~~lsVk~C~Fek--C~igi~s~G~~~i~hn~~~ec 220 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEK--CVIGIVSEGPARIRHNCASEC 220 (386)
T ss_pred ---CCcceEEeeheeeeh--eEEEEEecCCeEEecceeccc
Confidence 135677778888743 445555544444444444444
No 42
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=91.39 E-value=3.5 Score=38.21 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=30.1
Q ss_pred ecceEEEeEEEeCC-CCcEEEeee-----eEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEec
Q 020257 68 SRSIIISNVIFQNS-PFWNIHPVY-----CSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 130 (328)
Q Consensus 68 ~~nv~i~gi~i~n~-~~~~i~i~~-----s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~ 130 (328)
-++..|+|+.+..- |--.|.+-. -+|++|+++++....++--..|+|-. -..+.|.||.|..
T Consensus 121 gsdc~ikgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~ 188 (464)
T PRK10123 121 GSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSD 188 (464)
T ss_pred cCceEEeeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeecccccc
Confidence 34556666665321 111233222 24566666666543332222344432 4567777777754
No 43
>PLN02773 pectinesterase
Probab=90.70 E-value=7.3 Score=36.89 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=34.0
Q ss_pred EeecceEEEeEEEeCCCC------cEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCce
Q 020257 66 MNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDL 134 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~------~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~ 134 (328)
..++++.+++|+|+|... -.|.+ .++.+.+.+|+|.... |-+-.. .-...++||+|...=|=
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~Q-----DTL~~~-~gr~yf~~c~IeG~VDF 166 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQ-----DTLYLH-YGKQYLRDCYIEGSVDF 166 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeeccc-----ceeEeC-CCCEEEEeeEEeecccE
Confidence 357788888888887632 12322 2566666666666543 222221 23456666666654343
No 44
>PLN02773 pectinesterase
Probab=90.15 E-value=8.1 Score=36.57 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=73.8
Q ss_pred EeeeeEeEEEEeEEEEcCCCCCC--CCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeC
Q 020257 87 HPVYCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS 164 (328)
Q Consensus 87 ~i~~s~nv~I~~v~I~~~~~~~n--~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~ 164 (328)
....++++.++||+|.|...... +-.+.+ .++.+.+.||.|...-|-+-.+. ..-.++||++.+
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG 162 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEG 162 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEee
Confidence 34457899999999999743211 222333 47999999999998888776543 346788999987
Q ss_pred CCceeEEeecccCCEEeEEEEceEEeccceeEEEEEecCC-CceEEEEEEEeEEEcccC
Q 020257 165 PFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGR-GGFIRNITVSDVYMENAR 222 (328)
Q Consensus 165 ~~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~-~g~i~nI~f~nI~i~~~~ 222 (328)
+-+ +-+|. -...|++|++.....| .|...... ...-....|.|+++....
T Consensus 163 ~VD-FIFG~------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 163 SVD-FIFGN------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ccc-EEeec------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 532 44553 3578999999765444 34322111 112235789999998753
No 45
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.51 E-value=9.5 Score=37.46 Aligned_cols=132 Identities=16% Similarity=0.108 Sum_probs=51.0
Q ss_pred EEEEeecceEEEeEEEeCC--CC-cEEEe------eeeEeEEEEeEEEEcCCCCCCCC--eecc----cCCccEEEEeeE
Q 020257 63 IEFMNSRSIIISNVIFQNS--PF-WNIHP------VYCSNVVIRYVTILAPADSPNTD--GIDP----DSSSNVCIEDSY 127 (328)
Q Consensus 63 i~~~~~~nv~i~gi~i~n~--~~-~~i~i------~~s~nv~I~~v~I~~~~~~~n~D--Gidi----~~s~nV~I~n~~ 127 (328)
|.+. .+.+.|+||.|++. |. -.+.+ ..+.+.++.++.|..-.. +..+ ..-+ ...++=+|++|.
T Consensus 62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~ 139 (425)
T PF14592_consen 62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNY 139 (425)
T ss_dssp EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-E
T ss_pred EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccE
Confidence 4444 57889999999863 21 11222 146788888888886321 1111 1112 357888999999
Q ss_pred EecC---CceEEEccCccccCcccCCCcccEEEEeEEEeC-------CCceeEEeec-ccCCEEeEEEEceEEeccc---
Q 020257 128 ISTG---DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS-------PFSGIAVGSE-TSGGVENVLAEHINLYNVG--- 193 (328)
Q Consensus 128 i~~~---DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~-------~~~gi~igS~-~~g~i~nI~v~n~~~~~~~--- 193 (328)
|... .--+.+... .+|. ......-+|++++|.. ++-.|+||.- .+-.-++.+|++..|..+.
T Consensus 140 F~gK~~~G~~l~V~~~--~~~~--~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~ 215 (425)
T PF14592_consen 140 FQGKTNRGPTLAVRVI--LNGS--QSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGEV 215 (425)
T ss_dssp EE---SSS-SEEE--S----SS---------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SSS
T ss_pred eeccccCCcEEEEEec--ccCc--cccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCce
Confidence 9763 122222210 0010 0123455788888862 2567888853 2223466666666666543
Q ss_pred eeEEEEE
Q 020257 194 VGIHVKT 200 (328)
Q Consensus 194 ~gi~I~s 200 (328)
.-|++||
T Consensus 216 EIISvKS 222 (425)
T PF14592_consen 216 EIISVKS 222 (425)
T ss_dssp EEEEEES
T ss_pred eEEEeec
Confidence 3555565
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=89.33 E-value=28 Score=35.65 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=19.0
Q ss_pred eecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEc
Q 020257 67 NSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILA 103 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~ 103 (328)
..+++..++|+|+|... -.+-+. .++.+.+.+|+|..
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G 369 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLG 369 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeee
Confidence 35677777777776532 111111 24455555555554
No 47
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.16 E-value=2.5 Score=39.20 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=34.4
Q ss_pred cccEEEEeEEEeCCCceeEEeecc-cC----CEEeEEEEceEEecc-----ceeEEEEEecCCCceEEEEEEEeEEEccc
Q 020257 152 SSGITIRRVTGSSPFSGIAVGSET-SG----GVENVLAEHINLYNV-----GVGIHVKTNIGRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 152 ~~nV~I~nc~~~~~~~gi~igS~~-~g----~i~nI~v~n~~~~~~-----~~gi~I~s~~g~~g~i~nI~f~nI~i~~~ 221 (328)
|.|..|+|..+.+ ..|+-||..- +| .-.|....|+.+.++ -.||.|.+ +...+=|-+.|+.|+.+
T Consensus 300 cdnfvidni~mvn-sagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqiss----gnatsfvaitn~~mkra 374 (464)
T PRK10123 300 CDNFVIDNIEMIN-SAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISA----GNAVSFVALTNIEMKRA 374 (464)
T ss_pred ccceEEecccccc-ccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEecc----CCcceEEEEeeeehhhh
Confidence 7788888887766 5677777531 11 123444444444443 35666654 22233444555555543
No 48
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=88.46 E-value=18 Score=32.29 Aligned_cols=61 Identities=18% Similarity=0.065 Sum_probs=32.9
Q ss_pred cceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCc-cEEEEeeEEecCCceE
Q 020257 69 RSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS-NVCIEDSYISTGDDLV 135 (328)
Q Consensus 69 ~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~-nV~I~n~~i~~~DD~i 135 (328)
+..+|+++.|-.+....||... +-+|+||....= -.|++.+.... .++|.+.-.+..+|=|
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV 122 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKV 122 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccE
Confidence 4567777777555556666665 455666655431 23555554444 5566666555554443
No 49
>PLN02480 Probable pectinesterase
Probab=86.63 E-value=14 Score=35.33 Aligned_cols=135 Identities=4% Similarity=-0.040 Sum_probs=78.3
Q ss_pred eeEeEEEEeEEEEcCCCC-----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEe
Q 020257 90 YCSNVVIRYVTILAPADS-----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 163 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~-----~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~ 163 (328)
..++++++||+|.|.... ...-++.+ ..++++.+.||.|...-|-+-... ..-.++||++.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~C~Ie 196 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYHSCYIQ 196 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEEeCEEE
Confidence 467899999999986310 11223444 357899999999988777764332 33577888887
Q ss_pred CCCceeEEeecccCCEEeEEEEceEEeccce-----eEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCC
Q 020257 164 SPFSGIAVGSETSGGVENVLAEHINLYNVGV-----GIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDK 238 (328)
Q Consensus 164 ~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~-----gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~ 238 (328)
+.-+ +-+|. -...|+||++..... .=.|.........-....|.|+++..... .|...|
T Consensus 197 G~VD-FIFG~------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g~------~yLGRP--- 260 (343)
T PLN02480 197 GSID-FIFGR------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIGE------VYLGRA--- 260 (343)
T ss_pred eeee-EEccc------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccCc------eeeecC---
Confidence 6522 33442 366899998875321 11233221111223467888988876421 232222
Q ss_pred CCCCCCCcEEEEEEEEEEEe
Q 020257 239 FNPNALPVVNGITIKDVWGT 258 (328)
Q Consensus 239 ~~~~~~~~i~nIt~~nI~~~ 258 (328)
. .....+.|.+-.+.
T Consensus 261 ----W-~~ya~vVf~~t~l~ 275 (343)
T PLN02480 261 ----K-GAYSRVIFAKTYLS 275 (343)
T ss_pred ----C-CCcceEEEEecccC
Confidence 1 13566777766664
No 50
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=83.74 E-value=11 Score=34.36 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCccEEEEeeEEecCCc----eEEEccCccccCcccCCCcccEEEEeEEEeCC-CceeEEeec-ccCCEEeEEEEceEEe
Q 020257 117 SSSNVCIEDSYISTGDD----LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSE-TSGGVENVLAEHINLY 190 (328)
Q Consensus 117 ~s~nV~I~n~~i~~~DD----~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi~igS~-~~g~i~nI~v~n~~~~ 190 (328)
...+..|+..+|.+... +|-+. +.+.+|+||+|... ..||.+-.. ....+.++.|+...+.
T Consensus 95 ~~~~~~i~GvtItN~n~~~g~Gi~Ie-------------ss~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~ 161 (246)
T PF07602_consen 95 LANNATISGVTITNPNIARGTGIWIE-------------SSSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIY 161 (246)
T ss_pred ecCCCEEEEEEEEcCCCCcceEEEEe-------------cCCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEE
Confidence 34566777777776632 44443 35889999999874 678877443 2567899999999999
Q ss_pred ccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEE
Q 020257 191 NVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIA 228 (328)
Q Consensus 191 ~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~ 228 (328)
....||.+.... .+ +.| .++|-.+++-..+|.+.
T Consensus 162 ~~~~Gi~i~~~~--~~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 162 FNKTGISISDNA--AP-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred ecCcCeEEEccc--CC-ccc-eeeccEEEeCCcCeEee
Confidence 888899987542 23 222 33555555544466544
No 51
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=83.72 E-value=32 Score=30.70 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=69.8
Q ss_pred EeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEec-CCceEEEccCccccCcccCCCcccEEEEeEEEeCC-Ccee
Q 020257 92 SNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGI 169 (328)
Q Consensus 92 ~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~-~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~-~~gi 169 (328)
+..+++|+.|-.+ ..||||... +-+|+|+.... +.|++.+|.. ...++|.+.-..+. +--|
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~ 123 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVF 123 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEE
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEE
Confidence 5678888888543 469999875 78899998865 7899999974 22556655544432 2222
Q ss_pred EEeecccCCEEeEEEEceEEeccceeEEEEEecC---CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCc
Q 020257 170 AVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG---RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPV 246 (328)
Q Consensus 170 ~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g---~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~~~~~~~~ 246 (328)
..-. --.+.|+|.++.+ .|-...|-.. .++.=|+|.+++..+.....-+-|..+|+. ...
T Consensus 124 Q~Ng-----~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~at 186 (215)
T PF03211_consen 124 QHNG-----GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TAT 186 (215)
T ss_dssp EE-S-----SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEE
T ss_pred EecC-----ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEE
Confidence 2221 1245555544433 3434444311 113446677776655443333445555532 236
Q ss_pred EEEEEEEE
Q 020257 247 VNGITIKD 254 (328)
Q Consensus 247 i~nIt~~n 254 (328)
|+++.++.
T Consensus 187 i~~~~~~~ 194 (215)
T PF03211_consen 187 ISNSCIKG 194 (215)
T ss_dssp EEEEEEEE
T ss_pred EEEEEecC
Confidence 77776665
No 52
>PLN02671 pectinesterase
Probab=83.12 E-value=46 Score=32.11 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=10.7
Q ss_pred EeecceEEEeEEEeCC
Q 020257 66 MNSRSIIISNVIFQNS 81 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~ 81 (328)
...+++..++|+|+|.
T Consensus 151 v~a~~F~a~nitfeNt 166 (359)
T PLN02671 151 IESDYFCATGITFENT 166 (359)
T ss_pred EECCceEEEeeEEEcC
Confidence 3456777777777775
No 53
>PLN02682 pectinesterase family protein
Probab=82.72 E-value=48 Score=32.08 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=10.9
Q ss_pred EeecceEEEeEEEeCC
Q 020257 66 MNSRSIIISNVIFQNS 81 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~ 81 (328)
...+++..++|+|+|.
T Consensus 160 v~a~~F~a~nlTf~Nt 175 (369)
T PLN02682 160 VNSPYFIAKNITFKNT 175 (369)
T ss_pred EECCCeEEEeeEEEcc
Confidence 3466777777777775
No 54
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=82.31 E-value=65 Score=33.31 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=43.6
Q ss_pred eecceEEEeEEEeCCCC----cEEEe-eeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 020257 67 NSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 141 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~----~~i~i-~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~ 141 (328)
..+++..++|+|+|... -.+-+ ..++...+.+|+|....| -+-.. ...-..++|+|...=|=| ++
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG--- 439 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD-----TLYAQ-THRQFYRSCVITGTIDFI-FG--- 439 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc-----ccccC-CCcEEEEeeEEEeeccEE-ec---
Confidence 56788888888887532 12222 236667777777776432 22222 334567777776554432 22
Q ss_pred cccCcccCCCcccEEEEeEEEeC
Q 020257 142 DEYGIAYGHPSSGITIRRVTGSS 164 (328)
Q Consensus 142 ~~~g~~~~~~~~nV~I~nc~~~~ 164 (328)
.-...++||.+..
T Consensus 440 ----------~a~avf~~C~i~~ 452 (596)
T PLN02745 440 ----------DAAAIFQNCLIFV 452 (596)
T ss_pred ----------ceeEEEEecEEEE
Confidence 2446666776654
No 55
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=81.48 E-value=2.1 Score=27.59 Aligned_cols=37 Identities=22% Similarity=0.067 Sum_probs=16.9
Q ss_pred EeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEE
Q 020257 87 HPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI 128 (328)
Q Consensus 87 ~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i 128 (328)
.+..|.+.+|++-++... .|||.+..+.+-+|++..+
T Consensus 3 ~l~~s~~~~i~~N~i~~~-----~~GI~~~~s~~n~i~~N~~ 39 (44)
T TIGR03804 3 YLESSSNNTLENNTASNN-----SYGIYLTDSSNNTLSNNTA 39 (44)
T ss_pred EEEecCCCEEECcEEeCC-----CCEEEEEeCCCCEeECCEE
Confidence 344444444555444442 2455554444444444444
No 56
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=81.03 E-value=7.2 Score=37.75 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=60.4
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
+.+=.+|++.|+++...+ ..-|+-+.+..++++.+|.|..-. +.++.+ .....|+.|+|.+-..
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~------------~~~~~VrGC~F~~C~~ 180 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFH-GTCLES------------WAGGEVRGCTFYGCWK 180 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCc-ceeEEE------------cCCcEEeeeEEEEEEE
Confidence 334468999999998854 134677778999999999998753 345554 3557899999976555
Q ss_pred eeEEeecccCCEEeEEEEceEEeccceeE
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVGVGI 196 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~~gi 196 (328)
||.- .+...+.|++|.+....-||
T Consensus 181 gi~~-----~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 181 GIVS-----RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred Eeec-----CCcceEEeeheeeeheEEEE
Confidence 5543 24566667777776654344
No 57
>PLN02634 probable pectinesterase
Probab=80.55 E-value=57 Score=31.47 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=9.5
Q ss_pred ecceEEEeEEEeCC
Q 020257 68 SRSIIISNVIFQNS 81 (328)
Q Consensus 68 ~~nv~i~gi~i~n~ 81 (328)
.+++..++|+|+|.
T Consensus 148 a~~F~a~niTf~Nt 161 (359)
T PLN02634 148 ANYFTARNISFKNT 161 (359)
T ss_pred CCCeEEEeCeEEeC
Confidence 56677777777765
No 58
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=80.19 E-value=2.8 Score=27.02 Aligned_cols=40 Identities=33% Similarity=0.275 Sum_probs=26.3
Q ss_pred eecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEe
Q 020257 112 GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 163 (328)
Q Consensus 112 Gidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~ 163 (328)
||.+..+.+.+|++..+....|+|.+.. +.+-+|++.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~------------s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD------------SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe------------CCCCEeECCEEE
Confidence 4666667777788877777767777754 455555555554
No 59
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=79.27 E-value=60 Score=33.14 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=35.4
Q ss_pred eEEEEEeecceEEEeEEEeCCCCc------EEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 61 NLIEFMNSRSIIISNVIFQNSPFW------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 61 ~~i~~~~~~nv~i~gi~i~n~~~~------~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
..+.+ ..+++..++|+|+|.... .+.+ .++.+.+.+|+|....| -+-.. +..-..++|+|...=|
T Consensus 310 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVD 380 (541)
T PLN02416 310 ATLAV-SGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQD-----TLYVH-SFRQFYRECDIYGTID 380 (541)
T ss_pred EEEEE-ECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccc-----hhccC-CCceEEEeeEEeeccc
Confidence 33444 367788888888876432 2222 35666677777666432 22221 3445666666665434
No 60
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=79.27 E-value=17 Score=34.17 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=49.9
Q ss_pred eecceEEEeEEEeCCCC------cEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 020257 67 NSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 140 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~------~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~ 140 (328)
..+++.+++|+|.|... -.|.+ .++.+.+.+|+|.... |-+-.. ..+..++||.|...-|=| ++.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~vDFI-fG~- 155 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNVDFI-FGN- 155 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESEEEE-EES-
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecCcEE-ECC-
Confidence 47888899999888532 12333 3466777777777643 333332 345667777777654543 222
Q ss_pred ccccCcccCCCcccEEEEeEEEeCCC------ceeEEee-cccCCEEeEEEEceEEecc
Q 020257 141 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNV 192 (328)
Q Consensus 141 ~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS-~~~g~i~nI~v~n~~~~~~ 192 (328)
-...++||.+.... ..|.--+ .....-.-.+|.||++...
T Consensus 156 ------------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 156 ------------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp ------------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred ------------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 23466677765421 1111111 1112345667777777653
No 61
>PLN02916 pectinesterase family protein
Probab=77.89 E-value=83 Score=31.82 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=19.2
Q ss_pred eecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcC
Q 020257 67 NSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAP 104 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~ 104 (328)
..+++..++|+|+|... -.+-+. .++...+.+|+|...
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~ 317 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY 317 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc
Confidence 35667777777776532 111111 245555555555553
No 62
>PLN02682 pectinesterase family protein
Probab=77.87 E-value=54 Score=31.76 Aligned_cols=138 Identities=7% Similarity=-0.056 Sum_probs=80.8
Q ss_pred eeeeEeEEEEeEEEEcCCCC-----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEE
Q 020257 88 PVYCSNVVIRYVTILAPADS-----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVT 161 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~-----~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~ 161 (328)
....+++..+|++|.|.... ...-.+.+ ..++++.+.||.|...-|-+-... ..-.++||+
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~ 225 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCY 225 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC-------------CCEEEEeeE
Confidence 34567899999999986421 01112222 247899999999988877765443 345788999
Q ss_pred EeCCCceeEEeecccCCEEeEEEEceEEeccce-eEEEEEecC-CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCC
Q 020257 162 GSSPFSGIAVGSETSGGVENVLAEHINLYNVGV-GIHVKTNIG-RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKF 239 (328)
Q Consensus 162 ~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~-gi~I~s~~g-~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~~~~~~ 239 (328)
+.++-+ +-+|. -...|++|++..... .-.|..... ....-....|.|+++..... .|.+.|
T Consensus 226 IeG~VD-FIFG~------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g~------~yLGRp---- 288 (369)
T PLN02682 226 IEGSVD-FIFGN------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSGA------LYLGRA---- 288 (369)
T ss_pred Eccccc-EEecC------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCCc------eEeecC----
Confidence 977522 33443 467899998875321 113332211 11223577889999986421 233222
Q ss_pred CCCCCCcEEEEEEEEEEEee
Q 020257 240 NPNALPVVNGITIKDVWGTK 259 (328)
Q Consensus 240 ~~~~~~~i~nIt~~nI~~~~ 259 (328)
- .+...+.|.|-.+..
T Consensus 289 ---W-~~yarvVf~~t~m~~ 304 (369)
T PLN02682 289 ---W-GTFSRVVFAYTYMDN 304 (369)
T ss_pred ---C-CCcceEEEEeccCCC
Confidence 1 135667777766653
No 63
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=77.81 E-value=66 Score=31.75 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=58.6
Q ss_pred eeEeEEEEeEEEEcCCCC----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeC
Q 020257 90 YCSNVVIRYVTILAPADS----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS 164 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~----~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~ 164 (328)
..+++..+|++|.|.... .+.-.+.+ ...+.+.+.+|.|...-|-+-..+.....+.. ......-.++||++.+
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~-~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLE-TDRQPRTYVKNSYIEG 282 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeecccccccccc-ccccccEEEEeCEEee
Confidence 456666666666665310 01111112 13677777777777766666543210000000 0012346677777766
Q ss_pred CCceeEEeecccCCEEeEEEEceEEeccce----eEEEEEecCCCceEEEEEEEeEEEccc
Q 020257 165 PFSGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 165 ~~~gi~igS~~~g~i~nI~v~n~~~~~~~~----gi~I~s~~g~~g~i~nI~f~nI~i~~~ 221 (328)
.-+ +-+|. -...|+||++..... .-.|.........-..+.|.|+++...
T Consensus 283 ~VD-FIFG~------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 283 DVD-FVFGR------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred ccc-EEccC------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 422 33443 355677777765321 122222111112234567777777764
No 64
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=77.42 E-value=53 Score=33.65 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=72.6
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCC
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 166 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~ 166 (328)
....+++..+|++|.|.......-.+.+ ..++.+.+.||.|...-|-+-..+ ..-.+++|++.++-
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~rq~y~~C~I~GtV 392 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS-------------LRQFYKSCRIQGNV 392 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC-------------CceEEEeeEEeecC
Confidence 3457789999999999753211222333 248899999999998877765543 23468999998762
Q ss_pred ceeEEeecccCCEEeEEEEceEEeccce--------eEEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 167 SGIAVGSETSGGVENVLAEHINLYNVGV--------GIHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 167 ~gi~igS~~~g~i~nI~v~n~~~~~~~~--------gi~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
+ +-+|. ..+.|+||++.-... .-.|.... .....-..+.|.|+++...
T Consensus 393 D-FIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 393 D-FIFGN------SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred C-EEecC------ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 2 44553 467899999974211 12333221 1223345788999999765
No 65
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=77.31 E-value=88 Score=31.83 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=32.3
Q ss_pred EeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 66 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
...+++..++|+|+|... -.+-+. .++...+.+|++.... |-+-.. ...-..++|+|...=|
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVD 376 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVD 376 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEccccc
Confidence 346778888888877632 111111 3556666666666543 222211 2344556666654433
No 66
>PLN02665 pectinesterase family protein
Probab=76.03 E-value=72 Score=30.88 Aligned_cols=113 Identities=11% Similarity=0.030 Sum_probs=57.1
Q ss_pred eeeeEeEEEEeEEEEcCCCC-------CCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeE
Q 020257 88 PVYCSNVVIRYVTILAPADS-------PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRV 160 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~-------~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc 160 (328)
...++++..+|++|.|.... .-+-.+.+ ..+.+.+.||.|...-|-+-... -.-.++||
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~-------------gr~yf~~C 215 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDK-------------GRHFFKDC 215 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccceeEeCC-------------CCEEEEee
Confidence 33466677777777765310 01112222 36777777777777666654332 23456777
Q ss_pred EEeCCCceeEEeecccCCEEeEEEEceEEecccee--EEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 161 TGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVG--IHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 161 ~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~g--i~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
++.++-+ +-+|. -...|++|++.-...+ -.|..... ....-....|.|+++...
T Consensus 216 yIeG~VD-FIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 272 (366)
T PLN02665 216 YIEGTVD-FIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGT 272 (366)
T ss_pred EEeeccc-eeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecC
Confidence 7766422 23332 2446777777643332 12222110 011223556777777664
No 67
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=75.10 E-value=71 Score=32.48 Aligned_cols=116 Identities=10% Similarity=0.070 Sum_probs=69.4
Q ss_pred EeeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCC
Q 020257 87 HPVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 165 (328)
Q Consensus 87 ~i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~ 165 (328)
.....+++..+|++|.|.......-.+.+ ..++.+.+.+|.|...-|-+-..+ ..-.+++|++.++
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~-------------~Rqyy~~C~I~Gt 374 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS-------------KRQFYRETDITGT 374 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC-------------CCEEEEeeEEccc
Confidence 34456788888898888653211122222 147888899999988777765443 2346788888775
Q ss_pred CceeEEeecccCCEEeEEEEceEEeccce---eEEEEEec-CCCceEEEEEEEeEEEcccC
Q 020257 166 FSGIAVGSETSGGVENVLAEHINLYNVGV---GIHVKTNI-GRGGFIRNITVSDVYMENAR 222 (328)
Q Consensus 166 ~~gi~igS~~~g~i~nI~v~n~~~~~~~~---gi~I~s~~-g~~g~i~nI~f~nI~i~~~~ 222 (328)
-+ +-+|. ....|+||++.-... .-.|.... .....-..+.|.|+++....
T Consensus 375 VD-FIFG~------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 375 VD-FIFGN------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred cc-eeccc------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 22 33442 457888888875321 12333221 11233357889999988653
No 68
>PLN02634 probable pectinesterase
Probab=74.90 E-value=63 Score=31.15 Aligned_cols=111 Identities=8% Similarity=0.070 Sum_probs=67.1
Q ss_pred eeEeEEEEeEEEEcCCCC-----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEe
Q 020257 90 YCSNVVIRYVTILAPADS-----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 163 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~-----~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~ 163 (328)
..+++..+|++|.|.... .+.-.+.+ ..++.+.+.+|.|...-|-+-... -.-.++||++.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~-------------gR~yf~~CyIe 213 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA-------------GRHYFKECYIE 213 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC-------------CCEEEEeeEEc
Confidence 457888889999886421 11112222 147889999999988777765433 34678888887
Q ss_pred CCCceeEEeecccCCEEeEEEEceEEecccee-EEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 164 SPFSGIAVGSETSGGVENVLAEHINLYNVGVG-IHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 164 ~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~g-i~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
++-+ +-+|. -...|+||++...... -.|... ++ ...-....|.|+++...
T Consensus 214 G~VD-FIFG~------g~a~Fe~C~I~s~~~~~g~ITA~-~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 214 GSID-FIFGN------GRSMYKDCELHSIASRFGSIAAH-GRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred cccc-EEcCC------ceEEEeccEEEEecCCCcEEEeC-CCCCCCCCcEEEEEcCEEcCC
Confidence 7522 33443 3557899988754221 123322 21 12335678999998764
No 69
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=73.73 E-value=39 Score=31.71 Aligned_cols=111 Identities=6% Similarity=0.021 Sum_probs=61.2
Q ss_pred eeEeEEEEeEEEEcCCCCC--CCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 90 YCSNVVIRYVTILAPADSP--NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~--n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
..+++.++|++|.|..... -+-++.+ .++++.+.+|.|...-|-+-..+ ....++||++.+. -
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~-v 149 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN-V 149 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-E
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-C
Confidence 4678889999998854211 1122333 46889999999998878775543 3467889999875 2
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
=+-+|. ....|+||++.-.. .+..|.... .....-..+.|.|+++...
T Consensus 150 DFIfG~------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 150 DFIFGN------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp EEEEES------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred cEEECC------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 344553 24578999887532 123443321 1123345678999998865
No 70
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=73.40 E-value=1.1e+02 Score=31.19 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=31.3
Q ss_pred EeecceEEEeEEEeCCCCc------EEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 66 MNSRSIIISNVIFQNSPFW------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~~------~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
...+++..++|+|+|.... .+.+ .++.+.+.+|+|....| -+-.. ...-..++|+|...=|
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QD-----TLy~~-~~rqyy~~C~I~GtVD 382 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQD-----TLYAH-SLRQFYRECEIYGTID 382 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccc-----cceec-CCceEEEeeEEecccc
Confidence 3467777777777776321 1222 25556666666665432 12111 2334566666654433
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=72.56 E-value=1.3e+02 Score=31.58 Aligned_cols=142 Identities=11% Similarity=0.078 Sum_probs=84.2
Q ss_pred CCeEEEEEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 59 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 59 rp~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
+-..+.+ ..+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. ..+-..++|+|...=|
T Consensus 328 ~SAT~~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVD 400 (670)
T PLN02217 328 KTATVAI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTID 400 (670)
T ss_pred ceEEEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEecc
Confidence 3334444 47899999999999753 233332 4788999999999854 323222 4567899999987545
Q ss_pred eEEEccCccccCcccCCCcccEEEEeEEEeCCC------ceeEEee-cccCCEEeEEEEceEEeccceeEE----EEEec
Q 020257 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNI 202 (328)
Q Consensus 134 ~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS-~~~g~i~nI~v~n~~~~~~~~gi~----I~s~~ 202 (328)
=| ++ .-...++||.+.... ..|.--+ .....-.-+.|.||++......+. .+.+-
T Consensus 401 FI-FG-------------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yL 466 (670)
T PLN02217 401 FL-FG-------------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYL 466 (670)
T ss_pred EE-ec-------------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceee
Confidence 43 22 245788899887531 1111111 111234568999999987532111 12222
Q ss_pred CCC-ceEEEEEEEeEEEccc
Q 020257 203 GRG-GFIRNITVSDVYMENA 221 (328)
Q Consensus 203 g~~-g~i~nI~f~nI~i~~~ 221 (328)
|+. .....+.|-+..|.+.
T Consensus 467 GRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 467 GRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred ccCCCCCceEEEEecccCCe
Confidence 332 3346777777777665
No 72
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=72.24 E-value=88 Score=32.39 Aligned_cols=112 Identities=8% Similarity=0.057 Sum_probs=69.6
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+ ..++.+.+.+|.|...-|-+-..+ ..-.++||++.++-+
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGTID 435 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEeecc
Confidence 356788889999998642111122222 247889999999988777664433 335788999887633
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. ..-.|... ++ ...-..+.|.|+++...
T Consensus 436 -FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 436 -FIFGD------AAAIFQNCLIFVRKPLPNQQNTVTAQ-GRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -EEecc------eeEEEEecEEEEecCCCCCCceEEec-CCCCCCCCceEEEEeeEEecC
Confidence 44553 46789999886421 01133322 21 22345788999999864
No 73
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=72.02 E-value=96 Score=30.62 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred EEEeecceEEEeEEEeCCCCc----------EEEeeeeEeEEEEeEEEEcCCCCCCC------CeecccCCccEEEEeeE
Q 020257 64 EFMNSRSIIISNVIFQNSPFW----------NIHPVYCSNVVIRYVTILAPADSPNT------DGIDPDSSSNVCIEDSY 127 (328)
Q Consensus 64 ~~~~~~nv~i~gi~i~n~~~~----------~i~i~~s~nv~I~~v~I~~~~~~~n~------DGidi~~s~nV~I~n~~ 127 (328)
.....+++..++|+|+|.... .|.+ ..+.+.+.+|+|....|-.-. .+..........+++|+
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv-~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRT-DGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE-cCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 334678999999999987431 2332 477899999999986531100 01111123468899999
Q ss_pred EecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc-----eeEEe-ecccCCEEeEEEEceEEeccce-eEEEE-
Q 020257 128 ISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS-----GIAVG-SETSGGVENVLAEHINLYNVGV-GIHVK- 199 (328)
Q Consensus 128 i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~-----gi~ig-S~~~g~i~nI~v~n~~~~~~~~-gi~I~- 199 (328)
|...=|=| ++ .-...++||.+..-.. |.-.- +.....-.-.+|.||++..... ...++
T Consensus 280 IeG~VDFI-FG-------------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g~~~~yLGR 345 (422)
T PRK10531 280 IEGDVDFV-FG-------------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNASGDGVAQLGR 345 (422)
T ss_pred EeecccEE-cc-------------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecCCCCCeeccC
Confidence 98654543 22 2457888888876321 11111 1111234568899999987432 22232
Q ss_pred EecCC---------CceEEEEEEEeEEEcccCe
Q 020257 200 TNIGR---------GGFIRNITVSDVYMENARK 223 (328)
Q Consensus 200 s~~g~---------~g~i~nI~f~nI~i~~~~~ 223 (328)
.|... ......+.|.+..|...=.
T Consensus 346 pW~~~s~~~~y~~~~~~~arvV~~~s~i~~~I~ 378 (422)
T PRK10531 346 AWDVDAGLSAYVNGANTNGQVVIRDSAINEGFN 378 (422)
T ss_pred CCcccccccccccccCCcceEEEEeCcccceeC
Confidence 22110 1123568888877776533
No 74
>PLN02176 putative pectinesterase
Probab=71.99 E-value=95 Score=29.74 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=8.8
Q ss_pred eecceEEEeEEEeCC
Q 020257 67 NSRSIIISNVIFQNS 81 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~ 81 (328)
..+++..++|+|+|.
T Consensus 120 ~a~~F~a~nlT~~Nt 134 (340)
T PLN02176 120 YASNIIITGITFKNT 134 (340)
T ss_pred ECCCEEEEeeEEEeC
Confidence 356666666666654
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=71.75 E-value=1.1e+02 Score=30.84 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=22.7
Q ss_pred eEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEE
Q 020257 91 CSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAV 137 (328)
Q Consensus 91 s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iai 137 (328)
.+++..+|++|.|.......-.+.+ ..+..+.+.+|.|...-|-+-.
T Consensus 269 ~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 269 GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhee
Confidence 4556666666665432111111222 1356666666666665555443
No 76
>PLN02497 probable pectinesterase
Probab=71.38 E-value=97 Score=29.57 Aligned_cols=18 Identities=6% Similarity=0.001 Sum_probs=10.4
Q ss_pred CccEEEEeeEEecCCceE
Q 020257 118 SSNVCIEDSYISTGDDLV 135 (328)
Q Consensus 118 s~nV~I~n~~i~~~DD~i 135 (328)
.+.+.+.||.|...-|-+
T Consensus 149 gDr~~fy~C~f~G~QDTL 166 (331)
T PLN02497 149 GDKSAFYSCGFAGVQDTL 166 (331)
T ss_pred CCcEEEEeeEEeccccce
Confidence 555666666666555544
No 77
>PLN02665 pectinesterase family protein
Probab=70.85 E-value=1.1e+02 Score=29.76 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=85.0
Q ss_pred EEEeecceEEEeEEEeCCCC---------c--EEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCC
Q 020257 64 EFMNSRSIIISNVIFQNSPF---------W--NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 132 (328)
Q Consensus 64 ~~~~~~nv~i~gi~i~n~~~---------~--~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~D 132 (328)
....++++..++|+|+|... - .+.+ ..+...+.+|++.... |-+-. ..-.-..++|+|...=
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~Q-----DTL~~-~~gr~yf~~CyIeG~V 221 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQ-----DTLCD-DKGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceecccc-----ceeEe-CCCCEEEEeeEEeecc
Confidence 34568999999999999632 2 3443 3788999999999854 33322 2346789999998765
Q ss_pred ceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecc------cCCEEeEEEEceEEeccceeEEEE-EecCCC
Q 020257 133 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET------SGGVENVLAEHINLYNVGVGIHVK-TNIGRG 205 (328)
Q Consensus 133 D~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~------~g~i~nI~v~n~~~~~~~~gi~I~-s~~g~~ 205 (328)
|=| ++. -...+++|.+.....+. .|..+ ...-.-..|.||++.+....+.++ .|
T Consensus 222 DFI-FG~-------------g~a~fe~C~i~s~~~~~-~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW---- 282 (366)
T PLN02665 222 DFI-FGS-------------GKSLYLNTELHVVGDGG-LRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW---- 282 (366)
T ss_pred cee-ccc-------------cceeeEccEEEEecCCC-cEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----
Confidence 544 332 45688999987643321 12211 123356789999998864234443 22
Q ss_pred ceEEEEEEEeEEEccc
Q 020257 206 GFIRNITVSDVYMENA 221 (328)
Q Consensus 206 g~i~nI~f~nI~i~~~ 221 (328)
+.-..+.|.+..|.+.
T Consensus 283 ~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 283 MSRPRVVFAYTEMSSV 298 (366)
T ss_pred CCcceEEEEccccCCe
Confidence 2345788888888765
No 78
>PLN02916 pectinesterase family protein
Probab=70.04 E-value=1.2e+02 Score=30.65 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=67.4
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+. .++...+.+|.|...-|-+-..++ .-.+++|++.++-+
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtVD 340 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGTID 340 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecccc
Confidence 3466788888888886532222223331 478888888888887777655432 24678888877522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||.+.-.. ..-.|..... ....-..+.|.|+++...
T Consensus 341 -FIFG~------a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 341 -FIFGD------AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred -eeccC------ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 33443 46678888886431 1223332211 123335788999998864
No 79
>PLN02304 probable pectinesterase
Probab=69.73 E-value=1.1e+02 Score=29.68 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=9.4
Q ss_pred ecceEEEeEEEeCC
Q 020257 68 SRSIIISNVIFQNS 81 (328)
Q Consensus 68 ~~nv~i~gi~i~n~ 81 (328)
.+++..++|+|+|.
T Consensus 161 a~~F~a~nITf~Nt 174 (379)
T PLN02304 161 ASNFIAKNISFMNV 174 (379)
T ss_pred CCCeEEEeeEEEec
Confidence 56667777777665
No 80
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=68.81 E-value=1.5e+02 Score=30.59 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=33.4
Q ss_pred eecceEEEeEEEeCCCC----cEEEe-eeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 67 NSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~----~~i~i-~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
..+++..++|+|+|... -.+-+ ..++...+.+|+|.... |-+-.. ...-..++|+|...=|
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvD 408 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----DTLYAH-AQRQFYRECNIYGTVD 408 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----chhccC-CCceEEEeeEEecccc
Confidence 35778888888877532 12222 23566777777776643 222222 2345566777665434
No 81
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=68.69 E-value=1e+02 Score=31.34 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=57.8
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+. .++.+.+.+|.|...-|-+-..+ ..-.+++|++.++- =
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~IeGtV-D 368 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS-------------AKQFYRECDIYGTI-D 368 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC-------------CceEEEeeEEeccc-c
Confidence 356677777777765421111222221 36777777777777666554333 12367777776642 1
Q ss_pred eEEeecccCCEEeEEEEceEEeccc----eeEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||.+.-.. ..-.|..... ....-..+.|.|+++...
T Consensus 369 FIFG~------a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 369 FIFGN------AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred eeccC------ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 33442 34567777775321 1112322210 112234677888887753
No 82
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=67.58 E-value=1.5e+02 Score=30.30 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=31.4
Q ss_pred eecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 67 NSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
..+++..++|+|+|... ..+-+. .++...+.+|+|....| -+-.. ...-..++|+|...=|
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVD 375 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD-----TLMVH-SQRQFYRECYIYGTVD 375 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc-----hhccC-CCceEEEeeEEeeccc
Confidence 46777777777777542 122222 25556666666665432 12111 2334566666654433
No 83
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=66.19 E-value=1.6e+02 Score=30.05 Aligned_cols=142 Identities=9% Similarity=0.065 Sum_probs=85.8
Q ss_pred CCeEEEEEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 59 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 59 rp~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
+...+. ...+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. ...-..++|+|...=|
T Consensus 296 ~SaT~~-v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVD 368 (530)
T PLN02933 296 QTATVG-VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTID 368 (530)
T ss_pred cceEEE-EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEecccc
Confidence 333444 457899999999999743 233333 4788999999999854 333322 4456999999987655
Q ss_pred eEEEccCccccCcccCCCcccEEEEeEEEeCCC------ceeEEeec-ccCCEEeEEEEceEEeccceeEE----EEEec
Q 020257 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIH----VKTNI 202 (328)
Q Consensus 134 ~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi~----I~s~~ 202 (328)
=| ++ .-...++||.+.... ..|.--+. ....-.-+.|.||++........ .+.+-
T Consensus 369 FI-FG-------------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yL 434 (530)
T PLN02933 369 FI-FG-------------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYL 434 (530)
T ss_pred ee-cc-------------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEe
Confidence 43 32 245788999986531 12222111 11234579999999987432111 12222
Q ss_pred CCC-ceEEEEEEEeEEEccc
Q 020257 203 GRG-GFIRNITVSDVYMENA 221 (328)
Q Consensus 203 g~~-g~i~nI~f~nI~i~~~ 221 (328)
|++ ..-..+.|.+..|.+.
T Consensus 435 GRPW~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 435 GRPWRKYSRTVIIKSFIDDL 454 (530)
T ss_pred ccCCCCCceEEEEecccCCe
Confidence 232 3356777888777765
No 84
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=65.98 E-value=1e+02 Score=31.81 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=60.4
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+ ..++...+.||.|...-|-+-..+ ..=.++||++.++-+
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD- 423 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS-------------NRQFFRECDIYGTVD- 423 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC-------------CcEEEEecEEEeccc-
Confidence 45667777777777542111122222 136777788888777666654333 223667777766522
Q ss_pred eEEeecccCCEEeEEEEceEEeccc----eeEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. ..-.|..... ....-..+.|.|+++...
T Consensus 424 FIFG~------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 424 FIFGN------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred eeccc------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 33332 45678888776421 1123332210 122335777888888754
No 85
>PLN02176 putative pectinesterase
Probab=65.91 E-value=1.2e+02 Score=28.96 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=68.8
Q ss_pred eeEeEEEEeEEEEcCCCC-C-----CCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEE
Q 020257 90 YCSNVVIRYVTILAPADS-P-----NTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 162 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~-~-----n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~ 162 (328)
.++++..+|++|.|.... . ....+.+ ...+.+.+.+|.|...-|-+-..+ ..-.++||++
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~-------------gRqyf~~CyI 186 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK-------------GRHYYKRCVI 186 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC-------------cCEEEEecEE
Confidence 578899999999986421 1 1122222 147899999999998877765433 3467889999
Q ss_pred eCCCceeEEeecccCCEEeEEEEceEEeccc-------eeEEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 163 SSPFSGIAVGSETSGGVENVLAEHINLYNVG-------VGIHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 163 ~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~-------~gi~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
.++-+ +-+|. ....|+||++.... ..-.|... ++ ...-....|.|+++...
T Consensus 187 eG~VD-FIFG~------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~-~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 187 SGGID-FIFGY------AQSIFEGCTLKLTLGIYPPNEPYGTITAQ-GRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred Eeccc-EEecC------ceEEEeccEEEEecccCCCCCCcEEEEeC-CCCCCCCCcEEEEECCEEccC
Confidence 87532 33443 35789999987431 01123222 11 12234678999998864
No 86
>PLN02432 putative pectinesterase
Probab=65.88 E-value=1.2e+02 Score=28.46 Aligned_cols=109 Identities=12% Similarity=0.066 Sum_probs=54.9
Q ss_pred eEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCcee
Q 020257 91 CSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGI 169 (328)
Q Consensus 91 s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi 169 (328)
.+++.++|++|.|... ...-.+.+ ...+.+.+.+|.|...-|-+-... -.-.++||++.+.-+ +
T Consensus 93 a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~-------------gr~yf~~c~I~G~VD-F 157 (293)
T PLN02432 93 ASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT-------------GRHYYRNCYIEGATD-F 157 (293)
T ss_pred CCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC-------------CCEEEEeCEEEeccc-E
Confidence 3455555555555421 11111222 136777778888777666654332 234677777766422 3
Q ss_pred EEeecccCCEEeEEEEceEEeccc-eeEEEEEecC-CCceEEEEEEEeEEEcc
Q 020257 170 AVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIG-RGGFIRNITVSDVYMEN 220 (328)
Q Consensus 170 ~igS~~~g~i~nI~v~n~~~~~~~-~gi~I~s~~g-~~g~i~nI~f~nI~i~~ 220 (328)
-+|. -...|++|++.... ..-.|..... ....-....|.|+++..
T Consensus 158 IFG~------g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 158 ICGN------AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred EecC------ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcc
Confidence 3443 24677777775421 1113332211 11222356788888774
No 87
>PLN02432 putative pectinesterase
Probab=65.01 E-value=1.2e+02 Score=28.34 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=81.9
Q ss_pred EeecceEEEeEEEeCCCC-----cEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 020257 66 MNSRSIIISNVIFQNSPF-----WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 140 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~-----~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~ 140 (328)
...+++.+++|+|+|... -.+.+ ..+.+.+.+|+|.... |-+-.. .-.-..+||.|...=|=| ++.
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v-~gDr~~f~~c~~~G~Q-----DTLy~~-~gr~yf~~c~I~G~VDFI-FG~- 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRV-AGDRAAFYGCRILSYQ-----DTLLDD-TGRHYYRNCYIEGATDFI-CGN- 161 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEE-cCCcEEEEcceEeccc-----ceeEEC-CCCEEEEeCEEEecccEE-ecC-
Confidence 457899999999999632 23443 4788999999999854 333222 356789999998765654 332
Q ss_pred ccccCcccCCCcccEEEEeEEEeCCC---ceeEEeec-ccCCEEeEEEEceEEeccceeEEEEEecCCC-ceEEEEEEEe
Q 020257 141 WDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITVSD 215 (328)
Q Consensus 141 ~~~~g~~~~~~~~nV~I~nc~~~~~~---~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~-g~i~nI~f~n 215 (328)
-...+++|.+..-. ..|.--+. ....-.-..|.||++.... ...++ +. +.-..+.|.|
T Consensus 162 ------------g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g-~~yLG----RpW~~~srvvf~~ 224 (293)
T PLN02432 162 ------------AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAG-TTYLG----RPWGPYSRVVFAL 224 (293)
T ss_pred ------------ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccc-hhhcc----CCCCCccEEEEEe
Confidence 44789999987531 12222111 1122346899999998632 22222 22 3346778888
Q ss_pred EEEccc
Q 020257 216 VYMENA 221 (328)
Q Consensus 216 I~i~~~ 221 (328)
..|.+.
T Consensus 225 t~l~~~ 230 (293)
T PLN02432 225 SYMSSV 230 (293)
T ss_pred cccCCe
Confidence 777754
No 88
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=63.95 E-value=1.5e+02 Score=30.48 Aligned_cols=112 Identities=10% Similarity=0.034 Sum_probs=60.1
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+ ..++.+.+.+|.|...-|-+-..+ ..-..+||++.++-+
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD- 386 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS-------------LRQFYRDSYITGTVD- 386 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC-------------CcEEEEeeEEEeccc-
Confidence 45667777777777542111122222 136777788888877766655433 223677777776522
Q ss_pred eEEeecccCCEEeEEEEceEEeccce----eEEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~~----gi~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-... .-.|.... .....-..+.|.|+++...
T Consensus 387 FIFG~------a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 387 FIFGN------AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred eeccc------ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 33332 456777887754311 11222221 0122334677888887754
No 89
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=63.34 E-value=1e+02 Score=31.54 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=66.4
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-.++||++.++-+
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 375 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS-------------QRQFYRECYIYGTVD 375 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC-------------CceEEEeeEEeeccc
Confidence 346778888888888643212222333 147888888888888766654433 234778888877522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccce----eEEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~~----gi~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 376 -FIFG~------a~avf~~C~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 376 -FIFGN------AAAVFQNCIILPRRPLKGQANVITAQ-GRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred -eEecc------cceEEeccEEEEecCCCCCcceEecC-CCCCCCCCceEEEEeeEEecC
Confidence 33442 456788888865320 1133322 21 22345788999998875
No 90
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=62.87 E-value=1.4e+02 Score=30.21 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=77.6
Q ss_pred eecceEEEeEEEeCCCCc----EEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCc
Q 020257 67 NSRSIIISNVIFQNSPFW----NIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 141 (328)
Q Consensus 67 ~~~nv~i~gi~i~n~~~~----~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~ 141 (328)
..+++..++|+|+|.... .+-+. .++...+.+|+|.... |-+-.. ...-..++|+|...=|=| ++
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~-~~rqyy~~C~I~G~vDFI-FG--- 337 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAA-ALRQFYRECDIYGTIDFI-FG--- 337 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeC-CCcEEEEeeEEEeccceE-ec---
Confidence 468899999999987542 22222 4788999999999754 323222 345688999998654543 33
Q ss_pred cccCcccCCCcccEEEEeEEEeCCCc------eeEE-eecccCCEEeEEEEceEEeccceeEE----EEEecCCC-ceEE
Q 020257 142 DEYGIAYGHPSSGITIRRVTGSSPFS------GIAV-GSETSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GFIR 209 (328)
Q Consensus 142 ~~~g~~~~~~~~nV~I~nc~~~~~~~------gi~i-gS~~~g~i~nI~v~n~~~~~~~~gi~----I~s~~g~~-g~i~ 209 (328)
.-...++||.+..... .|.- |......-.-+.|.||++........ .+.+-|++ ..-.
T Consensus 338 ----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ys 407 (497)
T PLN02698 338 ----------NAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYS 407 (497)
T ss_pred ----------ccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCc
Confidence 2446888888864211 1221 11111234568888888876532111 12222232 2345
Q ss_pred EEEEEeEEEccc
Q 020257 210 NITVSDVYMENA 221 (328)
Q Consensus 210 nI~f~nI~i~~~ 221 (328)
.+.|.+..|.+.
T Consensus 408 r~vf~~s~l~~~ 419 (497)
T PLN02698 408 RAIVMESYIDDA 419 (497)
T ss_pred eEEEEecccCCc
Confidence 666666666654
No 91
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=62.67 E-value=52 Score=33.62 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCC
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 166 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~ 166 (328)
....+++..+|++|.|.......-.+.+ ..++.+.+.+|.|...-|-+-..+ ..-.+++|++.++-
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtV 379 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGTI 379 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-------------CceEEEeeEEeecc
Confidence 3347888899999998653222222222 147889999999988777664433 34578889988752
Q ss_pred ceeEEeecccCCEEeEEEEceEEeccce--e--EEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 167 SGIAVGSETSGGVENVLAEHINLYNVGV--G--IHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 167 ~gi~igS~~~g~i~nI~v~n~~~~~~~~--g--i~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
+ +-+|. -...|+||++.-... | -.|.. +++ ...-..+.|.|+++...
T Consensus 380 D-FIFG~------a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 380 D-YIFGN------AAVVFQACNIVSKMPMPGQFTVITA-QSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred c-eeecc------ceEEEeccEEEEecCCCCCceEEEC-CCCCCCCCCCEEEEEeeEEecC
Confidence 2 33443 467888998865321 1 12222 121 12335788999998754
No 92
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=62.39 E-value=2e+02 Score=29.81 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=8.4
Q ss_pred ecceEEEeEEEeCC
Q 020257 68 SRSIIISNVIFQNS 81 (328)
Q Consensus 68 ~~nv~i~gi~i~n~ 81 (328)
.+++..++|+|+|.
T Consensus 361 ~~~F~a~~itf~Nt 374 (587)
T PLN02313 361 GERFLARDITFQNT 374 (587)
T ss_pred CCCeEEEeeEEEeC
Confidence 45666666666654
No 93
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=61.81 E-value=71 Score=31.45 Aligned_cols=64 Identities=28% Similarity=0.561 Sum_probs=33.6
Q ss_pred cccEEEEeEEEeCC-CceeEEeeccc--------CC-----------EEeEEEEceEEeccceeEEEEEecCCCceEEEE
Q 020257 152 SSGITIRRVTGSSP-FSGIAVGSETS--------GG-----------VENVLAEHINLYNVGVGIHVKTNIGRGGFIRNI 211 (328)
Q Consensus 152 ~~nV~I~nc~~~~~-~~gi~igS~~~--------g~-----------i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI 211 (328)
+-|..++|...... .+|+-+|+.+. +. =.|=.++|+...++ .|+.+.- .|.++.|+||
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~-DG~~~yvsni 340 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM-DGKGGYVSNI 340 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE-ECCS-EEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee-cCCCceEeeE
Confidence 67888888886555 88888887521 00 13445555555554 3444442 3567888888
Q ss_pred EEEeEE
Q 020257 212 TVSDVY 217 (328)
Q Consensus 212 ~f~nI~ 217 (328)
+.+++.
T Consensus 341 ~~~d~~ 346 (549)
T PF09251_consen 341 TVQDCA 346 (549)
T ss_dssp EEES-S
T ss_pred Eeeccc
Confidence 777654
No 94
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=61.00 E-value=1.3e+02 Score=31.69 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=68.2
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-.+++|++.++-+
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD- 400 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-------------HRQFYRDCTISGTID- 400 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-------------CcEEEEeCEEEEecc-
Confidence 46778888888888653222222333 147888888888887767654433 335778888877522
Q ss_pred eEEeecccCCEEeEEEEceEEeccc----eeEEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. ..-.|... ++ ...-..+.|.|+++...
T Consensus 401 FIFG~------a~avfq~C~I~~r~~~~~~~~~ITAq-gr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 401 FLFGD------AAAVFQNCTLLVRKPLLNQACPITAH-GRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred EEecC------ceEEEEccEEEEccCCCCCceeEecC-CCCCCCCCceEEEEeeEEecC
Confidence 33442 45789999997431 12234332 22 23345788999999875
No 95
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=60.01 E-value=78 Score=32.31 Aligned_cols=114 Identities=11% Similarity=0.102 Sum_probs=67.2
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCC
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 166 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~ 166 (328)
....+++..+|++|.|.....+.-.+.+ ..++++.+.+|.|...-|-+-..+ ..-..+||++.++-
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~-------------~rqyy~~C~I~GtV 381 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS-------------LRQFYRECEIYGTI 381 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC-------------CceEEEeeEEeccc
Confidence 4457788888888888653222222222 147888888888888777665443 23477888887752
Q ss_pred ceeEEeecccCCEEeEEEEceEEeccce----eEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 167 SGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 167 ~gi~igS~~~g~i~nI~v~n~~~~~~~~----gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+ +-+|. ....|+||++.-... .-.|..... ....-..+.|.|+++...
T Consensus 382 D-FIFG~------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 382 D-FIFGN------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred c-eEccC------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 2 33443 357888888874311 123332210 112235677888888753
No 96
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=59.02 E-value=2.1e+02 Score=29.10 Aligned_cols=113 Identities=7% Similarity=0.013 Sum_probs=63.8
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..++ .-..+||++.++-+
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtVD 356 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGTVD 356 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeeccc
Confidence 346677788888887643212222222 1367888888888877776654432 23667888876522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. ..-.|..... ....-..+.|.|+++...
T Consensus 357 -FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 357 -FIFGD------ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -EEecC------ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 33443 35678888886521 1122332211 122334677888888754
No 97
>PLN02671 pectinesterase
Probab=59.00 E-value=1.8e+02 Score=28.16 Aligned_cols=113 Identities=4% Similarity=-0.017 Sum_probs=66.5
Q ss_pred eeeeEeEEEEeEEEEcCCC----CCC--CCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEE
Q 020257 88 PVYCSNVVIRYVTILAPAD----SPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVT 161 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~----~~n--~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~ 161 (328)
....+++..+|++|.|... ... +-.+.+ ..+++.+.||.|...-|-+-... -.-.++||+
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~Cy 215 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDET-------------GSHYFYQCY 215 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEeccccccEeCC-------------CcEEEEecE
Confidence 3346778888888888631 111 112233 37888999999988777664433 234778888
Q ss_pred EeCCCceeEEeecccCCEEeEEEEceEEeccce-eEEEEEecC-CCceEEEEEEEeEEEccc
Q 020257 162 GSSPFSGIAVGSETSGGVENVLAEHINLYNVGV-GIHVKTNIG-RGGFIRNITVSDVYMENA 221 (328)
Q Consensus 162 ~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~-gi~I~s~~g-~~g~i~nI~f~nI~i~~~ 221 (328)
+.++-+ +-+|. -...|+||++..... .-.|..... ....-....|.|+++...
T Consensus 216 IeG~VD-FIFG~------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 216 IQGSVD-FIFGN------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred EEEecc-EEecc------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 877522 33443 357889998875321 123333211 112235678999998763
No 98
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=58.73 E-value=2.2e+02 Score=29.20 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=83.0
Q ss_pred EEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEcc
Q 020257 65 FMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS 139 (328)
Q Consensus 65 ~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks 139 (328)
....+++..++|+|+|... ..+-+. .++...+.+|+|....| -+-.. ...-..++|+|...=|=| ++
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG- 390 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD-----TLYAH-SLRQFYRDSYITGTVDFI-FG- 390 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceec-CCcEEEEeeEEEecccee-cc-
Confidence 3457999999999999643 233322 47899999999998653 23322 445699999998765544 22
Q ss_pred CccccCcccCCCcccEEEEeEEEeCCC------ceeEEee-cccCCEEeEEEEceEEeccceeE----EEEEecCCC-ce
Q 020257 140 GWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GF 207 (328)
Q Consensus 140 ~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS-~~~g~i~nI~v~n~~~~~~~~gi----~I~s~~g~~-g~ 207 (328)
.-...++||.+.... ..|.--+ .....-.-+.|.||++....... ..+++-|+. ..
T Consensus 391 ------------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 458 (548)
T PLN02301 391 ------------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKE 458 (548)
T ss_pred ------------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecCCCC
Confidence 356788999986531 1122211 11234567999999998753211 112222222 23
Q ss_pred EEEEEEEeEEEccc
Q 020257 208 IRNITVSDVYMENA 221 (328)
Q Consensus 208 i~nI~f~nI~i~~~ 221 (328)
...+.|-+..|.+.
T Consensus 459 ysr~V~~~s~l~~~ 472 (548)
T PLN02301 459 YSRTVVMQSYIDDH 472 (548)
T ss_pred CceEEEEecccCCe
Confidence 45666666666654
No 99
>PLN02197 pectinesterase
Probab=58.27 E-value=1e+02 Score=31.91 Aligned_cols=112 Identities=12% Similarity=0.120 Sum_probs=63.9
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+. .++.+.+.+|.|...-|-+-..++ .-.++||++.++-+
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~GtVD 427 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGTVD 427 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEeccc
Confidence 3467788888888875421111222221 378888888888887776655432 23677888876522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc--ee--EEEEEecCC---CceEEEEEEEeEEEccc
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG--VG--IHVKTNIGR---GGFIRNITVSDVYMENA 221 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~--~g--i~I~s~~g~---~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. .+ -.|.. +++ ...-..+.|.|+++...
T Consensus 428 -FIFG~------a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 428 -FIFGK------SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred -ccccc------eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecC
Confidence 33332 23778888876321 11 12322 222 12335688888888864
No 100
>PLN02497 probable pectinesterase
Probab=57.97 E-value=1.8e+02 Score=27.83 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=43.8
Q ss_pred EeecceEEEeEEEeCCCCc-----------EEEe-eeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 66 MNSRSIIISNVIFQNSPFW-----------NIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~~-----------~i~i-~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
...+++..++|+|+|...+ .+-+ ...+...+.+|++....| -+-. ....-..++|+|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~-~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWD-SDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceee-CCCcEEEEeCEEEeccc
Confidence 3467777777777775321 2221 236667777777776442 2211 23456777777765444
Q ss_pred eEEEccCccccCcccCCCcccEEEEeEEEeC
Q 020257 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSS 164 (328)
Q Consensus 134 ~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~ 164 (328)
=| ++ .-...++||.+..
T Consensus 186 FI-FG-------------~g~a~Fe~C~I~s 202 (331)
T PLN02497 186 FI-FG-------------SGQSIYESCVIQV 202 (331)
T ss_pred EE-cc-------------CceEEEEccEEEE
Confidence 33 22 2345667777654
No 101
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=57.59 E-value=1e+02 Score=31.66 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=56.2
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-.++||++.++-+
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD- 403 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS-------------LRQFYRECDIYGTVD- 403 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC-------------CCEEEEeeEEecccc-
Confidence 35667777777776542111122222 136667777777776666554433 223667777766422
Q ss_pred eEEeecccCCEEeEEEEceEEeccc----eeEEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. -.+.|+||.+.-.. ..-.|.... .....-..+.|.|+++...
T Consensus 404 FIFG~------a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 404 FIFGN------AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred eeccc------ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 33332 35567777775421 011222211 0112234667777777653
No 102
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=57.57 E-value=2.2e+02 Score=28.85 Aligned_cols=113 Identities=6% Similarity=-0.020 Sum_probs=65.6
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeeccc-CCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi~-~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+. .++...+.+|.|...-|-+-..+ ..-.+++|++.++-+
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~-------------~RqyyrdC~I~GtVD- 347 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR-------------DRQFYRECFITGTVD- 347 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC-------------CCEEEEeeEEeeccc-
Confidence 456777788888876432112223331 47888888888887767664433 335778888877522
Q ss_pred eEEeecccCCEEeEEEEceEEeccc----eeEEEEEecC-CCceEEEEEEEeEEEcccC
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIG-RGGFIRNITVSDVYMENAR 222 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g-~~g~i~nI~f~nI~i~~~~ 222 (328)
+-+|. ..+.|+||++.-.. ..-.|..... ....-..+.|.|+++....
T Consensus 348 FIFG~------a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 348 FICGN------AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred eEecc------eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 33443 46788888887531 1123433211 1223346888888888653
No 103
>PLN02197 pectinesterase
Probab=57.53 E-value=1.8e+02 Score=30.04 Aligned_cols=135 Identities=11% Similarity=0.053 Sum_probs=82.7
Q ss_pred EeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 020257 66 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 140 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~ 140 (328)
...+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. ...-..++|+|...=|=| ++.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVN-NGRQFYRNIVVSGTVDFI-FGK- 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEec-CCCEEEEeeEEEeccccc-ccc-
Confidence 458999999999999643 233333 4789999999999854 333332 456789999998765543 322
Q ss_pred ccccCcccCCCcccEEEEeEEEeCCC--ceeEEeeccc-------CCEEeEEEEceEEecccee----EEEEEecCCC-c
Q 020257 141 WDEYGIAYGHPSSGITIRRVTGSSPF--SGIAVGSETS-------GGVENVLAEHINLYNVGVG----IHVKTNIGRG-G 206 (328)
Q Consensus 141 ~~~~g~~~~~~~~nV~I~nc~~~~~~--~gi~igS~~~-------g~i~nI~v~n~~~~~~~~g----i~I~s~~g~~-g 206 (328)
.-..++||.+.... .+- -+..+. ..-.-+.|.||++.....- ...+++-|+. .
T Consensus 433 ------------a~avfq~C~i~~r~~~~~~-~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~ 499 (588)
T PLN02197 433 ------------SATVIQNSLIVVRKGSKGQ-YNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWK 499 (588)
T ss_pred ------------eeeeeecCEEEEecCCCCC-ceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCC
Confidence 34888999986431 110 111111 1235689999999875321 1122333333 3
Q ss_pred eEEEEEEEeEEEccc
Q 020257 207 FIRNITVSDVYMENA 221 (328)
Q Consensus 207 ~i~nI~f~nI~i~~~ 221 (328)
....+.|-+..|.+.
T Consensus 500 ~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 500 KFSTTVIISTEIGDL 514 (588)
T ss_pred CCceEEEEecccCCe
Confidence 456677777777654
No 104
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=54.99 E-value=93 Score=27.10 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=6.9
Q ss_pred EEEEEEeEEEcccC
Q 020257 209 RNITVSDVYMENAR 222 (328)
Q Consensus 209 ~nI~f~nI~i~~~~ 222 (328)
.|-++||-.++.+.
T Consensus 64 ~ntlIENNVfDG~y 77 (198)
T PF08480_consen 64 YNTLIENNVFDGVY 77 (198)
T ss_pred cccEEEeeeecccc
Confidence 34455555555543
No 105
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=54.12 E-value=2.6e+02 Score=28.53 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=85.5
Q ss_pred eEEEEEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceE
Q 020257 61 NLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 135 (328)
Q Consensus 61 ~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i 135 (328)
..+. ...+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. ...-..++|+|...=|=|
T Consensus 286 AT~~-v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI 358 (520)
T PLN02201 286 ATFA-VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTH-TMRQFYRECRITGTVDFI 358 (520)
T ss_pred EEEE-EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeC-CCCEEEEeeEEeecccEE
Confidence 3444 447999999999999743 233333 4788999999999854 333333 445688999998765544
Q ss_pred EEccCccccCcccCCCcccEEEEeEEEeCCC------ceeEEeec-ccCCEEeEEEEceEEeccceeEE----EEEecCC
Q 020257 136 AVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIH----VKTNIGR 204 (328)
Q Consensus 136 aiks~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi~----I~s~~g~ 204 (328)
++ .-...++||.+.... ..|.--+. ....-.-+.|.||++........ .+.+-|+
T Consensus 359 -FG-------------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGR 424 (520)
T PLN02201 359 -FG-------------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGR 424 (520)
T ss_pred -ec-------------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeec
Confidence 33 245889999987621 22222111 11234578999999986432111 1122223
Q ss_pred C-ceEEEEEEEeEEEccc
Q 020257 205 G-GFIRNITVSDVYMENA 221 (328)
Q Consensus 205 ~-g~i~nI~f~nI~i~~~ 221 (328)
. ..-..+.|-+..|.+.
T Consensus 425 PW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 425 PWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred CCCCCceEEEEecCcCCe
Confidence 2 3456777777777765
No 106
>PLN02314 pectinesterase
Probab=53.66 E-value=1.1e+02 Score=31.75 Aligned_cols=113 Identities=9% Similarity=0.073 Sum_probs=63.8
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-..+||++.++-+
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~rq~y~~C~I~GtvD 428 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS-------------NRQFYRDCDITGTID 428 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC-------------CCEEEEeeEEEeccc
Confidence 346677788888887642111122222 146778888888887767654433 224677888876522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEecCC--CceEEEEEEEeEEEcccC
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENAR 222 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~g~--~g~i~nI~f~nI~i~~~~ 222 (328)
+-+|. ....|+||.+.-.. ..-.|... ++ ...-..+.|.|+++....
T Consensus 429 -FIFG~------a~avf~~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 429 -FIFGN------AAVVFQNCNIQPRQPLPNQFNTITAQ-GKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -eeccC------ceeeeeccEEEEecCCCCCCceEecC-CCCCCCCCCEEEEEeeEEecCC
Confidence 33432 45678888886421 01123222 21 233456788888887653
No 107
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=52.68 E-value=1.3e+02 Score=30.76 Aligned_cols=114 Identities=14% Similarity=0.068 Sum_probs=62.2
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCC
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 166 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~ 166 (328)
....+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-..+||++.++-
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~-------------~rq~y~~c~I~GtV 375 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS-------------LRQFYRECDIYGTV 375 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC-------------CcEEEEeeEEeecc
Confidence 3345677777888877543211122322 136777788888877666654433 22467777777652
Q ss_pred ceeEEeecccCCEEeEEEEceEEeccc----eeEEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 167 SGIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 167 ~gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
+ +-+|. ....|+||++.-.. ..-.|.... .....-..+.|.|+++...
T Consensus 376 D-FIFG~------a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 376 D-FIFGN------AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred c-eEeec------ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 2 33442 45678888876421 011232221 0112234678888888764
No 108
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=51.87 E-value=1.1e+02 Score=31.55 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=69.3
Q ss_pred eeeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCC
Q 020257 88 PVYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 166 (328)
Q Consensus 88 i~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~ 166 (328)
....+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-.+++|++.++-
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~-------------~rq~y~~c~I~Gtv 424 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS-------------NRQFFVKCHITGTV 424 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEeecc
Confidence 3346788888888888653212122222 147888899999888777665443 22377888887763
Q ss_pred ceeEEeecccCCEEeEEEEceEEeccce--e--EEEEEecC-CCceEEEEEEEeEEEcccC
Q 020257 167 SGIAVGSETSGGVENVLAEHINLYNVGV--G--IHVKTNIG-RGGFIRNITVSDVYMENAR 222 (328)
Q Consensus 167 ~gi~igS~~~g~i~nI~v~n~~~~~~~~--g--i~I~s~~g-~~g~i~nI~f~nI~i~~~~ 222 (328)
+ +-+|. ..+.|+||++.-... + -.|..... +...-..+.|.|+++....
T Consensus 425 D-FIFG~------a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 425 D-FIFGN------AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred c-eeccc------eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 2 33442 467899998875311 1 12332211 1233457889999997653
No 109
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=51.86 E-value=1.1e+02 Score=31.40 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=59.2
Q ss_pred eeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCce
Q 020257 90 YCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 168 (328)
Q Consensus 90 ~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~g 168 (328)
..+++..+|++|.|.......-.+.+ ..++...+.+|.|...-|-+-..+ ..-.+++|++.++-+
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD- 410 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS-------------HRQFFRDCTVSGTVD- 410 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEecccc-
Confidence 35667777777777542111122222 136777777777777666554332 234667777766522
Q ss_pred eEEeecccCCEEeEEEEceEEeccc--e--eEEEEEecCC--CceEEEEEEEeEEEccc
Q 020257 169 IAVGSETSGGVENVLAEHINLYNVG--V--GIHVKTNIGR--GGFIRNITVSDVYMENA 221 (328)
Q Consensus 169 i~igS~~~g~i~nI~v~n~~~~~~~--~--gi~I~s~~g~--~g~i~nI~f~nI~i~~~ 221 (328)
+-+|. ....|+||++.-.. . .-.|... ++ ...-..+.|.|+++...
T Consensus 411 FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~C~it~~ 462 (572)
T PLN02990 411 FIFGD------AKVVLQNCNIVVRKPMKGQSCMITAQ-GRSDVRESTGLVLQNCHITGE 462 (572)
T ss_pred eEccC------ceEEEEccEEEEecCCCCCceEEEeC-CCCCCCCCceEEEEeeEEecC
Confidence 33332 34677888776421 0 1233322 21 12234677888888764
No 110
>PLN02304 probable pectinesterase
Probab=51.57 E-value=2.4e+02 Score=27.47 Aligned_cols=113 Identities=9% Similarity=0.060 Sum_probs=68.4
Q ss_pred eeeEeEEEEeEEEEcCCCC-----CCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEE
Q 020257 89 VYCSNVVIRYVTILAPADS-----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 162 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~-----~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~ 162 (328)
...+++..+|++|.|.... ...-.+.+ ..++.+.+.+|.|...-|-+-... ..-.++||++
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~-------------gR~Yf~~CyI 225 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR-------------GRHYFKDCYI 225 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC-------------CCEEEEeeEE
Confidence 3467889999999986421 01112222 148899999999998877765433 2357889999
Q ss_pred eCCCceeEEeecccCCEEeEEEEceEEecccee---------EEEEEec-CCCceEEEEEEEeEEEccc
Q 020257 163 SSPFSGIAVGSETSGGVENVLAEHINLYNVGVG---------IHVKTNI-GRGGFIRNITVSDVYMENA 221 (328)
Q Consensus 163 ~~~~~gi~igS~~~g~i~nI~v~n~~~~~~~~g---------i~I~s~~-g~~g~i~nI~f~nI~i~~~ 221 (328)
.++-+ +-+|. -...|++|++...... -.|.... .....-....|.|+++...
T Consensus 226 eG~VD-FIFG~------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 226 QGSID-FIFGD------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ccccc-EEecc------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccC
Confidence 77522 44443 3568999988753211 1333221 1122334667899988753
No 111
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=51.50 E-value=2.9e+02 Score=28.32 Aligned_cols=140 Identities=7% Similarity=0.010 Sum_probs=85.3
Q ss_pred eEEEEEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceE
Q 020257 61 NLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 135 (328)
Q Consensus 61 ~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i 135 (328)
..+.+ ..+++..++|+|+|... -.+-+. .++...+.+|+|..-. |-+-.. +..-..+||+|...=|=|
T Consensus 306 aT~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ-----DTLy~~-~~rq~y~~c~I~GtVDFI 378 (538)
T PLN03043 306 STFAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ-----DTLYVH-SLRQFYRECDIYGTVDFI 378 (538)
T ss_pred eEEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-----cccccC-CCcEEEEeeEEeeccceE
Confidence 34444 57999999999999643 233332 4788999999999864 333332 456789999998765544
Q ss_pred EEccCccccCcccCCCcccEEEEeEEEeCC------CceeEEeec-ccCCEEeEEEEceEEeccceeE----EEEEecCC
Q 020257 136 AVKSGWDEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGSE-TSGGVENVLAEHINLYNVGVGI----HVKTNIGR 204 (328)
Q Consensus 136 aiks~~~~~g~~~~~~~~nV~I~nc~~~~~------~~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi----~I~s~~g~ 204 (328)
++ .-...++||.+... ...|.--+. ....-.-+.|.||++.....-. ..+++-|+
T Consensus 379 -FG-------------~a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGR 444 (538)
T PLN03043 379 -FG-------------NAAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGR 444 (538)
T ss_pred -ee-------------cceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccC
Confidence 33 35578899998663 122222211 1123457999999998753210 11222233
Q ss_pred C-ceEEEEEEEeEEEccc
Q 020257 205 G-GFIRNITVSDVYMENA 221 (328)
Q Consensus 205 ~-g~i~nI~f~nI~i~~~ 221 (328)
. ..-..+.|-+..|.+.
T Consensus 445 pW~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 445 PWKPYSRTVYMQSYIGDL 462 (538)
T ss_pred CCCCCceEEEEecccCCe
Confidence 2 2345677777777654
No 112
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=51.43 E-value=1.3e+02 Score=31.01 Aligned_cols=114 Identities=9% Similarity=0.044 Sum_probs=68.9
Q ss_pred eeeEeEEEEeEEEEcCCCCCCCCeecc-cCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCc
Q 020257 89 VYCSNVVIRYVTILAPADSPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 167 (328)
Q Consensus 89 ~~s~nv~I~~v~I~~~~~~~n~DGidi-~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~ 167 (328)
...+++..+|++|.|.......-.+.+ ..++.+.+.+|.|...-|-+-..+ ..-.++||++.++-+
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~rq~y~~C~I~GtvD 408 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA-------------QRQFYRECNIYGTVD 408 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC-------------CceEEEeeEEecccc
Confidence 346788899999988653211122222 247888999999988777654433 234688898877522
Q ss_pred eeEEeecccCCEEeEEEEceEEeccc----eeEEEEEec-CCCceEEEEEEEeEEEcccC
Q 020257 168 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNI-GRGGFIRNITVSDVYMENAR 222 (328)
Q Consensus 168 gi~igS~~~g~i~nI~v~n~~~~~~~----~gi~I~s~~-g~~g~i~nI~f~nI~i~~~~ 222 (328)
+-+|. ..+.|+||++.-.. ..-.|.... .....-..+.|.|+++....
T Consensus 409 -FIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 409 -FIFGN------SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred -eeecc------ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 44443 46789999886421 111333321 01233457889999988653
No 113
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=49.84 E-value=3.2e+02 Score=28.34 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=84.2
Q ss_pred EEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEcc
Q 020257 65 FMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS 139 (328)
Q Consensus 65 ~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks 139 (328)
....+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. ...-..++|+|...=|=| ++
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG- 427 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI-FG- 427 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee-cc-
Confidence 3457999999999998643 233333 4788999999999864 323322 456789999998765543 22
Q ss_pred CccccCcccCCCcccEEEEeEEEeCCC------ceeEEeec-ccCCEEeEEEEceEEeccceeE----EEEEecCCC-ce
Q 020257 140 GWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GF 207 (328)
Q Consensus 140 ~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi----~I~s~~g~~-g~ 207 (328)
.-...++||.+.... .-|.--+. ....-.-+.|.||++....... ..+++-|+. ..
T Consensus 428 ------------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 495 (587)
T PLN02484 428 ------------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKL 495 (587)
T ss_pred ------------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCC
Confidence 356788999987531 11111111 1123467999999998743210 112222332 33
Q ss_pred EEEEEEEeEEEccc
Q 020257 208 IRNITVSDVYMENA 221 (328)
Q Consensus 208 i~nI~f~nI~i~~~ 221 (328)
...+.|.+..|.+.
T Consensus 496 ysrvV~~~s~i~~~ 509 (587)
T PLN02484 496 YSRTVYMMSYMGDH 509 (587)
T ss_pred CceEEEEecccCCe
Confidence 56777777777765
No 114
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=49.66 E-value=24 Score=18.75 Aligned_cols=11 Identities=45% Similarity=0.601 Sum_probs=4.7
Q ss_pred cEEEEeeEEec
Q 020257 120 NVCIEDSYIST 130 (328)
Q Consensus 120 nV~I~n~~i~~ 130 (328)
+++|+++.|..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444443
No 115
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=47.92 E-value=3.2e+02 Score=27.78 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=83.3
Q ss_pred EeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccC
Q 020257 66 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 140 (328)
Q Consensus 66 ~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~ 140 (328)
...+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-. .+..-..++|+|...=|=| ++
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~-~~~RqyyrdC~I~GtVDFI-FG-- 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYP-HRDRQFYRECFITGTVDFI-CG-- 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceee-CCCCEEEEeeEEeeccceE-ec--
Confidence 347899999999999642 233333 4788999999999854 33332 2557799999998765544 33
Q ss_pred ccccCcccCCCcccEEEEeEEEeCCC------ceeEEeecc-cCCEEeEEEEceEEeccceeE----EEEEecCCC-ceE
Q 020257 141 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSET-SGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 208 (328)
Q Consensus 141 ~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS~~-~g~i~nI~v~n~~~~~~~~gi----~I~s~~g~~-g~i 208 (328)
.-.+.++||.+.... .-|.--+.. ...-.-+.|.||++....... ..+++-|++ ...
T Consensus 352 -----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~y 420 (509)
T PLN02488 352 -----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKY 420 (509)
T ss_pred -----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCC
Confidence 356889999987531 111111111 123457999999998754211 122232332 234
Q ss_pred EEEEEEeEEEccc
Q 020257 209 RNITVSDVYMENA 221 (328)
Q Consensus 209 ~nI~f~nI~i~~~ 221 (328)
..+.|-+..|.+.
T Consensus 421 SrvVf~~s~i~~~ 433 (509)
T PLN02488 421 STVAVLQSFIGDL 433 (509)
T ss_pred ccEEEEeccCCCe
Confidence 5566666666654
No 116
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=47.05 E-value=3.4e+02 Score=27.95 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=85.5
Q ss_pred CCeEEEEEeecceEEEeEEEeCCCC----cEEEe-eeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 59 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 59 rp~~i~~~~~~nv~i~gi~i~n~~~----~~i~i-~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
+...+.+ ..+++..++|+|+|... -.+-+ ..++...+.+|+|.... |-+-.. ...-..++|+|...=|
T Consensus 331 ~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 331 NSATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTH-SLRQFYRECDIYGTVD 403 (566)
T ss_pred cceeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEEC-CCCEEEEeeEEecccc
Confidence 3344544 46999999999999632 22322 25788999999999854 333333 4567999999986555
Q ss_pred eEEEccCccccCcccCCCcccEEEEeEEEeCCC------ceeEEee-cccCCEEeEEEEceEEeccceeE----EEEEec
Q 020257 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNI 202 (328)
Q Consensus 134 ~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS-~~~g~i~nI~v~n~~~~~~~~gi----~I~s~~ 202 (328)
=| ++ .-.+.++||.+.... ..|.--+ .....-.-+.|.||++....... ..+.+-
T Consensus 404 FI-FG-------------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yL 469 (566)
T PLN02713 404 FI-FG-------------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYL 469 (566)
T ss_pred ee-cc-------------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceee
Confidence 43 32 356889999986531 1122211 11223467899999998753210 112222
Q ss_pred CCC-ceEEEEEEEeEEEccc
Q 020257 203 GRG-GFIRNITVSDVYMENA 221 (328)
Q Consensus 203 g~~-g~i~nI~f~nI~i~~~ 221 (328)
|+. ..-..+.|.+..|.+.
T Consensus 470 GRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 470 GRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred ecCCCCcceEEEEecccCCe
Confidence 222 2345677777777765
No 117
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=41.49 E-value=2.4e+02 Score=24.61 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=7.3
Q ss_pred CccEEEEeeEEec
Q 020257 118 SSNVCIEDSYIST 130 (328)
Q Consensus 118 s~nV~I~n~~i~~ 130 (328)
.+||+|++-.|..
T Consensus 33 a~nVhIhhN~fY~ 45 (198)
T PF08480_consen 33 AKNVHIHHNIFYD 45 (198)
T ss_pred cccEEEECcEeec
Confidence 3466666655543
No 118
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=40.79 E-value=3.6e+02 Score=26.68 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=23.5
Q ss_pred EEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEec
Q 020257 72 IISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 130 (328)
Q Consensus 72 ~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~ 130 (328)
+|++=+|+++.. +|.+..-.+-+|++=.+.......++-||.+.. ++=+|.|-+|..
T Consensus 226 ~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~g 282 (425)
T PF14592_consen 226 TIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFEG 282 (425)
T ss_dssp EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEEE
T ss_pred eEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceeec
Confidence 445555555554 455665555566655555432223455777763 444555555543
No 119
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=38.78 E-value=4.6e+02 Score=27.07 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=84.5
Q ss_pred eEEEEEeecceEEEeEEEeCCCC----cEEEee-eeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceE
Q 020257 61 NLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 135 (328)
Q Consensus 61 ~~i~~~~~~nv~i~gi~i~n~~~----~~i~i~-~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i 135 (328)
..+.+ ..+++..++|+|+|... -.+-+. .++...+.+|+|.... |-+-.. +..-..++|+|...=|=|
T Consensus 340 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI 412 (572)
T PLN02990 340 ATVAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFI 412 (572)
T ss_pred eEEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceE
Confidence 33444 47899999999999753 233332 4788999999999854 323322 456788999998765544
Q ss_pred EEccCccccCcccCCCcccEEEEeEEEeCCC--c---e-eEEee-cccCCEEeEEEEceEEeccceeEE----EEEecCC
Q 020257 136 AVKSGWDEYGIAYGHPSSGITIRRVTGSSPF--S---G-IAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNIGR 204 (328)
Q Consensus 136 aiks~~~~~g~~~~~~~~nV~I~nc~~~~~~--~---g-i~igS-~~~g~i~nI~v~n~~~~~~~~gi~----I~s~~g~ 204 (328)
++ .-...++||.+.... . + |.--+ .....-.-+.|.||++........ .+.+-|+
T Consensus 413 -FG-------------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGR 478 (572)
T PLN02990 413 -FG-------------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGR 478 (572)
T ss_pred -cc-------------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeec
Confidence 32 245788999986531 1 1 11111 111234579999999987542111 1222222
Q ss_pred C-ceEEEEEEEeEEEccc
Q 020257 205 G-GFIRNITVSDVYMENA 221 (328)
Q Consensus 205 ~-g~i~nI~f~nI~i~~~ 221 (328)
. .....+.|.+..|.+.
T Consensus 479 pW~~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 479 PWKEFSRTIIMGTTIDDV 496 (572)
T ss_pred CCCCCceEEEEecccCCe
Confidence 2 2346777777777765
No 120
>PLN02314 pectinesterase
Probab=32.20 E-value=5.9e+02 Score=26.37 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=85.7
Q ss_pred CCeEEEEEeecceEEEeEEEeCCCC----cEEEe-eeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCc
Q 020257 59 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHP-VYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133 (328)
Q Consensus 59 rp~~i~~~~~~nv~i~gi~i~n~~~----~~i~i-~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD 133 (328)
+...+.+ ..+++..++|+|+|... -.+-+ ..++...+.+|+|.... |-+-.. +..-..++|+|...=|
T Consensus 356 ~saT~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvD 428 (586)
T PLN02314 356 STATFAA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTID 428 (586)
T ss_pred ceEEEEE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEeccc
Confidence 3334444 57999999999999742 22222 25788999999999854 333222 4567899999987655
Q ss_pred eEEEccCccccCcccCCCcccEEEEeEEEeCCC------ceeEEeec-ccCCEEeEEEEceEEeccceeEEEEEecCCC-
Q 020257 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTNIGRG- 205 (328)
Q Consensus 134 ~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~------~gi~igS~-~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~- 205 (328)
=| ++ .-...++||.+.... ..|.--+. ....-.-+.|.||++..... +..+++-|+.
T Consensus 429 FI-FG-------------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW 493 (586)
T PLN02314 429 FI-FG-------------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPW 493 (586)
T ss_pred ee-cc-------------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCC
Confidence 44 32 356788999987531 11211111 11334678999999987542 2222332332
Q ss_pred ceEEEEEEEeEEEccc
Q 020257 206 GFIRNITVSDVYMENA 221 (328)
Q Consensus 206 g~i~nI~f~nI~i~~~ 221 (328)
..-..+.|-+..|.+.
T Consensus 494 ~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 494 KDFSTTVIMQSYIGSF 509 (586)
T ss_pred CCCceEEEEecccCCc
Confidence 2345567777777665
No 121
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=30.94 E-value=1.3e+02 Score=29.77 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=46.0
Q ss_pred CccEEEEeeE-EecCCceEEEccCcc--ccCcc----------cCCCcccEEEEeEEEeCCCceeEEeeccc-CCEEeEE
Q 020257 118 SSNVCIEDSY-ISTGDDLVAVKSGWD--EYGIA----------YGHPSSGITIRRVTGSSPFSGIAVGSETS-GGVENVL 183 (328)
Q Consensus 118 s~nV~I~n~~-i~~~DD~iaiks~~~--~~g~~----------~~~~~~nV~I~nc~~~~~~~gi~igS~~~-g~i~nI~ 183 (328)
|-|..++|+. |..-.|++.+.+.++ ..-.+ +..--.|=.|+|...++ +.|+-++..++ +.++||+
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~-~lGVG~~~DG~~~yvsni~ 341 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRG-SLGVGIGMDGKGGYVSNIT 341 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEEECCS-EEEEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheec-cceeeeeecCCCceEeeEE
Confidence 4567777766 455678999988532 11000 11113566789988876 57777766543 4688888
Q ss_pred EEceEEeccceeEEEEEecCCCceEEEEEEE
Q 020257 184 AEHINLYNVGVGIHVKTNIGRGGFIRNITVS 214 (328)
Q Consensus 184 v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~ 214 (328)
+++|. ..|+.++.. .-.+.||++-
T Consensus 342 ~~d~~----g~G~~~~~~---~~~ftNitvI 365 (549)
T PF09251_consen 342 VQDCA----GAGIFIRGT---NKVFTNITVI 365 (549)
T ss_dssp EES-S----SESEEEECC---S-EEEEEEEE
T ss_pred eeccc----CCceEEeec---CCceeeeEEE
Confidence 88873 356666653 3344444443
No 122
>PF08603 CAP_C: Adenylate cyclase associated (CAP) C terminal; InterPro: IPR013912 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the C-terminal domain of CAP proteins, which is responsible for G-actin-binding. This domain has a superhelical structure, where the superhelix turns are made of two beta-strands each []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1K4Z_B 1KQ5_A 2B0R_A 1K8F_B.
Probab=28.04 E-value=2.7e+02 Score=23.53 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=5.9
Q ss_pred eeEEEeccEeeEEE
Q 020257 20 SDFLISKFEKISFI 33 (328)
Q Consensus 20 ~li~~~~~~nv~I~ 33 (328)
..+++.+|+|.+|.
T Consensus 33 qsVyI~~C~n~~i~ 46 (159)
T PF08603_consen 33 QSVYIYNCKNSTIQ 46 (159)
T ss_dssp -EEEEEEEESEEEE
T ss_pred cEEEEEcccccEEE
Confidence 34444445444443
No 123
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=25.81 E-value=1.9e+02 Score=27.64 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=35.3
Q ss_pred CccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEeecccCCEEeEEEEceEEecc
Q 020257 118 SSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV 192 (328)
Q Consensus 118 s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS~~~g~i~nI~v~n~~~~~~ 192 (328)
++.+.++||.+...-|-+=++..--+.-...+ -.-.-.++||++.+ +--+-+|+. -++|.+|.+.-.
T Consensus 220 gDka~frnv~llg~QdTlFv~~~~~~~~~~tn-~~~R~yftNsyI~G-dvDfIfGsg------taVFd~c~i~~~ 286 (405)
T COG4677 220 GDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN-RQPRTYFTNSYIEG-DVDFIFGSG------TAVFDNCEIQVV 286 (405)
T ss_pred CCceeeeeeeEeeccceEEecCCCCccccccC-cchhhheecceecc-cceEEeccc------eEEeccceEEEe
Confidence 56777777777666565544442000000000 01133577888876 445666663 246777777643
Done!