BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020258
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/254 (46%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+DW NLGF + Y + ++ G+L+ + +S SS L+YGQ FEG+KAYR
Sbjct: 9 LDWKNLGFEYHKLPFRYISYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKAYR 68
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKG-SLY 179
+DG + LFRP+ NA RLQ A+R+ MP D+FIDA KQ AN+ +VPP G G +LY
Sbjct: 69 TKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLY 128
Query: 180 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239
+RPLL+G G ++G+ PA EY F +FA PVGNYFK GLAP N ++D++ RA P G G K
Sbjct: 129 LRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGAAK 188
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIF-ILKGNIISTPATSGTI 298
NYA L A R FSDV+YLD +EEV S N F I K N TP S +I
Sbjct: 189 VGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITP-LSPSI 247
Query: 299 LAGITRKSIIEIAS 312
L +T+ S++ +A
Sbjct: 248 LPSVTKYSLLYLAE 261
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 169/261 (64%), Gaps = 6/261 (2%)
Query: 65 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 33 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 92
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 182
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 93 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 152
Query: 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 153 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 212
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 298
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 213 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 272
Query: 299 LAGITRKSIIEIASDCGFQVR 319
L GITR S++++A+D GF V
Sbjct: 273 LPGITRDSLLQLATDAGFAVE 293
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 204 bits (520), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 169/261 (64%), Gaps = 6/261 (2%)
Query: 65 NLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
N GFG D+M ++ + D + ++ YG I+L PS+ VL+YGQ +FEG+KAYR D
Sbjct: 32 NPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWAD 91
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRP 182
G +V FRP+ NA RLQ+ A R+ +P + FI++++Q +++WVPP G + SLY+RP
Sbjct: 92 GSIVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRP 151
Query: 183 LLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242
++ + P LG+ P+ EY +L+ ASP G YFK G+ P+++++ E+ RA+PGG G K
Sbjct: 152 FVIATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGG 211
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTI 298
NYA L A ++A G V++LD++ ++ +EE+ N+F + G+ + TP SG++
Sbjct: 212 NYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSL 271
Query: 299 LAGITRKSIIEIASDCGFQVR 319
L GITR S++++A+D GF V
Sbjct: 272 LPGITRDSLLQLATDAGFAVE 292
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 159/258 (61%), Gaps = 6/258 (2%)
Query: 67 GFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQ 125
GFG D+M ++ + + R+ YG IEL PS+ VL+Y Q +FEG+KAYR DG
Sbjct: 30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGS 89
Query: 126 LVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPG-KGSLYIRPLL 184
+V FR D NA RL++ A R+ +P FI++++Q +K WVP G + +LY+RP +
Sbjct: 90 IVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFI 149
Query: 185 VGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244
+ P LG+ PA +Y +L+ ASP G YFK G+AP++++V E+ RA PGG G K NY
Sbjct: 150 FATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGGNY 209
Query: 245 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN----IISTPATSGTILA 300
A L A + A G V++LD+V ++ +EE+ NIF + G+ + TP SG++L
Sbjct: 210 AASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSLLP 269
Query: 301 GITRKSIIEIASDCGFQV 318
GITR S++++A D GF V
Sbjct: 270 GITRDSLLQLAIDAGFAV 287
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 144/255 (56%), Gaps = 5/255 (1%)
Query: 61 MDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
+DW LGF D Y + ++ G L+ +I L+ S L+YGQ FEG+KAYR
Sbjct: 24 IDWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYR 83
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGK-GSLY 179
DG + LFRPDQNA R++ R+ MP S +QFIDA Q AN+ ++PP G GSLY
Sbjct: 84 CADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLY 143
Query: 180 IRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVK 239
+RP ++G G +G+ APE+ F VF PVG YFK GL P N ++ ++ RA P G G K
Sbjct: 144 LRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTN-FITSDYDRAAPHGTGAAK 202
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL--KGNIISTPATSGT 297
NYA L AK R F+DV+YLD +EE + N F + G TP S +
Sbjct: 203 VGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTP-QSPS 261
Query: 298 ILAGITRKSIIEIAS 312
IL IT+ S++ +A
Sbjct: 262 ILPSITKYSLLWLAE 276
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 139/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+C+PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 141/265 (53%), Gaps = 9/265 (3%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 43 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 102
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 103 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 162
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 163 RPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 222
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 294
NY L A A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 223 MGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 281
Query: 295 SGTILAGITRKSIIEIASDCG-FQV 318
G IL G+TR+ I+++A G F+V
Sbjct: 282 DGIILPGVTRRCILDLAHQWGEFKV 306
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 138/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SLY+RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 145 bits (365), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 140/265 (52%), Gaps = 9/265 (3%)
Query: 62 DWDNLGFGLTPADYMYTMKCSNDY-FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYR 120
D +NL FG D+M T++ S+++ +EK + + L P S L+Y LFEG+KA+R
Sbjct: 23 DPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFR 82
Query: 121 KEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYI 180
D ++ LF+P+ N R+ A R +P ++ ++ ++Q ++ WVP SLYI
Sbjct: 83 GVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYI 142
Query: 181 RPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVK 239
RP +G+ P LG+ + V SPVG YF G P++L+ ++ RA GG G K
Sbjct: 143 RPAFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCK 202
Query: 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPAT 294
NY L A + G VL+L + + + EV + N+F+ N ++TP
Sbjct: 203 MGGNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPL 261
Query: 295 SGTILAGITRKSIIEIASDCG-FQV 318
G IL G+TR+ I+++A G F+V
Sbjct: 262 DGIILPGVTRRCILDLAHQWGEFKV 286
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 137/258 (53%), Gaps = 7/258 (2%)
Query: 64 DNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKED 123
+ L FG T D+M ++ ++ + + R+ + + L P+S L+Y LFEGMKA++ +D
Sbjct: 26 EPLVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKD 85
Query: 124 GQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPL 183
Q+ LFRP N R+ A R+ +PS + ++ +++ +K WVP SL +RP+
Sbjct: 86 QQVRLFRPWLNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPV 145
Query: 184 LVGSGPILGLAPAPEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242
L+G+ P LG++ V PVG YF G + P++L + F RA GG G K
Sbjct: 146 LIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGN-----IISTPATSGT 297
NY P + A RG VL+L + + L EV + NIF+ + + TP +G
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDHQ-LTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 298 ILAGITRKSIIEIASDCG 315
IL G+ R+S++++A G
Sbjct: 265 ILPGVVRQSLLDMAQTWG 282
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 76 MYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNA 135
M T K +F G + R+ ++ S L+YG +FEG++ Y G +V FR ++
Sbjct: 1 MTTKKADYIWF-NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHM 58
Query: 136 IRLQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLA 194
RL A+ P S SID+ ++A + N S YIRPL+ +G+
Sbjct: 59 QRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVN 111
Query: 195 PAPEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKA 250
P Y+ ++ A P G Y E L + ++RA P KA NY L
Sbjct: 112 PPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLV 171
Query: 251 ISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEI 310
S A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++
Sbjct: 172 GSEARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKL 229
Query: 311 ASDCGFQVRYPLL 323
A + G +VR +L
Sbjct: 230 AKELGIEVREQVL 242
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 15/251 (5%)
Query: 78 TMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIR 137
T K ++ + G + R+ ++ S L+YG +FEG++ Y G +V FR ++ R
Sbjct: 1 TTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQR 59
Query: 138 LQTGAERMCMP-SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA 196
L A+ P S SID+ ++A + N S YIRPL+ +G+ P
Sbjct: 60 LHDSAKIYRFPVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPP 112
Query: 197 PEYT--FLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGA-GGVKAISNYAPVLKAIS 252
Y+ ++ A P G Y E L + ++RA P KA NY L S
Sbjct: 113 AGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGS 172
Query: 253 RAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIAS 312
A+ G+ + + LD VN + E + N+F +K ++ TP + + L GITR +II++A
Sbjct: 173 EARRHGYQEGIALD-VNGY-ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 230
Query: 313 DCGFQVRYPLL 323
+ G +VR +L
Sbjct: 231 ELGIEVREQVL 241
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 12/233 (5%)
Query: 89 GRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMP 148
G+L + ++ + L+YG G+FEG++AY+ DG +FR ++ RL A+ M
Sbjct: 35 GKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMD 94
Query: 149 SPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFAS-P 207
P + ++A ++ + + S Y+RP++ LG++ + A+ P
Sbjct: 95 VPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWP 148
Query: 208 VGNYF-KEGLAPLNLYVEDEFHRATPG-GAGGVKAISNYAPVLKAISRAKNRGFSDVLYL 265
G Y +EGLA F R KA Y + A A G+ + L L
Sbjct: 149 WGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLL 208
Query: 266 DSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQV 318
D + E S N F++ + TP + + L GITR ++I +A + G +V
Sbjct: 209 DV--DGYVSEGSGENFFLVNRGKLYTPDLA-SCLDGITRDTVITLAKEAGIEV 258
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQ 161
S L+YG +FEG++AY G +FR ++ R A+ + M P + ++ +A+K+
Sbjct: 26 SHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKE 84
Query: 162 TALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPE--YTFLVFASPVGNYF-KEGLAP 218
N G S YIRPL LG+ P P +V A G Y +E +
Sbjct: 85 VVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRK 137
Query: 219 LNLYVEDEFHR----ATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLE 274
+ + R PG A K NY A A G + L LD + +
Sbjct: 138 GARLITSSWARFPANVMPGKA---KVGGNYVNSALAKMEAVAAGADEALLLD--EEGYVA 192
Query: 275 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
E S N+F ++ +I S L GITR S+I IA D G++V+
Sbjct: 193 EGSGENLFFVRDGVIYALEHS-VNLEGITRDSVIRIAKDLGYEVQ 236
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGI 302
NY + A +A G D L+ ++ N ++ E + N+F+++ NI+ TP IL GI
Sbjct: 144 NYLEAIIAQRQAIAVGADDALFFNTEN--HVTETTCANLFLIENNILYTPRVEDGILPGI 201
Query: 303 TRKSII 308
TR +I
Sbjct: 202 TRARLI 207
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + IL GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + IL GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + IL GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ K SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNTVTKG----SSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + IL GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 255 KNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDC 314
K+ GF DV++ D + E ++ + KG+ I TP+ G IL G T+ ++ A++
Sbjct: 201 KSNGFDDVIFTDG---DRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 315 GFQVR 319
G++ +
Sbjct: 258 GWRCK 262
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + E SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTEGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + I GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMIAKGITRDVVIACANEINMPVK 221
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 26/217 (11%)
Query: 108 YGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALAN 166
+G G++E +K Y E +F +++ RL AE++ + P + D+F + + N
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 167 KRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPL-NLY--V 223
+ G +Y + + G+ P P ++ Y KE PL NL V
Sbjct: 81 EL-----NTGHIYFQ-VTRGTSPRAHQFPENTVKPVIIG-----YTKENPRPLENLEKGV 129
Query: 224 EDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRG-FSDVLYLDSVNKKNLEEVSSCNIF 282
+ F +K+++ VL A A +G + +L+ ++ + SS N+F
Sbjct: 130 KATFVEDIRWLRCDIKSLNLLGAVL-AKQEAHEKGCYEAILHRNNT----VTSGSSSNVF 184
Query: 283 ILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319
+K I+ T + IL GITR +I A++ V+
Sbjct: 185 GIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 236 GGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATS 295
G+K ++ VL S + + L LDS + + E + N+F KGN++ TP
Sbjct: 137 AGIKHLNRLEQVLIR-SHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLD 193
Query: 296 GTILAGITRKSIIEIASDCGFQV 318
+ GI R+ I + + +Q+
Sbjct: 194 QAGVNGIMRQFCIRLLAQSSYQL 216
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 275 EVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIA 311
E S N+F++K + TP+ IL GITR+++I++A
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLA 212
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 189 PILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGV 238
PI G+ P Y L P+G + + P VEDE + GG GV
Sbjct: 2 PIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGV 51
>pdb|3MPU|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|C Chain C, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|E Chain E, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3NPM|A Chain A, Crystal Structure Of The C47aA241C DISULFIDE-Linked C6
Aspartate Transcarbamoylase Enzyme
Length = 310
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 261 DVLYLDSVNKKNLEEVSSCNI---FILKGNIISTPATSGTILAGITRKSIIEIASDC 314
D+LY+ V K+ L+ CN+ F+L+ + + + +L + R + EIA+D
Sbjct: 223 DILYMTRVQKERLDPSEYCNVKAQFVLRASDLHNAKANMKVLHPLPR--VDEIATDV 277
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 235 AGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST--- 291
A VK IS YA + N+ F+D L + + N + E SC F+ +++ +
Sbjct: 15 APAVKKISQYACQRRTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPF 74
Query: 292 PATSGTILAGI-----TRKSIIE 309
P TS GI KSIIE
Sbjct: 75 PITSMKDTEGIPCLGDKVKSIIE 97
>pdb|1J4T|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|E Chain E, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|F Chain F, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|G Chain G, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4T|H Chain H, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 2)
pdb|1J4U|A Chain A, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|B Chain B, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|C Chain C, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
pdb|1J4U|D Chain D, Structure Of Artocarpin Complexed With Me-Alpha-Mannose
Length = 149
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1J4S|A Chain A, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|B Chain B, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|C Chain C, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
pdb|1J4S|D Chain D, Structure Of Artocarpin: A Lectin With Mannose Specificity
(Form 1)
Length = 149
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBP|A Chain A, Crystal Structure Of Artocarpin-Mannopentose Complex
pdb|1VBP|B Chain B, Crystal Structure Of Artocarpin-Mannopentose Complex
Length = 149
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
>pdb|1VBO|A Chain A, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|B Chain B, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|C Chain C, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|D Chain D, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|E Chain E, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|F Chain F, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|G Chain G, Crystal Structure Of Artocarpin-Mannotriose Complex
pdb|1VBO|H Chain H, Crystal Structure Of Artocarpin-Mannotriose Complex
Length = 149
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 219 LNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSS 278
+ L DEF + G G A++ PV+++++ N+G + Y D EE +
Sbjct: 67 IELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGD-------EEGTY 119
Query: 279 CNIFILKGNIISTPATSGTILAGI 302
N+ I G I+ +G +L I
Sbjct: 120 FNLPIENGLIVGFKGRTGDLLDAI 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,131,399
Number of Sequences: 62578
Number of extensions: 445041
Number of successful extensions: 984
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 34
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)