Query 020259
Match_columns 328
No_of_seqs 205 out of 2144
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:18:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01488 Uba3_RUB Ubiquitin act 100.0 1.2E-61 2.6E-66 444.3 27.1 274 42-320 1-274 (291)
2 KOG2015 NEDD8-activating compl 100.0 3E-60 6.6E-65 424.9 25.4 310 7-320 8-318 (422)
3 KOG2014 SMT3/SUMO-activating c 100.0 3E-56 6.4E-61 396.9 18.2 291 18-326 10-328 (331)
4 cd01484 E1-2_like Ubiquitin ac 100.0 6E-54 1.3E-58 383.6 25.1 231 42-298 1-234 (234)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 5.7E-53 1.2E-57 390.8 24.2 256 42-312 1-285 (312)
6 cd01493 APPBP1_RUB Ubiquitin a 100.0 3.6E-51 7.8E-56 393.8 26.3 157 20-190 1-160 (425)
7 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.9E-52 1.1E-56 380.3 13.3 272 21-320 1-282 (286)
8 TIGR01408 Ube1 ubiquitin-activ 100.0 1.3E-50 2.7E-55 423.2 23.7 205 7-227 373-601 (1008)
9 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.5E-48 5.4E-53 372.5 27.3 249 42-305 1-345 (435)
10 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.3E-47 2.9E-52 335.8 20.2 195 20-323 2-196 (197)
11 cd00757 ThiF_MoeB_HesA_family 100.0 1.4E-46 3.1E-51 337.2 23.4 224 21-326 1-228 (228)
12 KOG2013 SMT3/SUMO-activating c 100.0 6.9E-48 1.5E-52 360.7 15.3 267 32-314 5-415 (603)
13 PRK08223 hypothetical protein; 100.0 3.1E-46 6.8E-51 340.3 22.3 240 18-323 6-261 (287)
14 PRK05690 molybdopterin biosynt 100.0 2.7E-46 5.9E-51 338.2 21.8 225 19-326 10-239 (245)
15 TIGR01408 Ube1 ubiquitin-activ 100.0 5.5E-46 1.2E-50 388.4 26.9 284 19-321 4-385 (1008)
16 PRK08328 hypothetical protein; 100.0 5.9E-46 1.3E-50 333.3 21.1 221 20-326 8-231 (231)
17 PRK05597 molybdopterin biosynt 100.0 7.2E-46 1.6E-50 352.2 22.4 228 18-326 5-236 (355)
18 cd01485 E1-1_like Ubiquitin ac 100.0 1.3E-45 2.7E-50 323.8 21.4 191 21-322 1-196 (198)
19 PRK07411 hypothetical protein; 100.0 1.1E-45 2.4E-50 354.8 22.8 227 19-326 16-246 (390)
20 TIGR02355 moeB molybdopterin s 100.0 4.9E-45 1.1E-49 328.7 23.3 224 20-326 3-231 (240)
21 PRK05600 thiamine biosynthesis 100.0 7.9E-45 1.7E-49 346.0 22.8 227 19-326 19-252 (370)
22 TIGR02356 adenyl_thiF thiazole 100.0 6E-45 1.3E-49 320.7 20.2 165 21-199 1-169 (202)
23 KOG2016 NEDD8-activating compl 100.0 3.7E-45 8.1E-50 339.4 16.5 290 18-326 6-523 (523)
24 PRK07878 molybdopterin biosynt 100.0 2.9E-44 6.4E-49 345.6 23.3 227 19-326 20-254 (392)
25 KOG2012 Ubiquitin activating e 100.0 2.9E-45 6.2E-50 360.6 15.5 282 7-304 383-879 (1013)
26 PRK07688 thiamine/molybdopteri 100.0 1.6E-42 3.5E-47 326.8 22.9 224 19-325 2-231 (339)
27 PRK12475 thiamine/molybdopteri 100.0 1.3E-42 2.7E-47 327.4 21.8 225 19-326 2-232 (338)
28 PRK08762 molybdopterin biosynt 100.0 1.6E-41 3.4E-46 325.6 22.0 225 20-325 114-346 (376)
29 KOG2012 Ubiquitin activating e 100.0 1.6E-39 3.4E-44 320.2 18.0 286 18-321 16-395 (1013)
30 KOG2017 Molybdopterin synthase 100.0 7.8E-40 1.7E-44 296.3 11.7 226 18-324 43-272 (427)
31 COG0476 ThiF Dinucleotide-util 100.0 3.5E-37 7.5E-42 280.9 19.7 222 18-319 7-234 (254)
32 PRK14852 hypothetical protein; 100.0 2.1E-37 4.5E-42 317.6 18.1 248 18-321 311-563 (989)
33 PRK14851 hypothetical protein; 100.0 1.6E-36 3.5E-41 306.8 18.3 251 14-320 18-273 (679)
34 PRK08644 thiamine biosynthesis 100.0 5.5E-35 1.2E-39 258.8 16.8 151 22-187 11-163 (212)
35 PRK07877 hypothetical protein; 100.0 2.2E-34 4.8E-39 292.0 19.8 181 4-202 62-257 (722)
36 TIGR03603 cyclo_dehy_ocin bact 100.0 6.4E-33 1.4E-37 259.1 16.3 224 20-325 53-284 (318)
37 PF00899 ThiF: ThiF family; I 100.0 1.8E-31 3.9E-36 220.5 14.8 132 40-184 2-134 (135)
38 PRK15116 sulfur acceptor prote 100.0 6.3E-32 1.4E-36 245.5 12.6 142 19-174 10-153 (268)
39 TIGR01381 E1_like_apg7 E1-like 100.0 2.3E-30 5E-35 255.6 19.4 155 27-197 327-520 (664)
40 PTZ00245 ubiquitin activating 100.0 5.1E-31 1.1E-35 232.3 12.9 117 19-142 6-122 (287)
41 cd01487 E1_ThiF_like E1_ThiF_l 100.0 4.6E-30 9.9E-35 220.8 16.5 142 42-196 1-145 (174)
42 cd01483 E1_enzyme_family Super 100.0 8.8E-30 1.9E-34 212.3 14.9 132 42-186 1-133 (143)
43 cd00755 YgdL_like Family of ac 100.0 5.3E-30 1.1E-34 229.0 14.5 136 29-178 1-138 (231)
44 TIGR02354 thiF_fam2 thiamine b 100.0 5.9E-29 1.3E-33 218.2 18.9 122 28-151 10-132 (200)
45 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 6.2E-29 1.3E-33 222.8 15.8 182 39-234 10-220 (244)
46 cd01486 Apg7 Apg7 is an E1-lik 100.0 3.3E-28 7.1E-33 222.1 14.7 142 42-197 1-181 (307)
47 COG1179 Dinucleotide-utilizing 100.0 1.4E-27 3E-32 208.7 15.4 143 18-174 9-153 (263)
48 KOG2336 Molybdopterin biosynth 99.9 7.4E-26 1.6E-30 200.4 13.5 231 18-326 58-306 (422)
49 PRK06153 hypothetical protein; 99.9 3E-25 6.6E-30 208.6 16.3 145 6-175 152-299 (393)
50 KOG2018 Predicted dinucleotide 99.9 4.1E-23 8.9E-28 185.5 7.1 251 20-311 55-314 (430)
51 TIGR03693 ocin_ThiF_like putat 99.8 5.4E-18 1.2E-22 166.7 12.6 189 35-321 125-321 (637)
52 KOG2337 Ubiquitin activating E 99.6 7.1E-15 1.5E-19 140.2 10.0 114 35-150 336-470 (669)
53 PF02134 UBACT: Repeat in ubiq 99.1 2.1E-10 4.5E-15 82.7 6.7 67 238-304 1-67 (67)
54 COG4015 Predicted dinucleotide 98.6 5.7E-07 1.2E-11 74.6 9.7 127 36-181 14-146 (217)
55 PF05237 MoeZ_MoeB: MoeZ/MoeB 98.3 1E-06 2.3E-11 66.4 4.3 47 280-326 24-71 (84)
56 PF01488 Shikimate_DH: Shikima 98.0 2.9E-05 6.3E-10 63.9 8.7 78 36-140 9-86 (135)
57 PRK12549 shikimate 5-dehydroge 98.0 3.1E-05 6.7E-10 71.8 9.8 76 39-138 126-201 (284)
58 TIGR03882 cyclo_dehyd_2 bacter 97.9 4.8E-05 1.1E-09 66.5 8.6 96 30-196 96-193 (193)
59 COG1748 LYS9 Saccharopine dehy 97.9 6.9E-05 1.5E-09 71.9 10.1 85 41-150 2-88 (389)
60 PF10585 UBA_e1_thiolCys: Ubiq 97.8 9.1E-06 2E-10 53.6 1.6 42 189-233 2-43 (45)
61 PRK06718 precorrin-2 dehydroge 97.7 0.00045 9.8E-09 60.8 11.0 84 37-150 8-91 (202)
62 TIGR01470 cysG_Nterm siroheme 97.6 0.00088 1.9E-08 59.1 11.0 94 37-173 7-100 (205)
63 PF13241 NAD_binding_7: Putati 97.4 0.00036 7.8E-09 54.6 6.2 86 37-172 5-90 (103)
64 PRK06719 precorrin-2 dehydroge 97.3 0.0015 3.3E-08 55.1 9.3 81 37-150 11-91 (157)
65 PRK12548 shikimate 5-dehydroge 97.3 0.0013 2.9E-08 61.1 9.5 82 39-138 125-208 (289)
66 PRK14027 quinate/shikimate deh 97.3 0.0012 2.6E-08 61.2 8.8 78 39-138 126-203 (283)
67 TIGR01809 Shik-DH-AROM shikima 97.2 0.0014 3.1E-08 60.7 8.0 77 39-139 124-200 (282)
68 PRK05562 precorrin-2 dehydroge 97.2 0.0052 1.1E-07 54.8 10.9 83 39-150 24-106 (223)
69 COG0373 HemA Glutamyl-tRNA red 97.1 0.0011 2.4E-08 64.1 6.5 75 37-141 176-250 (414)
70 COG0169 AroE Shikimate 5-dehyd 97.1 0.0026 5.7E-08 58.8 8.7 75 40-139 126-200 (283)
71 PF03435 Saccharop_dh: Sacchar 97.1 0.0025 5.3E-08 61.6 8.7 84 43-150 1-87 (386)
72 PRK00258 aroE shikimate 5-dehy 97.0 0.0028 6.2E-08 58.5 8.4 75 37-139 121-195 (278)
73 PRK04148 hypothetical protein; 97.0 0.0094 2E-07 48.8 10.2 92 40-173 17-108 (134)
74 PRK12749 quinate/shikimate deh 97.0 0.0035 7.6E-08 58.2 8.5 81 39-138 123-205 (288)
75 PRK13940 glutamyl-tRNA reducta 96.9 0.0019 4E-08 63.1 6.7 76 37-141 179-254 (414)
76 PF00056 Ldh_1_N: lactate/mala 96.8 0.0058 1.3E-07 50.6 7.7 74 42-139 2-79 (141)
77 COG0569 TrkA K+ transport syst 96.8 0.0099 2.1E-07 53.2 9.5 96 42-175 2-100 (225)
78 PF03446 NAD_binding_2: NAD bi 96.7 0.0097 2.1E-07 50.3 8.4 32 41-73 2-33 (163)
79 cd01065 NAD_bind_Shikimate_DH 96.6 0.012 2.6E-07 48.8 8.5 74 39-139 18-91 (155)
80 cd05291 HicDH_like L-2-hydroxy 96.6 0.0087 1.9E-07 56.1 8.3 73 41-139 1-78 (306)
81 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.013 2.8E-07 50.9 8.4 82 37-140 26-108 (194)
82 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.0065 1.4E-07 51.9 5.9 34 37-72 42-76 (168)
83 cd05213 NAD_bind_Glutamyl_tRNA 96.4 0.017 3.7E-07 54.2 9.2 75 39-142 177-251 (311)
84 PRK00066 ldh L-lactate dehydro 96.4 0.013 2.8E-07 55.2 8.0 75 40-138 6-82 (315)
85 PF03807 F420_oxidored: NADP o 96.2 0.03 6.5E-07 42.6 8.0 78 42-149 1-81 (96)
86 COG1648 CysG Siroheme synthase 96.2 0.015 3.3E-07 51.4 7.2 84 37-150 10-93 (210)
87 cd05290 LDH_3 A subgroup of L- 96.2 0.032 6.9E-07 52.3 9.6 73 42-138 1-77 (307)
88 PF00070 Pyr_redox: Pyridine n 96.2 0.02 4.4E-07 42.2 6.5 58 42-113 1-58 (80)
89 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.02 4.4E-07 48.1 7.3 88 42-150 1-90 (157)
90 PRK12550 shikimate 5-dehydroge 96.1 0.022 4.8E-07 52.4 8.0 33 40-72 122-154 (272)
91 PLN00203 glutamyl-tRNA reducta 96.1 0.014 3E-07 58.6 7.0 77 39-141 265-341 (519)
92 TIGR01035 hemA glutamyl-tRNA r 96.1 0.0097 2.1E-07 58.2 5.7 75 37-141 178-252 (417)
93 PRK10637 cysG siroheme synthas 96.1 0.055 1.2E-06 53.6 11.0 85 37-151 10-94 (457)
94 COG1086 Predicted nucleoside-d 96.1 0.044 9.5E-07 54.8 10.1 88 30-137 241-333 (588)
95 TIGR02992 ectoine_eutC ectoine 96.1 0.04 8.8E-07 52.1 9.6 76 40-140 129-205 (326)
96 PRK07066 3-hydroxybutyryl-CoA 96.0 0.029 6.4E-07 52.9 8.4 33 41-74 8-40 (321)
97 PRK06141 ornithine cyclodeamin 96.0 0.038 8.2E-07 52.0 8.9 76 39-140 124-200 (314)
98 cd00300 LDH_like L-lactate deh 96.0 0.035 7.6E-07 51.9 8.6 72 43-139 1-76 (300)
99 PF01118 Semialdhyde_dh: Semia 96.0 0.073 1.6E-06 42.6 9.3 95 42-174 1-97 (121)
100 PRK09599 6-phosphogluconate de 95.9 0.022 4.8E-07 53.1 7.1 115 42-178 2-123 (301)
101 PRK14106 murD UDP-N-acetylmura 95.9 0.038 8.3E-07 54.4 9.0 35 39-74 4-38 (450)
102 PRK00045 hemA glutamyl-tRNA re 95.9 0.019 4.1E-07 56.4 6.6 75 37-141 180-254 (423)
103 PTZ00082 L-lactate dehydrogena 95.9 0.049 1.1E-06 51.4 9.2 34 39-72 5-38 (321)
104 PRK07340 ornithine cyclodeamin 95.8 0.055 1.2E-06 50.7 9.1 74 39-139 124-198 (304)
105 cd05311 NAD_bind_2_malic_enz N 95.8 0.014 3E-07 52.3 4.8 38 36-74 22-61 (226)
106 PTZ00117 malate dehydrogenase; 95.7 0.04 8.6E-07 52.0 7.9 35 39-73 4-38 (319)
107 PF02719 Polysacc_synt_2: Poly 95.7 0.027 5.8E-07 52.3 6.5 77 43-138 1-86 (293)
108 PF10727 Rossmann-like: Rossma 95.7 0.054 1.2E-06 44.0 7.5 80 40-150 10-89 (127)
109 cd05293 LDH_1 A subgroup of L- 95.7 0.043 9.3E-07 51.6 8.0 74 40-138 3-80 (312)
110 PRK06130 3-hydroxybutyryl-CoA 95.7 0.079 1.7E-06 49.5 9.7 32 41-73 5-36 (311)
111 KOG4169 15-hydroxyprostaglandi 95.6 0.054 1.2E-06 48.2 7.7 77 39-136 4-90 (261)
112 PLN02602 lactate dehydrogenase 95.6 0.059 1.3E-06 51.5 8.6 73 41-138 38-114 (350)
113 TIGR00507 aroE shikimate 5-deh 95.6 0.055 1.2E-06 49.7 8.0 73 39-139 116-188 (270)
114 PRK14619 NAD(P)H-dependent gly 95.5 0.062 1.3E-06 50.3 8.2 33 40-73 4-36 (308)
115 PRK07502 cyclohexadienyl dehyd 95.4 0.15 3.2E-06 47.7 10.5 34 40-73 6-40 (307)
116 PLN02350 phosphogluconate dehy 95.3 0.12 2.6E-06 51.6 10.1 121 40-178 6-136 (493)
117 PRK07819 3-hydroxybutyryl-CoA 95.3 0.046 1E-06 50.7 6.8 33 41-74 6-38 (286)
118 PRK00676 hemA glutamyl-tRNA re 95.3 0.034 7.4E-07 52.7 5.8 36 37-73 172-207 (338)
119 PRK15469 ghrA bifunctional gly 95.3 0.094 2E-06 49.3 8.6 80 35-150 132-212 (312)
120 PRK08618 ornithine cyclodeamin 95.3 0.11 2.5E-06 49.0 9.3 77 40-141 127-204 (325)
121 PRK13403 ketol-acid reductoiso 95.2 0.24 5.1E-06 46.7 10.9 79 35-148 12-90 (335)
122 PRK08293 3-hydroxybutyryl-CoA 95.2 0.044 9.5E-07 50.8 6.1 32 41-73 4-35 (287)
123 PRK08291 ectoine utilization p 95.1 0.15 3.2E-06 48.4 9.6 76 40-140 132-208 (330)
124 PRK01438 murD UDP-N-acetylmura 95.1 0.11 2.3E-06 51.7 9.1 44 29-73 5-48 (480)
125 PRK11880 pyrroline-5-carboxyla 95.1 0.19 4.2E-06 45.8 10.1 79 41-150 3-83 (267)
126 PTZ00142 6-phosphogluconate de 95.0 0.037 7.9E-07 55.0 5.4 34 41-75 2-35 (470)
127 PLN02819 lysine-ketoglutarate 95.0 0.15 3.2E-06 55.2 10.1 24 40-63 569-592 (1042)
128 cd05312 NAD_bind_1_malic_enz N 95.0 0.19 4.1E-06 46.3 9.5 40 35-75 21-70 (279)
129 PRK05708 2-dehydropantoate 2-r 95.0 0.17 3.7E-06 47.4 9.5 33 40-73 2-34 (305)
130 PF01113 DapB_N: Dihydrodipico 94.9 0.14 3E-06 41.3 7.7 96 42-175 2-99 (124)
131 PRK00094 gpsA NAD(P)H-dependen 94.9 0.12 2.5E-06 48.5 8.3 32 42-74 3-34 (325)
132 KOG0069 Glyoxylate/hydroxypyru 94.9 0.13 2.9E-06 48.5 8.5 83 35-152 158-241 (336)
133 cd05292 LDH_2 A subgroup of L- 94.9 0.11 2.5E-06 48.6 8.1 31 42-72 2-33 (308)
134 PRK07680 late competence prote 94.9 0.15 3.2E-06 46.9 8.6 79 42-150 2-83 (273)
135 PF02254 TrkA_N: TrkA-N domain 94.9 0.68 1.5E-05 36.2 11.4 81 43-151 1-84 (116)
136 COG1893 ApbA Ketopantoate redu 94.9 0.14 3.1E-06 48.0 8.6 83 41-150 1-88 (307)
137 TIGR00873 gnd 6-phosphoglucona 94.8 0.082 1.8E-06 52.5 7.2 120 42-178 1-127 (467)
138 TIGR00872 gnd_rel 6-phosphoglu 94.8 0.074 1.6E-06 49.6 6.5 32 42-74 2-33 (298)
139 PRK12480 D-lactate dehydrogena 94.8 0.33 7.1E-06 46.1 10.8 37 35-73 142-178 (330)
140 cd05191 NAD_bind_amino_acid_DH 94.7 0.065 1.4E-06 40.2 4.9 38 37-75 21-58 (86)
141 PRK05854 short chain dehydroge 94.7 0.2 4.3E-06 46.9 9.2 64 37-121 12-76 (313)
142 PRK06522 2-dehydropantoate 2-r 94.6 0.21 4.4E-06 46.3 9.1 31 42-73 2-32 (304)
143 PRK07063 short chain dehydroge 94.6 0.26 5.6E-06 44.3 9.5 80 37-137 5-94 (260)
144 PF02558 ApbA: Ketopantoate re 94.6 0.33 7.2E-06 40.0 9.4 81 43-150 1-88 (151)
145 PRK06197 short chain dehydroge 94.6 0.18 3.8E-06 46.9 8.5 35 36-72 13-48 (306)
146 PRK12491 pyrroline-5-carboxyla 94.6 0.22 4.8E-06 45.8 9.0 80 40-150 2-84 (272)
147 PRK14192 bifunctional 5,10-met 94.6 0.093 2E-06 48.6 6.5 33 37-71 157-190 (283)
148 PRK05808 3-hydroxybutyryl-CoA 94.5 0.15 3.4E-06 46.9 8.0 33 41-74 4-36 (282)
149 PRK03562 glutathione-regulated 94.5 0.3 6.4E-06 50.4 10.7 84 40-151 400-486 (621)
150 PRK07634 pyrroline-5-carboxyla 94.5 0.34 7.4E-06 43.4 10.0 82 39-150 3-87 (245)
151 PRK07417 arogenate dehydrogena 94.4 0.17 3.7E-06 46.6 7.9 31 42-73 2-32 (279)
152 PRK05476 S-adenosyl-L-homocyst 94.4 0.37 8E-06 47.2 10.5 35 39-74 211-245 (425)
153 TIGR01759 MalateDH-SF1 malate 94.4 0.12 2.5E-06 49.0 6.8 77 41-138 4-88 (323)
154 PRK14618 NAD(P)H-dependent gly 94.4 0.15 3.2E-06 48.2 7.5 32 41-73 5-36 (328)
155 PRK06928 pyrroline-5-carboxyla 94.4 0.43 9.2E-06 44.0 10.4 80 42-150 3-85 (277)
156 PRK10537 voltage-gated potassi 94.4 0.19 4.1E-06 48.8 8.4 93 40-136 240-356 (393)
157 COG0039 Mdh Malate/lactate deh 94.4 0.096 2.1E-06 49.1 6.1 31 41-71 1-32 (313)
158 PRK09496 trkA potassium transp 94.3 0.24 5.3E-06 48.6 9.3 86 39-150 230-318 (453)
159 PRK11559 garR tartronate semia 94.3 0.33 7.2E-06 44.9 9.7 32 41-73 3-34 (296)
160 PRK06476 pyrroline-5-carboxyla 94.3 0.37 8E-06 43.8 9.7 77 42-148 2-80 (258)
161 PRK07679 pyrroline-5-carboxyla 94.3 0.39 8.6E-06 44.2 10.0 81 40-150 3-86 (279)
162 PTZ00345 glycerol-3-phosphate 94.3 0.19 4.2E-06 48.2 8.1 90 40-150 11-114 (365)
163 PRK11199 tyrA bifunctional cho 94.2 0.2 4.4E-06 48.3 8.3 32 41-73 99-131 (374)
164 PRK06223 malate dehydrogenase; 94.2 0.27 5.8E-06 45.9 8.8 32 41-72 3-34 (307)
165 PRK05225 ketol-acid reductoiso 94.2 0.22 4.8E-06 48.9 8.3 43 24-68 17-63 (487)
166 PRK09242 tropinone reductase; 94.2 0.45 9.7E-06 42.7 10.0 81 37-138 7-97 (257)
167 KOG0409 Predicted dehydrogenas 94.1 0.2 4.3E-06 46.4 7.5 31 40-71 35-65 (327)
168 PRK08251 short chain dehydroge 94.1 0.49 1.1E-05 42.1 10.1 78 40-137 2-89 (248)
169 PRK07062 short chain dehydroge 94.1 0.44 9.5E-06 43.0 9.9 80 37-137 6-95 (265)
170 TIGR01915 npdG NADPH-dependent 94.1 0.6 1.3E-05 41.4 10.5 84 42-149 2-88 (219)
171 PTZ00325 malate dehydrogenase; 94.1 0.16 3.5E-06 48.0 7.1 34 39-72 7-42 (321)
172 cd00650 LDH_MDH_like NAD-depen 94.0 0.17 3.7E-06 46.2 7.0 72 43-138 1-79 (263)
173 TIGR01505 tartro_sem_red 2-hyd 94.0 0.25 5.4E-06 45.8 8.2 31 42-73 1-31 (291)
174 PRK12921 2-dehydropantoate 2-r 94.0 0.34 7.3E-06 44.9 9.1 30 42-72 2-31 (305)
175 PRK07531 bifunctional 3-hydrox 94.0 0.56 1.2E-05 47.0 11.1 33 41-74 5-37 (495)
176 PRK03659 glutathione-regulated 93.9 0.46 1E-05 48.8 10.7 84 40-151 400-486 (601)
177 PRK09496 trkA potassium transp 93.8 0.49 1.1E-05 46.4 10.4 31 42-73 2-32 (453)
178 PRK14620 NAD(P)H-dependent gly 93.8 0.45 9.8E-06 44.8 9.7 32 42-74 2-33 (326)
179 cd01339 LDH-like_MDH L-lactate 93.8 0.31 6.8E-06 45.4 8.5 31 43-73 1-31 (300)
180 PF00106 adh_short: short chai 93.7 0.39 8.5E-06 39.8 8.2 78 42-138 2-89 (167)
181 PRK10669 putative cation:proto 93.7 0.57 1.2E-05 47.6 10.7 34 40-74 417-450 (558)
182 PRK08818 prephenate dehydrogen 93.6 0.45 9.7E-06 45.8 9.3 34 39-72 3-37 (370)
183 PRK12826 3-ketoacyl-(acyl-carr 93.6 0.25 5.4E-06 43.8 7.2 34 39-73 5-39 (251)
184 cd01338 MDH_choloroplast_like 93.6 0.12 2.6E-06 48.8 5.3 32 41-72 3-41 (322)
185 PRK09310 aroDE bifunctional 3- 93.6 0.25 5.4E-06 49.3 7.7 33 39-72 331-363 (477)
186 PLN02688 pyrroline-5-carboxyla 93.5 0.38 8.1E-06 43.8 8.4 77 42-150 2-82 (266)
187 PRK13302 putative L-aspartate 93.5 0.51 1.1E-05 43.4 9.3 32 39-71 5-39 (271)
188 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.5 0.14 3E-06 51.4 5.9 33 40-73 5-37 (503)
189 TIGR01850 argC N-acetyl-gamma- 93.5 0.3 6.6E-06 46.6 7.9 85 42-150 2-89 (346)
190 PRK13304 L-aspartate dehydroge 93.5 0.46 1E-05 43.5 8.9 32 42-73 3-36 (265)
191 TIGR01771 L-LDH-NAD L-lactate 93.4 0.24 5.3E-06 46.2 7.0 68 45-138 1-73 (299)
192 cd01337 MDH_glyoxysomal_mitoch 93.4 0.26 5.5E-06 46.3 7.1 75 42-139 2-78 (310)
193 PRK05875 short chain dehydroge 93.4 0.47 1E-05 43.0 8.8 34 37-72 5-39 (276)
194 cd01075 NAD_bind_Leu_Phe_Val_D 93.3 0.13 2.8E-06 45.1 4.8 35 37-73 26-60 (200)
195 COG2084 MmsB 3-hydroxyisobutyr 93.3 0.52 1.1E-05 43.7 8.8 33 41-74 1-33 (286)
196 PRK12771 putative glutamate sy 93.3 0.55 1.2E-05 47.8 9.9 35 39-74 136-170 (564)
197 PRK15461 NADH-dependent gamma- 93.2 0.34 7.5E-06 45.1 7.7 33 41-74 2-34 (296)
198 PRK08655 prephenate dehydrogen 93.2 0.76 1.7E-05 45.3 10.5 31 42-73 2-33 (437)
199 TIGR03376 glycerol3P_DH glycer 93.2 0.76 1.7E-05 43.8 10.1 88 42-150 1-103 (342)
200 PRK06046 alanine dehydrogenase 93.2 0.58 1.3E-05 44.2 9.3 74 40-139 129-203 (326)
201 PRK12439 NAD(P)H-dependent gly 93.2 0.5 1.1E-05 44.9 8.9 92 40-150 7-98 (341)
202 cd05296 GH4_P_beta_glucosidase 93.1 0.42 9.1E-06 46.9 8.3 84 42-144 2-92 (419)
203 PRK12490 6-phosphogluconate de 93.1 0.31 6.6E-06 45.4 7.1 32 42-74 2-33 (299)
204 COG0300 DltE Short-chain dehyd 93.1 0.88 1.9E-05 41.7 9.8 78 39-137 5-92 (265)
205 PLN00106 malate dehydrogenase 93.0 0.29 6.3E-06 46.3 6.9 35 40-74 18-54 (323)
206 PRK07574 formate dehydrogenase 93.0 0.47 1E-05 46.0 8.4 82 35-150 188-270 (385)
207 PF03949 Malic_M: Malic enzyme 93.0 0.13 2.8E-06 46.7 4.3 39 35-74 21-69 (255)
208 PRK14175 bifunctional 5,10-met 93.0 0.35 7.6E-06 44.8 7.2 35 36-72 155-190 (286)
209 PRK07831 short chain dehydroge 93.0 0.87 1.9E-05 40.9 9.8 32 39-71 16-49 (262)
210 PF02737 3HCDH_N: 3-hydroxyacy 92.9 0.16 3.5E-06 43.7 4.7 33 42-75 1-33 (180)
211 COG1063 Tdh Threonine dehydrog 92.9 0.81 1.8E-05 43.6 9.9 35 40-74 169-203 (350)
212 PRK09880 L-idonate 5-dehydroge 92.9 0.93 2E-05 42.7 10.3 34 39-72 169-202 (343)
213 PF02826 2-Hacid_dh_C: D-isome 92.9 0.17 3.8E-06 43.3 4.8 38 35-74 32-69 (178)
214 TIGR03026 NDP-sugDHase nucleot 92.8 0.78 1.7E-05 44.7 9.9 40 42-82 2-41 (411)
215 PRK08268 3-hydroxy-acyl-CoA de 92.8 0.15 3.1E-06 51.3 4.8 33 41-74 8-40 (507)
216 cd00704 MDH Malate dehydrogena 92.8 0.15 3.1E-06 48.3 4.5 33 41-73 1-40 (323)
217 TIGR01763 MalateDH_bact malate 92.8 0.43 9.4E-06 44.7 7.7 32 41-72 2-33 (305)
218 PRK12769 putative oxidoreducta 92.8 0.67 1.5E-05 48.1 9.8 34 39-73 326-359 (654)
219 cd05211 NAD_bind_Glu_Leu_Phe_V 92.8 0.17 3.7E-06 45.0 4.7 38 36-74 20-57 (217)
220 TIGR00936 ahcY adenosylhomocys 92.8 1.1 2.4E-05 43.7 10.6 35 39-74 194-228 (406)
221 PRK12384 sorbitol-6-phosphate 92.8 1.1 2.4E-05 40.1 10.2 33 40-73 2-35 (259)
222 PLN03139 formate dehydrogenase 92.7 0.58 1.3E-05 45.3 8.6 82 35-150 195-277 (386)
223 PRK02705 murD UDP-N-acetylmura 92.7 0.78 1.7E-05 45.2 9.8 33 41-74 1-33 (459)
224 PRK07576 short chain dehydroge 92.7 0.34 7.4E-06 43.9 6.7 37 35-73 5-42 (264)
225 TIGR01202 bchC 2-desacetyl-2-h 92.7 0.71 1.5E-05 42.9 9.0 33 40-72 145-177 (308)
226 COG0111 SerA Phosphoglycerate 92.7 0.48 1E-05 44.8 7.8 97 36-177 139-236 (324)
227 PRK00811 spermidine synthase; 92.6 0.96 2.1E-05 41.9 9.7 34 40-74 77-110 (283)
228 TIGR01757 Malate-DH_plant mala 92.6 0.41 8.9E-06 46.3 7.4 77 41-139 45-130 (387)
229 PRK06199 ornithine cyclodeamin 92.6 0.97 2.1E-05 43.7 10.0 76 40-139 155-233 (379)
230 cd01076 NAD_bind_1_Glu_DH NAD( 92.6 0.37 7.9E-06 43.2 6.6 38 35-73 27-64 (227)
231 TIGR02371 ala_DH_arch alanine 92.5 0.75 1.6E-05 43.5 9.0 74 40-139 128-202 (325)
232 PRK05442 malate dehydrogenase; 92.5 0.49 1.1E-05 44.8 7.7 33 40-72 4-43 (326)
233 PLN02780 ketoreductase/ oxidor 92.5 1.1 2.4E-05 42.2 10.0 62 39-120 52-114 (320)
234 PRK00048 dihydrodipicolinate r 92.5 0.86 1.9E-05 41.5 9.1 33 41-73 2-36 (257)
235 PRK06545 prephenate dehydrogen 92.5 0.63 1.4E-05 44.6 8.5 32 41-73 1-32 (359)
236 PRK08217 fabG 3-ketoacyl-(acyl 92.4 0.58 1.3E-05 41.5 7.8 34 39-73 4-38 (253)
237 PTZ00431 pyrroline carboxylate 92.4 0.81 1.8E-05 41.7 8.8 73 40-150 3-78 (260)
238 COG1250 FadB 3-hydroxyacyl-CoA 92.4 0.25 5.3E-06 46.3 5.4 32 41-73 4-35 (307)
239 COG1712 Predicted dinucleotide 92.4 0.84 1.8E-05 40.7 8.3 32 42-74 2-36 (255)
240 COG0240 GpsA Glycerol-3-phosph 92.4 1 2.2E-05 42.5 9.4 88 41-149 2-91 (329)
241 COG1023 Gnd Predicted 6-phosph 92.3 0.38 8.3E-06 43.2 6.2 113 42-177 2-122 (300)
242 PLN03209 translocon at the inn 92.3 2.2 4.8E-05 43.4 12.4 80 39-138 79-168 (576)
243 PLN02852 ferredoxin-NADP+ redu 92.3 0.96 2.1E-05 45.3 9.8 43 39-83 25-69 (491)
244 PRK07814 short chain dehydroge 92.2 0.85 1.8E-05 41.2 8.7 35 37-73 8-43 (263)
245 cd00762 NAD_bind_malic_enz NAD 92.2 0.13 2.8E-06 46.8 3.2 40 35-75 21-70 (254)
246 PF13460 NAD_binding_10: NADH( 92.2 1.5 3.2E-05 37.0 9.7 66 43-138 1-69 (183)
247 PRK06181 short chain dehydroge 92.1 0.9 1.9E-05 40.8 8.7 31 41-72 2-33 (263)
248 cd08230 glucose_DH Glucose deh 92.1 1.2 2.6E-05 42.1 10.0 33 39-72 172-204 (355)
249 PRK07478 short chain dehydroge 92.0 0.88 1.9E-05 40.7 8.5 33 39-72 5-38 (254)
250 PRK08374 homoserine dehydrogen 92.0 1.8 3.9E-05 41.2 10.9 22 40-61 2-23 (336)
251 PRK14982 acyl-ACP reductase; P 91.9 0.23 5E-06 47.2 4.7 37 36-73 152-190 (340)
252 PRK07231 fabG 3-ketoacyl-(acyl 91.9 0.72 1.6E-05 40.9 7.8 34 39-73 4-38 (251)
253 PLN02427 UDP-apiose/xylose syn 91.9 1.4 3E-05 42.3 10.3 37 35-72 10-47 (386)
254 PRK05867 short chain dehydroge 91.8 0.84 1.8E-05 40.8 8.2 33 37-71 7-40 (253)
255 PRK13301 putative L-aspartate 91.8 0.97 2.1E-05 41.4 8.4 101 40-150 2-110 (267)
256 TIGR01373 soxB sarcosine oxida 91.8 0.32 6.9E-06 47.1 5.7 56 24-79 13-70 (407)
257 PRK06949 short chain dehydroge 91.8 1.2 2.5E-05 39.8 9.0 33 39-72 8-41 (258)
258 cd05294 LDH-like_MDH_nadp A la 91.8 0.77 1.7E-05 43.1 8.0 32 42-73 2-35 (309)
259 PRK09186 flagellin modificatio 91.7 1 2.3E-05 40.1 8.7 32 39-71 3-35 (256)
260 PRK05866 short chain dehydroge 91.7 1 2.3E-05 41.6 8.8 36 35-72 36-72 (293)
261 COG1052 LdhA Lactate dehydroge 91.7 0.48 1E-05 44.8 6.6 81 35-152 142-224 (324)
262 PRK01710 murD UDP-N-acetylmura 91.7 1.2 2.5E-05 44.2 9.6 39 34-74 9-47 (458)
263 PRK15059 tartronate semialdehy 91.7 0.81 1.7E-05 42.6 8.0 31 42-73 2-32 (292)
264 PRK12809 putative oxidoreducta 91.6 1.3 2.9E-05 45.8 10.3 96 39-139 309-405 (639)
265 PRK04308 murD UDP-N-acetylmura 91.6 1.4 3E-05 43.4 10.0 35 39-74 4-38 (445)
266 PRK11064 wecC UDP-N-acetyl-D-m 91.6 1.6 3.4E-05 42.7 10.3 36 40-76 3-38 (415)
267 TIGR02853 spore_dpaA dipicolin 91.5 0.29 6.2E-06 45.5 4.8 35 36-72 148-182 (287)
268 TIGR01296 asd_B aspartate-semi 91.5 0.83 1.8E-05 43.5 8.0 81 42-150 1-82 (339)
269 PRK05335 tRNA (uracil-5-)-meth 91.5 0.28 6.1E-06 48.0 4.9 32 40-72 2-33 (436)
270 PLN02253 xanthoxin dehydrogena 91.4 1.2 2.5E-05 40.5 8.8 35 36-72 15-50 (280)
271 PRK09260 3-hydroxybutyryl-CoA 91.4 0.29 6.3E-06 45.3 4.8 33 41-74 2-34 (288)
272 PLN00112 malate dehydrogenase 91.4 0.65 1.4E-05 45.8 7.3 76 40-139 100-186 (444)
273 PRK06194 hypothetical protein; 91.4 1.6 3.4E-05 39.8 9.6 33 39-72 5-38 (287)
274 COG1064 AdhP Zn-dependent alco 91.4 3 6.5E-05 39.6 11.4 35 36-71 163-197 (339)
275 PRK07530 3-hydroxybutyryl-CoA 91.3 0.32 6.8E-06 45.1 4.9 33 40-73 4-36 (292)
276 PRK11790 D-3-phosphoglycerate 91.3 0.8 1.7E-05 44.8 7.9 79 35-151 147-226 (409)
277 PRK14194 bifunctional 5,10-met 91.3 0.5 1.1E-05 44.1 6.1 35 36-72 156-191 (301)
278 TIGR03206 benzo_BadH 2-hydroxy 91.3 1.1 2.5E-05 39.6 8.3 33 39-72 2-35 (250)
279 TIGR03589 PseB UDP-N-acetylglu 91.2 1.1 2.4E-05 42.0 8.5 35 39-73 3-39 (324)
280 PLN02240 UDP-glucose 4-epimera 91.1 2.5 5.5E-05 39.7 11.0 32 39-71 4-36 (352)
281 PRK00436 argC N-acetyl-gamma-g 91.0 1.8 3.9E-05 41.2 9.9 29 41-69 3-32 (343)
282 PTZ00188 adrenodoxin reductase 91.0 2.1 4.6E-05 42.8 10.5 93 40-139 39-136 (506)
283 PRK06172 short chain dehydroge 91.0 0.93 2E-05 40.4 7.5 33 39-72 6-39 (253)
284 PRK12939 short chain dehydroge 91.0 1.5 3.2E-05 38.8 8.8 32 39-71 6-38 (250)
285 PRK11259 solA N-methyltryptoph 90.9 0.34 7.4E-06 46.1 4.9 35 40-75 3-37 (376)
286 PRK11908 NAD-dependent epimera 90.9 3.3 7.1E-05 39.0 11.6 30 42-72 3-34 (347)
287 PRK06138 short chain dehydroge 90.9 1.4 3.1E-05 39.0 8.7 33 39-72 4-37 (252)
288 PRK06567 putative bifunctional 90.9 1.9 4.1E-05 46.5 10.7 40 39-79 382-421 (1028)
289 PLN02383 aspartate semialdehyd 90.9 1.4 3.1E-05 42.0 8.9 82 39-150 6-90 (344)
290 PRK12814 putative NADPH-depend 90.9 1.3 2.9E-05 45.9 9.4 34 40-74 193-226 (652)
291 PLN02858 fructose-bisphosphate 90.9 1.3 2.7E-05 49.9 9.8 34 39-73 3-36 (1378)
292 COG1062 AdhC Zn-dependent alco 90.9 2 4.4E-05 40.6 9.6 92 37-150 183-275 (366)
293 PRK07523 gluconate 5-dehydroge 90.9 1.1 2.5E-05 40.0 8.0 34 39-73 9-43 (255)
294 PRK05565 fabG 3-ketoacyl-(acyl 90.9 1.2 2.6E-05 39.3 8.1 31 39-70 4-35 (247)
295 PRK11730 fadB multifunctional 90.8 0.45 9.7E-06 49.9 6.0 33 41-74 314-346 (715)
296 PF02423 OCD_Mu_crystall: Orni 90.8 1.3 2.8E-05 41.6 8.5 74 40-139 128-202 (313)
297 PF12847 Methyltransf_18: Meth 90.7 1.9 4E-05 33.2 8.2 77 40-137 2-78 (112)
298 PRK12779 putative bifunctional 90.7 1.4 3.1E-05 47.7 9.7 94 39-139 305-402 (944)
299 PLN02545 3-hydroxybutyryl-CoA 90.7 0.39 8.4E-06 44.6 4.9 33 41-74 5-37 (295)
300 COG0665 DadA Glycine/D-amino a 90.7 0.42 9.1E-06 45.6 5.3 42 39-81 3-44 (387)
301 PRK07666 fabG 3-ketoacyl-(acyl 90.7 1.1 2.4E-05 39.5 7.7 34 39-73 6-40 (239)
302 PRK12367 short chain dehydroge 90.7 0.53 1.2E-05 42.4 5.6 41 32-74 7-48 (245)
303 PRK03803 murD UDP-N-acetylmura 90.6 1.4 3E-05 43.4 9.0 34 39-73 5-38 (448)
304 PRK06139 short chain dehydroge 90.6 1.4 3.1E-05 41.6 8.7 34 37-72 5-39 (330)
305 PRK06125 short chain dehydroge 90.6 1.9 4.1E-05 38.7 9.2 35 37-73 5-40 (259)
306 PRK08339 short chain dehydroge 90.6 2.1 4.5E-05 38.8 9.5 35 37-73 6-41 (263)
307 PRK06940 short chain dehydroge 90.6 1.5 3.3E-05 39.9 8.7 31 40-72 2-32 (275)
308 KOG0024 Sorbitol dehydrogenase 90.5 1.7 3.6E-05 40.9 8.7 34 39-72 169-202 (354)
309 PRK04457 spermidine synthase; 90.5 1.5 3.3E-05 40.1 8.5 70 3-74 23-100 (262)
310 PRK06035 3-hydroxyacyl-CoA deh 90.5 0.41 9E-06 44.3 4.8 33 41-74 4-36 (291)
311 TIGR01292 TRX_reduct thioredox 90.5 1.7 3.8E-05 39.5 9.0 32 42-74 2-33 (300)
312 PRK12827 short chain dehydroge 90.4 1.8 3.9E-05 38.2 8.8 32 39-71 5-37 (249)
313 PRK12810 gltD glutamate syntha 90.4 1.8 3.8E-05 43.1 9.5 33 40-73 143-175 (471)
314 PRK07102 short chain dehydroge 90.4 2.7 5.8E-05 37.2 9.9 32 41-73 2-34 (243)
315 PRK14188 bifunctional 5,10-met 90.4 1 2.2E-05 42.1 7.2 34 36-71 155-189 (296)
316 KOG0022 Alcohol dehydrogenase, 90.3 1.9 4E-05 40.5 8.7 91 37-150 190-283 (375)
317 PRK07589 ornithine cyclodeamin 90.3 1.8 3.9E-05 41.3 9.1 74 40-139 129-203 (346)
318 PRK12409 D-amino acid dehydrog 90.3 0.41 8.9E-06 46.3 4.9 33 41-74 2-34 (410)
319 cd05298 GH4_GlvA_pagL_like Gly 90.3 1.1 2.5E-05 44.1 7.9 104 42-181 2-113 (437)
320 PRK14874 aspartate-semialdehyd 90.3 1.5 3.3E-05 41.5 8.6 80 41-150 2-84 (334)
321 COG0771 MurD UDP-N-acetylmuram 90.1 0.99 2.1E-05 44.5 7.3 37 39-76 6-42 (448)
322 PRK07774 short chain dehydroge 90.1 1.8 4E-05 38.3 8.6 34 39-73 5-39 (250)
323 PRK07035 short chain dehydroge 90.1 1.8 3.9E-05 38.6 8.5 35 37-73 6-41 (252)
324 TIGR01318 gltD_gamma_fam gluta 90.1 2 4.3E-05 42.7 9.5 34 39-73 140-173 (467)
325 PRK06935 2-deoxy-D-gluconate 3 90.0 1.7 3.7E-05 39.0 8.4 34 37-72 13-47 (258)
326 COG0287 TyrA Prephenate dehydr 90.0 1 2.2E-05 41.7 6.9 33 40-73 3-35 (279)
327 PRK13303 L-aspartate dehydroge 89.9 1.9 4.2E-05 39.4 8.7 21 42-62 3-23 (265)
328 PF01408 GFO_IDH_MocA: Oxidore 89.9 1.8 4E-05 33.8 7.6 22 42-63 2-23 (120)
329 PRK06523 short chain dehydroge 89.9 1.1 2.4E-05 40.1 7.1 37 36-74 6-43 (260)
330 TIGR03451 mycoS_dep_FDH mycoth 89.9 2.5 5.4E-05 40.1 9.8 36 37-72 174-209 (358)
331 PRK13243 glyoxylate reductase; 89.9 0.45 9.8E-06 45.1 4.6 96 35-176 146-242 (333)
332 TIGR02469 CbiT precorrin-6Y C5 89.9 7.7 0.00017 30.0 12.2 90 40-150 20-109 (124)
333 PRK12429 3-hydroxybutyrate deh 89.9 1.6 3.5E-05 38.8 8.1 33 39-72 3-36 (258)
334 PLN02928 oxidoreductase family 89.9 0.27 5.8E-06 47.0 3.0 36 35-72 155-190 (347)
335 PF01266 DAO: FAD dependent ox 89.8 0.53 1.1E-05 43.9 5.1 35 42-77 1-35 (358)
336 PRK06914 short chain dehydroge 89.8 2.4 5.1E-05 38.5 9.3 34 39-73 2-36 (280)
337 PRK06823 ornithine cyclodeamin 89.8 2.2 4.7E-05 40.2 9.1 74 40-139 128-202 (315)
338 PRK13394 3-hydroxybutyrate deh 89.8 1.4 3E-05 39.3 7.7 33 39-72 6-39 (262)
339 PF01494 FAD_binding_3: FAD bi 89.7 0.5 1.1E-05 44.0 4.8 34 41-75 2-35 (356)
340 PRK05671 aspartate-semialdehyd 89.7 1.5 3.3E-05 41.6 8.1 81 41-149 5-86 (336)
341 PRK08213 gluconate 5-dehydroge 89.7 1.9 4.1E-05 38.6 8.4 35 36-72 9-44 (259)
342 PRK06249 2-dehydropantoate 2-r 89.7 0.52 1.1E-05 44.2 4.8 34 40-74 5-38 (313)
343 PRK13984 putative oxidoreducta 89.7 1.9 4E-05 44.3 9.3 96 39-139 282-378 (604)
344 TIGR01692 HIBADH 3-hydroxyisob 89.7 0.74 1.6E-05 42.6 5.8 29 45-74 1-29 (288)
345 PRK15438 erythronate-4-phospha 89.7 0.47 1E-05 45.8 4.6 35 36-72 113-147 (378)
346 PRK12775 putative trifunctiona 89.6 2.4 5.2E-05 46.3 10.4 95 39-139 429-527 (1006)
347 PRK06057 short chain dehydroge 89.6 0.68 1.5E-05 41.5 5.4 37 36-74 4-41 (255)
348 PRK06129 3-hydroxyacyl-CoA deh 89.6 0.5 1.1E-05 44.2 4.7 32 42-74 4-35 (308)
349 PRK05479 ketol-acid reductoiso 89.6 0.52 1.1E-05 44.6 4.7 78 35-146 13-90 (330)
350 PRK09126 hypothetical protein; 89.6 0.45 9.7E-06 45.6 4.5 36 39-75 2-37 (392)
351 PLN02206 UDP-glucuronate decar 89.6 1.7 3.7E-05 42.9 8.6 33 39-72 118-151 (442)
352 PRK12829 short chain dehydroge 89.5 1.6 3.6E-05 38.9 7.9 36 35-72 7-43 (264)
353 PRK08229 2-dehydropantoate 2-r 89.5 0.47 1E-05 44.8 4.5 32 41-73 3-34 (341)
354 TIGR01181 dTDP_gluc_dehyt dTDP 89.5 4.1 8.9E-05 37.3 10.7 30 42-71 1-32 (317)
355 PRK09853 putative selenate red 89.5 1.8 3.9E-05 47.0 9.1 35 39-74 538-572 (1019)
356 TIGR01316 gltA glutamate synth 89.5 3.3 7.1E-05 40.9 10.5 34 39-73 132-165 (449)
357 TIGR00137 gid_trmFO tRNA:m(5)U 89.4 0.52 1.1E-05 46.3 4.7 32 41-73 1-32 (433)
358 PRK07792 fabG 3-ketoacyl-(acyl 89.4 3.1 6.7E-05 38.6 9.8 79 36-137 9-97 (306)
359 PLN02520 bifunctional 3-dehydr 89.4 0.49 1.1E-05 47.8 4.7 33 39-72 378-410 (529)
360 PRK08306 dipicolinate synthase 89.4 0.59 1.3E-05 43.6 4.9 34 39-73 151-184 (296)
361 PRK05876 short chain dehydroge 89.3 2 4.3E-05 39.2 8.4 34 39-73 5-39 (275)
362 PRK02472 murD UDP-N-acetylmura 89.3 1.3 2.8E-05 43.5 7.5 34 39-73 4-37 (447)
363 PRK08277 D-mannonate oxidoredu 89.3 2.1 4.6E-05 38.8 8.5 35 37-73 8-43 (278)
364 PRK07453 protochlorophyllide o 89.3 1.6 3.6E-05 40.7 7.9 33 39-72 5-38 (322)
365 PRK09291 short chain dehydroge 89.3 3.1 6.7E-05 37.0 9.4 31 40-71 2-33 (257)
366 PRK08063 enoyl-(acyl carrier p 89.3 1.5 3.3E-05 38.8 7.4 30 39-69 3-33 (250)
367 PRK06436 glycerate dehydrogena 89.2 0.31 6.8E-06 45.6 2.9 37 35-73 118-154 (303)
368 PRK05872 short chain dehydroge 89.2 3.1 6.7E-05 38.3 9.7 35 37-73 7-42 (296)
369 PRK05650 short chain dehydroge 89.2 2.2 4.7E-05 38.6 8.5 30 42-72 2-32 (270)
370 PRK11749 dihydropyrimidine deh 89.2 2.3 4.9E-05 42.0 9.2 34 39-73 139-172 (457)
371 PRK00257 erythronate-4-phospha 89.1 0.54 1.2E-05 45.5 4.6 35 36-72 113-147 (381)
372 TIGR03364 HpnW_proposed FAD de 89.1 0.77 1.7E-05 43.6 5.6 34 42-76 2-35 (365)
373 TIGR01377 soxA_mon sarcosine o 89.1 0.59 1.3E-05 44.5 4.9 33 42-75 2-34 (380)
374 PF02629 CoA_binding: CoA bind 89.0 2.1 4.5E-05 32.6 7.0 81 39-150 2-83 (96)
375 COG2085 Predicted dinucleotide 89.0 3.9 8.4E-05 36.1 9.4 80 41-150 2-81 (211)
376 PLN02166 dTDP-glucose 4,6-dehy 88.9 3.2 6.9E-05 40.9 9.9 33 40-73 120-153 (436)
377 TIGR02437 FadB fatty oxidation 88.9 0.44 9.6E-06 49.9 4.1 34 40-74 313-346 (714)
378 TIGR03315 Se_ygfK putative sel 88.9 2.8 6.1E-05 45.6 10.2 34 40-74 537-570 (1012)
379 PRK11154 fadJ multifunctional 88.9 0.79 1.7E-05 48.0 5.9 34 40-74 309-343 (708)
380 PRK05714 2-octaprenyl-3-methyl 88.8 0.53 1.2E-05 45.5 4.4 34 40-74 2-35 (405)
381 PRK08643 acetoin reductase; Va 88.8 2.6 5.6E-05 37.6 8.6 32 40-72 2-34 (256)
382 PF05368 NmrA: NmrA-like famil 88.8 4.6 9.9E-05 35.6 10.1 70 43-138 1-73 (233)
383 PRK06407 ornithine cyclodeamin 88.8 2.9 6.3E-05 39.1 9.1 76 40-140 117-193 (301)
384 PRK06185 hypothetical protein; 88.7 0.64 1.4E-05 44.9 4.8 35 39-74 5-39 (407)
385 PRK08040 putative semialdehyde 88.6 2.5 5.4E-05 40.2 8.6 82 39-150 3-87 (336)
386 COG0345 ProC Pyrroline-5-carbo 88.6 2.7 5.9E-05 38.6 8.5 78 41-149 2-82 (266)
387 PRK12266 glpD glycerol-3-phosp 88.5 0.81 1.8E-05 46.0 5.6 42 40-82 6-47 (508)
388 PRK07074 short chain dehydroge 88.5 3 6.6E-05 37.2 8.9 32 40-72 2-34 (257)
389 COG0281 SfcA Malic enzyme [Ene 88.5 0.5 1.1E-05 45.7 3.8 92 35-150 195-291 (432)
390 PRK08589 short chain dehydroge 88.5 2 4.4E-05 39.0 7.8 33 37-71 4-37 (272)
391 PRK07494 2-octaprenyl-6-methox 88.4 0.65 1.4E-05 44.5 4.7 34 40-74 7-40 (388)
392 PF03721 UDPG_MGDP_dh_N: UDP-g 88.4 0.61 1.3E-05 40.4 4.0 84 42-138 2-85 (185)
393 PRK06124 gluconate 5-dehydroge 88.3 2.1 4.7E-05 38.1 7.7 34 39-73 10-44 (256)
394 cd08239 THR_DH_like L-threonin 88.3 3.9 8.5E-05 38.2 9.8 34 39-72 163-196 (339)
395 PF03447 NAD_binding_3: Homose 88.2 0.53 1.1E-05 37.2 3.3 27 47-73 1-31 (117)
396 TIGR02028 ChlP geranylgeranyl 88.2 0.63 1.4E-05 45.1 4.4 31 42-73 2-32 (398)
397 PRK07326 short chain dehydroge 88.1 3.3 7.1E-05 36.3 8.7 33 39-72 5-38 (237)
398 PRK12778 putative bifunctional 88.1 2.8 6.1E-05 44.3 9.5 34 39-73 430-463 (752)
399 PRK01747 mnmC bifunctional tRN 88.0 0.7 1.5E-05 48.0 4.9 33 41-74 261-293 (662)
400 TIGR00518 alaDH alanine dehydr 88.0 0.77 1.7E-05 44.2 4.8 34 39-73 166-199 (370)
401 PLN00016 RNA-binding protein; 87.9 2.8 6.2E-05 40.1 8.8 35 39-74 51-90 (378)
402 PRK11101 glpA sn-glycerol-3-ph 87.9 0.93 2E-05 46.0 5.6 36 40-76 6-41 (546)
403 PRK07067 sorbitol dehydrogenas 87.9 1.3 2.7E-05 39.7 5.9 35 39-74 5-40 (257)
404 PRK07236 hypothetical protein; 87.9 0.74 1.6E-05 44.2 4.7 35 39-74 5-39 (386)
405 PRK08416 7-alpha-hydroxysteroi 87.9 3.8 8.3E-05 36.7 9.1 33 36-70 5-38 (260)
406 cd05197 GH4_glycoside_hydrolas 87.8 2.4 5.2E-05 41.7 8.2 88 42-150 2-97 (425)
407 PRK04207 glyceraldehyde-3-phos 87.8 3.5 7.6E-05 39.3 9.2 21 41-61 2-22 (341)
408 PRK11728 hydroxyglutarate oxid 87.8 0.86 1.9E-05 43.9 5.1 34 40-74 2-37 (393)
409 PRK08664 aspartate-semialdehyd 87.8 2.4 5.3E-05 40.4 8.1 31 40-70 3-34 (349)
410 PF02056 Glyco_hydro_4: Family 87.7 1.1 2.4E-05 38.7 5.1 82 42-144 1-90 (183)
411 PLN02896 cinnamyl-alcohol dehy 87.7 3.9 8.4E-05 38.7 9.5 32 40-72 10-42 (353)
412 cd00401 AdoHcyase S-adenosyl-L 87.7 0.83 1.8E-05 44.6 4.9 35 39-74 201-235 (413)
413 PLN02657 3,8-divinyl protochlo 87.7 4.6 9.9E-05 39.1 10.0 33 39-72 59-92 (390)
414 KOG1205 Predicted dehydrogenas 87.6 4.1 8.9E-05 37.7 9.1 84 32-136 5-98 (282)
415 PF00670 AdoHcyase_NAD: S-aden 87.6 0.93 2E-05 38.4 4.5 36 39-75 22-57 (162)
416 cd08281 liver_ADH_like1 Zinc-d 87.6 3.9 8.5E-05 39.0 9.5 34 39-72 191-224 (371)
417 PRK07608 ubiquinone biosynthes 87.6 0.84 1.8E-05 43.7 4.8 36 39-75 4-39 (388)
418 PRK08013 oxidoreductase; Provi 87.6 0.77 1.7E-05 44.4 4.6 34 40-74 3-36 (400)
419 PRK06398 aldose dehydrogenase; 87.5 2.6 5.7E-05 37.9 7.9 73 37-115 4-78 (258)
420 TIGR03329 Phn_aa_oxid putative 87.5 0.97 2.1E-05 44.7 5.4 43 40-83 24-68 (460)
421 PRK06184 hypothetical protein; 87.5 0.72 1.6E-05 46.1 4.5 34 39-73 2-35 (502)
422 PRK15181 Vi polysaccharide bio 87.5 5.5 0.00012 37.7 10.3 34 39-73 14-48 (348)
423 PLN02463 lycopene beta cyclase 87.5 0.86 1.9E-05 45.1 4.9 52 18-74 10-61 (447)
424 PRK15076 alpha-galactosidase; 87.5 1.4 3E-05 43.4 6.3 77 41-138 2-84 (431)
425 PRK08773 2-octaprenyl-3-methyl 87.4 0.83 1.8E-05 43.9 4.7 35 39-74 5-39 (392)
426 PF10087 DUF2325: Uncharacteri 87.4 3.2 6.9E-05 31.7 7.1 70 94-178 10-86 (97)
427 PRK08085 gluconate 5-dehydroge 87.4 2.9 6.2E-05 37.3 7.9 32 39-71 8-40 (254)
428 PRK00711 D-amino acid dehydrog 87.4 0.85 1.8E-05 44.1 4.8 32 42-74 2-33 (416)
429 PRK12770 putative glutamate sy 87.3 3.6 7.8E-05 39.0 9.0 98 39-139 17-128 (352)
430 PRK08278 short chain dehydroge 87.3 4.3 9.3E-05 36.8 9.2 34 39-73 5-39 (273)
431 PRK00517 prmA ribosomal protei 87.3 15 0.00031 33.2 12.5 34 39-74 119-152 (250)
432 PRK06113 7-alpha-hydroxysteroi 87.3 2.5 5.4E-05 37.8 7.5 33 37-71 9-42 (255)
433 PRK08226 short chain dehydroge 87.3 2.9 6.4E-05 37.4 8.0 36 36-73 3-39 (263)
434 TIGR01317 GOGAT_sm_gam glutama 87.2 3.5 7.6E-05 41.2 9.2 34 40-74 143-176 (485)
435 PRK07097 gluconate 5-dehydroge 87.2 2.7 5.9E-05 37.8 7.8 32 39-71 9-41 (265)
436 PRK12825 fabG 3-ketoacyl-(acyl 87.2 2.3 5.1E-05 37.3 7.2 30 39-69 5-35 (249)
437 PRK07677 short chain dehydroge 87.2 2.8 6.1E-05 37.3 7.8 32 41-73 2-34 (252)
438 PRK12744 short chain dehydroge 87.2 3.5 7.6E-05 36.8 8.4 31 39-69 7-38 (257)
439 PRK12937 short chain dehydroge 87.1 2.9 6.3E-05 36.9 7.8 32 39-71 4-36 (245)
440 PRK08244 hypothetical protein; 87.1 0.86 1.9E-05 45.4 4.7 33 40-73 2-34 (493)
441 PRK06270 homoserine dehydrogen 87.1 3.7 8E-05 39.1 8.8 23 40-62 2-24 (341)
442 PRK08264 short chain dehydroge 87.0 1 2.2E-05 39.7 4.8 36 39-74 5-41 (238)
443 PRK07109 short chain dehydroge 87.0 3.7 8E-05 38.8 8.8 33 39-72 7-40 (334)
444 PRK08850 2-octaprenyl-6-methox 87.0 0.83 1.8E-05 44.2 4.5 33 40-73 4-36 (405)
445 PF13738 Pyr_redox_3: Pyridine 86.9 0.77 1.7E-05 39.5 3.8 34 36-71 164-197 (203)
446 TIGR01772 MDH_euk_gproteo mala 86.9 0.89 1.9E-05 42.7 4.5 33 42-74 1-35 (312)
447 PRK05653 fabG 3-ketoacyl-(acyl 86.9 2.6 5.7E-05 36.9 7.3 34 39-73 4-38 (246)
448 PRK05717 oxidoreductase; Valid 86.8 1.9 4.1E-05 38.5 6.5 34 39-73 9-43 (255)
449 TIGR00465 ilvC ketol-acid redu 86.8 0.75 1.6E-05 43.3 3.9 32 39-71 2-33 (314)
450 PRK06114 short chain dehydroge 86.8 2.8 6.2E-05 37.4 7.6 34 37-72 6-40 (254)
451 PLN02740 Alcohol dehydrogenase 86.8 5.1 0.00011 38.4 9.8 36 37-72 196-231 (381)
452 TIGR00036 dapB dihydrodipicoli 86.7 3.9 8.5E-05 37.4 8.5 30 42-71 3-34 (266)
453 TIGR02441 fa_ox_alpha_mit fatt 86.7 0.55 1.2E-05 49.4 3.2 33 41-74 336-368 (737)
454 TIGR02023 BchP-ChlP geranylger 86.6 0.98 2.1E-05 43.5 4.7 31 42-73 2-32 (388)
455 PRK05855 short chain dehydroge 86.6 2.5 5.3E-05 42.5 7.8 41 30-72 306-347 (582)
456 PRK06171 sorbitol-6-phosphate 86.6 3.5 7.6E-05 37.0 8.1 75 37-115 7-83 (266)
457 PRK08163 salicylate hydroxylas 86.5 1 2.2E-05 43.2 4.8 34 40-74 4-37 (396)
458 PLN02989 cinnamyl-alcohol dehy 86.4 4.8 0.0001 37.4 9.2 31 40-71 5-36 (325)
459 COG0686 Ald Alanine dehydrogen 86.4 1.1 2.5E-05 41.8 4.7 34 39-73 167-200 (371)
460 PRK07024 short chain dehydroge 86.4 1.8 3.9E-05 38.8 6.1 33 40-73 2-35 (257)
461 PLN02464 glycerol-3-phosphate 86.3 1.2 2.6E-05 46.0 5.5 38 41-79 72-109 (627)
462 PRK07364 2-octaprenyl-6-methox 86.3 1 2.2E-05 43.5 4.7 34 40-74 18-51 (415)
463 PRK08125 bifunctional UDP-gluc 86.3 7.2 0.00016 40.5 11.2 40 31-72 307-348 (660)
464 PRK07856 short chain dehydroge 86.3 2.8 6.2E-05 37.3 7.3 35 39-74 5-40 (252)
465 PRK08849 2-octaprenyl-3-methyl 86.3 0.92 2E-05 43.6 4.3 34 40-74 3-36 (384)
466 COG0654 UbiH 2-polyprenyl-6-me 86.3 1 2.3E-05 43.4 4.7 33 40-73 2-34 (387)
467 PRK08862 short chain dehydroge 86.2 3.8 8.2E-05 36.3 8.0 33 39-72 4-37 (227)
468 PRK06932 glycerate dehydrogena 86.2 0.65 1.4E-05 43.7 3.1 78 35-152 143-221 (314)
469 PRK06487 glycerate dehydrogena 86.2 1 2.2E-05 42.5 4.4 77 35-152 144-221 (317)
470 TIGR02632 RhaD_aldol-ADH rhamn 86.2 5.9 0.00013 41.4 10.5 32 40-72 414-446 (676)
471 PLN02494 adenosylhomocysteinas 86.2 1.1 2.5E-05 44.3 4.9 36 39-75 253-288 (477)
472 PRK12743 oxidoreductase; Provi 86.1 4.4 9.5E-05 36.2 8.5 31 40-71 2-33 (256)
473 PF00743 FMO-like: Flavin-bind 86.1 1.2 2.6E-05 45.0 5.2 31 40-71 1-31 (531)
474 PRK00141 murD UDP-N-acetylmura 86.1 1.1 2.3E-05 44.7 4.7 34 39-73 14-47 (473)
475 PRK08507 prephenate dehydrogen 86.0 1.2 2.5E-05 40.9 4.7 31 42-72 2-33 (275)
476 CHL00194 ycf39 Ycf39; Provisio 86.0 8.4 0.00018 35.8 10.6 29 42-71 2-31 (317)
477 PRK12746 short chain dehydroge 86.0 2.6 5.7E-05 37.5 6.9 33 36-70 3-36 (254)
478 PRK06179 short chain dehydroge 86.0 3.7 8.1E-05 36.9 8.0 34 40-74 4-38 (270)
479 PLN02366 spermidine synthase 85.9 5.3 0.00011 37.5 9.1 33 40-74 92-125 (308)
480 PRK08410 2-hydroxyacid dehydro 85.9 1.1 2.4E-05 42.1 4.5 79 35-152 141-220 (311)
481 PRK05732 2-octaprenyl-6-methox 85.9 0.98 2.1E-05 43.3 4.3 34 39-73 2-38 (395)
482 PRK06753 hypothetical protein; 85.9 1.1 2.4E-05 42.5 4.7 32 42-74 2-33 (373)
483 PRK08303 short chain dehydroge 85.8 6.5 0.00014 36.6 9.7 35 37-73 6-41 (305)
484 cd05297 GH4_alpha_glucosidase_ 85.7 2.5 5.3E-05 41.6 7.0 73 42-138 2-83 (423)
485 PF08659 KR: KR domain; Inter 85.7 5.2 0.00011 34.1 8.3 58 42-117 2-60 (181)
486 PRK14806 bifunctional cyclohex 85.7 5.4 0.00012 41.9 10.0 33 41-73 4-37 (735)
487 PRK06198 short chain dehydroge 85.7 2.4 5.2E-05 37.8 6.6 36 37-73 4-40 (260)
488 PLN02968 Probable N-acetyl-gam 85.6 3.8 8.3E-05 39.6 8.2 86 39-148 37-123 (381)
489 PTZ00075 Adenosylhomocysteinas 85.6 1.3 2.7E-05 44.0 4.9 37 36-74 251-287 (476)
490 TIGR02032 GG-red-SF geranylger 85.6 1.3 2.8E-05 40.2 4.8 33 42-75 2-34 (295)
491 PF05834 Lycopene_cycl: Lycope 85.6 2.4 5.3E-05 40.7 6.9 64 43-114 2-69 (374)
492 PRK06847 hypothetical protein; 85.5 1.2 2.7E-05 42.2 4.8 34 40-74 4-37 (375)
493 PRK14031 glutamate dehydrogena 85.5 3.5 7.6E-05 40.6 7.9 36 37-73 226-261 (444)
494 PRK07454 short chain dehydroge 85.5 5 0.00011 35.4 8.4 33 40-73 6-39 (241)
495 PRK08265 short chain dehydroge 85.4 1.9 4.1E-05 38.8 5.8 35 37-73 4-39 (261)
496 PLN00093 geranylgeranyl diphos 85.4 1.2 2.6E-05 44.1 4.7 33 40-73 39-71 (450)
497 COG0493 GltD NADPH-dependent g 85.3 4.5 9.7E-05 40.2 8.6 94 39-139 122-218 (457)
498 PRK08243 4-hydroxybenzoate 3-m 85.3 1.3 2.8E-05 42.7 4.8 34 40-74 2-35 (392)
499 TIGR02360 pbenz_hydroxyl 4-hyd 85.2 1.3 2.9E-05 42.7 4.9 34 40-74 2-35 (390)
500 PLN02256 arogenate dehydrogena 85.2 1.4 3.1E-05 41.2 4.9 32 40-72 36-67 (304)
No 1
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.2e-61 Score=444.26 Aligned_cols=274 Identities=66% Similarity=1.115 Sum_probs=261.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+|+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||||+++|+|++||++++++++++||+++++++...+.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCC
Q 020259 122 KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP 201 (328)
Q Consensus 122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~ 201 (328)
.+.+++++||+||+|+|+.++|+++|+.|+.+..+.+ ++..+|+|++++.|+.|++++++|+.|+||+|.++.+|
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~-----~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p 155 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYED-----PESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFP 155 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccc-----cccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCC
Confidence 8889999999999999999999999999876543221 35679999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCcc
Q 020259 202 PQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPA 281 (328)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 281 (328)
++..+|+|+++++|+.++||++|+..+.|.+++...++++++++|++|+++.+++++++|+|++.+..+++++++++.|+
T Consensus 156 ~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPa 235 (291)
T cd01488 156 PQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPA 235 (291)
T ss_pred CCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCc
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259 282 IASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF 320 (328)
Q Consensus 282 l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~ 320 (328)
+++|+||||+.++.|++|++|+..++++||++|.|.++.
T Consensus 236 i~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~ 274 (291)
T cd01488 236 VASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGC 274 (291)
T ss_pred cCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCce
Confidence 999999999999999999999999999999999999864
No 2
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-60 Score=424.90 Aligned_cols=310 Identities=53% Similarity=0.889 Sum_probs=294.7
Q ss_pred ccchhhhhhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC
Q 020259 7 SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF 86 (328)
Q Consensus 7 ~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~ 86 (328)
-||.+.-++.+|+++|.-.-+..+.|.-+.| .+.+|||||+||+|||++|||+++|++.+.++|.|.++.+||+|||+|
T Consensus 8 ~r~~~~~~~l~r~gpf~~~~f~~~~e~l~~l-~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF 86 (422)
T KOG2015|consen 8 KRWNGWRQSLERPGPFNLDAFEPSEENLEFL-QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLF 86 (422)
T ss_pred hhhHHHHHHhcCCCCCCCCCCCCCHHHHHHH-hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcc
Confidence 4899999999999999999999999999999 699999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccc
Q 020259 87 RMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 166 (328)
Q Consensus 87 ~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 166 (328)
++.|+|++||+++++.+.+..|...|..+..++++.+.+|+++|++||++.|+.++|+|||.+.+.+..+ |++=...
T Consensus 87 ~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~d~~~ 163 (422)
T KOG2015|consen 87 RESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNYDISS 163 (422)
T ss_pred cccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543 2211234
Q ss_pred cceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcC-CCCCCCChh
Q 020259 167 IKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPE 245 (328)
Q Consensus 167 ~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 245 (328)
-+|+|++|++|+.|++++++|+.|+|++|.++.+|++-.+|.|++.+.||.|+||++|...+.|.+.... .+++.++++
T Consensus 164 iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~ 243 (422)
T KOG2015|consen 164 IIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPE 243 (422)
T ss_pred eeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999865 678999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259 246 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF 320 (328)
Q Consensus 246 ~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~ 320 (328)
|++|+.+.+++++.+|++++.+..++.++++.++|+++.|+|+|++.+|.|++|++|.-+.|++||++|++.+|.
T Consensus 244 hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ 318 (422)
T KOG2015|consen 244 HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGI 318 (422)
T ss_pred HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998874
No 3
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-56 Score=396.92 Aligned_cols=291 Identities=19% Similarity=0.201 Sum_probs=240.8
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
...-|||||||||.++|++|| ++||||+|++|+|+|++|||+++|||++|++|+..|++++++.|||+..+++|++||+
T Consensus 10 E~alYDRQIRLWG~~AQ~~lr-~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~rae 88 (331)
T KOG2014|consen 10 EIALYDRQIRLWGLEAQRRLR-KSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAE 88 (331)
T ss_pred HHHHHHHHHHHccHHHHHhhh-hceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHH
Confidence 445699999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
+..++++++||+|++....+++.+.+++||.+||+||....+.+.+..+|.+| |+.+++|+.+.+.|
T Consensus 89 as~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~ic-------------rk~~i~F~a~d~~g 155 (331)
T KOG2014|consen 89 ASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEIC-------------RKLNIAFYAGDCFG 155 (331)
T ss_pred HHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHH-------------HhcCceEEeccccc
Confidence 99999999999999999999999999999999999999988889999999999 67889999999999
Q ss_pred eeeeEEEEcCCCCCccc-----cccCC-------C---CCCCCCCcccccC-------------CCCChhhHHHHHHHHh
Q 020259 178 FKGHARVIIPGVTPCFE-----CTIWL-------F---PPQVKFPLCTLAE-------------TPRTAAHCIEYAHLIK 229 (328)
Q Consensus 178 ~~G~v~~~~p~~~~c~~-----c~~~~-------~---~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~ 229 (328)
+.|+.+.++.+|..-.. |.-+. . +.+....+|++.+ .+|..+.++.+...+.
T Consensus 156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~ 235 (331)
T KOG2014|consen 156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK 235 (331)
T ss_pred eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence 99999999987643221 11000 0 0111222233221 1222333456666777
Q ss_pred hhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC
Q 020259 230 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS 309 (328)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~ 309 (328)
|..-+++.+- ..+.++++.+....++.....++-+. . ..++....+++++|+||||||++|||+||+||++..|++
T Consensus 236 f~~s~~r~pg-~~~~~d~erl~~I~~ell~s~~i~pd--~-~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~ 311 (331)
T KOG2014|consen 236 FRTSEGRDPG-ETSEEDLERLLQIRNELLESETIIPD--E-LLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLN 311 (331)
T ss_pred HHHhcCCCCc-cccHHHHHHHHHHHHhhccccccCCc--h-HHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCccc
Confidence 7777776666 56778888888877777764444333 2 227888999999999999999999999999999999999
Q ss_pred ceEEeecCccccccccc
Q 020259 310 NYLTYAQLSFFASAMQF 326 (328)
Q Consensus 310 N~~~fdg~~~~~~~~~~ 326 (328)
|||+|||+++.|.+..|
T Consensus 312 Nff~fdg~~g~g~ie~l 328 (331)
T KOG2014|consen 312 NFFIFDGETGKGPIEDL 328 (331)
T ss_pred ceEEeecccCceehhhc
Confidence 99999999999987665
No 4
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=6e-54 Score=383.61 Aligned_cols=231 Identities=53% Similarity=0.996 Sum_probs=219.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
||+|+|+||+|||++|+|+++|+|+|+|+|+|.|+++||+|||||+++|+|++||++++++++++||+++++++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998843
Q ss_pred ---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccC
Q 020259 122 ---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198 (328)
Q Consensus 122 ---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~ 198 (328)
.+.+++++||+||+|+|+.++|.++|+.| +..++|+|++++.|+.|++++++|+.++||+|..
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c-------------~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~- 146 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGML-------------IFLIVPLIESGTEGFKGNAQVILPGMTECIECTL- 146 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEcccCCceEEEEEcCCCCCCcccCC-
Confidence 35789999999999999999999999999 6778999999999999999999999999999998
Q ss_pred CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhcc
Q 020259 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNI 278 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 278 (328)
.++++.+|.|+++++|+.|+||+.|+..+.| ++..|++|+++.+++++++|+|++.+....+++++++
T Consensus 147 -~~~~~~~p~Cti~~~P~~~~hci~~a~~~~~-----------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~i 214 (234)
T cd01484 147 -YPPQKNFPMCTIASMPRLPEHCIEWARMLQW-----------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRI 214 (234)
T ss_pred -CCCCCCCCccccCCCCCCchHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCe
Confidence 4666789999999999999999999999988 6788999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHHH
Q 020259 279 IPAIASTNAIISAACALETL 298 (328)
Q Consensus 279 ~~~l~p~~aivGG~~aqEvi 298 (328)
+|++++|+|||+|+++.|++
T Consensus 215 ipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 215 IPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred ecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999863
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=5.7e-53 Score=390.82 Aligned_cols=256 Identities=41% Similarity=0.722 Sum_probs=237.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+|+|||+||+|+|++|||+++|+|+|+|+|+|.++.+||+|||+|+++|+|++||++++++++++||+++|+++...+.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred c--chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCC
Q 020259 122 K--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 199 (328)
Q Consensus 122 ~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~ 199 (328)
. +.++++++|+||+|.|+.+.|.++|++| +..++|+|++++.|+.|++++++|+.++||+|..+
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c-------------~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~- 146 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMC-------------LAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK- 146 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC-
Confidence 3 5689999999999999999999999999 67899999999999999999999999999999865
Q ss_pred CCCCCCCCcccccCCCCChhhHHHHHHHH--------------------hhhhhhcC-------CCCCCCChhHHHHHHH
Q 020259 200 FPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------KWDEVHSG-------KSFDPDDPEHMQWVYS 252 (328)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~~-------~~~~~~~~~~~~~l~~ 252 (328)
+++..++.|++.+.|+.+.||+.|+..+ .|+..+.+ .+|++|+++|++|+++
T Consensus 147 -~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~ 225 (312)
T cd01489 147 -ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTRKPPVPLSWKELTFDKDDQDALDFVAA 225 (312)
T ss_pred -CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCcCcCCCCHHHHHHHHH
Confidence 4456799999999999999999999887 78765533 4588999999999999
Q ss_pred HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceE
Q 020259 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYL 312 (328)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~ 312 (328)
++++++.+|+|+..+....++++++++|++++|+|||+|+++.|++|+++++..-..|.|
T Consensus 226 ~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~ 285 (312)
T cd01489 226 AANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVF 285 (312)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHh
Confidence 999999999999999999999999999999999999999999999999999855555544
No 6
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=3.6e-51 Score=393.77 Aligned_cols=157 Identities=21% Similarity=0.269 Sum_probs=147.9
Q ss_pred CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (328)
Q Consensus 20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~ 99 (328)
.|||||+|+||.++|++| ++++|+|||+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+|++||+++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L-~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~ 79 (425)
T cd01493 1 QKYDRQLRLWGEHGQAAL-ESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEAT 79 (425)
T ss_pred CcchHHHHHhHHHHHHHH-hhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHH
Confidence 489999999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecccCC---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259 100 AKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (328)
Q Consensus 100 ~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~ 176 (328)
+++|+++||+++++.+.+.+.. .+.+++++||+||+|.++...+..++++| ++.++|+|.+++.
T Consensus 80 ~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c-------------~~~~iPlI~~~s~ 146 (425)
T cd01493 80 CELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVL-------------WSANIPLLYVRSY 146 (425)
T ss_pred HHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEecc
Confidence 9999999999999999887643 35789999999999999988888999999 6789999999999
Q ss_pred ceeeeEEEEcCCCC
Q 020259 177 GFKGHARVIIPGVT 190 (328)
Q Consensus 177 G~~G~v~~~~p~~~ 190 (328)
|++|++++++|+++
T Consensus 147 G~~G~v~v~~~~h~ 160 (425)
T cd01493 147 GLYGYIRIQLKEHT 160 (425)
T ss_pred cCEEEEEEEECCeE
Confidence 99999999999653
No 7
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.9e-52 Score=380.29 Aligned_cols=272 Identities=22% Similarity=0.286 Sum_probs=210.9
Q ss_pred CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH
Q 020259 21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100 (328)
Q Consensus 21 ~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~ 100 (328)
.|+||+++||.++|+|| ++++|+|+|+||+|+|+||||+++||++|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 1 lYsRQl~~~G~eaq~kL-~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~ 79 (286)
T cd01491 1 LYSRQLYVLGHEAMKKL-QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79 (286)
T ss_pred CcccceeccCHHHHHHH-hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHH
Confidence 38999999999999999 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceee
Q 020259 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180 (328)
Q Consensus 101 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G 180 (328)
++|+++||+++|+++...+ ..+++++||+||+|.++.+.+.++|++| +++++|||.+++.|+.|
T Consensus 80 ~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c-------------~~~~ipfI~a~~~G~~G 143 (286)
T cd01491 80 ARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFC-------------HSPGIKFISADTRGLFG 143 (286)
T ss_pred HHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHH-------------HHcCCEEEEEeccccEE
Confidence 9999999999999998763 4678999999999999999999999999 67899999999999999
Q ss_pred eEEEEcCCCCCccccccCCCCCCCCCCcccccCC-------CCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259 181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAET-------PRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (328)
Q Consensus 181 ~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (328)
+++.++++ ||.|.-....++.....|++.+. -....|.++-.+.+.|++.+++..++...+..+.-+-.
T Consensus 144 ~vf~dfg~---~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~- 219 (286)
T cd01491 144 SIFCDFGD---EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGP- 219 (286)
T ss_pred EEEecCCC---eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCC-
Confidence 99998764 55554222222333344444332 12235666666778888877666555433221100000
Q ss_pred HHHHHHHhCCCCCch---hhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259 254 AVKRAELFGIPGVTY---SLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF 320 (328)
Q Consensus 254 ~~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~ 320 (328)
..+.|..... ..-.+++.+.- ++|++|++||++|||++|++|+++.|+.+||+||..++.
T Consensus 220 -----~~f~i~d~~~~~~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l 282 (286)
T cd01491 220 -----YTFSIGDTSSFSEYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECL 282 (286)
T ss_pred -----CeEEECcCcCcCccccCcEEEEEe--cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhc
Confidence 0111110000 01111111111 899999999999999999999999999999999987654
No 8
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.3e-50 Score=423.23 Aligned_cols=205 Identities=33% Similarity=0.581 Sum_probs=189.7
Q ss_pred ccchhhhhhhh--------------cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCC-----CeE
Q 020259 7 SRSRDLDKLLL--------------RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-----KNL 67 (328)
Q Consensus 7 ~~~~~~~~~~~--------------~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gv-----g~i 67 (328)
.||.|+|.+.. ..+|||||+++||.++|++| ++++|+|||+||+|||++|||+++|| |+|
T Consensus 373 ~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL-~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i 451 (1008)
T TIGR01408 373 CQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKL-QNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMI 451 (1008)
T ss_pred eeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHH-hhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeE
Confidence 58888886443 34689999999999999999 69999999999999999999999999 899
Q ss_pred EEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCc-----chhhhccCCEEEecCCCHHH
Q 020259 68 EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEA 142 (328)
Q Consensus 68 tlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~-----~~~~~~~~dvVi~~~d~~~~ 142 (328)
+|+|+|.|+.+||+|||||+.+|||++||++++++++++||+++|+++...+... +.+|++++|+||+|+|+.++
T Consensus 452 ~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~a 531 (1008)
T TIGR01408 452 TVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEA 531 (1008)
T ss_pred EEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHH
Confidence 9999999999999999999999999999999999999999999999999888542 35789999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHH
Q 020259 143 RSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCI 222 (328)
Q Consensus 143 ~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i 222 (328)
|.++|+.| ..+++|+|.+++.|+.|++++++|+.|.||.|..+ |++..+|+|+++++|..++||+
T Consensus 532 R~~vn~~c-------------~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d--~~~~~~P~Ctl~~~P~~~~h~i 596 (1008)
T TIGR01408 532 RRYVDSRC-------------LAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKEIPFCTLKSFPAAIEHTI 596 (1008)
T ss_pred HHHHHHHH-------------HHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCC--CCCCCCCcccccCCCCCchHHH
Confidence 99999999 67899999999999999999999999999999853 6678899999999999999999
Q ss_pred HHHHH
Q 020259 223 EYAHL 227 (328)
Q Consensus 223 ~~~~~ 227 (328)
.|+..
T Consensus 597 ~wa~~ 601 (1008)
T TIGR01408 597 QWARD 601 (1008)
T ss_pred HHHHH
Confidence 98764
No 9
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=2.5e-48 Score=372.47 Aligned_cols=249 Identities=37% Similarity=0.638 Sum_probs=221.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 42 RILVVGAGGLGCELLKDLALSGF-----KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv-----g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+|+|||+||+|||++|||+++|| |+|+|+|+|.|+.+||+|||||+++|||++||++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCc-----chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCC
Q 020259 117 CRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 191 (328)
Q Consensus 117 ~~~~~~-----~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~ 191 (328)
..+.+. +.++++++|+||+|+|+.++|.++|+.| +..++|+|.+++.|+.|++++.+|+.|+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C-------------~~~~iPli~~gt~G~~G~v~v~iP~~te 147 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRC-------------VYYRKPLLESGTLGTKGNTQVVIPHLTE 147 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHhCCCEEEEecccceeEEEEEeCCCCC
Confidence 888642 3578999999999999999999999999 6779999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHH---------------------hh-----hhhh-----------
Q 020259 192 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---------------------KW-----DEVH----------- 234 (328)
Q Consensus 192 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------------~~-----~~~~----------- 234 (328)
||.|..+ |++...|.|+++++|+.++||++|+..+ .| +..+
T Consensus 148 ~y~~~~~--p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~ll~~~ 225 (435)
T cd01490 148 SYSSSRD--PPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYLFEDCVRWARLLFEKYFNNNIKQLLHNF 225 (435)
T ss_pred CccCCCC--CCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999853 6677899999999999999999998765 23 1110
Q ss_pred -----------------------------------------------cCCCCCCCChh--HHHHHHHHHHHHHHHhCCCC
Q 020259 235 -----------------------------------------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPG 265 (328)
Q Consensus 235 -----------------------------------------------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~ 265 (328)
+-..|.+|+.. |+++++.++|++++.|+|++
T Consensus 226 p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~ 305 (435)
T cd01490 226 PPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDTNFHMDFITAASNLRARNYSIPP 305 (435)
T ss_pred ccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCchhHHHHHHHHhhhhHHHHcCCCc
Confidence 11123333332 77777788889999999999
Q ss_pred CchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCC
Q 020259 266 VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS 305 (328)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~ 305 (328)
.+....++++.+++|++++|+|+|+|+++.|++|+++++.
T Consensus 306 ~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~ 345 (435)
T cd01490 306 ADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKR 345 (435)
T ss_pred cCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCc
Confidence 9888999999999999999999999999999999999874
No 10
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.3e-47 Score=335.84 Aligned_cols=195 Identities=25% Similarity=0.334 Sum_probs=184.9
Q ss_pred CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (328)
Q Consensus 20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~ 99 (328)
.+||||+++||.++|++| ++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++||||++++|+|++||+++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L-~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~ 80 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRL-RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEAS 80 (197)
T ss_pred chhhHHHHHhCHHHHHHH-HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHH
Confidence 579999999999999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeeccee
Q 020259 100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 179 (328)
Q Consensus 100 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~ 179 (328)
+++|+++||+++++++...+.+...++++++|+||+|.++.+.+.++|+.| ++.++|++.+++.|+.
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c-------------~~~~ip~i~~~~~G~~ 147 (197)
T cd01492 81 LERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELC-------------RKLGVKFYATGVHGLF 147 (197)
T ss_pred HHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEecCCE
Confidence 999999999999999998887667889999999999999999999999999 6889999999999999
Q ss_pred eeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHH
Q 020259 180 GHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAE 259 (328)
Q Consensus 180 G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 259 (328)
|+++.++
T Consensus 148 G~v~~d~------------------------------------------------------------------------- 154 (197)
T cd01492 148 GFVFADL------------------------------------------------------------------------- 154 (197)
T ss_pred EEEEEec-------------------------------------------------------------------------
Confidence 9987421
Q ss_pred HhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcccccc
Q 020259 260 LFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASA 323 (328)
Q Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~~ 323 (328)
++|+++++|+++++|++|+++|+++|+.+++.||+.++.++.
T Consensus 155 ----------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~~~~ 196 (197)
T cd01492 155 ----------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSEAPI 196 (197)
T ss_pred ----------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCcCcc
Confidence 479999999999999999999999999999999999998875
No 11
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.4e-46 Score=337.18 Aligned_cols=224 Identities=32% Similarity=0.483 Sum_probs=199.0
Q ss_pred CCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259 21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (328)
Q Consensus 21 ~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a 98 (328)
||+||+++ ||.++|++| ++++|+|+|+||+|+++|++|+++|+|+|+|+|+|.|+++|++||+|++++|+|++||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L-~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKL-KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEA 79 (228)
T ss_pred CcceeechhhcCHHHHHHH-hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHH
Confidence 69999999 999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
++++|+++||+++++.++..+... ..++++++|+||+|+|+++.+.++++.| +++++|+|++++.|
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~-------------~~~~ip~i~~g~~g 146 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDAC-------------VKLGKPLVSGAVLG 146 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEEecc
Confidence 999999999999999999888543 3678899999999999999999999999 67889999999999
Q ss_pred eeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHH
Q 020259 178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR 257 (328)
Q Consensus 178 ~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (328)
+.|++.+..|+.++||.|.+...+... .+.
T Consensus 147 ~~g~v~~~~p~~~~c~~c~~~~~~~~~-~~~------------------------------------------------- 176 (228)
T cd00757 147 FEGQVTVFIPGEGPCYRCLFPEPPPPG-VPS------------------------------------------------- 176 (228)
T ss_pred CEEEEEEECCCCCCCccccCCCCCCCC-CCc-------------------------------------------------
Confidence 999999999999999999875322100 000
Q ss_pred HHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCC-CCceEEeecCccccccccc
Q 020259 258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-LSNYLTYAQLSFFASAMQF 326 (328)
Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~p-i~N~~~fdg~~~~~~~~~~ 326 (328)
....+.++|+++++|+++++|++|+|+|..+| ...++.||..+.....++|
T Consensus 177 ------------------~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~ 228 (228)
T cd00757 177 ------------------CAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL 228 (228)
T ss_pred ------------------cccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence 01236689999999999999999999998755 4799999999988777654
No 12
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-48 Score=360.67 Aligned_cols=267 Identities=40% Similarity=0.707 Sum_probs=243.0
Q ss_pred HHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcE
Q 020259 32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVN 111 (328)
Q Consensus 32 ~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~ 111 (328)
+.++.+ +++|||||||||+|||++|||++.|+++|+|||.|+++.+||+|||||+.++||++||.++++.+++.||+++
T Consensus 5 ~~~eai-~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~ 83 (603)
T KOG2013|consen 5 EKHEAI-KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIK 83 (603)
T ss_pred HHHHHh-ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCc
Confidence 445667 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCc--chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCC
Q 020259 112 IVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV 189 (328)
Q Consensus 112 v~~~~~~~~~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~ 189 (328)
+.++...+.+. +.+||.+||+|++|.||.++|+++|++| ....+|+|..|+.|+.|+++++++|.
T Consensus 84 l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C-------------~~a~vPLIesGt~Gf~GQv~~ii~Gk 150 (603)
T KOG2013|consen 84 LVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMC-------------LAASVPLIESGTGGFLGQVQVIIKGK 150 (603)
T ss_pred eEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHH-------------HhhcCCceecCcccccceEEEEecCC
Confidence 99999998764 6889999999999999999999999999 56789999999999999999999999
Q ss_pred CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhh-----------------------------------
Q 020259 190 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH----------------------------------- 234 (328)
Q Consensus 190 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------------------- 234 (328)
|.||+|.-. |.+..+|.|+++++|..+.||+.|+..+.|...+
T Consensus 151 TECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d 228 (603)
T KOG2013|consen 151 TECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETED 228 (603)
T ss_pred cceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchH
Confidence 999999853 5567799999999999999999998865555544
Q ss_pred --------------------------------------------------------------------------------
Q 020259 235 -------------------------------------------------------------------------------- 234 (328)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (328)
T Consensus 229 ~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v 308 (603)
T KOG2013|consen 229 LKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNV 308 (603)
T ss_pred HHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcce
Confidence
Q ss_pred ---------------------------cCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhH
Q 020259 235 ---------------------------SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNA 287 (328)
Q Consensus 235 ---------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~a 287 (328)
....|++++...++++..++|.+++-||++-.....+++|+.++.|.|++|+|
T Consensus 309 ~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNA 388 (603)
T KOG2013|consen 309 WTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNA 388 (603)
T ss_pred eeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhh
Confidence 12456778888999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEe
Q 020259 288 IISAACALETLKIASGCSKTLSNYLTY 314 (328)
Q Consensus 288 ivGG~~aqEviK~it~~~~pi~N~~~f 314 (328)
||||+++.|.+|+|+|...-.++.|.+
T Consensus 389 iIagliv~eaiKvl~~~~~~~~~~f~~ 415 (603)
T KOG2013|consen 389 IIAGLIVTEAIKVLGGDFDDCNMIFLA 415 (603)
T ss_pred HHHHHHHHHHHHHhccchhcceeeEEc
Confidence 999999999999998887766655554
No 13
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.1e-46 Score=340.28 Aligned_cols=240 Identities=21% Similarity=0.214 Sum_probs=202.3
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
-.++|.||+.++|.++|++| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL-~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve 84 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRL-RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE 84 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHH-hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence 35679999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCH--HHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
+++++++++||+++|++++..+.+.+ .++++++|+||+|+|++ ++|.++|+.| ++.++|+|.++
T Consensus 85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c-------------~~~~iP~V~~~ 151 (287)
T PRK08223 85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAAC-------------QQRGIPALTAA 151 (287)
T ss_pred HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHH-------------HHcCCCEEEEe
Confidence 99999999999999999999987655 67899999999999985 8999999999 67899999999
Q ss_pred ecceeeeEEEEcCCCCCccccccCCCCC--C---------CCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCC
Q 020259 175 TEGFKGHARVIIPGVTPCFECTIWLFPP--Q---------VKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD 243 (328)
Q Consensus 175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 243 (328)
+.|+.|++.++.|+ ++||+|+++.+++ . ...|.|.-....-.+
T Consensus 152 ~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~------------------------- 205 (287)
T PRK08223 152 PLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADP------------------------- 205 (287)
T ss_pred ccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccc-------------------------
Confidence 99999999988885 8999999987332 1 122333211111000
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC--CceEEeecCcccc
Q 020259 244 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNYLTYAQLSFFA 321 (328)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi--~N~~~fdg~~~~~ 321 (328)
. .. .+-+...|...++|.++|+++|.|++|+|+|.+++. .-+++||+.++..
T Consensus 206 -~--------------~~-----------~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~~~ 259 (287)
T PRK08223 206 -S--------------RV-----------DLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRSRY 259 (287)
T ss_pred -c--------------cc-----------ccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCceE
Confidence 0 00 001124688899999999999999999999998874 5899999998865
Q ss_pred cc
Q 020259 322 SA 323 (328)
Q Consensus 322 ~~ 323 (328)
..
T Consensus 260 ~~ 261 (287)
T PRK08223 260 VR 261 (287)
T ss_pred EE
Confidence 43
No 14
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.7e-46 Score=338.16 Aligned_cols=225 Identities=26% Similarity=0.430 Sum_probs=197.7
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka 96 (328)
.+||+||+++ ||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++++|+|++|+
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L-~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka 88 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKL-KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKV 88 (245)
T ss_pred HHHHHHhccchhcCHHHHHHh-cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHH
Confidence 3689999987 999999999 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
++++++|+++||+++++++...+++.+ .++++++|+||+|+|+.+.+.++|++| +++++|+|.+++
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~-------------~~~~ip~v~~~~ 155 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRAC-------------FAAKKPLVSGAA 155 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH-------------HHhCCEEEEeee
Confidence 999999999999999999999887644 568899999999999999999999999 678999999999
Q ss_pred cceeeeEEEEcCCC-CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259 176 EGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (328)
Q Consensus 176 ~G~~G~v~~~~p~~-~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (328)
.|+.|++.+..|+. ++||+|.++..++.. ..|
T Consensus 156 ~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--~~~--------------------------------------------- 188 (245)
T PRK05690 156 IRMEGQVTVFTYQDDEPCYRCLSRLFGENA--LTC--------------------------------------------- 188 (245)
T ss_pred ccCCceEEEEecCCCCceeeeccCCCCCCC--CCc---------------------------------------------
Confidence 99999999888764 799999975322100 000
Q ss_pred HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccccc
Q 020259 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQF 326 (328)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~~ 326 (328)
...+.++|+++++|+++|+|++|+|+|.++|+. -+++||..+..-..+++
T Consensus 189 ----------------------~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~ 239 (245)
T PRK05690 189 ----------------------VEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKL 239 (245)
T ss_pred ----------------------ccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEc
Confidence 012457999999999999999999999988875 56779999877665543
No 15
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=5.5e-46 Score=388.44 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=226.8
Q ss_pred CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (328)
Q Consensus 19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a 98 (328)
.++|+||+++||.++|+|| ++++|+|+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++
T Consensus 4 ~~lYsRQi~l~G~eaq~kL-~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea 82 (1008)
T TIGR01408 4 EALYSRQLYVLGDEAMQKM-AKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEA 82 (1008)
T ss_pred HhhhhhHHHhcCHHHHHHH-hhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHH
Confidence 4679999999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcccccc--ceEEEeeec
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI--KPMVDGGTE 176 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~p~i~~~~~ 176 (328)
++++|+++||.|+|++++..+ +.+++++||+||+|.++.+.+..+|++| ++++ +|||.+++.
T Consensus 83 ~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~t~~~~~~~~~in~~c-------------r~~~~~I~fI~~~~~ 146 (1008)
T TIGR01408 83 VVKKLAELNPYVHVSSSSVPF---NEEFLDKFQCVVLTEMSLPLQKEINDFC-------------HSQCPPIAFISADVR 146 (1008)
T ss_pred HHHHHHHHCCCceEEEecccC---CHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCeEEEEEeec
Confidence 999999999999999998766 3679999999999999999999999999 6777 999999999
Q ss_pred ceeeeEEEEcCCCCCccccccCCCCCCCC---------------------------------------------------
Q 020259 177 GFKGHARVIIPGVTPCFECTIWLFPPQVK--------------------------------------------------- 205 (328)
Q Consensus 177 G~~G~v~~~~p~~~~c~~c~~~~~~~~~~--------------------------------------------------- 205 (328)
|++|+++.+++.+..|+.-. +..|....
T Consensus 147 G~~G~vf~D~g~~f~~~d~~-ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~ 225 (1008)
T TIGR01408 147 GLFGSLFCDFGDEFEVLDTD-GEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVIS 225 (1008)
T ss_pred ceEEEEEecCCCceEEEeCC-CCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecC
Confidence 99999999887654443310 00000000
Q ss_pred -C----------------------------CcccccC---CC-----------CChhhHHHHHHHHhhhhhhcCCCCCCC
Q 020259 206 -F----------------------------PLCTLAE---TP-----------RTAAHCIEYAHLIKWDEVHSGKSFDPD 242 (328)
Q Consensus 206 -~----------------------------~~~~~~~---~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (328)
. .+.++.. .| +.+...+.+..+..|...+++.|. ..
T Consensus 226 ~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~-~~ 304 (1008)
T TIGR01408 226 PYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPN-VG 304 (1008)
T ss_pred CceEEeccccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHHHHHHcCCCCC-CC
Confidence 0 0000000 01 111111233344555555543333 23
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCC--CchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259 243 DPEHMQWVYSEAVKRAELFGIPG--VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF 320 (328)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~ 320 (328)
+.++.+.+...++++.++.++.. .+..+++.++..+..+++|+||++||++||||+|.+||++.|++|||+||+.++.
T Consensus 305 ~~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l 384 (1008)
T TIGR01408 305 CQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESL 384 (1008)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhC
Confidence 66777888888888888777643 3446888888888889999999999999999999999999999999999998765
Q ss_pred c
Q 020259 321 A 321 (328)
Q Consensus 321 ~ 321 (328)
.
T Consensus 385 ~ 385 (1008)
T TIGR01408 385 P 385 (1008)
T ss_pred C
Confidence 4
No 16
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-46 Score=333.32 Aligned_cols=221 Identities=28% Similarity=0.372 Sum_probs=197.6
Q ss_pred CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC-hHHHH
Q 020259 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK-PKAEV 98 (328)
Q Consensus 20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~-~Ka~a 98 (328)
++|+||+++||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||++++++|+|+ +|+++
T Consensus 8 ~ry~Rq~~~~g~~~q~~L-~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~ 86 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKL-KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLS 86 (231)
T ss_pred HHHhhHHHhcCHHHHHHH-hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHH
Confidence 689999999999999999 6999999999999999999999999999999999999999999999999999999 59999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
++++++++||+++|+++...+.+.+ .++++++|+||+|+|+.+++..++++| +++++|+|.+++.|
T Consensus 87 a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~-------------~~~~ip~i~g~~~g 153 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYA-------------HKKGIPLVHGAVEG 153 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEeecc
Confidence 9999999999999999988876543 568899999999999999999999999 67899999999999
Q ss_pred eeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHH
Q 020259 178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR 257 (328)
Q Consensus 178 ~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (328)
+.|++.+..|+.++||+|.++..++ .+
T Consensus 154 ~~G~v~~~~p~~~~c~~~~~~~~~~-----~~------------------------------------------------ 180 (231)
T PRK08328 154 TYGQVTTIVPGKTKRLREIFPKVKK-----KK------------------------------------------------ 180 (231)
T ss_pred CEEEEEEECCCCCCCHHHhCCCCCC-----cc------------------------------------------------
Confidence 9999999999999999998742110 00
Q ss_pred HHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCce-EEeecCccccccccc
Q 020259 258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYAQLSFFASAMQF 326 (328)
Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~-~~fdg~~~~~~~~~~ 326 (328)
...|.++|+++++|+++|+|++|+|+|.++|+.|. ++||..+..-..++|
T Consensus 181 -------------------~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 231 (231)
T PRK08328 181 -------------------GKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL 231 (231)
T ss_pred -------------------ccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence 00134789999999999999999999998888665 779999988777664
No 17
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=7.2e-46 Score=352.23 Aligned_cols=228 Identities=25% Similarity=0.350 Sum_probs=201.1
Q ss_pred cCCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259 18 RAGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95 (328)
Q Consensus 18 ~~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K 95 (328)
..++|+||+++ ||.++|++| ++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++|
T Consensus 5 ~~~rY~Rq~~l~~~g~~~q~~L-~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K 83 (355)
T PRK05597 5 DIARYRRQIMLGEIGQQGQQSL-FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK 83 (355)
T ss_pred HHhHhhheechhhcCHHHHHHH-hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChH
Confidence 34689999999 999999999 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
|++++++|+++||.++|+++...+...+ .++++++|+||+|+|+...|..+|+.| ++.++|+|.++
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c-------------~~~~ip~v~~~ 150 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA-------------ARLGIPHVWAS 150 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEE
Confidence 9999999999999999999998887543 678999999999999999999999999 67899999999
Q ss_pred ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (328)
Q Consensus 175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (328)
+.|+.|++.++.|+.++||+|+++..++....+.|.
T Consensus 151 ~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~-------------------------------------------- 186 (355)
T PRK05597 151 ILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS-------------------------------------------- 186 (355)
T ss_pred EecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCcc--------------------------------------------
Confidence 999999999888888999999986433222222221
Q ss_pred HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF 326 (328)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~ 326 (328)
..+.++|+.+++|+++|.|++|+|+|.++|+.| ++.||..+.....+.+
T Consensus 187 -----------------------~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~ 236 (355)
T PRK05597 187 -----------------------QAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPV 236 (355)
T ss_pred -----------------------ccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEec
Confidence 124589999999999999999999998877665 6679998876655543
No 18
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.3e-45 Score=323.78 Aligned_cols=191 Identities=21% Similarity=0.306 Sum_probs=179.2
Q ss_pred CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCC--CCCCChHHHH
Q 020259 21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRM--EDVGKPKAEV 98 (328)
Q Consensus 21 ~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~--~diG~~Ka~a 98 (328)
+||||+++||.++|++| ++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+++|++||||+++ +|+|++||++
T Consensus 1 ~y~Rqi~l~G~~~q~~L-~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~ 79 (198)
T cd01485 1 LYDRQIRLWGDEAQNKL-RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAA 79 (198)
T ss_pred CccceeeccCHHHHHHH-hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHH
Confidence 69999999999999999 69999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHhhCCCcEEEEEecccC---CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 99 AAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
++++|+++||+++++++.+.+. +...++++++|+||+|.|+...+.++|++| +++++|+|.+++
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c-------------~~~~ip~i~~~~ 146 (198)
T cd01485 80 SYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVC-------------RKHHIPFISCAT 146 (198)
T ss_pred HHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEe
Confidence 9999999999999999988774 345788999999999999999999999999 688999999999
Q ss_pred cceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259 176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (328)
Q Consensus 176 ~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (328)
.|+.|++++++
T Consensus 147 ~G~~G~v~~~~--------------------------------------------------------------------- 157 (198)
T cd01485 147 YGLIGYAFFDF--------------------------------------------------------------------- 157 (198)
T ss_pred ecCEEEEEEch---------------------------------------------------------------------
Confidence 99999987421
Q ss_pred HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccccc
Q 020259 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFAS 322 (328)
Q Consensus 256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~ 322 (328)
|+++++|+++++|++|+++|+++|+.++++||+.+..++
T Consensus 158 ----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~~~~ 196 (198)
T cd01485 158 ----------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFESTGP 196 (198)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccccCC
Confidence 678999999999999999999999999999999998876
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.1e-45 Score=354.79 Aligned_cols=227 Identities=28% Similarity=0.366 Sum_probs=200.5
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka 96 (328)
.++|+||+++ ||.++|++| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L-~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka 94 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRL-KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKI 94 (390)
T ss_pred HHHhhceechhhcCHHHHHHH-hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHH
Confidence 3689999999 999999999 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 97 EVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 97 ~a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
++++++|+++||.++|+++...+... ..++++++|+||+|+|+.+.|.++|++| ++.++|++++++
T Consensus 95 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~-------------~~~~~p~v~~~~ 161 (390)
T PRK07411 95 ESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC-------------VLLNKPNVYGSI 161 (390)
T ss_pred HHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEE
Confidence 99999999999999999999988764 3678999999999999999999999999 677899999999
Q ss_pred cceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259 176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (328)
Q Consensus 176 ~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (328)
.|+.|++.++.|+.++||+|+++..++....+.|.
T Consensus 162 ~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~--------------------------------------------- 196 (390)
T PRK07411 162 FRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA--------------------------------------------- 196 (390)
T ss_pred ccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc---------------------------------------------
Confidence 99999999887778999999986433221122220
Q ss_pred HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccccc
Q 020259 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQF 326 (328)
Q Consensus 256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~~ 326 (328)
..+.++|+++++|.++|+|++|+|+|.++|+. .+++||+.+.....+.+
T Consensus 197 ----------------------~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~ 246 (390)
T PRK07411 197 ----------------------EGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKL 246 (390)
T ss_pred ----------------------cCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEec
Confidence 12458999999999999999999999876655 56779999887766654
No 20
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.9e-45 Score=328.70 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=195.0
Q ss_pred CCCCCCCCCcc--HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 20 GNLVGPTFEPG--TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 20 ~~~~rq~~l~G--~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
++|+||+++|| .++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++++|+|++||+
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L-~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEAL-KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred cceeeeeecccCCHHHHHHH-hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 68999999985 8999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~ 176 (328)
+++++|+++||++++++++..+++. ..++++++|+||+|+|+++.+.++|++| ++.++|+|.+++.
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~-------------~~~~ip~v~~~~~ 148 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC-------------FAAKVPLVSGAAI 148 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEEec
Confidence 9999999999999999999888754 3678899999999999999999999999 6789999999999
Q ss_pred ceeeeEEEEc-CCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259 177 GFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV 255 (328)
Q Consensus 177 G~~G~v~~~~-p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (328)
|+.|++.+.. ++.++||+|..+.+++.. ..|
T Consensus 149 g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--~~~---------------------------------------------- 180 (240)
T TIGR02355 149 RMEGQVSVFTYQDGEPCYRCLSRLFGENA--LSC---------------------------------------------- 180 (240)
T ss_pred ccEeEEEEEecCCCCCccccccccCCCCC--CCc----------------------------------------------
Confidence 9999987654 456799999875332100 000
Q ss_pred HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-CceEEeecCccccccccc
Q 020259 256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYAQLSFFASAMQF 326 (328)
Q Consensus 256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-~N~~~fdg~~~~~~~~~~ 326 (328)
...+.++|+++++|+++|+|++|+|+|.++|+ +..+.||..+.....+++
T Consensus 181 ---------------------~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~ 231 (240)
T TIGR02355 181 ---------------------VEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKL 231 (240)
T ss_pred ---------------------cccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEec
Confidence 01245899999999999999999999988887 456779999887766554
No 21
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=7.9e-45 Score=345.96 Aligned_cols=227 Identities=30% Similarity=0.445 Sum_probs=199.9
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka 96 (328)
.+||+||+++ ||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++|+++|+|++||
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l-~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka 97 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERL-HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKV 97 (370)
T ss_pred HHHhhcccchhhhCHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHH
Confidence 4689999999 999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
++++++|+++||+++++++...+...+ .++++++|+||+|+|+.++|.++|++| ++.++|+|.+++
T Consensus 98 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~-------------~~~~iP~v~~~~ 164 (370)
T PRK05600 98 EVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA-------------EITGTPLVWGTV 164 (370)
T ss_pred HHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEE
Confidence 999999999999999999999887643 678999999999999999999999999 678999999999
Q ss_pred cceeeeEEEEcCC---CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHH
Q 020259 176 EGFKGHARVIIPG---VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS 252 (328)
Q Consensus 176 ~G~~G~v~~~~p~---~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (328)
.|+.|++.++.|+ .++||+|+++..++....+.|+
T Consensus 165 ~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~------------------------------------------ 202 (370)
T PRK05600 165 LRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA------------------------------------------ 202 (370)
T ss_pred ecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCc------------------------------------------
Confidence 9999999887765 3789999985433211111120
Q ss_pred HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF 326 (328)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~ 326 (328)
..+.++|+.+++|+++|.|++|+|+|.++|+.| .+.||+.+..-..+++
T Consensus 203 -------------------------~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~ 252 (370)
T PRK05600 203 -------------------------TAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRV 252 (370)
T ss_pred -------------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEe
Confidence 124589999999999999999999998777665 8999999987766554
No 22
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=6e-45 Score=320.66 Aligned_cols=165 Identities=31% Similarity=0.494 Sum_probs=156.6
Q ss_pred CCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259 21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (328)
Q Consensus 21 ~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a 98 (328)
|||||+++ ||.++|++| ++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||+||+++|+|++||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl-~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRL-LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV 79 (202)
T ss_pred CCcceecchhcCHHHHHHh-cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence 69999999 999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
++++|+++||+++++.++..+...+ .++++++|+||+|+|+.+.+.++++.| +++++|+|.+++.|
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~-------------~~~~ip~i~~~~~g 146 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC-------------VALGTPLISAAVVG 146 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEecc
Confidence 9999999999999999998887543 568899999999999999999999999 67899999999999
Q ss_pred eeeeEEEEcCC-CCCccccccCC
Q 020259 178 FKGHARVIIPG-VTPCFECTIWL 199 (328)
Q Consensus 178 ~~G~v~~~~p~-~~~c~~c~~~~ 199 (328)
+.|++.++.|+ .++||+|.++.
T Consensus 147 ~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 147 FGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CeEEEEEEeCCCCCCChhhcCCC
Confidence 99999999888 79999999853
No 23
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=339.45 Aligned_cols=290 Identities=19% Similarity=0.223 Sum_probs=237.4
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
-..+||||+|+||.++|..| ..++|+++|||++|+|++|||+++|||++|++|...|+.+|++.+||...+++|++||+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~l-e~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~ 84 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAAL-ESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAE 84 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhh-hhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHH
Confidence 45789999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccC---CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
+.++.|+++||.|+-....+..+ ..+.+++++|++|+.+--+.+....+.++| |+.++|++.+.
T Consensus 85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l-------------~~~~vpll~~r 151 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEIL-------------REANVPLLLTR 151 (523)
T ss_pred HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHH-------------HhcCCceEEEe
Confidence 99999999999998776655443 457899999999999988888888899999 78999999999
Q ss_pred ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCC--------------------hhhHHHHHHHHhhhhhh
Q 020259 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRT--------------------AAHCIEYAHLIKWDEVH 234 (328)
Q Consensus 175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~~ 234 (328)
+.|+.|++++.+..| |+.+.+|+....+++.-.++|.. |..-+.+..+..|...+
T Consensus 152 s~Gl~G~iRI~ikEH-----~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~ 226 (523)
T KOG2016|consen 152 SYGLAGTIRISIKEH-----TIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQH 226 (523)
T ss_pred eecceEEEEEEeeec-----cccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhh
Confidence 999999999998775 46777777654444443333332 22223444555666555
Q ss_pred --------------------------------------------------------------------------------
Q 020259 235 -------------------------------------------------------------------------------- 234 (328)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (328)
T Consensus 227 n~~~p~t~~ekk~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv 306 (523)
T KOG2016|consen 227 NGNLPSTYDEKKEFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFV 306 (523)
T ss_pred cCCCCccHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 020259 235 -------------------------------------------------------------------------------- 234 (328)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (328)
T Consensus 307 ~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~ 386 (523)
T KOG2016|consen 307 LKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRG 386 (523)
T ss_pred cccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeec
Confidence
Q ss_pred -----------------------------------------cCCCCCCC--ChhHHHHHHHHHHHHHHHhCCCC--Cchh
Q 020259 235 -----------------------------------------SGKSFDPD--DPEHMQWVYSEAVKRAELFGIPG--VTYS 269 (328)
Q Consensus 235 -----------------------------------------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~~--~~~~ 269 (328)
...+++.+ -..+...+...+.....++|.++ ...+
T Consensus 387 ~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~ 466 (523)
T KOG2016|consen 387 RTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDD 466 (523)
T ss_pred chhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHH
Confidence 11122221 12345555555666777888885 3336
Q ss_pred hhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccccccccc
Q 020259 270 LTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQF 326 (328)
Q Consensus 270 ~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~~~~~ 326 (328)
.+.++++....+++.++|++||++|||+||+||+|+.|++|+|+|||++...-+|.+
T Consensus 467 ~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~SaT~Kl 523 (523)
T KOG2016|consen 467 AIHEICRFGAAELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQESATFKL 523 (523)
T ss_pred HHHHHHhcCCchhHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccccceecC
Confidence 889999999999999999999999999999999999999999999999998877653
No 24
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.9e-44 Score=345.59 Aligned_cols=227 Identities=27% Similarity=0.411 Sum_probs=197.5
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka 96 (328)
.++|+||+++ ||.++|++| ++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||
T Consensus 20 ~~ry~Rq~~l~~~g~~~q~~L-~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka 98 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQKRL-KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKA 98 (392)
T ss_pred HHHhhheechhhcCHHHHHHH-hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHH
Confidence 3789999999 999999999 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
++++++|+++||+++|+++...++..+ .++++++|+||+|+|+...+.++|++| ++.++|+|.+++
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~-------------~~~~~p~v~~~~ 165 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA-------------VLAGKPYVWGSI 165 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEe
Confidence 999999999999999999998887543 678999999999999999999999999 678999999999
Q ss_pred cceeeeEEEEcC----CCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHH
Q 020259 176 EGFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 251 (328)
Q Consensus 176 ~G~~G~v~~~~p----~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (328)
.|+.|+++++.+ +.++||+|.++..+.....+.|.
T Consensus 166 ~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~----------------------------------------- 204 (392)
T PRK07878 166 YRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA----------------------------------------- 204 (392)
T ss_pred ccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCc-----------------------------------------
Confidence 999999997764 37899999875322211111110
Q ss_pred HHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-CceEEeecCccccccccc
Q 020259 252 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYAQLSFFASAMQF 326 (328)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-~N~~~fdg~~~~~~~~~~ 326 (328)
..+.++|+++++|+++|+|++|+|+|.++|+ .-+++||+.+..-..+++
T Consensus 205 --------------------------~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~ 254 (392)
T PRK07878 205 --------------------------EGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKI 254 (392)
T ss_pred --------------------------cCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEee
Confidence 0235899999999999999999999988776 567789999887665543
No 25
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-45 Score=360.61 Aligned_cols=282 Identities=35% Similarity=0.566 Sum_probs=252.1
Q ss_pred ccchhhhhhhhcCC---------------CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCC-----e
Q 020259 7 SRSRDLDKLLLRAG---------------NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----N 66 (328)
Q Consensus 7 ~~~~~~~~~~~~~~---------------~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg-----~ 66 (328)
-||.|+|.++..++ |||.|+.++|.+.|+|| .+.++++||+|++|||.+||++++|+| .
T Consensus 383 ~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL-~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ 461 (1013)
T KOG2012|consen 383 KQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKL-ADQKVFLVGAGAIGCELLKNFALMGVGCGNSGK 461 (1013)
T ss_pred hHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHH-hhCcEEEEccchhhHHHHHhhhheeeccCCCCc
Confidence 49999998877653 89999999999999999 699999999999999999999999994 7
Q ss_pred EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC-----cchhhhccCCEEEecCCCHH
Q 020259 67 LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 67 itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~d~~~ 141 (328)
|++.|+|.++.+||+|||||++.|||++|+++++.....+||+++|+++..++.. .+++||.+-|+|.++.||.+
T Consensus 462 ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVd 541 (1013)
T KOG2012|consen 462 ITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVD 541 (1013)
T ss_pred eEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchh
Confidence 9999999999999999999999999999999999999999999999999998865 35889999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhH
Q 020259 142 ARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHC 221 (328)
Q Consensus 142 ~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (328)
+|+++++-| .-+.+|++.+|+.|..|..++++|..|..|.... .|+++++|.|+++++|...+|+
T Consensus 542 AR~YvD~RC-------------v~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~--DPPEksiP~CTlknFPn~IeHT 606 (1013)
T KOG2012|consen 542 ARRYVDRRC-------------VYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKSIPVCTLKSFPNAIEHT 606 (1013)
T ss_pred hhhhhhhhh-------------hhhccchhhccCcCCccceeEEeccccccccccC--CCcccCCceeeeccCchHHHHH
Confidence 999999999 3557999999999999999999999999997554 4888999999999999999999
Q ss_pred HHHHHHH--------------------------------------------------------hhhhhh-----------
Q 020259 222 IEYAHLI--------------------------------------------------------KWDEVH----------- 234 (328)
Q Consensus 222 i~~~~~~--------------------------------------------------------~~~~~~----------- 234 (328)
++|+... .|...+
T Consensus 607 iqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikq 686 (1013)
T KOG2012|consen 607 IQWARDEFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQ 686 (1013)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence 9998541 111100
Q ss_pred --------------------------------------------------------------------------------
Q 020259 235 -------------------------------------------------------------------------------- 234 (328)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (328)
T Consensus 687 Ll~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~ 766 (1013)
T KOG2012|consen 687 LLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQK 766 (1013)
T ss_pred hhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccC
Confidence
Q ss_pred -----------------------------------------cCCCCCCCCh--hHHHHHHHHHHHHHHHhCCCCCchhhh
Q 020259 235 -----------------------------------------SGKSFDPDDP--EHMQWVYSEAVKRAELFGIPGVTYSLT 271 (328)
Q Consensus 235 -----------------------------------------~~~~~~~~~~--~~~~~l~~~~~~~~~~~~i~~~~~~~~ 271 (328)
.+..+.+++. -|++++..++|++|++|.|++.+....
T Consensus 767 ~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~ 846 (1013)
T KOG2012|consen 767 VKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKT 846 (1013)
T ss_pred CeecccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhh
Confidence 1122333333 499999999999999999999999889
Q ss_pred HhhhhccCccccchhHHHHHHHHHHHHHHHhcC
Q 020259 272 QGVVKNIIPAIASTNAIISAACALETLKIASGC 304 (328)
Q Consensus 272 ~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~ 304 (328)
+.++..++|+|++|.|.+.|+++.|++|++.|+
T Consensus 847 K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~ 879 (1013)
T KOG2012|consen 847 KRIAGKIIPAIATTTAAVSGLVCLELYKVVDGK 879 (1013)
T ss_pred heeeeeEEEEEeehhHHHHHHHHhhhhhhccCC
Confidence 999999999999999999999999999999994
No 26
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.6e-42 Score=326.79 Aligned_cols=224 Identities=27% Similarity=0.377 Sum_probs=196.7
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCC--Ch
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KP 94 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG--~~ 94 (328)
.++|+||+++ ||.++|++| ++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+| ++
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L-~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~ 80 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKL-REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLP 80 (339)
T ss_pred cchhhhhhchhhcCHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCc
Confidence 3689999988 999999999 799999999999999999999999999999999999999999999999999995 59
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259 95 KAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (328)
Q Consensus 95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~ 173 (328)
|+++++++++++||.++++++...+...+ .++++++|+||+|+|+.+.+.++|++| ++.++|+|.+
T Consensus 81 Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~-------------~~~~iP~i~~ 147 (339)
T PRK07688 81 KAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA-------------QKYGIPWIYG 147 (339)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH-------------HHhCCCEEEE
Confidence 99999999999999999999988886544 678899999999999999999999999 6778999999
Q ss_pred eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259 174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (328)
Q Consensus 174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (328)
++.|+.|++.++.|+.++||+|+++..|... +.|
T Consensus 148 ~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~c-------------------------------------------- 181 (339)
T PRK07688 148 ACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--ATC-------------------------------------------- 181 (339)
T ss_pred eeeeeeeEEEEECCCCCCCeEeecCCCCCCC--CCC--------------------------------------------
Confidence 9999999999888999999999985433210 011
Q ss_pred HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCce-EEeecCcccccccc
Q 020259 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYAQLSFFASAMQ 325 (328)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~-~~fdg~~~~~~~~~ 325 (328)
...+.++|+++++|+++|+|++|+|+|.++++.+. +.||..+.....++
T Consensus 182 -----------------------~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~ 231 (339)
T PRK07688 182 -----------------------DTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMN 231 (339)
T ss_pred -----------------------ccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEE
Confidence 00134789999999999999999999998776655 57999988766654
No 27
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=327.37 Aligned_cols=225 Identities=28% Similarity=0.395 Sum_probs=196.1
Q ss_pred CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCC--Ch
Q 020259 19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KP 94 (328)
Q Consensus 19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG--~~ 94 (328)
.++|+||+++ ||.++|++| ++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++|+++|+| ++
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L-~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~ 80 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKI-REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKP 80 (338)
T ss_pred cchhhhhhchhhcCHHHHHhh-cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCcc
Confidence 3689999998 899999999 799999999999999999999999999999999999999999999999999985 89
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259 95 KAEVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (328)
Q Consensus 95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~ 173 (328)
||++++++|+++||+++++++...+... ..++++++|+||+|+|+.+++..+|++| ++.++|+|.+
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~-------------~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS-------------QKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEE
Confidence 9999999999999999999998887643 3667899999999999999999999999 6789999999
Q ss_pred eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259 174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (328)
Q Consensus 174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (328)
++.|+.|++.++.|+.++||+|+++..|... ..|
T Consensus 148 ~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~c-------------------------------------------- 181 (338)
T PRK12475 148 GCVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--ATC-------------------------------------------- 181 (338)
T ss_pred EecccEEEEEEECCCCCCCHHHhcCCCCCCC--CCC--------------------------------------------
Confidence 9999999999999999999999985332100 001
Q ss_pred HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF 326 (328)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~ 326 (328)
...+.++|+.+++|++++.|++|+|+|...++.+ ++.||..+..-..+.+
T Consensus 182 -----------------------~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~ 232 (338)
T PRK12475 182 -----------------------DTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKV 232 (338)
T ss_pred -----------------------ccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEe
Confidence 0123478999999999999999999998877765 5579999876555443
No 28
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.6e-41 Score=325.58 Aligned_cols=225 Identities=28% Similarity=0.427 Sum_probs=196.7
Q ss_pred CCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 20 ~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
++|+||+++ ||.++|++| ++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||++++++|+|++||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l-~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~ 192 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRL-LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVD 192 (376)
T ss_pred HHHHHhcchhhcCHHHHHHH-hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHH
Confidence 579999999 999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~ 176 (328)
+++++++++||.++++.+...+.+.+ .++++++|+||+|+|+.+.|.++|++| ++.++|+|.+++.
T Consensus 193 ~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~-------------~~~~ip~i~~~~~ 259 (376)
T PRK08762 193 SAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC-------------VKLGKPLVYGAVF 259 (376)
T ss_pred HHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEec
Confidence 99999999999999999988876543 567899999999999999999999999 6789999999999
Q ss_pred ceeeeEEEEcCCC----CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHH
Q 020259 177 GFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS 252 (328)
Q Consensus 177 G~~G~v~~~~p~~----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (328)
|+.|++.++.|+. ++||+|.++..+.....+.|
T Consensus 260 g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~------------------------------------------- 296 (376)
T PRK08762 260 RFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSC------------------------------------------- 296 (376)
T ss_pred cCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCC-------------------------------------------
Confidence 9999999988876 89999997532211111111
Q ss_pred HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCcccccccc
Q 020259 253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQ 325 (328)
Q Consensus 253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~ 325 (328)
...+.++|+++++|+++|+|++|+|+|.+.|+. .++.||+.+.....+.
T Consensus 297 ------------------------~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~~~ 346 (376)
T PRK08762 297 ------------------------AEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELR 346 (376)
T ss_pred ------------------------ccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEe
Confidence 012457999999999999999999999988764 6788999987755544
No 29
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=320.18 Aligned_cols=286 Identities=22% Similarity=0.296 Sum_probs=225.5
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
..+-|+||+++.|.++++|| ..++|||.|++|+|.||||||+|+||+++||.|...+..+||+.||+++++|||++||+
T Consensus 16 DE~LYSRQLYVlG~eAM~~m-~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~ 94 (1013)
T KOG2012|consen 16 DESLYSRQLYVLGHEAMRRM-QGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE 94 (1013)
T ss_pred hhhhhhhhhhhccHHHHHHH-hhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence 34569999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
+..++|+++|+.|.|.+++..+ ..+++++|++||.+..+.+....+|++| +++++.||.+.+.|
T Consensus 95 as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fc-------------h~~~i~fi~ad~RG 158 (1013)
T KOG2012|consen 95 ASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFC-------------HSHGIAFIAADTRG 158 (1013)
T ss_pred HHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHH-------------HhcCeEEEEeccch
Confidence 9999999999999999998775 4899999999999988899999999999 78899999999999
Q ss_pred eeeeEEEEcCCCCCccc-----------------------cccCC-----------CCCCC---CCCcccccC-------
Q 020259 178 FKGHARVIIPGVTPCFE-----------------------CTIWL-----------FPPQV---KFPLCTLAE------- 213 (328)
Q Consensus 178 ~~G~v~~~~p~~~~c~~-----------------------c~~~~-----------~~~~~---~~~~~~~~~------- 213 (328)
+.|++|.++.+...|++ |+-+. +.+-+ ...-|+...
T Consensus 159 Lfg~lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~ 238 (1013)
T KOG2012|consen 159 LFGQLFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPY 238 (1013)
T ss_pred hhhhhhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCc
Confidence 99999999876655543 11100 00000 000011000
Q ss_pred -----------------------CCC--------------------------ChhhHHHHHHHHhhhhhhcCCCCCCCCh
Q 020259 214 -----------------------TPR--------------------------TAAHCIEYAHLIKWDEVHSGKSFDPDDP 244 (328)
Q Consensus 214 -----------------------~~~--------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 244 (328)
.|+ -+..-+.|..+-.|...+++.|.+.+ +
T Consensus 239 sf~Igdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~-e 317 (1013)
T KOG2012|consen 239 SFSIGDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGN-E 317 (1013)
T ss_pred eEEeccccchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCC-h
Confidence 011 11111345556677777766555443 4
Q ss_pred hHHHHHHHHHHHHHHHhCCC-CCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcccc
Q 020259 245 EHMQWVYSEAVKRAELFGIP-GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFA 321 (328)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~ 321 (328)
++.+.+...+..+.+..+.. +.++.+++.+.-.+...+.|++|++||++|||++|..|||+.|+.+||+||..++..
T Consensus 318 ~DA~~l~~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP 395 (1013)
T KOG2012|consen 318 EDAEELVELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLP 395 (1013)
T ss_pred hhHHHHHHHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCC
Confidence 44445555555555544432 344578888888888999999999999999999999999999999999999987754
No 30
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.8e-40 Score=296.30 Aligned_cols=226 Identities=28% Similarity=0.394 Sum_probs=200.5
Q ss_pred cCCCCCCCCCCc--cHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259 18 RAGNLVGPTFEP--GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95 (328)
Q Consensus 18 ~~~~~~rq~~l~--G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K 95 (328)
.-.||+||+-++ |..+|.+| ++++||||||||+||.++..|+.+|+|+|.|+|.|.|+.+|+.||.+++++.+|+.|
T Consensus 43 ei~RYsRQlilpe~gV~GQ~~L-k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~K 121 (427)
T KOG2017|consen 43 EILRYSRQLILPEFGVHGQLSL-KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHK 121 (427)
T ss_pred HHHhhhheeecccccccccccc-CCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHH
Confidence 346899999885 89999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
|++++..++++||.++|+.+++.+...+ .+.+++||+|++|+||..+|..+++.| ...++|++.+.
T Consensus 122 a~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~C-------------VlLgkpLVSgS 188 (427)
T KOG2017|consen 122 AESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVC-------------VLLGKPLVSGS 188 (427)
T ss_pred HHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHH-------------HHcCCcccccc
Confidence 9999999999999999999999988755 788999999999999999999999999 45689999999
Q ss_pred ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (328)
Q Consensus 175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (328)
.-++.|++.+.--...+||+|+++..|+.+....|.
T Consensus 189 aLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~-------------------------------------------- 224 (427)
T KOG2017|consen 189 ALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCA-------------------------------------------- 224 (427)
T ss_pred cccccceeEEeecCCCceeeecCCCCcChHHhcccc--------------------------------------------
Confidence 999999998877678999999998665433322220
Q ss_pred HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccc
Q 020259 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAM 324 (328)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~ 324 (328)
-...+.|++.++|.+.|.|++|+++|-++++. -.++|||.++.-..+
T Consensus 225 -----------------------dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~i 272 (427)
T KOG2017|consen 225 -----------------------DGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTI 272 (427)
T ss_pred -----------------------cCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEE
Confidence 12358999999999999999999999886655 678999999865444
No 31
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-37 Score=280.86 Aligned_cols=222 Identities=35% Similarity=0.586 Sum_probs=194.9
Q ss_pred cCCCCCCCCCCccHH--HHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259 18 RAGNLVGPTFEPGTE--LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~--~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K 95 (328)
.-++|+||+++|+.. +|++| +.++|+++|+||+|++++++|+++|+|+++|+|+|.|+.+|+.||++++++|+|++|
T Consensus 7 ~~~ry~Rqi~l~~~~~~~q~~l-~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~K 85 (254)
T COG0476 7 EIERYSRQILLPGIGGEGQQKL-KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPK 85 (254)
T ss_pred HHHhhcceeeecccCHHHHHHH-hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcH
Confidence 346899999998655 49999 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
++++++.++++||.++++++...+...+ .++++++|+|++|+|+..+|..+|+.| ...++|+++++
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~-------------~~~~~pli~~~ 152 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDAC-------------VKLGIPLVHGG 152 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHH-------------HHhCCCeEeee
Confidence 9999999999999999999999887765 588999999999999999999999999 56789999999
Q ss_pred ecceeeeEEEEcCC-CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259 175 TEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (328)
Q Consensus 175 ~~G~~G~v~~~~p~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (328)
+.|+.|+++++.|+ .++||+|+++..++....+.
T Consensus 153 ~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~--------------------------------------------- 187 (254)
T COG0476 153 AIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPT--------------------------------------------- 187 (254)
T ss_pred eccceEEEEEEecCCCCCcccccCCCCCCcccccc---------------------------------------------
Confidence 99999999999999 59999999976664221110
Q ss_pred HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCC-CC-CCceEEeecCcc
Q 020259 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KT-LSNYLTYAQLSF 319 (328)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~-~p-i~N~~~fdg~~~ 319 (328)
.+.. ...+.|++.++|.+++.|++|.+++.+ .| +...+.||..+.
T Consensus 188 ---~c~~------------------~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~ 234 (254)
T COG0476 188 ---SCDE------------------AGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDM 234 (254)
T ss_pred ---cccc------------------CCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhc
Confidence 0001 133678889999999999999999997 55 567888888776
No 32
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=317.60 Aligned_cols=248 Identities=18% Similarity=0.238 Sum_probs=198.6
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
+..+|+||+++||.++|+|| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL-~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kae 389 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRL-LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLD 389 (989)
T ss_pred HHHHhhchHhhcCHHHHHHH-hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHH
Confidence 34689999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCH--HHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
+++++++++||+++|+++++.+... ..++++++|+||+|+|+. +.++++++.| ++.++|+|.++
T Consensus 390 vaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c-------------~~~~IP~I~ag 456 (989)
T PRK14852 390 VMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA-------------LELGIPVITAG 456 (989)
T ss_pred HHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH-------------HHcCCCEEEee
Confidence 9999999999999999999988664 477899999999999974 5677888888 67899999999
Q ss_pred ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259 175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254 (328)
Q Consensus 175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (328)
+.|+.|++.++.|+ ..||+|.++..+..+.. |.+ +.| .. + + .+..-++..+
T Consensus 457 ~~G~~g~v~v~~p~-~~~~~~~f~~~~~~p~~-------------~~~-----~~~-~l-~---~-~p~~~~~~~~---- 507 (989)
T PRK14852 457 PLGYSCALLVFMPG-GMNFDSYFGIDDDTPPM-------------EGY-----LRF-GM-G---L-APRPAHLGYM---- 507 (989)
T ss_pred ccccCeeEEEEcCC-CCCHHHhCCCCCCCchH-------------hhh-----hhh-hc-c---C-Ccchhhhccc----
Confidence 99999999998886 48999998654431110 000 000 00 0 0 0001111111
Q ss_pred HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCC--CCCceEEeecCcccc
Q 020259 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK--TLSNYLTYAQLSFFA 321 (328)
Q Consensus 255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~--pi~N~~~fdg~~~~~ 321 (328)
+. ... .+...-.|++++.|.+-||+++.|++|++.|+++ +.+-++.||...+.-
T Consensus 508 -------~~--~~~----~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~qfd~~~~~~ 563 (989)
T PRK14852 508 -------DR--RFV----SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQFDPLTGRH 563 (989)
T ss_pred -------Cc--ccc----cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhccchhhccc
Confidence 00 000 2223457999999999999999999999999853 677889999877653
No 33
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=306.81 Aligned_cols=251 Identities=20% Similarity=0.284 Sum_probs=199.4
Q ss_pred hhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC
Q 020259 14 KLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK 93 (328)
Q Consensus 14 ~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~ 93 (328)
......++|+||+++||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++.+|+|+
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL-~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERL-AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHH-hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence 333455889999999999999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCC--HHHHHHHHHHHHHhhhccCCCCccccccceE
Q 020259 94 PKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREETIKPM 170 (328)
Q Consensus 94 ~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~--~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~ 170 (328)
+|+++++++++++||.++|++++..+++.+ .++++++|+||+|+|+ .+.+.++++.| ++.++|+
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c-------------~~~~iP~ 163 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMA-------------REKGIPV 163 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHH-------------HHCCCCE
Confidence 999999999999999999999999998765 6789999999999996 56888999999 6789999
Q ss_pred EEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHH
Q 020259 171 VDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWV 250 (328)
Q Consensus 171 i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (328)
|.+++.|+.|++.++.|+ +.||.|.++..+.-++ .+..+.+.. -..|.+. +..++
T Consensus 164 i~~g~~G~~g~~~~~~p~-~~~~~~~~~~~~~~~~------------~~~~~~~~~------g~~p~~~------~~~~~ 218 (679)
T PRK14851 164 ITAGPLGYSSAMLVFTPQ-GMGFDDYFNIGGKMPE------------EQKYLRFAM------GLAPRPT------HIKYM 218 (679)
T ss_pred EEeecccccceEEEEcCC-CCCHhHhccCCCCCCh------------HHHHHHHHh------cCCCcch------hhccC
Confidence 999999999999998887 7899998865443100 001111100 0000000 00000
Q ss_pred HHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCC--CCCceEEeecCccc
Q 020259 251 YSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK--TLSNYLTYAQLSFF 320 (328)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~--pi~N~~~fdg~~~~ 320 (328)
+...+ .+...-.|.....|-..+|+.+.|++|+|.++.. +.+.+..||...+.
T Consensus 219 ----------------d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 273 (679)
T PRK14851 219 ----------------DLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLRPVPCYLQFDPFLQK 273 (679)
T ss_pred ----------------cHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeeeccchhhhcchhhcc
Confidence 00011 2223346778888999999999999999999764 66688899885544
No 34
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=5.5e-35 Score=258.78 Aligned_cols=151 Identities=29% Similarity=0.419 Sum_probs=133.5
Q ss_pred CCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH
Q 020259 22 LVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101 (328)
Q Consensus 22 ~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~ 101 (328)
++++...||.++|++| ++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+|++||+++ ++|+|++|++++++
T Consensus 11 ~~~~~~~~g~~~q~~L-~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~ 88 (212)
T PRK08644 11 EAMLASRHTPKLLEKL-KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKE 88 (212)
T ss_pred HHHHHhhcCHHHHHHH-hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHH
Confidence 3444556999999999 699999999999999999999999999999999999999999999865 78999999999999
Q ss_pred HHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccc-cceEEEeeeccee
Q 020259 102 RVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET-IKPMVDGGTEGFK 179 (328)
Q Consensus 102 ~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~p~i~~~~~G~~ 179 (328)
+++++||+++++.+...+.+.+ .++++++|+||+|+|+.+.+..+++.| ++. ++|+|.+...+..
T Consensus 89 ~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~-------------~~~~~~p~I~~~~~~~~ 155 (212)
T PRK08644 89 NLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETV-------------LEHPGKKLVAASGMAGY 155 (212)
T ss_pred HHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHhCCCCEEEeehhhcc
Confidence 9999999999999998887654 478899999999999999999999999 455 8999998666666
Q ss_pred eeEEEEcC
Q 020259 180 GHARVIIP 187 (328)
Q Consensus 180 G~v~~~~p 187 (328)
|....+.|
T Consensus 156 ~~~~~~~~ 163 (212)
T PRK08644 156 GDSNSIKT 163 (212)
T ss_pred CCceEEEe
Confidence 66554444
No 35
>PRK07877 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=291.97 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=160.6
Q ss_pred CCCccchhhh---hhhh-------cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 020259 4 TAPSRSRDLD---KLLL-------RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-KNLEVIDM 72 (328)
Q Consensus 4 ~~~~~~~~~~---~~~~-------~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~ 72 (328)
.++++|.||. +++. +.++|+||+.+||.++|++| ++++|+|+|+| +|+.++.+|+++|| |+|+|+|+
T Consensus 62 ~~~~~w~~~pw~~~~v~~~~~~~~~~~r~~Rn~~~ig~~~Q~~L-~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 62 AEPGRWVYYPWRRTVVHLLGPREFRAVRLDRNRNKITAEEQERL-GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF 139 (722)
T ss_pred ccCCcEEEecchhheeecCCHHHhhHHHhhchhhhCCHHHHHHH-hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC
Confidence 5789999998 2222 55889999999999999999 69999999997 99999999999996 99999999
Q ss_pred CccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 73 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 73 d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
|.|+.+||+|| +++..|+|++|+++++++|+++||+++|+++...++..+ .++++++|+||+|+|++++|..+|+.|
T Consensus 140 D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a- 217 (722)
T PRK07877 140 DTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAA- 217 (722)
T ss_pred CEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH-
Confidence 99999999998 589999999999999999999999999999999998754 678899999999999999999999999
Q ss_pred HhhhccCCCCccccccceEEEeeecceeeeEE---EEcCCCCCccccccCCCCC
Q 020259 152 SFLEYETDDKPREETIKPMVDGGTEGFKGHAR---VIIPGVTPCFECTIWLFPP 202 (328)
Q Consensus 152 ~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~---~~~p~~~~c~~c~~~~~~~ 202 (328)
.++++|+|.++..+ |.+. +++...++||+|+++..+.
T Consensus 218 ------------~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl~~~~~~ 257 (722)
T PRK07877 218 ------------RARRIPVLMATSDR--GLLDVERFDLEPDRPILHGLLGDIDA 257 (722)
T ss_pred ------------HHcCCCEEEEcCCC--CCcCcceeeeCCCCceeeccCCCCCh
Confidence 67899999887544 6652 3444478999999976554
No 36
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=100.00 E-value=6.4e-33 Score=259.07 Aligned_cols=224 Identities=14% Similarity=0.098 Sum_probs=179.1
Q ss_pred CCCCCCCCC---cc-HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259 20 GNLVGPTFE---PG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95 (328)
Q Consensus 20 ~~~~rq~~l---~G-~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K 95 (328)
+||.||+.+ +| .++|++| ++++|+ +||+|+.++..|+. |||+|+|+|+|.|+.+|++ ++|+++|+|++|
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL-~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K 125 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHL-KKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKD 125 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHH-hhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHH
Confidence 689999998 45 4589999 699999 99999999999999 9999999999999999999 899999999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHH--HHHHHHHHhhhccCCCCccccccceEEEe
Q 020259 96 AEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS--YINAVACSFLEYETDDKPREETIKPMVDG 173 (328)
Q Consensus 96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~~p~i~~ 173 (328)
+++++++|.++||.++++.. .++++++|+||+|+|++.+|. ++|+.| .+.++|+|.+
T Consensus 126 ~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac-------------~~~~~PlV~g 184 (318)
T TIGR03603 126 IRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLS-------------KETKKPNTIA 184 (318)
T ss_pred HHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHH-------------HHHCCCEEEE
Confidence 99999999999999999763 457799999999999999885 499999 5778999999
Q ss_pred eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259 174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253 (328)
Q Consensus 174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (328)
+..|+.|++..++|+.++||+|+++....... ... +++ ++. .
T Consensus 185 av~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~--~~~---~~~----------------------~~~---~-------- 226 (318)
T TIGR03603 185 FIDGPFVFITCTLPPETGCFECLERRLLSRLD--WRL---YGV----------------------FTE---Y-------- 226 (318)
T ss_pred EEccCEEEEEEEeCCCCCcHHHccchhhcccc--ccc---ccc----------------------ccc---c--------
Confidence 99999999998789899999999752211000 000 000 000 0
Q ss_pred HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCC-C-CceEEeecCcccccccc
Q 020259 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-L-SNYLTYAQLSFFASAMQ 325 (328)
Q Consensus 254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~p-i-~N~~~fdg~~~~~~~~~ 325 (328)
.++.. . -....+.+.|+.+++|++++.|++ +++|.+.+ + ...+.||..+..-....
T Consensus 227 --------~~~~~-----~--~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~~~~~ 284 (318)
T TIGR03603 227 --------LVKAE-----N--NVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEIQFQD 284 (318)
T ss_pred --------cCCCC-----C--CCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeEEEEe
Confidence 00000 0 001134588999999999999999 99998775 3 77888999887765544
No 37
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.97 E-value=1.8e-31 Score=220.45 Aligned_cols=132 Identities=39% Similarity=0.626 Sum_probs=121.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||++++++++..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~ 81 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI 81 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEE
Q 020259 120 ED-KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 184 (328)
Q Consensus 120 ~~-~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~ 184 (328)
.+ ...++++++|+||+|+|+.+.+.+++++| ++.++|+|++++.|+.|+++.
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~-------------~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDSLAARLLLNEIC-------------REYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHH-------------HHTT-EEEEEEEETTEEEEEE
T ss_pred ccccccccccCCCEEEEecCCHHHHHHHHHHH-------------HHcCCCEEEEEeecCEEEEEE
Confidence 54 34777899999999999999999999999 688999999999999999864
No 38
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=6.3e-32 Score=245.50 Aligned_cols=142 Identities=27% Similarity=0.350 Sum_probs=130.5
Q ss_pred CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (328)
Q Consensus 19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a 98 (328)
.++|+||.+|||.++|++| ++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||+++..+++|++|+++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL-~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLF-ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEV 88 (268)
T ss_pred HHHHhhHHHHhCHHHHHHh-cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHH
Confidence 3589999999999999999 699999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
++++++++||+++|+.+...+...+ .+++ .++|+||+|.|+...+..++++| ++.++|+|.++
T Consensus 89 ~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c-------------~~~~ip~I~~g 153 (268)
T PRK15116 89 MAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYC-------------RRNKIPLVTTG 153 (268)
T ss_pred HHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEC
Confidence 9999999999999999987766433 4455 47999999999999999999999 67789999764
No 39
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.97 E-value=2.3e-30 Score=255.55 Aligned_cols=155 Identities=25% Similarity=0.393 Sum_probs=135.2
Q ss_pred CCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---CChHHHHHHHHH
Q 020259 27 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRV 103 (328)
Q Consensus 27 ~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---G~~Ka~a~~~~l 103 (328)
.+++... ++| ++++|+|+|+||+||++|++|+++|||+|||+|+|.|+.+|++||++|+.+|+ |++||++++++|
T Consensus 327 llP~l~~-ekL-~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~L 404 (664)
T TIGR01381 327 LHPDLQL-ERY-SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKAL 404 (664)
T ss_pred cCChhhH-HHH-hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHH
Confidence 3444443 899 69999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhhCCCcEEEEEeccc-------CC-----------cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcccc
Q 020259 104 MERVSGVNIVPHFCRI-------ED-----------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 165 (328)
Q Consensus 104 ~~lnp~v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~ 165 (328)
+++||.++++.+...+ .+ .-.++++++|+|++|+|+.+.|..++.+| ..
T Consensus 405 k~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c-------------~~ 471 (664)
T TIGR01381 405 KRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLC-------------SR 471 (664)
T ss_pred HHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHH-------------HH
Confidence 9999999999988774 22 12467899999999999999999999999 57
Q ss_pred ccceEEEeeecceeeeEEEEc------------------CCCCCcccccc
Q 020259 166 TIKPMVDGGTEGFKGHARVII------------------PGVTPCFECTI 197 (328)
Q Consensus 166 ~~~p~i~~~~~G~~G~v~~~~------------------p~~~~c~~c~~ 197 (328)
+++|+|.+. .|+.|++.... +...+||+|.-
T Consensus 472 ~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~D 520 (664)
T TIGR01381 472 HKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCND 520 (664)
T ss_pred hCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccCC
Confidence 789999985 79999987641 12578999983
No 40
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.97 E-value=5.1e-31 Score=232.31 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259 19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98 (328)
Q Consensus 19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a 98 (328)
.++||||+++||.++|+|| ++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++|||++++ ++|++||++
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL-~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAea 83 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQL-MHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGAR 83 (287)
T ss_pred HHHHhHHHHHhCHHHHHHH-hhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHH
Confidence 4689999999999999999 69999999999999999999999999999999999999999999999987 689999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHH
Q 020259 99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEA 142 (328)
Q Consensus 99 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~ 142 (328)
++++|+++||.++|+.+...++. .++|++||.+..+.+.
T Consensus 84 Aa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~ 122 (287)
T PTZ00245 84 ALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEED 122 (287)
T ss_pred HHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHH
Confidence 99999999999999998877754 3589999988776554
No 41
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=4.6e-30 Score=220.77 Aligned_cols=142 Identities=28% Similarity=0.418 Sum_probs=126.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||++ ..+|+|++|+++++++|+++||++++++++..+..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999985 57899999999999999999999999999998876
Q ss_pred cc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCC--CCccccc
Q 020259 122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV--TPCFECT 196 (328)
Q Consensus 122 ~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~--~~c~~c~ 196 (328)
.+ .++++++|+||+|+|+.+.|..+++.|+ +.+++|+|.++..|.+|++.+..|+. .+|++|.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~------------~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLL------------GNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHH------------HHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 44 5789999999999999999998888874 34589999998888888887766554 4688876
No 42
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=8.8e-30 Score=212.35 Aligned_cols=132 Identities=42% Similarity=0.665 Sum_probs=124.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||+|++++|+|++|+++++++++++||+++++.++..+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred cc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEc
Q 020259 122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186 (328)
Q Consensus 122 ~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~ 186 (328)
.. .++++++|+||+|.|+.+.+..++++| ++.++|+|.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~-------------~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRAC-------------KELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEcCCCcEEEEEEEE
Confidence 33 678899999999999999999999999 67899999999999999998765
No 43
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=5.3e-30 Score=229.04 Aligned_cols=136 Identities=32% Similarity=0.387 Sum_probs=124.7
Q ss_pred ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259 29 PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (328)
Q Consensus 29 ~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp 108 (328)
+|.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++.++|+|++|+++++++|+++||
T Consensus 1 ~G~e~~~~L-~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP 79 (231)
T cd00755 1 YGEEGLEKL-RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP 79 (231)
T ss_pred CCHHHHHHH-hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence 699999999 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259 109 GVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (328)
Q Consensus 109 ~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~ 178 (328)
+++|+.+...+...+ .+++ .++|+||+|.|+...+..++++| ++.++|+|.++..|-
T Consensus 80 ~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c-------------~~~~ip~I~s~g~g~ 138 (231)
T cd00755 80 ECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYC-------------RKRKIPVISSMGAGG 138 (231)
T ss_pred CcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHH-------------HHhCCCEEEEeCCcC
Confidence 999999998887533 4444 47999999999999999999999 677899998765554
No 44
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.96 E-value=5.9e-29 Score=218.24 Aligned_cols=122 Identities=29% Similarity=0.462 Sum_probs=112.6
Q ss_pred CccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC
Q 020259 28 EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV 107 (328)
Q Consensus 28 l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln 107 (328)
-.|.++|++| ++++|+|+|+||+|+++|++|+++|+++++|+|.|.|+++|++||+ |..+++|++|+++++++|+++|
T Consensus 10 ~~~~~~q~~L-~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 10 RHTPKIVQKL-EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN 87 (200)
T ss_pred hcCHHHHHHH-hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence 4689999999 6999999999999999999999999999999999999999999996 5778999999999999999999
Q ss_pred CCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 108 SGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 108 p~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
|.++++++...++..+ .++++++|+||+|+|+.+++..+++.|.
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~ 132 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVL 132 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 9999999998887654 5678999999999999999988777664
No 45
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.96 E-value=6.2e-29 Score=222.79 Aligned_cols=182 Identities=27% Similarity=0.320 Sum_probs=149.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGF-----K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gv-----g-----~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp 108 (328)
+..+|+|||+||+||+++++|+++|+ | +|+|+|+|.|+++|++|| +|.++|+|++||+++++++++.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc-
Confidence 68999999999999999999999973 4 999999999999999999 56789999999999999999988
Q ss_pred CcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce----------
Q 020259 109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF---------- 178 (328)
Q Consensus 109 ~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~---------- 178 (328)
++++++++..+.. .+++.++|+||+|+|+.++|..+++.|... ....+|++++|+.+.
T Consensus 88 ~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~----------~~~~~~~ld~Gn~~~~gqv~~g~i~ 155 (244)
T TIGR03736 88 GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGG----------YSGYAYWLDLGNRADDGQVILGQVP 155 (244)
T ss_pred CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHh----------cccccceecccCCCCCCcEEEEecc
Confidence 8999999988876 345678999999999999999999999531 122479999988443
Q ss_pred ---eeeEEEEcCCCCCccccccCCCC-CCCCCCcccccCCCCChhhHH-----HHHHHHhhhhhh
Q 020259 179 ---KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLAETPRTAAHCI-----EYAHLIKWDEVH 234 (328)
Q Consensus 179 ---~G~v~~~~p~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~ 234 (328)
.|...+.+|..+.||.|+++..+ ++++.|+|++.+....+...+ ..+..+.|+-..
T Consensus 156 ~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~ 220 (244)
T TIGR03736 156 SRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFR 220 (244)
T ss_pred cccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 45666778999999999887544 567889999988776655443 344556666554
No 46
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=3.3e-28 Score=222.08 Aligned_cols=142 Identities=30% Similarity=0.442 Sum_probs=124.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCC--CCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~d--iG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||+||+.+| +|++||++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999987654
Q ss_pred C----------------C--cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259 120 E----------------D--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH 181 (328)
Q Consensus 120 ~----------------~--~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~ 181 (328)
. + .-.++++++|+|++|+|+.+.|..++.+| ..+++|+|. ...|+.|+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~-------------~~~~k~~I~-aalGfdg~ 146 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLS-------------AAKNKLVIN-AALGFDSY 146 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHH-------------HHhCCcEEE-EEeccceE
Confidence 1 0 12567899999999999999999999999 577899998 46688888
Q ss_pred EEEEcC-------------------CCCCcccccc
Q 020259 182 ARVIIP-------------------GVTPCFECTI 197 (328)
Q Consensus 182 v~~~~p-------------------~~~~c~~c~~ 197 (328)
+..... ..-+||.|.=
T Consensus 147 lvmrhg~~~~~~~~~~~~~~~~~~~~~lgCYfCnD 181 (307)
T cd01486 147 LVMRHGAGPQSQSGSGDSSSDSIPGSRLGCYFCND 181 (307)
T ss_pred EEEEeCCCcccccccccccccccCCCCcceeeeCC
Confidence 765432 1468999974
No 47
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=1.4e-27 Score=208.69 Aligned_cols=143 Identities=27% Similarity=0.383 Sum_probs=131.3
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE 97 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~ 97 (328)
..++|.|.-+++|.++-+|| ++++|+|+|+||+||.++..|+++|+|+|+|+|.|.|+.+|+|||.-....++|++|++
T Consensus 9 ~~~rf~~~~~l~G~~~lekl-~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~ 87 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKL-KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVE 87 (263)
T ss_pred HHHHhhhHHHHcChhHHHHH-hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHH
Confidence 45678999999999999999 69999999999999999999999999999999999999999999987778899999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
+++++++.+||+++|.+....+++.+ ++++ .+||+||+|.|+..+...|-.+| +++++|+|..+
T Consensus 88 vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c-------------~~~ki~vIss~ 153 (263)
T COG1179 88 VMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYC-------------RRNKIPVISSM 153 (263)
T ss_pred HHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHH-------------HHcCCCEEeec
Confidence 99999999999999999999988765 4444 46999999999999999999999 67789998654
No 48
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.93 E-value=7.4e-26 Score=200.35 Aligned_cols=231 Identities=25% Similarity=0.391 Sum_probs=178.6
Q ss_pred cCCCCCCCCCC--cc-HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCCh
Q 020259 18 RAGNLVGPTFE--PG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP 94 (328)
Q Consensus 18 ~~~~~~rq~~l--~G-~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~ 94 (328)
.+.+|+|-..| .| .+.-.|+| ...|.|||.||+||-+|..|.++|+|++.|+|.|+|+.+|++|-| |.++..|.+
T Consensus 58 DSNPYSRLMALqRMgIV~dYErIR-~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGls 135 (422)
T KOG2336|consen 58 DSNPYSRLMALQRMGIVDDYERIR-EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLS 135 (422)
T ss_pred cCChHHHHHHHHHhcchhhHHHHh-hheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccch
Confidence 45667765332 23 45567896 999999999999999999999999999999999999999999996 699999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCcc--hhh-----------hccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCC
Q 020259 95 KAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISF-----------YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDK 161 (328)
Q Consensus 95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~--~~~-----------~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~ 161 (328)
|++++...|..+||+|.++.++-.+.... +.| -+..|+|+.|+||.++|..+|..|.
T Consensus 136 Kv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN---------- 205 (422)
T KOG2336|consen 136 KVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN---------- 205 (422)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH----------
Confidence 99999999999999999999988875421 111 1348999999999999999999993
Q ss_pred ccccccceEEEeeec--ceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCC
Q 020259 162 PREETIKPMVDGGTE--GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSF 239 (328)
Q Consensus 162 ~~~~~~~p~i~~~~~--G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (328)
+.+--+...|+. ...||++++.|+.|+||.|..+..-
T Consensus 206 ---E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVV-------------------------------------- 244 (422)
T KOG2336|consen 206 ---ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVV-------------------------------------- 244 (422)
T ss_pred ---HhhhHHHHccCccccccceeEEecCCccceecccCceee--------------------------------------
Confidence 333334444443 4679999999999999999742100
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcc
Q 020259 240 DPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSF 319 (328)
Q Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~ 319 (328)
.-||+..+.. .+ .-+...+++|.+|++|+++|..+|+|-..++ +..|+-|+.++.
T Consensus 245 --------------------As~IDErTLK-Re---GVCAASLPTTMgvvAG~LVqN~LK~LLNFGe-VS~YlGYNal~D 299 (422)
T KOG2336|consen 245 --------------------ASGIDERTLK-RE---GVCAASLPTTMGVVAGFLVQNSLKFLLNFGE-VSPYLGYNALSD 299 (422)
T ss_pred --------------------ecCcchhhhh-hc---ceeeecCcchHHHHHHHHHHHHHHHHhhccc-cchhhcchhHHh
Confidence 0011100000 01 1245679999999999999999999998754 457888999988
Q ss_pred ccccccc
Q 020259 320 FASAMQF 326 (328)
Q Consensus 320 ~~~~~~~ 326 (328)
+.+.|.+
T Consensus 300 FFP~msm 306 (422)
T KOG2336|consen 300 FFPTMSM 306 (422)
T ss_pred hCccccC
Confidence 8887764
No 49
>PRK06153 hypothetical protein; Provisional
Probab=99.93 E-value=3e-25 Score=208.58 Aligned_cols=145 Identities=25% Similarity=0.293 Sum_probs=126.5
Q ss_pred CccchhhhhhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcccc-
Q 020259 6 PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF- 84 (328)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~- 84 (328)
.|-+.|+|.+-.|. =+.+.|++| ++++|+||||||+||.++..|+++||++|+|+|+|.|+++|++||+
T Consensus 152 ~svf~y~dt~s~R~---------~i~~~q~kL-~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~g 221 (393)
T PRK06153 152 DSVFNYPDTASSRA---------GIGALSAKL-EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPG 221 (393)
T ss_pred CCceehhhhhcccc---------ChHHHHHHH-hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccc
Confidence 45566666665542 134679999 6999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCC--hHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCc
Q 020259 85 LFRMEDVGK--PKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP 162 (328)
Q Consensus 85 l~~~~diG~--~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~ 162 (328)
+++.+|+|+ +|+++++++++++||. |.++...++..+.+.++++|+||+|+|+.+.|.++++.|
T Consensus 222 af~~~DvGk~~~KVevaa~rl~~in~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a------------ 287 (393)
T PRK06153 222 AASIEELREAPKKVDYFKSRYSNMRRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL------------ 287 (393)
T ss_pred cCCHhHcCCcchHHHHHHHHHHHhCCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH------------
Confidence 568999999 9999999999999984 567777886666667899999999999999999999999
Q ss_pred cccccceEEEeee
Q 020259 163 REETIKPMVDGGT 175 (328)
Q Consensus 163 ~~~~~~p~i~~~~ 175 (328)
.+.++|+|++|.
T Consensus 288 -~~~gIP~Id~G~ 299 (393)
T PRK06153 288 -EALGIPFIDVGM 299 (393)
T ss_pred -HHcCCCEEEeee
Confidence 577999999875
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.1e-23 Score=185.51 Aligned_cols=251 Identities=19% Similarity=0.203 Sum_probs=174.3
Q ss_pred CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259 20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA 99 (328)
Q Consensus 20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~ 99 (328)
++..|+...+|.++|+|| +++=|+||||||+||.++-.|+++|+++|.|+|+|.|+.+.|+||......|+|.+|+.++
T Consensus 55 eqLarN~aFfGee~m~kl-~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~cl 133 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKL-TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCL 133 (430)
T ss_pred HHHHhHHhhhhhhHHHHh-cCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHH
Confidence 445677778999999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecccCCcc-hh-hhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 100 AKRVMERVSGVNIVPHFCRIEDKD-IS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 100 ~~~l~~lnp~v~v~~~~~~~~~~~-~~-~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
++.++++.|.++|++...-++..+ ++ .+.+.|.|++|.||.++..-+-++| .++++++|.+.-.+
T Consensus 134 kkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~-------------~~~~l~Viss~Gaa 200 (430)
T KOG2018|consen 134 KKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYC-------------YNHGLKVISSTGAA 200 (430)
T ss_pred HHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHH-------------HHcCCceEeccCcc
Confidence 999999999999999888776654 33 4467999999999999999898999 57789988643222
Q ss_pred eee-eEEEEcCCCCCccccccCCCCCCCCCCcc-cccCCCCChhhHHHHHHHHhhhhhhcC----CCCCCCChhHHHHHH
Q 020259 178 FKG-HARVIIPGVTPCFECTIWLFPPQVKFPLC-TLAETPRTAAHCIEYAHLIKWDEVHSG----KSFDPDDPEHMQWVY 251 (328)
Q Consensus 178 ~~G-~v~~~~p~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ 251 (328)
... ..++-+.+ ....+.-|+. +.+ .+...+.|.-.+-+.|+.+++. .-++..++++-
T Consensus 201 aksDPTrv~v~D-----------is~t~~DPlsR~vR--rrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~e---- 263 (430)
T KOG2018|consen 201 AKSDPTRVNVAD-----------ISETEEDPLSRSVR--RRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGE---- 263 (430)
T ss_pred ccCCCceeehhh-----------ccccccCcHHHHHH--HHHHHhccccCCceEEecCCCCccccccCCCCccccc----
Confidence 111 11111111 0111111111 000 0111233443444455544421 11121222110
Q ss_pred HHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcC-CCCCCce
Q 020259 252 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC-SKTLSNY 311 (328)
Q Consensus 252 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~-~~pi~N~ 311 (328)
.-+......++++.-.+.|.+.|+++|+|-.+|.-++.-|++. -+|+.|.
T Consensus 264 ----------rg~~delsav~dfrvRilPvlGtmP~iFGltiat~vlt~ia~~pmepi~~~ 314 (430)
T KOG2018|consen 264 ----------RGNVDELSAVPDFRVRILPVLGTMPGIFGLTIATYVLTQIAQYPMEPIENK 314 (430)
T ss_pred ----------cCChhhhhhccchhhhhcccccCcchHHHHHHHHHHHHHHhcCCCCccccc
Confidence 0000111234555556789999999999999999999998863 3466653
No 51
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.75 E-value=5.4e-18 Score=166.66 Aligned_cols=189 Identities=18% Similarity=0.204 Sum_probs=145.2
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
++-| +++|+|+|.|++|+.++.+|+.+|+++|..+|.|.+ .+|++| ||+. ++.+++ .||+++++.
T Consensus 125 ~~qR-~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~v~~ 189 (637)
T TIGR03693 125 ELSR-NAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDALLVQE 189 (637)
T ss_pred hhhh-cccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCCceEe
Confidence 3444 999999999999999999999999999999999999 999999 6666 554444 899999999
Q ss_pred EecccCCcchhhhccCCEEEecCC--CHHHHHHHHHHHHHhhhccCCCCcccccc---ceEEEeeecceeeeEEEEcCCC
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD--SIEARSYINAVACSFLEYETDDKPREETI---KPMVDGGTEGFKGHARVIIPGV 189 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~p~i~~~~~G~~G~v~~~~p~~ 189 (328)
.+....+.-.+.++++|+||..+| +.....++|+.| .+.+ +|++.++..++.|.++. |+.
T Consensus 190 i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~ac-------------vkegk~~IPai~~G~~~liGPlft--Pgk 254 (637)
T TIGR03693 190 IDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFC-------------KEEGKGFIPAICLKQVGLAGPVFQ--QHG 254 (637)
T ss_pred ccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHH-------------HHcCCCeEEEEEcccceeecceEC--CCC
Confidence 877444445788899999999988 456778999999 4556 77778888888888875 999
Q ss_pred CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchh
Q 020259 190 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYS 269 (328)
Q Consensus 190 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~ 269 (328)
++|++|...... . .+ ++..
T Consensus 255 TGCWeCa~~RL~------------------------------e---------------------------~~-L~~~--- 273 (637)
T TIGR03693 255 DECFEAAWHRLH------------------------------E---------------------------SA-LHEE--- 273 (637)
T ss_pred CcHHHHHHHHHH------------------------------H---------------------------Hh-cCCC---
Confidence 999999641000 0 00 0000
Q ss_pred hhHhhhhccCccccc-hhHHHHHHHHHHHHHHHhcC--CCCCCceEEeecCcccc
Q 020259 270 LTQGVVKNIIPAIAS-TNAIISAACALETLKIASGC--SKTLSNYLTYAQLSFFA 321 (328)
Q Consensus 270 ~~~~~~~~~~~~l~p-~~aivGG~~aqEviK~it~~--~~pi~N~~~fdg~~~~~ 321 (328)
.....++| +.|+++++++.|++|.+++. ...-..++.||-.+..+
T Consensus 274 -------~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~ 321 (637)
T TIGR03693 274 -------NSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG 321 (637)
T ss_pred -------CcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc
Confidence 00012344 58999999999999999984 34556788999888765
No 52
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.58 E-value=7.1e-15 Score=140.24 Aligned_cols=114 Identities=31% Similarity=0.482 Sum_probs=98.8
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---CChHHHHHHHHHHhhCCCcE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERVSGVN 111 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---G~~Ka~a~~~~l~~lnp~v~ 111 (328)
+++ ++.++|+.|+|.+||.||++|.--||.+||++|+.+|.-+|-.||.+|+-+|- |++||++++++|++++|.++
T Consensus 336 d~i-s~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~ 414 (669)
T KOG2337|consen 336 DII-SQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSME 414 (669)
T ss_pred hhh-hcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcccc
Confidence 678 79999999999999999999999999999999999999999999999998886 59999999999999999998
Q ss_pred EEEEecccCC-------c-----------chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 112 IVPHFCRIED-------K-----------DISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 112 v~~~~~~~~~-------~-----------~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+.+.-.+.- . -+.+++..|+|+..+|+.+.| |+-...
T Consensus 415 atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR-WLPtll 470 (669)
T KOG2337|consen 415 ATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR-WLPTLL 470 (669)
T ss_pred ccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh-hhHHHH
Confidence 7776655421 1 145678999999999997664 666544
No 53
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.11 E-value=2.1e-10 Score=82.71 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=54.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcC
Q 020259 238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304 (328)
Q Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~ 304 (328)
+|+++++.|+++++..++++++.|||++.+...++++++...|++.|+++|++|++..|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 3678899999999999999999999998777889999999999999999999999999999999863
No 54
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.55 E-value=5.7e-07 Score=74.61 Aligned_cols=127 Identities=20% Similarity=0.268 Sum_probs=98.2
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLA---LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI 112 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~---l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v 112 (328)
|.+....|.++|||-+|--++-+|. +.|..+|.++|...|++.|+---- --..+|.+|++-++ ++.+..+.-.|
T Consensus 14 kk~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V 90 (217)
T COG4015 14 KKKPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRV 90 (217)
T ss_pred ccCCCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCcee
Confidence 3334678999999999999999998 678899999999999999986332 23568999998654 56666778899
Q ss_pred EEEecccCCcchhhhccCCEEEec---CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259 113 VPHFCRIEDKDISFYNDFNIIVLG---LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH 181 (328)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~dvVi~~---~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~ 181 (328)
++.++.++..+...+.+ |+|+.| .|....-..+..+| ++.++..| ++.|.+|+
T Consensus 91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya-------------~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYA-------------KERGIKTI--STNGVFGI 146 (217)
T ss_pred ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHH-------------HHcCceEe--ecCceeec
Confidence 99999999888888877 887555 55666667777788 56676554 45565554
No 55
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=98.26 E-value=1e-06 Score=66.41 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCC-CCceEEeecCccccccccc
Q 020259 280 PAIASTNAIISAACALETLKIASGCSKT-LSNYLTYAQLSFFASAMQF 326 (328)
Q Consensus 280 ~~l~p~~aivGG~~aqEviK~it~~~~p-i~N~~~fdg~~~~~~~~~~ 326 (328)
+.++|+.+++|+++|+|+||+|+|.+.+ ...+++||+.+.....+++
T Consensus 24 GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~ 71 (84)
T PF05237_consen 24 GVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRI 71 (84)
T ss_dssp -B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEec
Confidence 4589999999999999999999997665 5678899999987766654
No 56
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.03 E-value=2.9e-05 Score=63.88 Aligned_cols=78 Identities=31% Similarity=0.385 Sum_probs=57.7
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
.+ ++++|+|+|+||.|..+++.|...|+++|++++. . ..|++.+++.+ +...+...
T Consensus 9 ~l-~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t---------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 9 DL-KGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------T---------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp TG-TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------S---------HHHHHHHHHHH----TGCSEEEE
T ss_pred Cc-CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------C---------HHHHHHHHHHc----Ccccccee
Confidence 47 6999999999999999999999999999999862 2 25787777777 33333333
Q ss_pred ecccCCcchhhhccCCEEEecCCCH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
+- .+ ..+.+.++|+||.|+...
T Consensus 65 ~~--~~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 65 PL--ED-LEEALQEADIVINATPSG 86 (135)
T ss_dssp EG--GG-HCHHHHTESEEEE-SSTT
T ss_pred eH--HH-HHHHHhhCCeEEEecCCC
Confidence 22 11 235678999999998754
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.02 E-value=3.1e-05 Score=71.81 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=60.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+.++.+.+....
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~-- 184 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS-- 184 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc--
Confidence 46789999999999999999999999999999854 268999999998877765543321
Q ss_pred cCCcchhhhccCCEEEecCC
Q 020259 119 IEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d 138 (328)
...+.+.++|+||+|+.
T Consensus 185 ---~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 ---DLAAALAAADGLVHATP 201 (284)
T ss_pred ---chHhhhCCCCEEEECCc
Confidence 11334578999999965
No 58
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.92 E-value=4.8e-05 Score=66.47 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=70.1
Q ss_pred cHHHHHHHHcCCcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259 30 GTELRDDLQEYARILVVGAGGLGCE-LLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (328)
Q Consensus 30 G~~~q~~Lr~~~~VliiG~gglG~e-vaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp 108 (328)
....|++| ++++|.|+|.|+.|++ ++..|..+|++.+. + .
T Consensus 96 ~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~-------------------~- 136 (193)
T TIGR03882 96 PAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S-------------------E- 136 (193)
T ss_pred HHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C-------------------C-
Confidence 57889999 5999999999999998 99999999998665 0 0
Q ss_pred CcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEE-EEcC
Q 020259 109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHAR-VIIP 187 (328)
Q Consensus 109 ~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~-~~~p 187 (328)
...++|++..-.......+|+.+ ...+.|++.+...|..+.+- ++.|
T Consensus 137 -------------------a~l~vVl~~Dyl~p~L~~~n~~~-------------l~~~~~~l~v~~~~~~~~~gp~~~p 184 (193)
T TIGR03882 137 -------------------ADLTVVLTDDYLDPELAAINQRA-------------LAAGRPWLLVKPGGVQPWIGPLFKP 184 (193)
T ss_pred -------------------CCEEEEEeCCCCChHHHHHHHHH-------------HHcCCceEEEEeCCceEEECCeecC
Confidence 11233433322233445677777 56788888887777666654 4679
Q ss_pred CCCCccccc
Q 020259 188 GVTPCFECT 196 (328)
Q Consensus 188 ~~~~c~~c~ 196 (328)
+.|+|++|+
T Consensus 185 ~~~~c~~c~ 193 (193)
T TIGR03882 185 GKTGCWHCL 193 (193)
T ss_pred CCCcccccC
Confidence 999999995
No 59
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.92 E-value=6.9e-05 Score=71.89 Aligned_cols=85 Identities=22% Similarity=0.399 Sum_probs=59.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~ 120 (328)
.+|+|+|+|++|+-+|.+|+..|.++|++.|... ..++++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5799999999999999999999999999998221 123333332211 5555555554
Q ss_pred Cc--chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 121 DK--DISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 121 ~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
+. -.+.++++|+||+|........ +-+.|
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~~-i~ka~ 88 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDLT-ILKAC 88 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhHH-HHHHH
Confidence 43 2578899999999988766654 33455
No 60
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=97.81 E-value=9.1e-06 Score=53.56 Aligned_cols=42 Identities=40% Similarity=0.851 Sum_probs=32.0
Q ss_pred CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhh
Q 020259 189 VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV 233 (328)
Q Consensus 189 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (328)
.|.||.|..+.. .+.+|+|+++++|+.++|||+|+. ..|+..
T Consensus 2 ~Tecy~c~~~~~--~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~ 43 (45)
T PF10585_consen 2 VTECYECSPDPP--EKSYPVCTIRNFPRTPEHCIEWAK-DLFEEL 43 (45)
T ss_dssp TS--TTCSGGGS--SSSEEHHHHHTS-SSHHHHHHHHH-HHHHHH
T ss_pred ccccccCCCCCC--CCCCCcchhhcCCCCchHHHHHHH-HHHHHH
Confidence 588999987643 345999999999999999999998 666654
No 61
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.69 E-value=0.00045 Score=60.82 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=58.9
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++.+|+|||.|.+|...++.|...| .++++++++. . +.+.++.+.-.+....
T Consensus 8 l-~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 8 L-SNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------------------HHHHHHHhCCCEEEEe
Confidence 6 6899999999999999999999999 5899996431 0 1111111111233332
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+ ....+.++|+||.|+++.+.-..+...|
T Consensus 61 ~~~---~~~~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 61 KEF---EPSDIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred cCC---ChhhcCCceEEEEcCCCHHHHHHHHHHH
Confidence 222 3455788999999999988888887777
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.57 E-value=0.00088 Score=59.12 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=66.7
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++.+|+|||.|.+|..-++.|...|. ++|+++++.- ..+ +.+.+.. +++...
T Consensus 7 l-~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l-~~l~~~~---~i~~~~ 59 (205)
T TIGR01470 7 L-EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SEL-TLLAEQG---GITWLA 59 (205)
T ss_pred c-CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHH-HHHHHcC---CEEEEe
Confidence 5 58899999999999999999999997 8999986421 011 1122211 344444
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~ 173 (328)
.... .+.+.++++||.|+++.+....+-..| ++.++++-.+
T Consensus 60 ~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a-------------~~~~ilvn~~ 100 (205)
T TIGR01470 60 RCFD---ADILEGAFLVIAATDDEELNRRVAHAA-------------RARGVPVNVV 100 (205)
T ss_pred CCCC---HHHhCCcEEEEECCCCHHHHHHHHHHH-------------HHcCCEEEEC
Confidence 4432 455789999999999987777788888 5667776443
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.44 E-value=0.00036 Score=54.58 Aligned_cols=86 Identities=20% Similarity=0.121 Sum_probs=60.5
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++.+|+|||.|.+|..-++.|..+|. +++++.++. +. .+ ..++ ...
T Consensus 5 l-~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~-~~-------------------------~~---~~i~--~~~ 51 (103)
T PF13241_consen 5 L-KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI-EF-------------------------SE---GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE-HH-------------------------HH---TSCE--EEE
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch-hh-------------------------hh---hHHH--HHh
Confidence 6 68999999999999999999999995 999998765 00 00 1222 222
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEE
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVD 172 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~ 172 (328)
..+ .+.++++++|+.|+++.+....+.+.| ++.++|+-.
T Consensus 52 ~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a-------------~~~~i~vn~ 90 (103)
T PF13241_consen 52 REF----EEDLDGADLVFAATDDPELNEAIYADA-------------RARGILVNV 90 (103)
T ss_dssp SS-----GGGCTTESEEEE-SS-HHHHHHHHHHH-------------HHTTSEEEE
T ss_pred hhH----HHHHhhheEEEecCCCHHHHHHHHHHH-------------hhCCEEEEE
Confidence 222 244788999999999988888888888 566776644
No 64
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.35 E-value=0.0015 Score=55.15 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++.+|+|||.|.+|...++.|...|. ++++++++..+ .+.++ +. +....
T Consensus 11 l-~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~~~ 60 (157)
T PRK06719 11 L-HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITWKQ 60 (157)
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEEEe
Confidence 5 68999999999999999999999997 89999654211 11111 12 22222
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+ ..+.+.++|+||.++++.+.-..+...|
T Consensus 61 ~~~---~~~dl~~a~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 61 KTF---SNDDIKDAHLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred ccc---ChhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 222 3445688999999999988777777777
No 65
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.32 E-value=0.0013 Score=61.07 Aligned_cols=82 Identities=20% Similarity=0.243 Sum_probs=56.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
++.+++|+|+||+|..++..|+..|+.+|+|++.+. -...|++.+++.+.+..+.+.+... +
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~~~~--d 186 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIVNVY--D 186 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCceeEEe--c
Confidence 467899999999999999999999999999987321 0114677777777665555444322 2
Q ss_pred cCCc--chhhhccCCEEEecCC
Q 020259 119 IEDK--DISFYNDFNIIVLGLD 138 (328)
Q Consensus 119 ~~~~--~~~~~~~~dvVi~~~d 138 (328)
+.+. -.+.+..+|+||+|+.
T Consensus 187 ~~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 187 LNDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred hhhhhHHHhhhccCCEEEEeCC
Confidence 2211 1334567899998865
No 66
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.30 E-value=0.0012 Score=61.16 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=55.4
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+.++|+|+|+||.|..++-.|+..|+.+|+|+|.+. .|++.+++.+.+..+...+... .
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~--~ 184 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGV--D 184 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEec--C
Confidence 467899999999999999999999999999997432 4888888887654443222221 1
Q ss_pred cCCcchhhhccCCEEEecCC
Q 020259 119 IEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d 138 (328)
... ..+....+|+||+|+.
T Consensus 185 ~~~-~~~~~~~~divINaTp 203 (283)
T PRK14027 185 ARG-IEDVIAAADGVVNATP 203 (283)
T ss_pred HhH-HHHHHhhcCEEEEcCC
Confidence 110 1223467899999975
No 67
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.18 E-value=0.0014 Score=60.66 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+..+|+|+|+||.|..++..|...|+++|+|++.+ ..|++.+++.+.... . +.... .
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~-~ 180 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLE-G 180 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceecc-c
Confidence 46789999999999999999999999999998632 247888887765431 1 11110 0
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
. +.....+.++|+||+|+..
T Consensus 181 ~-~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 181 D-SGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred h-hhhhhcccCCCEEEECCCC
Confidence 0 1112344679999999763
No 68
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.15 E-value=0.0052 Score=54.82 Aligned_cols=83 Identities=14% Similarity=0.164 Sum_probs=60.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
++.+|+|||.|.+|..=++.|..+|. +||++-++.- +.. .+ +.. ++. ++.....
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~------------------~el---~~-l~~-~~~--i~~~~r~ 77 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS------------------KEF---LD-LKK-YGN--LKLIKGN 77 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC------------------HHH---HH-HHh-CCC--EEEEeCC
Confidence 57899999999999999999999996 8999865421 000 11 111 233 4444443
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
. ..+.+.++++||.|+++.+.-..+...|
T Consensus 78 ~---~~~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 78 Y---DKEFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred C---ChHHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 3 3456789999999999999888888888
No 69
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.09 E-value=0.0011 Score=64.13 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=58.2
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++++|+|||+|-+|.-+|++|...|+..|+|+ ||++ -||+.+++.+. ..+...
T Consensus 176 L-~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l- 229 (414)
T COG0373 176 L-KDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVAL- 229 (414)
T ss_pred c-ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecH-
Confidence 6 68899999999999999999999999999996 3442 57888887776 222111
Q ss_pred cccCCcchhhhccCCEEEecCCCHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
+.-.+++..+|+||.|+..+.
T Consensus 230 ----~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 ----EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ----HHHHHhhhhCCEEEEecCCCc
Confidence 123567889999999988654
No 70
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0026 Score=58.79 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=55.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
..+|+|+|+||.+..++..|...|+.+|+|++.+ ..|++.+++.+.+..+.+.....
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~---- 182 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAAL---- 182 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccc----
Confidence 5789999999999999999999999999998522 26888899988887652222111
Q ss_pred CCcchhhhccCCEEEecCCC
Q 020259 120 EDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~ 139 (328)
. +.+....+|+||+|+.-
T Consensus 183 ~--~~~~~~~~dliINaTp~ 200 (283)
T COG0169 183 A--DLEGLEEADLLINATPV 200 (283)
T ss_pred c--ccccccccCEEEECCCC
Confidence 1 11111279999999763
No 71
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.06 E-value=0.0025 Score=61.61 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=53.6
Q ss_pred EEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 43 ILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 43 VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
|+|+|+|.+|..+++.|+..+-. ++++.|.+. .|++.+++.+ ...++....-++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 78999999999999999999854 899988433 3444444443 23355555555554
Q ss_pred cc--hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 122 KD--ISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 122 ~~--~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.. .++++++|+||+|+... ....+-+.|
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~ 87 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARAC 87 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHH
Confidence 32 66789999999998765 333455566
No 72
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.02 E-value=0.0028 Score=58.50 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=54.1
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+ .+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ .
T Consensus 121 ~-~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 121 L-KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred C-CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 5 47889999999999999999999999999998742 2467777776654321 222 0
Q ss_pred cccCCcchhhhccCCEEEecCCC
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
. ...+.+.++|+||+|+..
T Consensus 177 --~--~~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 177 --L--ELQEELADFDLIINATSA 195 (278)
T ss_pred --c--cchhccccCCEEEECCcC
Confidence 1 113456789999999763
No 73
>PRK04148 hypothetical protein; Provisional
Probab=96.99 E-value=0.0094 Score=48.82 Aligned_cols=92 Identities=17% Similarity=0.310 Sum_probs=69.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+.+|+.||+| .|.++|+.|+..|. .++.+|-+. ..+ +.+++. .+.+...++
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV----~~a~~~----~~~~v~dDl 67 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAV----EKAKKL----GLNAFVDDL 67 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHH----HHHHHh----CCeEEECcC
Confidence 4679999999 99999999999997 899998332 122 222322 245566777
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~ 173 (328)
.+.+.++.+++|+|-..-...+....+-+++ ++.+.+++..
T Consensus 68 f~p~~~~y~~a~liysirpp~el~~~~~~la-------------~~~~~~~~i~ 108 (134)
T PRK04148 68 FNPNLEIYKNAKLIYSIRPPRDLQPFILELA-------------KKINVPLIIK 108 (134)
T ss_pred CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHH-------------HHcCCCEEEE
Confidence 7778899999999999988888888888888 5667776653
No 74
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.96 E-value=0.0035 Score=58.24 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=54.8
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
++++++|+|+||.+..++-.|+..|+++|+|++.+. -...|++.+++.+....+ ..+....
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~-- 183 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD-- 183 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec--
Confidence 467899999999999999999999999999987321 023588888887765332 2222221
Q ss_pred cCCc--chhhhccCCEEEecCC
Q 020259 119 IEDK--DISFYNDFNIIVLGLD 138 (328)
Q Consensus 119 ~~~~--~~~~~~~~dvVi~~~d 138 (328)
+.+. -.+.+.++|+||+|+.
T Consensus 184 ~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 184 LADQQAFAEALASADILTNGTK 205 (288)
T ss_pred hhhhhhhhhhcccCCEEEECCC
Confidence 1110 1123467899999865
No 75
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.94 E-value=0.0019 Score=63.09 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=55.1
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+ .+.+|+|+|+|+.|..++++|...|+.+|+++... ..|++.+++.+.. ..+..
T Consensus 179 l-~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~~----~~~~~-- 232 (414)
T PRK13940 179 I-SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFRN----ASAHY-- 232 (414)
T ss_pred c-cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhcC----CeEec--
Confidence 5 57899999999999999999999999999997422 1366666655421 22111
Q ss_pred cccCCcchhhhccCCEEEecCCCHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
+ +...+.+.++|+||+|+..+.
T Consensus 233 --~-~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 233 --L-SELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred --H-HHHHHHhccCCEEEECcCCCC
Confidence 1 122567889999999988754
No 76
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.80 E-value=0.0058 Score=50.60 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=53.9
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc--EEEEEec
Q 020259 42 RILVVGA-GGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPHFC 117 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v--~v~~~~~ 117 (328)
||.|||+ |.+|+.++-.|+..|+. +|.|+|.+. .|++..+.-|+...+.. ++....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence 7999999 99999999999999995 599998332 36666676666653333 222222
Q ss_pred ccCCcchhhhccCCEEEecCCC
Q 020259 118 RIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
...+-++++|+||.+...
T Consensus 62 ----~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 ----GDYEALKDADIVVITAGV 79 (141)
T ss_dssp ----SSGGGGTTESEEEETTST
T ss_pred ----ccccccccccEEEEeccc
Confidence 346667899999887553
No 77
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.0099 Score=53.23 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=59.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+++|+|+|-+|..+|++|+..|- .++++|.|. +.+.+.+++. ....++..+-.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~----------------------~~~~~~~~~~---~~~~~v~gd~t~ 55 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE----------------------ERVEEFLADE---LDTHVVIGDATD 55 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH----------------------HHHHHHhhhh---cceEEEEecCCC
Confidence 68999999999999999999997 678877554 1112222211 122222222222
Q ss_pred c---chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 122 K---DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 122 ~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
. ...-+.++|+++.++++......+-.++. ...++|-+.+..
T Consensus 56 ~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~------------~~~gv~~viar~ 100 (225)
T COG0569 56 EDVLEEAGIDDADAVVAATGNDEVNSVLALLAL------------KEFGVPRVIARA 100 (225)
T ss_pred HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHH------------HhcCCCcEEEEe
Confidence 1 12335789999999888776666655553 235677666544
No 78
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.68 E-value=0.0097 Score=50.34 Aligned_cols=32 Identities=28% Similarity=0.616 Sum_probs=26.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.+||+|..|+.+++||..+|. +++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence 479999999999999999999998 78898843
No 79
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.62 E-value=0.012 Score=48.85 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=49.2
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+..+|+|+|+|++|..+++.|...|...++++|.+. .+++.+++.+.... +....
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~-------------------~~~~~~~~~~~~~~--~~~~~---- 72 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL-------------------EKAKALAERFGELG--IAIAY---- 72 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhcc--cceee----
Confidence 478999999999999999999999866899987432 23444444443211 11111
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
. ...+.++++|+||.|+..
T Consensus 73 -~-~~~~~~~~~Dvvi~~~~~ 91 (155)
T cd01065 73 -L-DLEELLAEADLIINTTPV 91 (155)
T ss_pred -c-chhhccccCCEEEeCcCC
Confidence 1 123336889999999765
No 80
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.61 E-value=0.0087 Score=56.08 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=51.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEEEEE
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVPH 115 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v~~~ 115 (328)
.+|.|||+|++|+.++..|+..|+. +|.++|.+ ..|++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999843 2355666666655432 222221
Q ss_pred ecccCCcchhhhccCCEEEecCCC
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
.+.+-++++|+||.|+..
T Consensus 61 ------~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 ------GDYSDCKDADIVVITAGA 78 (306)
T ss_pred ------CCHHHhCCCCEEEEccCC
Confidence 123446899999998764
No 81
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.54 E-value=0.013 Score=50.93 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=55.2
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
+ ++.+++|+|. |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 26 l-~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 26 L-KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 5 5789999996 9999999999999884 89988633 246666777665432 3333332
Q ss_pred ecccCCcchhhhccCCEEEecCCCH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
...-.+...+.++++|+||.++...
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCCCC
Confidence 1110111246678999999997653
No 82
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.47 E-value=0.0065 Score=51.90 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.2
Q ss_pred HHcCCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVGAGGL-GCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG~ggl-G~evaknL~l~Gvg~itlvD~ 72 (328)
| .+++|+|||.|.+ |..++++|...|+ ++++++.
T Consensus 42 l-~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 42 L-AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred C-CCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 6 6899999999985 8889999999999 7998874
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.45 E-value=0.017 Score=54.23 Aligned_cols=75 Identities=25% Similarity=0.405 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
...+|+|+|+|.+|..++++|...|..+++++|.+. .|++.+++.+.. .+..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~~---- 228 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAVP---- 228 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEEe----
Confidence 489999999999999999999998999999987432 355555544321 1111
Q ss_pred cCCcchhhhccCCEEEecCCCHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEA 142 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~ 142 (328)
. +...+.+.++|+||.|+.+...
T Consensus 229 ~-~~~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 229 L-DELLELLNEADVVISATGAPHY 251 (311)
T ss_pred H-HHHHHHHhcCCEEEECCCCCch
Confidence 1 1124556789999999887665
No 84
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.39 E-value=0.013 Score=55.16 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc-EEEEEec
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV-NIVPHFC 117 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v-~v~~~~~ 117 (328)
..||.|||+|.+|+.++-.|+..|+- +|.|+|- .+.|++..+.-|+...|.. ++....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~- 65 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA- 65 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe-
Confidence 56999999999999999999999995 7999983 2345666677777665432 222211
Q ss_pred ccCCcchhhhccCCEEEecCC
Q 020259 118 RIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+.+-++++|+||.+..
T Consensus 66 ----~~~~~~~~adivIitag 82 (315)
T PRK00066 66 ----GDYSDCKDADLVVITAG 82 (315)
T ss_pred ----CCHHHhCCCCEEEEecC
Confidence 23455799999977644
No 85
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.25 E-value=0.03 Score=42.58 Aligned_cols=78 Identities=18% Similarity=0.379 Sum_probs=49.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 42 RILVVGAGGLGCELLKDLALSGF--KNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv--g~itlv-D~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
||.+||+|.+|..+++.|...|+ .++.++ +.+. .|++. +.+..+ +.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~~~----~~~~~~-~~~~----- 51 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKAAE----LAKEYG-VQAT----- 51 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHHHH----HHHHCT-TEEE-----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHHHH----HHHhhc-cccc-----
Confidence 58999999999999999999994 355544 3111 23333 333333 1111
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~ 149 (328)
.....+.++.+|+||.|+.+......+.++
T Consensus 52 -~~~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 52 -ADDNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -SEEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -cCChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 113567778999999999987776666655
No 86
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.25 E-value=0.015 Score=51.42 Aligned_cols=84 Identities=24% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++++|+|||.|.+|..=++.|..+|. +++++-++. + +. +...+.+ ++ +....
T Consensus 10 l-~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~-----------------~e---l~~~~~~-~~---i~~~~ 62 (210)
T COG1648 10 L-EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E-----------------PE---LKALIEE-GK---IKWIE 62 (210)
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c-----------------HH---HHHHHHh-cC---cchhh
Confidence 5 58899999999999999999999997 788875433 1 11 1111111 21 22222
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
. ....+.+..+++||.|+++.+....+.+.|
T Consensus 63 ~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a 93 (210)
T COG1648 63 R---EFDAEDLDDAFLVIAATDDEELNERIAKAA 93 (210)
T ss_pred c---ccChhhhcCceEEEEeCCCHHHHHHHHHHH
Confidence 2 224455566999999999999888888888
No 87
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.21 E-value=0.032 Score=52.34 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=51.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC---cEEEEEec
Q 020259 42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPHFC 117 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~---v~v~~~~~ 117 (328)
||.|||+|.+|+.+|-.|+..|+ ++|.|+|- .+.|++..+--|+...+. .+++...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~- 60 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA- 60 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence 68999999999999999999998 57999982 234566666666664432 1222222
Q ss_pred ccCCcchhhhccCCEEEecCC
Q 020259 118 RIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+.+-++++|+||.+..
T Consensus 61 ----~~y~~~~~aDivvitaG 77 (307)
T cd05290 61 ----GDYDDCADADIIVITAG 77 (307)
T ss_pred ----CCHHHhCCCCEEEECCC
Confidence 23567899999977754
No 88
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.19 E-value=0.02 Score=42.20 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=42.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV 113 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~ 113 (328)
||+|||.|.+|+|+|..|...|. ++|+++...- +. ...+..-++.+.+.+++. ++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~--gV~v~ 58 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKR--GVEVH 58 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence 68999999999999999999996 8999875442 11 223344466677777776 44443
No 89
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.17 E-value=0.02 Score=48.09 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=53.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHH--hhCCCcEEEEEeccc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM--ERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~--~lnp~v~v~~~~~~~ 119 (328)
||.|+|+|..|+.+|..|+..| .+++|+..+.- .++.+.+.=. ...|+.+... .-.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~ 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence 6899999999999999999999 48999876541 1111111100 0122222211 0112
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.....+.++++|+||.++.+...+..+.++.
T Consensus 60 t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~ 90 (157)
T PF01210_consen 60 TTDLEEALEDADIIIIAVPSQAHREVLEQLA 90 (157)
T ss_dssp ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHT
T ss_pred ccCHHHHhCcccEEEecccHHHHHHHHHHHh
Confidence 2234567899999999999877776666655
No 90
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.14 E-value=0.022 Score=52.45 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=30.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+.+|+|+|+||.+..++..|...|+++|+|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999873
No 91
>PLN00203 glutamyl-tRNA reductase
Probab=96.11 E-value=0.014 Score=58.60 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
.+.+|+|||+|.+|..++++|...|+.++++++.+ ..|++.+++.+ +.+.+...+.
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~- 320 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL- 320 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH-
Confidence 47899999999999999999999999999998632 13555555443 2333222111
Q ss_pred cCCcchhhhccCCEEEecCCCHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
+...+.+.++|+||.|+....
T Consensus 321 --~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 321 --DEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred --hhHHHHHhcCCEEEEccCCCC
Confidence 123466789999999976543
No 92
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.10 E-value=0.0097 Score=58.25 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=52.3
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+ .+.+|+|+|+|.+|..+++.|...|+.+++++|.+. .|++.+++.+. . . ..+
T Consensus 178 l-~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~g----~-~--~i~ 230 (417)
T TIGR01035 178 L-KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKELG----G-E--AVK 230 (417)
T ss_pred c-cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-e--Eee
Confidence 5 578999999999999999999999999999987431 34444444322 1 1 110
Q ss_pred cccCCcchhhhccCCEEEecCCCHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
. +...+.+.++|+||+|+.+..
T Consensus 231 --~-~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 231 --F-EDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred --H-HHHHHHHhhCCEEEECCCCCC
Confidence 0 123456678999999987544
No 93
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.09 E-value=0.055 Score=53.63 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
| ++.+|+|||.|.++..=++.|..+|. ++|++-++. . +.++++-..-+++...
T Consensus 10 l-~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 10 L-RDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence 6 58999999999999999999999997 799974331 1 1111111122344444
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
... ..+.++++++||.|+|+.+.-..+.+.|.
T Consensus 63 ~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~ 94 (457)
T PRK10637 63 GPF---DESLLDTCWLAIAATDDDAVNQRVSEAAE 94 (457)
T ss_pred CCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHH
Confidence 443 35667899999999999988888888883
No 94
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.044 Score=54.75 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=70.9
Q ss_pred cHHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259 30 GTELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS 108 (328)
Q Consensus 30 G~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp 108 (328)
-..-++.+ .+++|+|-| .|++|+|+++.++..+.++|.++|.|. +|-..+...+++..|
T Consensus 241 ~~~i~~~~-~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~ 300 (588)
T COG1086 241 TELIGAML-TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFP 300 (588)
T ss_pred HHHHHhHc-CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCC
Confidence 35667778 799999998 678999999999999999999998555 456667788888888
Q ss_pred CcEEEEEecccCCcc--hhhhcc--CCEEEecC
Q 020259 109 GVNIVPHFCRIEDKD--ISFYND--FNIIVLGL 137 (328)
Q Consensus 109 ~v~v~~~~~~~~~~~--~~~~~~--~dvVi~~~ 137 (328)
..++..+-.++.+.+ ...+++ .|+|+-|.
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAA 333 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAA 333 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEhh
Confidence 889998888887754 555666 88888763
No 95
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.07 E-value=0.04 Score=52.09 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=56.5
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
.++++|||+|+.|...++.|. ..|+.++++++.+ ..|++.+++++++.. .+++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~-g~~v~~~--- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLL-GIDVTAA--- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhc-CceEEEe---
Confidence 458999999999999999997 5788999998532 258888888887543 2344332
Q ss_pred cCCcchhhhccCCEEEecCCCH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
+...+.+.++|+|++|+.+.
T Consensus 186 --~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 186 --TDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred --CCHHHHhccCCEEEEecCCC
Confidence 22355678999999998763
No 96
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.029 Score=52.89 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|.+|+.+|.+++.+|. .++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 899999654
No 97
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.98 E-value=0.038 Score=52.02 Aligned_cols=76 Identities=25% Similarity=0.176 Sum_probs=55.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
...+|+|||+|+.|...++.+.+ .++.+|++++.+ ..|++..++.+++... .+...
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~-- 180 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV-- 180 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe--
Confidence 36899999999999999997765 688899998622 3678888888776422 22221
Q ss_pred ccCCcchhhhccCCEEEecCCCH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
+...+.+.++|+|++|+.+.
T Consensus 181 ---~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 181 ---TDLEAAVRQADIISCATLST 200 (314)
T ss_pred ---CCHHHHHhcCCEEEEeeCCC
Confidence 22355678999999988753
No 98
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.98 E-value=0.035 Score=51.88 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=52.3
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC---cEEEEEecc
Q 020259 43 ILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPHFCR 118 (328)
Q Consensus 43 VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~---v~v~~~~~~ 118 (328)
|.|||+|.+|+.+|-.|+..|+ .+|+|+|.+ +.|++..+..|....+. +++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999998 569999832 34667777777776554 22221
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
..+.+-++++|+||.|...
T Consensus 58 --~~~~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 --GGDYADAADADIVVITAGA 76 (300)
T ss_pred --CCCHHHhCCCCEEEEcCCC
Confidence 1124578999999888653
No 99
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.96 E-value=0.073 Score=42.60 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=54.2
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCC-CCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMED-VGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~d-iG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
||.||| .|-+|.++++.|...- .+.++- ++..+. .|+.=+.... .......+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~-------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVA-------------LVSSSRSAGKPLSEVFP----HPKGFEDLSVED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEE-------------EEESTTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEE-------------eeeeccccCCeeehhcc----ccccccceeEee---
Confidence 699999 9999999999999732 333321 122222 4553222111 111122222222
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 174 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~ 174 (328)
.+.+.+++.|+||.|+++.....+...+. +.++++|+.+
T Consensus 59 --~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~--------------~~g~~ViD~s 97 (121)
T PF01118_consen 59 --ADPEELSDVDVVFLALPHGASKELAPKLL--------------KAGIKVIDLS 97 (121)
T ss_dssp --TSGHHHTTESEEEE-SCHHHHHHHHHHHH--------------HTTSEEEESS
T ss_pred --cchhHhhcCCEEEecCchhHHHHHHHHHh--------------hCCcEEEeCC
Confidence 24455699999999999866666555554 4567777644
No 100
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.92 E-value=0.022 Score=53.12 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=65.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEEecc-c
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHFCR-I 119 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~~~~-~ 119 (328)
+|.+||+|.+|..++++|...|. +++++|.+.-....+.. .|-..+.-..+.++.. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999997 68999876422211110 1111111122222222 355555555443 1
Q ss_pred -CCc---chhhhccCCEEEec-CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259 120 -EDK---DISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (328)
Q Consensus 120 -~~~---~~~~~~~~dvVi~~-~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~ 178 (328)
.+. -...++.-++||++ +.++.....+.+.+ ++.++.++++.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~-------------~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELL-------------AEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHH-------------HHcCCEEEeCCCCcC
Confidence 111 11233445677777 33444444455555 566888888877764
No 101
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.038 Score=54.38 Aligned_cols=35 Identities=34% Similarity=0.369 Sum_probs=31.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++.+|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 57899999999999999999999997 799998653
No 102
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.88 E-value=0.019 Score=56.35 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=52.4
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+ .+.+|+|+|+|.+|..+++.|...|+.+++++|.+. .|++.+++.+. . .+..
T Consensus 180 ~-~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~-- 232 (423)
T PRK00045 180 L-SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG----G-EAIP-- 232 (423)
T ss_pred c-cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC----C-cEee--
Confidence 5 578999999999999999999999999999987432 34444444432 1 1111
Q ss_pred cccCCcchhhhccCCEEEecCCCHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
+ +...+.+.++|+||+|+.+..
T Consensus 233 --~-~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 233 --L-DELPEALAEADIVISSTGAPH 254 (423)
T ss_pred --H-HHHHHHhccCCEEEECCCCCC
Confidence 1 112455678999999987544
No 103
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.87 E-value=0.049 Score=51.41 Aligned_cols=34 Identities=18% Similarity=0.436 Sum_probs=30.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+..||.|||+|.+|+.++-.++..|...+.|+|-
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4679999999999999999999999867999984
No 104
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.79 E-value=0.055 Score=50.66 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=56.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
...+++|+|+|..|...++.+.. .|+.++.++|.+ ..|++..+++++..+. .+. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~- 179 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P- 179 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E-
Confidence 36889999999999999999974 688889998633 3578888888876432 222 1
Q ss_pred ccCCcchhhhccCCEEEecCCC
Q 020259 118 RIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
+..++.+.++|+||.|+.+
T Consensus 180 ---~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 ---LDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred ---CCHHHHhhcCCEEEEccCC
Confidence 2235567899999999886
No 105
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.76 E-value=0.014 Score=52.28 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=34.8
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDR 74 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~ 74 (328)
.+ ++.+|+|+|+|+.|..+++.|...|++ +|+++|.+-
T Consensus 22 ~l-~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KI-EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred Cc-cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 46 688999999999999999999999999 999999763
No 106
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.72 E-value=0.04 Score=52.00 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=31.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+|.|||+|.+|+.++-.|+..|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 46799999999999999999999998889999943
No 107
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.71 E-value=0.027 Score=52.25 Aligned_cols=77 Identities=27% Similarity=0.457 Sum_probs=45.4
Q ss_pred EEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC--cE--EEEEec
Q 020259 43 ILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG--VN--IVPHFC 117 (328)
Q Consensus 43 VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~--v~--v~~~~~ 117 (328)
|||.| +|++|+|+++.|+..|..+|.++|.+.-... .+...+++..|+ ++ +.....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~-------------------~l~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLY-------------------ELERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHH-------------------HHHHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHH-------------------HHHHHHhhcccccCcccccCceee
Confidence 67786 8899999999999999999999997764433 344444443333 32 234445
Q ss_pred ccCCcc--hhhhc--cCCEEEecCC
Q 020259 118 RIEDKD--ISFYN--DFNIIVLGLD 138 (328)
Q Consensus 118 ~~~~~~--~~~~~--~~dvVi~~~d 138 (328)
++.+.. ...++ +.|+|+-+..
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaAA 86 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAAA 86 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE---
T ss_pred cccCHHHHHHHHhhcCCCEEEEChh
Confidence 554432 34455 7788877644
No 108
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.70 E-value=0.054 Score=44.02 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
.-+|.|||+|-+|..+++.|..+|. .|.-+ +. +....++++.+.-+...+..
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~----- 61 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-------RSPASAERAAAFIGAGAILD----- 61 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-------CHH-HHHHHHC--TT----------
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-------CCcccccccccccccccccc-----
Confidence 4679999999999999999999997 45443 22 23344555555544433221
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+.++.+|+|+.++.+.........++
T Consensus 62 ---~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 ---LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp ---TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred ---cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2455688999988876655554444444
No 109
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.70 E-value=0.043 Score=51.60 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc---EEEEE
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV---NIVPH 115 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v---~v~~~ 115 (328)
..||.|||+|.+|+.+|-.|+..|.. +|.|+|-. +.|++..+.-|+...|.. ++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46899999999999999999999985 69999832 235666666666654332 23221
Q ss_pred ecccCCcchhhhccCCEEEecCC
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+.+.++++|+||.+..
T Consensus 64 ------~dy~~~~~adivvitaG 80 (312)
T cd05293 64 ------KDYSVTANSKVVIVTAG 80 (312)
T ss_pred ------CCHHHhCCCCEEEECCC
Confidence 13345899999987644
No 110
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.67 E-value=0.079 Score=49.53 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=29.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999997 79999854
No 111
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.63 E-value=0.054 Score=48.19 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=58.4
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
..++++++| +||+|-+++|.|...|+..+.|.|... | -.+...|++.||.+++.....
T Consensus 4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~~ 62 (261)
T KOG4169|consen 4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIKC 62 (261)
T ss_pred cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEEe
Confidence 367788885 999999999999999998877765211 1 234567899999999999998
Q ss_pred ccCCcc---------hhhhccCCEEEec
Q 020259 118 RIEDKD---------ISFYNDFNIIVLG 136 (328)
Q Consensus 118 ~~~~~~---------~~~~~~~dvVi~~ 136 (328)
++.... ...+...|++|+.
T Consensus 63 DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 63 DVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred ccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 887631 1234567888876
No 112
>PLN02602 lactate dehydrogenase
Probab=95.61 E-value=0.059 Score=51.51 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=51.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcEEEEEe
Q 020259 41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPHF 116 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~v~~~~ 116 (328)
.||.|||+|.+|+.+|-.|+..|+ .+|.|+|- .+.|++..+--|+...| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 57999983 22345555555555433 2333321
Q ss_pred cccCCcchhhhccCCEEEecCC
Q 020259 117 CRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+.+.++++|+||.+..
T Consensus 98 -----~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 -----TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred -----CCHHHhCCCCEEEECCC
Confidence 13455899999988754
No 113
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.56 E-value=0.055 Score=49.66 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=50.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
...+++|+|+||+|..++..|+..|. +++++|.+ ..|++.+++.+.+. +.+. ...
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~~~--~~~-- 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GEIQ--AFS-- 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-CceE--Eec--
Confidence 36789999999999999999999996 89998632 24677777776543 2222 111
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
. ......++|+||+|+..
T Consensus 171 ~---~~~~~~~~DivInatp~ 188 (270)
T TIGR00507 171 M---DELPLHRVDLIINATSA 188 (270)
T ss_pred h---hhhcccCccEEEECCCC
Confidence 1 11123578999999764
No 114
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.48 E-value=0.062 Score=50.31 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4579999999999999999999997 78999865
No 115
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.39 E-value=0.15 Score=47.67 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d 73 (328)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4679999999999999999999997 478888743
No 116
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.35 E-value=0.12 Score=51.59 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCCh---HHHHHHHHHHhh-CCCcEEEEE
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP---KAEVAAKRVMER-VSGVNIVPH 115 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~---Ka~a~~~~l~~l-np~v~v~~~ 115 (328)
-++|.+||+|..|+.+|+||+..|. +++++|.+.=....+...+ .. .|.. -+....+.++.+ .|++-+...
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~-~~---~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-KK---EGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh-hh---cCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 3579999999999999999999998 8999986432111111100 00 0110 111222233221 255555444
Q ss_pred eccc--CCc---chhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259 116 FCRI--EDK---DISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (328)
Q Consensus 116 ~~~~--~~~---~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~ 178 (328)
+..- ++. -.+.++.-|+||++.. +++.-..+.+.+ .+.++.|+++.+.|.
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l-------------~~~Gi~fldapVSGG 136 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA-------------AEKGLLYLGMGVSGG 136 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-------------HHcCCeEEeCCCcCC
Confidence 3321 110 1223456678888844 455555555555 567899999988764
No 117
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.046 Score=50.71 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=30.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|..|+.+|.+++++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999998 799999554
No 118
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.32 E-value=0.034 Score=52.66 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=32.9
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| .+.+|+|||+|-+|.-++++|...|+++|++....
T Consensus 172 l-~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 172 S-KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred c-cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 6 68999999999999999999999999999998544
No 119
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.26 E-value=0.094 Score=49.31 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=54.1
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+.|...|+ ++..+|...-.. +.+. .
T Consensus 132 ~~l-~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~------------------------------~~~~--~ 177 (312)
T PRK15469 132 YHR-EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSW------------------------------PGVQ--S 177 (312)
T ss_pred CCc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCC------------------------------CCce--e
Confidence 457 58999999999999999999999998 677777421000 0100 0
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVA 150 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~ 150 (328)
.. . ...-.+.++++|+|+.++. +.+++..++.-.
T Consensus 178 ~~-~-~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 178 FA-G-REELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred ec-c-cccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 00 0 1123577889999988754 667777777544
No 120
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.26 E-value=0.11 Score=48.99 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=56.0
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..+++|||+|+.|...+..+. ..|+.++.++|.+ ..|++.+++++++.. .+++...
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~--- 183 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV--- 183 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe---
Confidence 577999999999998888775 5689999998633 257788888877543 2333332
Q ss_pred cCCcchhhhccCCEEEecCCCHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIE 141 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~ 141 (328)
+..++.+.++|+|++|+.+.+
T Consensus 184 --~~~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 184 --NSADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred --CCHHHHHhcCCEEEEccCCCC
Confidence 123556789999999988754
No 121
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.20 E-value=0.24 Score=46.70 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=53.5
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
+.| ++++|.|||+|.+|..+|+||..+|+ ++++.|... ++. +...+ ..+++.
T Consensus 12 ~~L-kgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~--------------------~s~---~~A~~--~G~~v~- 63 (335)
T PRK13403 12 ELL-QGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPG--------------------KSF---EVAKA--DGFEVM- 63 (335)
T ss_pred hhh-CcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcc--------------------hhh---HHHHH--cCCEEC-
Confidence 668 69999999999999999999999999 677765211 110 01111 122210
Q ss_pred EecccCCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 148 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~ 148 (328)
...+.++.+|+|+.++.+...+..+++
T Consensus 64 -------sl~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 64 -------SVSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred -------CHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 246778899999888766666665553
No 122
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.044 Score=50.75 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=29.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 79999854
No 123
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.13 E-value=0.15 Score=48.39 Aligned_cols=76 Identities=25% Similarity=0.249 Sum_probs=55.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..+++|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++++++.. .+++...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~--- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVA--- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEe---
Confidence 3689999999999999999985 578899998532 247888888876533 2333322
Q ss_pred cCCcchhhhccCCEEEecCCCH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
+...+.+.++|+|++|+...
T Consensus 189 --~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 --RDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred --CCHHHHHccCCEEEEeeCCC
Confidence 12356678899999997763
No 124
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.11 Score=51.75 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=34.2
Q ss_pred ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 29 PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 29 ~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|...|..-....+|+|+|+|++|.++|+.|...|. +++++|..
T Consensus 5 ~~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 5 PGLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cchhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 344444332146789999999999999999999998 69999854
No 125
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.10 E-value=0.19 Score=45.76 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=50.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
.+|.|||+|.+|..+++.|...|. ..+.++|.+. .+++. +.+.. .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~----~~~~~-g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAA----LAEEY-GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHH----HHHhc-CCee------
Confidence 469999999999999999999984 3566665221 12222 22211 1221
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.....+.+.++|+||.|+.....+..+..+.
T Consensus 53 -~~~~~~~~~~advVil~v~~~~~~~v~~~l~ 83 (267)
T PRK11880 53 -ATDNQEAAQEADVVVLAVKPQVMEEVLSELK 83 (267)
T ss_pred -cCChHHHHhcCCEEEEEcCHHHHHHHHHHHH
Confidence 1223455678999999987766665555543
No 126
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.02 E-value=0.037 Score=55.00 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
++|.|||+|..|..+|.||+..|. +++++|.+.=
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence 579999999999999999999998 7999986543
No 127
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.01 E-value=0.15 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhC
Q 020259 40 YARILVVGAGGLGCELLKDLALSG 63 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~G 63 (328)
.++|+|+|+|.+|..+++.|+..+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~ 592 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVK 592 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCc
Confidence 579999999999999999998753
No 128
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.00 E-value=0.19 Score=46.35 Aligned_cols=40 Identities=28% Similarity=0.474 Sum_probs=35.7
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDRI 75 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~----Gv------g~itlvD~d~v 75 (328)
++| ++.+|+++|+|+.|.-+++.|+.+ |+ ++|.++|.+=+
T Consensus 21 ~~l-~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPL-SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CCh-hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 568 699999999999999999999998 99 79999996643
No 129
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.98 E-value=0.17 Score=47.36 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4579999999999999999999996 79998753
No 130
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.95 E-value=0.14 Score=41.31 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=53.1
Q ss_pred cEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|...= . +-..|+| +.+..-...+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~-~~g~d~g--------~~~~~~~~~~~v------- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------A-KVGKDVG--------ELAGIGPLGVPV------- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------T-TTTSBCH--------HHCTSST-SSBE-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------c-cccchhh--------hhhCcCCccccc-------
Confidence 6999999 9999999999998 66644555554330 0 0112222 111111112221
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 175 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~ 175 (328)
.+..++.+..+|+||+.+ +++.....-+.| .++++|++.+.+
T Consensus 58 ~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~-------------~~~g~~~ViGTT 99 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFT-NPDAVYDNLEYA-------------LKHGVPLVIGTT 99 (124)
T ss_dssp BS-HHHHTTH-SEEEEES--HHHHHHHHHHH-------------HHHT-EEEEE-S
T ss_pred chhHHHhcccCCEEEEcC-ChHHhHHHHHHH-------------HhCCCCEEEECC
Confidence 233456667799999998 445555555555 456898886433
No 131
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.93 E-value=0.12 Score=48.46 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=28.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999997 689988643
No 132
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.93 E-value=0.13 Score=48.54 Aligned_cols=83 Identities=22% Similarity=0.135 Sum_probs=53.5
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..+ +.++|.|+|+|++|.++|+.|.-.| -.|.--. |+- .+.+...+ .+..
T Consensus 158 ~~~-~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~----------r~~---------~~~~~~~~----~~~~----- 207 (336)
T KOG0069|consen 158 YDL-EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHS----------RTQ---------LPPEEAYE----YYAE----- 207 (336)
T ss_pred ccc-cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeec----------ccC---------CchhhHHH----hccc-----
Confidence 446 5999999999999999999999866 3343321 110 01111111 1211
Q ss_pred EecccCCcchhhhccCCEEEe-cCCCHHHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVL-GLDSIEARSYINAVACS 152 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~-~~d~~~~~~~l~~~~~~ 152 (328)
....++.+.++|+|+. |-.+.+++..+|.....
T Consensus 208 -----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~ 241 (336)
T KOG0069|consen 208 -----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIE 241 (336)
T ss_pred -----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH
Confidence 1234678889998854 56788899999986654
No 133
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.91 E-value=0.11 Score=48.64 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 020259 42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDM 72 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~ 72 (328)
+|.|||+|.+|+.+|-.|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 68999984
No 134
>PRK07680 late competence protein ComER; Validated
Probab=94.88 E-value=0.15 Score=46.89 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=50.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+|.|||+|.+|..+++.|...|. ..++++|.+. .+++ .+.+..+.+++.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~----- 53 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA----- 53 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE-----
Confidence 58999999999999999999985 4567765321 1222 222222333221
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
....+.+.++|+||.|+.+......+..+.
T Consensus 54 --~~~~~~~~~aDiVilav~p~~~~~vl~~l~ 83 (273)
T PRK07680 54 --KTIEEVISQSDLIFICVKPLDIYPLLQKLA 83 (273)
T ss_pred --CCHHHHHHhCCEEEEecCHHHHHHHHHHHH
Confidence 123455678999999987655555555543
No 135
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.86 E-value=0.68 Score=36.20 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=51.9
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCc
Q 020259 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK 122 (328)
Q Consensus 43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~ 122 (328)
|+|+|+|.+|-++++.|...| -.++++|.|.- + .+.+++.. +. ....+..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~--~~--~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG--VE--VIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT--SE--EEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc--cc--cccccchhh
Confidence 689999999999999999955 48999996641 1 23333332 22 333433332
Q ss_pred ---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 123 ---DISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 123 ---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
...-+++++.|+.++++......+-..++
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r 84 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLAR 84 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHH
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHH
Confidence 23345789999999888766655555553
No 136
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.86 E-value=0.14 Score=47.96 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=51.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec---
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC--- 117 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~--- 117 (328)
.||+|+|+|++|+-.+-.|.++| ..++++-.+. + .+++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------R----LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------H----HHHHHhC--CeEEecCCCccc
Confidence 37999999999999999999999 6777752111 1 2333332 334443333
Q ss_pred --ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 118 --RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 118 --~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.......+....+|+||.++-+......+..+.
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~ 88 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLA 88 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhh
Confidence 111223455668999988876655444444433
No 137
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=94.80 E-value=0.082 Score=52.51 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=66.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEEecc--
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHFCR-- 118 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~~~~-- 118 (328)
+|.+||+|..|..+|+||+..|. +++++|.+.-....+...+. .. -+-.-+....+..+.+ .|++-+...+..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~--~g-~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA--KG-KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc--CC-CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999998 79999876543332221100 00 0000011122333322 355555444331
Q ss_pred cCCc---chhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259 119 IEDK---DISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178 (328)
Q Consensus 119 ~~~~---~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~ 178 (328)
+.+. -...++.-|+||++.. .+..-....+.+ .+.++.|+++++.|-
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l-------------~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKEL-------------KAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHH-------------HhcCCEEEcCCCCCC
Confidence 1111 1234456689998854 333323333344 466888999988763
No 138
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.77 E-value=0.074 Score=49.57 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999996 788888654
No 139
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.76 E-value=0.33 Score=46.06 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=32.6
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..| .+.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 142 ~~l-~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 142 KPV-KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred ccc-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 458 68999999999999999999999997 78888854
No 140
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.73 E-value=0.065 Score=40.19 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=34.0
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
+ +..+++|+|+|.+|..++..|...|..++.++|.|.+
T Consensus 21 ~-~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~ 58 (86)
T cd05191 21 L-KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDIL 58 (86)
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 6 5889999999999999999999998889999998443
No 141
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.2 Score=46.86 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=44.3
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
| +..+++|.| .+|+|.++++.|+..|. ++.+++.+. .|++.+.+.+.+.+|..++...
T Consensus 12 l-~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 12 L-SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred c-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 5 577888887 78999999999999997 777765321 3455555666655555555555
Q ss_pred ecccCC
Q 020259 116 FCRIED 121 (328)
Q Consensus 116 ~~~~~~ 121 (328)
..++.+
T Consensus 71 ~~Dl~d 76 (313)
T PRK05854 71 ALDLSS 76 (313)
T ss_pred EecCCC
Confidence 555543
No 142
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.64 E-value=0.21 Score=46.26 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=28.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999995 79999853
No 143
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.26 Score=44.33 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=53.3
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
| ++++++|.| .||+|.++++.|+..|. ++.++|.+ ..+.+.+++.+.+.++..++..+
T Consensus 5 l-~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 5 L-AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred c-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 6 578899998 68999999999999997 67777632 23455556666654455566666
Q ss_pred ecccCCcc--hh-------hhccCCEEEecC
Q 020259 116 FCRIEDKD--IS-------FYNDFNIIVLGL 137 (328)
Q Consensus 116 ~~~~~~~~--~~-------~~~~~dvVi~~~ 137 (328)
..++.+.. .. .+...|++|.+.
T Consensus 64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 94 (260)
T PRK07063 64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA 94 (260)
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence 66655421 11 234678887764
No 144
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.60 E-value=0.33 Score=39.96 Aligned_cols=81 Identities=15% Similarity=0.330 Sum_probs=49.4
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe------
Q 020259 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF------ 116 (328)
Q Consensus 43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~------ 116 (328)
|+|+|+|++|+-+|-.|..+|. ++++++... . .+.+++. .+.++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~-----------------------~~~~~~~--g~~~~~~~~~~~~~ 53 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-R-----------------------LEAIKEQ--GLTITGPDGDETVQ 53 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-H-----------------------HHHHHHH--CEEEEETTEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-c-----------------------HHhhhhe--eEEEEecccceecc
Confidence 7899999999999999999887 688876332 1 1222221 12221111
Q ss_pred -cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 -CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 -~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
...........+.+|+||.|+-+......+..+.
T Consensus 54 ~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~ 88 (151)
T PF02558_consen 54 PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLK 88 (151)
T ss_dssp EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred cccccCcchhccCCCcEEEEEecccchHHHHHHHh
Confidence 0000011235678999999988877776666643
No 145
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.18 Score=46.86 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=29.3
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.+ ++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 13 ~~-~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 13 DQ-SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred cC-CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 46 578899998 68999999999999997 6777664
No 146
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.58 E-value=0.22 Score=45.85 Aligned_cols=80 Identities=16% Similarity=0.330 Sum_probs=51.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+.+|.+||+|-+|..++++|...|. .+|.++|.+ +.+++ .+.+.. .+++ .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~----~l~~~~-g~~~--~- 54 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLK----NASDKY-GITI--T- 54 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHH----HHHHhc-CcEE--e-
Confidence 5689999999999999999999885 246665421 12322 222211 2221 1
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
....+..+++|+||.|+-+......+.++.
T Consensus 55 ----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 55 ----TNNNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 123455678999999988766666666554
No 147
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.55 E-value=0.093 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259 37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD 71 (328)
+ +.++|+|+|.|+ +|..++..|...|. .+|+++
T Consensus 157 l-~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 157 L-AGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred C-CCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 5 578999999999 99999999999998 999986
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.55 E-value=0.15 Score=46.92 Aligned_cols=33 Identities=27% Similarity=0.605 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 899998553
No 149
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.54 E-value=0.3 Score=50.39 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
..+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++ .+++. +.+ .+..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCe--EEEEeC
Confidence 4789999999999999999999998 7899997752 232 22222 222 233333
Q ss_pred CCc---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
.+. ...-++++|+||.++++.+....+-..++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar 486 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVK 486 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHH
Confidence 322 22345689999999999887776666664
No 150
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.51 E-value=0.34 Score=43.43 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=50.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
+..+|.|||+|.+|..+++.|...|. ..+.+++.. ...|++.+++. . .+++ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~----~-~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQAR----Y-NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHHH----c-CcEE--e
Confidence 36789999999999999999998873 224443311 01233322222 2 2221 1
Q ss_pred ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
....+.++++|+|+.|+.+...+..+.++.
T Consensus 58 -----~~~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 -----TDWKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred -----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 123455688999999988766655555443
No 151
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.41 E-value=0.17 Score=46.60 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=28.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999997 78888853
No 152
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.41 E-value=0.37 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 58889999999999999999999999 799988554
No 153
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.40 E-value=0.12 Score=48.95 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=50.5
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEE
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNI 112 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gv-g-----~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v 112 (328)
.||.|||+ |.+|+.++-.|+..|+ + +|.|+|-.. .+.|++..+.-|+... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~- 65 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA- 65 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence 58999998 9999999999999988 4 688887221 1223444455555544 3221
Q ss_pred EEEecccCCcchhhhccCCEEEecCC
Q 020259 113 VPHFCRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~dvVi~~~d 138 (328)
.. .+...+.+-++++|+||.+..
T Consensus 66 ~~---~i~~~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 66 GV---VATTDPEEAFKDVDAALLVGA 88 (323)
T ss_pred Cc---EEecChHHHhCCCCEEEEeCC
Confidence 00 122235677899999977644
No 154
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.38 E-value=0.15 Score=48.18 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999996 68898764
No 155
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.37 E-value=0.43 Score=44.01 Aligned_cols=80 Identities=9% Similarity=0.229 Sum_probs=51.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .|. +.+.+..+.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~------ 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVEL------ 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEE------
Confidence 69999999999999999999983 46777664310 121 122222233221
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.....+..+++|+||.|+-.......+.++.
T Consensus 55 -~~~~~e~~~~aDvVilavpp~~~~~vl~~l~ 85 (277)
T PRK06928 55 -ADNEAEIFTKCDHSFICVPPLAVLPLLKDCA 85 (277)
T ss_pred -eCCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence 1123455678999999988766666665553
No 156
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.36 E-value=0.19 Score=48.80 Aligned_cols=93 Identities=16% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---------C--C-----------hHHH
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---------G--K-----------PKAE 97 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---------G--~-----------~Ka~ 97 (328)
+.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. ...++-+-..|. | + ....
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 6789999999999999999998887 7888888755322 111111111111 1 1 2233
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCcchhhh--ccCCEEEec
Q 020259 98 VAAKRVMERVSGVNIVPHFCRIEDKDISFY--NDFNIIVLG 136 (328)
Q Consensus 98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~--~~~dvVi~~ 136 (328)
.++..++++||++++.+...+-. +.+.+ .++|.||..
T Consensus 318 ~ivL~ar~l~p~~kIIa~v~~~~--~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 318 FVVLAAKEMSSDVKTVAAVNDSK--NLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHhCCCCcEEEEECCHH--HHHHHHhcCCCEEECH
Confidence 34456788899888777654422 23332 367887765
No 157
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=94.36 E-value=0.096 Score=49.07 Aligned_cols=31 Identities=39% Similarity=0.630 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEe
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFK-NLEVID 71 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD 71 (328)
.||.|||+|.+|+.+|-.|+.-+++ .+.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence 3799999999999999999999999 999998
No 158
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.32 E-value=0.24 Score=48.60 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=53.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
...+|+|+|+|.+|..+++.|...|. .++++|.+. .+. +.+++..+++.+ ...+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~-------------------~~~----~~~~~~~~~~~~--i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP-------------------ERA----EELAEELPNTLV--LHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHH----HHHHHHCCCCeE--EECC
Confidence 36889999999999999999999898 689998543 111 222322233332 2222
Q ss_pred cCCc---chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 119 IEDK---DISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 119 ~~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+. ....++++|.||.++++......+...+
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~ 318 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLA 318 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHH
Confidence 2221 1234578999998887755544443444
No 159
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.30 E-value=0.33 Score=44.92 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=28.2
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999997 68888754
No 160
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.27 E-value=0.37 Score=43.79 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=46.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+|.|||+|.+|..+++.|...|.. .+.+.|. ...|++.++ +..+.+++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~~l~----~~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAARLA----ERFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHHHHH----HHcCCceEe------
Confidence 599999999999999999998852 2333331 112333333 222333221
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINA 148 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~ 148 (328)
....+..+++|+|+.|+.+......+..
T Consensus 53 -~~~~~~~~~aDvVilav~p~~~~~vl~~ 80 (258)
T PRK06476 53 -KDNQAVVDRSDVVFLAVRPQIAEEVLRA 80 (258)
T ss_pred -CCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence 2234556789999999886545444443
No 161
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.27 E-value=0.39 Score=44.18 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=51.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
..+|.+||+|.+|..++++|...|+ ..++++|... ..|++.+++ .. .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~l~~----~~-g~~~~--- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQELHQ----KY-GVKGT--- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHHHHH----hc-CceEe---
Confidence 4589999999999999999999983 2344433100 012222222 11 23221
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
....+..+++|+||.|+.+......+..+.
T Consensus 57 ----~~~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 ----HNKKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred ----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 123455678999999998877777676554
No 162
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.25 E-value=0.19 Score=48.23 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=55.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hC----
Q 020259 40 YARILVVGAGGLGCELLKDLALSGF------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RV---- 107 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gv------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--ln---- 107 (328)
..+|.|+|+|+-|+.+|..|+..|. .+++++..+..- -++. ..+.+++ .|
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~----~~~~in~~~~N~~yl 72 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEK----LSDIINTKHENVKYL 72 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchH----HHHHHHhcCCCcccC
Confidence 4599999999999999999999883 467777533210 0111 1222222 11
Q ss_pred CCcEEEEEeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 108 SGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 108 p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
|+++. +..+ .....+.++++|+||.++.+...+..+.++.
T Consensus 73 p~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 73 PGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 22221 1111 1223456789999999999877776666554
No 163
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.20 E-value=0.2 Score=48.26 Aligned_cols=32 Identities=34% Similarity=0.688 Sum_probs=29.0
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6799998 99999999999999996 69999864
No 164
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.20 E-value=0.27 Score=45.92 Aligned_cols=32 Identities=31% Similarity=0.597 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.||.|||+|.+|+.++..++..|.+++.|+|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 48999999999999999999998669999985
No 165
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.18 E-value=0.22 Score=48.86 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCCCccHHHH----HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEE
Q 020259 24 GPTFEPGTELR----DDLQEYARILVVGAGGLGCELLKDLALSGFKNLE 68 (328)
Q Consensus 24 rq~~l~G~~~q----~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~it 68 (328)
+|-|+|+.+.. ..| ++++|+|||+|++|..-|.||--+|+ +++
T Consensus 17 ~~~r~~~r~ef~~~~~~L-kgKtIaIIGyGSqG~AqAlNLrdSGv-nVv 63 (487)
T PRK05225 17 GKCRFMDRDEFADGASYL-KGKKIVIVGCGAQGLNQGLNMRDSGL-DIS 63 (487)
T ss_pred ccceecchhhccchhHHh-CCCEEEEEccCHHHHHHhCCCccccc-eeE
Confidence 45688887665 779 79999999999999999999999999 444
No 166
>PRK09242 tropinone reductase; Provisional
Probab=94.18 E-value=0.45 Score=42.69 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=56.8
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
| ++++++|.| .|++|.++++.|+..|. ++++++.+ ..+.+.+.+.+...+|..++..+
T Consensus 7 ~-~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 7 L-DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred c-CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 5 578899998 58999999999999997 68887632 12455566667666677777777
Q ss_pred ecccCCcc---------hhhhccCCEEEecCC
Q 020259 116 FCRIEDKD---------ISFYNDFNIIVLGLD 138 (328)
Q Consensus 116 ~~~~~~~~---------~~~~~~~dvVi~~~d 138 (328)
..++.+.. .+.+.+.|+||.+..
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 66665421 122456788887753
No 167
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=94.13 E-value=0.2 Score=46.38 Aligned_cols=31 Identities=29% Similarity=0.630 Sum_probs=29.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD 71 (328)
..+|-.||+|-.|+.+++||+.+|. ++|++|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~d 65 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYD 65 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCC-EEEEEe
Confidence 6889999999999999999999998 799998
No 168
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.49 Score=42.09 Aligned_cols=78 Identities=18% Similarity=0.382 Sum_probs=53.1
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+.+++|.| .||+|.++++.|+..|. ++++++.+. .+.+.+.+.+.+.+|..++.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56788987 89999999999999996 788876431 2344555566666677777777666
Q ss_pred cCCcc---------hhhhccCCEEEecC
Q 020259 119 IEDKD---------ISFYNDFNIIVLGL 137 (328)
Q Consensus 119 ~~~~~---------~~~~~~~dvVi~~~ 137 (328)
+.+.. .+.+.+.|+||.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 62 VNDHDQVFEVFAEFRDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 65431 11234578777764
No 169
>PRK07062 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.44 Score=42.96 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=54.0
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
| ++..++|.|+ +|+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..|..++...
T Consensus 6 l-~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 64 (265)
T PRK07062 6 L-EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAA 64 (265)
T ss_pred c-CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 5 5778999984 7999999999999998 577776432 2444555666666666666666
Q ss_pred ecccCCcc---------hhhhccCCEEEecC
Q 020259 116 FCRIEDKD---------ISFYNDFNIIVLGL 137 (328)
Q Consensus 116 ~~~~~~~~---------~~~~~~~dvVi~~~ 137 (328)
..++.+.. .+.+...|++|.+.
T Consensus 65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 65655421 11235678887764
No 170
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.10 E-value=0.6 Score=41.35 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=51.2
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC--CcEEEEEecc
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS--GVNIVPHFCR 118 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp--~v~v~~~~~~ 118 (328)
+|.||| +|.+|+.+++.|+..| .++++++.+. .|++.+.+....... ........
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~-- 59 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTG-- 59 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEE--
Confidence 699997 8999999999999999 4787776321 233333332221111 11111110
Q ss_pred cCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~ 149 (328)
....+..+++|+||.|+-.......+..+
T Consensus 60 --~~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 60 --ADNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred --eChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 12245577899999998876666555544
No 171
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.08 E-value=0.16 Score=47.95 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=29.5
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeC
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFK-NLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg-~itlvD~ 72 (328)
+-.||+|+|+ |.+|+.++-.|+..|.. +|.|+|-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4569999998 99999999999977774 7999995
No 172
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.04 E-value=0.17 Score=46.22 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=46.9
Q ss_pred EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEE
Q 020259 43 ILVVGA-GGLGCELLKDLALSG--F-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPH 115 (328)
Q Consensus 43 VliiG~-gglG~evaknL~l~G--v-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~ 115 (328)
|.|||+ |.+|..++..|+..| . .+|.|+|-+. .|++.....++... +..+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~- 60 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSI- 60 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEE-
Confidence 579999 999999999999998 4 5899998433 12223333344432 2334433
Q ss_pred ecccCCcchhhhccCCEEEecCC
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+...+-++++|+||.+..
T Consensus 61 ----~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 61 ----TDDPYEAFKDADVVIITAG 79 (263)
T ss_pred ----CCchHHHhCCCCEEEECCC
Confidence 1112566799999988653
No 173
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.01 E-value=0.25 Score=45.75 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999997 78888754
No 174
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.99 E-value=0.34 Score=44.92 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=27.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999996 6888874
No 175
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.97 E-value=0.56 Score=46.98 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 799998643
No 176
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.94 E-value=0.46 Score=48.78 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+.+|+|+|.|.+|..+++.|...|+ +++++|.|.- +++ .+++. +.+ ++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY--GYK--VYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC--CCe--EEEeeC
Confidence 4789999999999999999999998 7899997651 222 22332 222 233333
Q ss_pred CCc---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259 120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVAC 151 (328)
Q Consensus 120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~ 151 (328)
.+. ...-++++|+||.++++.+....+-..++
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r 486 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQ 486 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHH
Confidence 221 12335689999999998877666656663
No 177
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.85 E-value=0.49 Score=46.44 Aligned_cols=31 Identities=39% Similarity=0.677 Sum_probs=27.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|+|+|+|.+|..+++.|...|. .++++|.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 69999999999999999999997 68888743
No 178
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.83 E-value=0.45 Score=44.77 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=28.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|.|+|+|++|+.++..|+.+|. ++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 59999999999999999999995 688987543
No 179
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.81 E-value=0.31 Score=45.40 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=28.1
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 43 VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
|.|||+|.+|+.++-.|+..|..+++++|-+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999887699999965
No 180
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.71 E-value=0.39 Score=39.81 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=52.8
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~ 120 (328)
.|+|+| .+|+|.++++.|+..|-.++.++..+ ....+.+.+.+.+.+.+ .++.....++.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~~ 62 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDLS 62 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESETT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccccc
Confidence 578887 89999999999999998888887644 11245666666677544 56666666654
Q ss_pred Ccc---------hhhhccCCEEEecCC
Q 020259 121 DKD---------ISFYNDFNIIVLGLD 138 (328)
Q Consensus 121 ~~~---------~~~~~~~dvVi~~~d 138 (328)
+.. .+.+...|++|.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 63 DPESIRALIEEVIKRFGPLDILINNAG 89 (167)
T ss_dssp SHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred ccccccccccccccccccccccccccc
Confidence 421 123356788876643
No 181
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.67 E-value=0.57 Score=47.64 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=30.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+.+|+|+|+|.+|.++++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 5899999999999999999999997 689999664
No 182
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.62 E-value=0.45 Score=45.83 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=27.9
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 4678999999 999999999999653336887875
No 183
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.62 E-value=0.25 Score=43.82 Aligned_cols=34 Identities=35% Similarity=0.447 Sum_probs=29.2
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+|+|.| .|++|..+++.|...|. ++++++.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 577899998 79999999999999997 67777644
No 184
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.61 E-value=0.12 Score=48.78 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=28.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeC
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFK------NLEVIDM 72 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg------~itlvD~ 72 (328)
.||.|||+ |.+|+.+|-.|+..|+- +|.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 99999999999998884 6999983
No 185
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=93.55 E-value=0.25 Score=49.30 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.8
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+++|+|+||+|..+++.|+..|. +++++|.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46789999999999999999999998 8888763
No 186
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.55 E-value=0.38 Score=43.81 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=48.8
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC---CeEEEE-eCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 42 RILVVGAGGLGCELLKDLALSGF---KNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv---g~itlv-D~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
+|.+||+|.+|..++++|...|. ..|+++ |. ...|++ .+.+. .+.+.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~~----~~~~~--g~~~~---- 52 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARRD----VFQSL--GVKTA---- 52 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHHH----HHHHc--CCEEe----
Confidence 69999999999999999999985 245554 21 112322 22332 33321
Q ss_pred ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
....+..+++|+||.|+.+......+..+.
T Consensus 53 ---~~~~e~~~~aDvVil~v~~~~~~~vl~~l~ 82 (266)
T PLN02688 53 ---ASNTEVVKSSDVIILAVKPQVVKDVLTELR 82 (266)
T ss_pred ---CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence 123455678999999997665666555543
No 187
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.54 E-value=0.51 Score=43.41 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=24.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHh--CCCeEE-EEe
Q 020259 39 EYARILVVGAGGLGCELLKDLALS--GFKNLE-VID 71 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~--Gvg~it-lvD 71 (328)
+..+|.|||+|.+|..++++|... |+ +++ ++|
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~-el~aV~d 39 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGL-TLSAVAV 39 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCe-EEEEEEC
Confidence 356899999999999999999863 44 343 445
No 188
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.53 E-value=0.14 Score=51.40 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=29.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
-.+|.|||+|..|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999998 79999854
No 189
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=93.52 E-value=0.3 Score=46.58 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=47.7
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCCeEE-EEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVGA-GGLGCELLKDLALSGFKNLE-VIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~Gvg~it-lvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+|.|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+.+|.+.... ...+
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence 6999998 89999999999965333455 545332 12221 111223221100 0111
Q ss_pred CC-cchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 120 ED-KDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 120 ~~-~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+ ...++.+++|+|+.|+.+...+.+...+.
T Consensus 58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~ 89 (346)
T TIGR01850 58 EPIDEEEIAEDADVVFLALPHGVSAELAPELL 89 (346)
T ss_pred ecCCHHHhhcCCCEEEECCCchHHHHHHHHHH
Confidence 11 12344468999999998866666555543
No 190
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.49 E-value=0.46 Score=43.51 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSG--FKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~G--vg~itlvD~d 73 (328)
+|.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 6999999999999999998764 3334455543
No 191
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.43 E-value=0.24 Score=46.23 Aligned_cols=68 Identities=28% Similarity=0.371 Sum_probs=47.9
Q ss_pred EEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEEEEEeccc
Q 020259 45 VVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVPHFCRI 119 (328)
Q Consensus 45 iiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v~~~~~~~ 119 (328)
|||+|.+|+.+|-.|+..|+ ++|.|+|- .+.|++..+.-|+...+ .+++.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~------ 55 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIR------ 55 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEe------
Confidence 68999999999999999998 46999983 22345555666665432 23333
Q ss_pred CCcchhhhccCCEEEecCC
Q 020259 120 EDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d 138 (328)
..+.+-++++|+||.+..
T Consensus 56 -~~~~~~~~daDivVitag 73 (299)
T TIGR01771 56 -SGDYSDCKDADLVVITAG 73 (299)
T ss_pred -cCCHHHHCCCCEEEECCC
Confidence 124567899999987754
No 192
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.42 E-value=0.26 Score=46.34 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=48.1
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+|.|||+ |.+|+.+|-.|+..|+ .+|.|+|-. |++..+--|+...+.+++.....
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~-- 58 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLG-- 58 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecC--
Confidence 7999999 9999999999999897 579999954 11122222333323445543211
Q ss_pred CCcchhhhccCCEEEecCCC
Q 020259 120 EDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~ 139 (328)
++...+-++++|+||.+...
T Consensus 59 ~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 59 PEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CCchHHhcCCCCEEEEeCCC
Confidence 01124667899999776543
No 193
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.47 Score=43.00 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
| ++.+++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~-~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 F-QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred C-CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 6 5789999995 8999999999999998 6888764
No 194
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.33 E-value=0.13 Score=45.10 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=31.4
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| +.++|+|+|+|.+|..+++.|...|. ++++.|.+
T Consensus 26 l-~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 L-EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 6 58899999999999999999999998 78888754
No 195
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.29 E-value=0.52 Score=43.69 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.4
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.+||+|..|..+|+||..+|. .++++|.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCCh
Confidence 379999999999999999999997 799988554
No 196
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.27 E-value=0.55 Score=47.79 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.3
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+|||+|..|-..|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 47899999999999999999999998 699998554
No 197
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.24 E-value=0.34 Score=45.05 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=29.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 789988543
No 198
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.24 E-value=0.76 Score=45.30 Aligned_cols=31 Identities=35% Similarity=0.582 Sum_probs=27.1
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|+||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 689997 89999999999999996 78888743
No 199
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.23 E-value=0.76 Score=43.80 Aligned_cols=88 Identities=13% Similarity=0.171 Sum_probs=53.3
Q ss_pred cEEEEcCChHHHHHHHHHHHhCC-------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh--C----C
Q 020259 42 RILVVGAGGLGCELLKDLALSGF-------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER--V----S 108 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gv-------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l--n----p 108 (328)
+|.|||+|+.|+.+|..|+..|. .+++++..+. ++-.. ...+.+++. | |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~---~~~~~in~~~~n~~ylp 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGR---NLTEIINTTHENVKYLP 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCH---HHHHHHHhcCCCccccC
Confidence 58999999999999999999882 4788876422 11000 112222221 1 1
Q ss_pred CcEEEEEeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 109 GVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 109 ~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.++ .+..+ .....+.++++|+||.++.+...+..+.++.
T Consensus 63 gi~---Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~ 103 (342)
T TIGR03376 63 GIK---LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK 103 (342)
T ss_pred CCc---CCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence 211 01111 1223566789999999999877776666654
No 200
>PRK06046 alanine dehydrogenase; Validated
Probab=93.22 E-value=0.58 Score=44.24 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..+|.|||+|..|...+++|. ..++..+.++|.+. .+++.+++++++.. .+++....
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~-~~~v~~~~-- 186 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVV-GCDVTVAE-- 186 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhc-CceEEEeC--
Confidence 577999999999999999998 45788888887332 56777777776543 23443322
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
..++.+. +|+|+.|+.+
T Consensus 187 ---~~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 ---DIEEACD-CDILVTTTPS 203 (326)
T ss_pred ---CHHHHhh-CCEEEEecCC
Confidence 2234455 9999999876
No 201
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.22 E-value=0.5 Score=44.91 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=52.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
..+|.|+|+|.+|+.++..|+..| .++++..+.-....++..- ......+.. ..+.+.+.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~-~~~~~l~~~---------~~l~~~i~~------- 67 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNH-RNSRYLGND---------VVLSDTLRA------- 67 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcC-CCcccCCCC---------cccCCCeEE-------
Confidence 467999999999999999999998 4666654332211111110 000011100 001111111
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.....+.++++|+||.|+.+...+..+.++.
T Consensus 68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~ 98 (341)
T PRK12439 68 TTDFAEAANCADVVVMGVPSHGFRGVLTELA 98 (341)
T ss_pred ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1122345688999999999877777666665
No 202
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.10 E-value=0.42 Score=46.86 Aligned_cols=84 Identities=17% Similarity=0.240 Sum_probs=54.3
Q ss_pred cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 42 ~VliiG~gglG~-evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
||.|||+|+.-+ ++++.|+. .++++|+|+|-|. +..+.. =...+.+.+.+.++.++++..+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999865 67777776 5668999999664 222211 0223344455566677766643
Q ss_pred cccCCcchhhhccCCEEEec--CCCHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLG--LDSIEARS 144 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~--~d~~~~~~ 144 (328)
. ..+-++++|+||.+ ....+.|.
T Consensus 68 d-----~~~al~gadfVi~~~~vg~~~~r~ 92 (419)
T cd05296 68 D-----RREALEGADFVFTQIRVGGLEARA 92 (419)
T ss_pred C-----HHHHhCCCCEEEEEEeeCCcchhh
Confidence 2 46678899999888 33444443
No 203
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.09 E-value=0.31 Score=45.44 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|.+||+|.+|..++++|...|. +++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 59999999999999999999997 688888653
No 204
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.06 E-value=0.88 Score=41.70 Aligned_cols=78 Identities=27% Similarity=0.438 Sum_probs=59.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
+..+++|-| .+|+|.|+|+.|+.-|. ++.|+- + .+.|-+.+++.|+... .+++...+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~~ 63 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY-NLILVA---------------R----REDKLEALAKELEDKT-GVEVEVIPA 63 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEEC
Confidence 467899999 68999999999999998 788863 2 2358888999999877 788888888
Q ss_pred ccCCcc------hhhh---ccCCEEEecC
Q 020259 118 RIEDKD------ISFY---NDFNIIVLGL 137 (328)
Q Consensus 118 ~~~~~~------~~~~---~~~dvVi~~~ 137 (328)
++.+.+ .+.. -..|++|++.
T Consensus 64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 64 DLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred cCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 876532 1111 2578888763
No 205
>PLN00106 malate dehydrogenase
Probab=93.04 E-value=0.29 Score=46.26 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.0
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 020259 40 YARILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~ 74 (328)
..||+|+|+ |.+|+.++-.|+..|. ..|.|+|-+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 578999999 9999999999998888 5799999544
No 206
>PRK07574 formate dehydrogenase; Provisional
Probab=93.01 E-value=0.47 Score=45.97 Aligned_cols=82 Identities=23% Similarity=0.233 Sum_probs=54.4
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+.|...|+ ++..+|..... .+ ...+. .+ +.
T Consensus 188 ~~L-~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~-------------------~~----~~~~~--g~--~~ 238 (385)
T PRK07574 188 YDL-EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLP-------------------EE----VEQEL--GL--TY 238 (385)
T ss_pred eec-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCc-------------------hh----hHhhc--Cc--ee
Confidence 458 69999999999999999999999998 67777742210 00 00111 11 11
Q ss_pred EecccCCcchhhhccCCEEEecC-CCHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVA 150 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~-d~~~~~~~l~~~~ 150 (328)
....++.++.+|+|+.++ .+.+++..+++..
T Consensus 239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~ 270 (385)
T PRK07574 239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADV 270 (385)
T ss_pred -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence 112457788999997774 4667777777644
No 207
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.00 E-value=0.13 Score=46.74 Aligned_cols=39 Identities=28% Similarity=0.471 Sum_probs=33.4
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCc
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDR 74 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~----Gv------g~itlvD~d~ 74 (328)
++| ++.||+++|+|+.|.-+++.|+.+ |+ ++|.++|.+=
T Consensus 21 ~~l-~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKL-SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-G-GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCH-HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 458 799999999999999999999999 99 8999999764
No 208
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.00 E-value=0.35 Score=44.80 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=30.8
Q ss_pred HHHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVGAGG-LGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD~ 72 (328)
.| +.++|+|||.|. +|..+++.|...|. .+|+++.
T Consensus 155 ~l-~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s 190 (286)
T PRK14175 155 DL-EGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHS 190 (286)
T ss_pred CC-CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeC
Confidence 37 689999999998 99999999999996 7888863
No 209
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.87 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.5
Q ss_pred cCCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVGA-G-GLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG~-g-glG~evaknL~l~Gvg~itlvD 71 (328)
++.+++|.|. | |+|..+++.|+..|. ++.++|
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~ 49 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISD 49 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEe
Confidence 5788999996 5 799999999999998 577765
No 210
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.94 E-value=0.16 Score=43.72 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=28.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
+|.|||+|.+|..+|-.++++|. +++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 68999999999999999999998 8999997553
No 211
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.92 E-value=0.81 Score=43.64 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|+|+|.+|--.+..+.+.|.+.|.++|.+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 34799999999999999999999999999998443
No 212
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.92 E-value=0.93 Score=42.74 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=29.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|+|+|++|..++..+...|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 3678999999999999999999999988888764
No 213
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.90 E-value=0.17 Score=43.33 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=32.2
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..| .+++|.|+|+|.+|.++|+-|...|. ++..+|...
T Consensus 32 ~~l-~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~ 69 (178)
T PF02826_consen 32 REL-RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP 69 (178)
T ss_dssp S-S-TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred ccc-CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence 467 59999999999999999999999999 899888544
No 214
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.84 E-value=0.78 Score=44.73 Aligned_cols=40 Identities=35% Similarity=0.510 Sum_probs=32.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR 82 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r 82 (328)
+|.|||+|-+|..+|.+|+..|. +++.+|.+.-....+..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999998 79999976544444443
No 215
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.83 E-value=0.15 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=29.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|..|+.+|.+|+.+|+ .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 679999999999999999999998 799998543
No 216
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.81 E-value=0.15 Score=48.29 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=28.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCC
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFKN------LEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg~------itlvD~d 73 (328)
.||+|+|+ |.+|+.++..|+..|+-. |.|+|-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988854 9999854
No 217
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.81 E-value=0.43 Score=44.69 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=29.5
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.+|.|||+|-+|+.+|-.|+..|.++++++|-
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999995
No 218
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.80 E-value=0.67 Score=48.07 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|||+|..|-..|..|.+.|. +++++|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 47899999999999999999999998 59999864
No 219
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.78 E-value=0.17 Score=45.05 Aligned_cols=38 Identities=42% Similarity=0.438 Sum_probs=34.4
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.| +..+|+|.|.|.+|..+|+.|...|...+.+.|.+-
T Consensus 20 ~l-~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SL-EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred Cc-CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46 689999999999999999999999998999998654
No 220
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.78 E-value=1.1 Score=43.68 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=31.3
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 58899999999999999999999998 688888554
No 221
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.76 E-value=1.1 Score=40.06 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=27.7
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+.+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 46789998 57999999999999997 78888743
No 222
>PLN03139 formate dehydrogenase; Provisional
Probab=92.73 E-value=0.58 Score=45.32 Aligned_cols=82 Identities=26% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|..+|+.|...|+ ++..+|..... .+. ..+. .+ ..
T Consensus 195 ~~L-~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~-------------------~~~----~~~~--g~--~~ 245 (386)
T PLN03139 195 YDL-EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMD-------------------PEL----EKET--GA--KF 245 (386)
T ss_pred cCC-CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcc-------------------hhh----Hhhc--Cc--ee
Confidence 458 69999999999999999999999998 57777743210 000 0111 11 11
Q ss_pred EecccCCcchhhhccCCEEEec-CCCHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLG-LDSIEARSYINAVA 150 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~-~d~~~~~~~l~~~~ 150 (328)
.+.-++.++++|+|+.+ -.+.+++..++...
T Consensus 246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 277 (386)
T PLN03139 246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKER 277 (386)
T ss_pred -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHH
Confidence 11245677889999766 44667777777644
No 223
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.68 E-value=0.78 Score=45.23 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++|+|+|+|+.|..+|+.|...|. ++++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999998 789988543
No 224
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.67 E-value=0.34 Score=43.89 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=30.9
Q ss_pred HHHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 35 DDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 35 ~~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.++ ++.+++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 5 ~~~-~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 5 FDF-AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccC-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356 6889999985 8999999999999997 58887744
No 225
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.67 E-value=0.71 Score=42.94 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..+|+|+|+|++|...+..+...|...+.++|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 568999999999999998888899987877763
No 226
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.66 E-value=0.48 Score=44.82 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=61.3
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
.| ..++|.|||+|.+|+++++-|...|+ ++..+|+-.-.+ ++ ... . +
T Consensus 139 el-~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~~~~-----------------~~--------~~~-~--~--- 185 (324)
T COG0111 139 EL-AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPRE-----------------RA--------GVD-G--V--- 185 (324)
T ss_pred cc-cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCCchh-----------------hh--------ccc-c--c---
Confidence 57 59999999999999999999999999 688887422110 00 000 0 0
Q ss_pred ecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
.-.+.-+++++++|+|+..+. +.+++..++...... -+.+.-+|.++-.+
T Consensus 186 --~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~----------MK~gailIN~aRG~ 236 (324)
T COG0111 186 --VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAK----------MKPGAILINAARGG 236 (324)
T ss_pred --eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhh----------CCCCeEEEECCCcc
Confidence 001123567788998877644 567777777655332 13455667665433
No 227
>PRK00811 spermidine synthase; Provisional
Probab=92.64 E-value=0.96 Score=41.87 Aligned_cols=34 Identities=24% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+||++|+|+ |.-....|...++.+++.+|-|.
T Consensus 77 p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 77 PKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 56899999885 33333334446899999998554
No 228
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.60 E-value=0.41 Score=46.33 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=53.5
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcE-
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFKN------LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVN- 111 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg~------itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~- 111 (328)
.||.|||+ |.+|+.+|-.|+..|+-. |+|+|- |+.+.|++..+--|+... |...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 999999999999999943 555542 345566777776666654 4321
Q ss_pred EEEEecccCCcchhhhccCCEEEecCCC
Q 020259 112 IVPHFCRIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 112 v~~~~~~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
+. +...+.+-++++|+||.+...
T Consensus 108 v~-----i~~~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 108 VS-----IGIDPYEVFEDADWALLIGAK 130 (387)
T ss_pred eE-----EecCCHHHhCCCCEEEECCCC
Confidence 21 122356778999999887543
No 229
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.58 E-value=0.97 Score=43.72 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=58.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc-EEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV-NIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v-~v~~~~ 116 (328)
..++.|+|+|..+-.-++.++.. ++.++.++|.+ ..|+++.++++++..+++ ++...
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~- 214 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVV- 214 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEe-
Confidence 46899999999999999988763 58899998632 368888899998876654 35442
Q ss_pred cccCCcchhhhccCCEEEecCCC
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
+..++.+.++|+|++|+.+
T Consensus 215 ----~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 215 ----DSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred ----CCHHHHHcCCCEEEEccCC
Confidence 2356778999999998764
No 230
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.58 E-value=0.37 Score=43.21 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=32.8
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..| +..+|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 27 ~~l-~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGL-AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCc-cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 347 68999999999999999999999998666688864
No 231
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.54 E-value=0.75 Score=43.48 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..++.|||+|..|...++.|.. ..+.++.++| ....|++..++++++.. +++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~--- 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAA--- 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEe---
Confidence 4789999999999998777654 3456777765 33467888888887653 233332
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
....+.++++|+|+.|+.+
T Consensus 184 --~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 184 --TDPREAVEGCDILVTTTPS 202 (325)
T ss_pred --CCHHHHhccCCEEEEecCC
Confidence 2346677899999999865
No 232
>PRK05442 malate dehydrogenase; Provisional
Probab=92.54 E-value=0.49 Score=44.78 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=28.8
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 020259 40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~-gglG~evaknL~l~Gv-g-----~itlvD~ 72 (328)
-.||.|||+ |.+|+.+|-.|+..|+ + +|.|+|-
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 358999998 9999999999998888 4 6999883
No 233
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.49 E-value=1.1 Score=42.16 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=44.4
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
.++.++|.| .||+|.++|+.|+..|. ++.+++.+. .+.+.+++.+++.++..++.....
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence 367888888 58999999999999998 688876321 355666677776666556655554
Q ss_pred ccC
Q 020259 118 RIE 120 (328)
Q Consensus 118 ~~~ 120 (328)
++.
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 234
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=92.48 E-value=0.86 Score=41.53 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=24.9
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259 41 ARILVVGA-GGLGCELLKDLALS-GFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~-Gvg~itlvD~d 73 (328)
-+|.|+|+ |.+|..+++.+... ++.-..++|.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 37999999 99999999988763 55444556644
No 235
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.47 E-value=0.63 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=27.8
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|.+|..+++.|...|. .+.++|.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 369999999999999999999997 67777743
No 236
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.42 E-value=0.58 Score=41.48 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=29.4
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+++|.|+ |++|..+++.|...|. ++.++|.+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4788999996 9999999999999997 68888743
No 237
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.41 E-value=0.81 Score=41.71 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=49.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
+.+|.|||+|.+|+.+++.|...|. .++.+.|.+.-. .+ +..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~-- 47 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY-- 47 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE--
Confidence 4679999999999999999999884 236666543200 00 011
Q ss_pred cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
...+.+..+++|+||.|+.+...+..+.++.
T Consensus 48 ---~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 48 ---LQSNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ---eCChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1123445678999999988777776666654
No 238
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.38 E-value=0.25 Score=46.28 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=29.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|.|||+|-.|+-+|..++.+|+ .+++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 689999999999999999999777 79999965
No 239
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.37 E-value=0.84 Score=40.66 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=23.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhC---CCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSG---FKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~G---vg~itlvD~d~ 74 (328)
+|.+||||++|..+++.+- -| +.-+.+.|.+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~ 36 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDE 36 (255)
T ss_pred eEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCH
Confidence 6899999999999998665 44 55555556444
No 240
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.35 E-value=1 Score=42.45 Aligned_cols=88 Identities=23% Similarity=0.283 Sum_probs=54.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc-
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI- 119 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~- 119 (328)
.+|.|+|+|+-|+.+|+-|+..| ..++++..+.-...+++..- -+ .+.-|++. .+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-~N----------------~~yLp~i~---lp~~l~ 60 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-EN----------------PKYLPGIL---LPPNLK 60 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-cC----------------ccccCCcc---CCcccc
Confidence 57999999999999999999999 57888764432222221110 00 00112211 11111
Q ss_pred -CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259 120 -EDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (328)
Q Consensus 120 -~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~ 149 (328)
...-.+.++++|+|+.++.+...+..+..+
T Consensus 61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 61 ATTDLAEALDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred cccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 222356677899999999987777766665
No 241
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=92.33 E-value=0.38 Score=43.22 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=69.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE--Eecc-
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP--HFCR- 118 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~--~~~~- 118 (328)
++-+||+|-.|..++++|...|. .+..+|-+.-....+... |-.-+..+-+.++++-+- ++.+ .+..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~~~--------ga~~a~sl~el~~~L~~p-r~vWlMvPag~ 71 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELKDE--------GATGAASLDELVAKLSAP-RIVWLMVPAGD 71 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHHhc--------CCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence 47799999999999999999997 688888665444433332 211233345555555433 3322 2222
Q ss_pred cCCc----chhhhccCCEEEecCCC-HHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259 119 IEDK----DISFYNDFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 177 (328)
Q Consensus 119 ~~~~----~~~~~~~~dvVi~~~d~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G 177 (328)
+.+. -...++.-|+||+...+ .+....-.+.. .++++-|++++++|
T Consensus 72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l-------------~~kgi~flD~GTSG 122 (300)
T COG1023 72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL-------------AEKGIHFLDVGTSG 122 (300)
T ss_pred chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH-------------HhcCCeEEeccCCC
Confidence 3322 24567888999998543 33222222233 47899999999986
No 242
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.31 E-value=2.2 Score=43.37 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-------CCc
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-------SGV 110 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-------p~v 110 (328)
+...|+|.| .|++|..+++.|+..|. ++++++.+. .|++.+.+.+.++. +..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~ 138 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVE 138 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccC
Confidence 355688888 59999999999999997 676654321 23333333332211 112
Q ss_pred EEEEEecccCCcc--hhhhccCCEEEecCC
Q 020259 111 NIVPHFCRIEDKD--ISFYNDFNIIVLGLD 138 (328)
Q Consensus 111 ~v~~~~~~~~~~~--~~~~~~~dvVi~~~d 138 (328)
++..+..++.+.. ...+.+.|+||.+..
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 3455555555422 345788999988754
No 243
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.29 E-value=0.96 Score=45.29 Aligned_cols=43 Identities=26% Similarity=0.287 Sum_probs=34.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccc
Q 020259 39 EYARILVVGAGGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQ 83 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l--~Gvg~itlvD~d~v~~~nl~r~ 83 (328)
...+|+|||.|.-|.+.|..|+. .|. +++|+|.... +--+.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEee
Confidence 36789999999999999999997 576 8999997763 3444443
No 244
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.21 E-value=0.85 Score=41.15 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+ ++.+++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 8 ~-~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 L-DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred C-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 578899998 56899999999999998 88888754
No 245
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=92.21 E-value=0.13 Score=46.76 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=35.9
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC----------eEEEEeCCcc
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK----------NLEVIDMDRI 75 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg----------~itlvD~d~v 75 (328)
++| ++.+|+++|+|+.|.-+++.|..+|+. +|.++|..=+
T Consensus 21 ~~l-~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKI-SEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CCh-hhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 568 699999999999999999999999997 8999997643
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.20 E-value=1.5 Score=37.03 Aligned_cols=66 Identities=29% Similarity=0.318 Sum_probs=44.8
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 43 VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
|+|+|+ |.+|..+++.|...|. +++.+= +. ..|.+. .+.++ ....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~---------------R~----~~~~~~--------~~~~~--~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALV---------------RS----PSKAED--------SPGVE--IIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEE---------------SS----GGGHHH--------CTTEE--EEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEe---------------cC----chhccc--------ccccc--cceeeehh
Confidence 789996 9999999999999994 677742 11 123322 45554 44455544
Q ss_pred cc--hhhhccCCEEEecCC
Q 020259 122 KD--ISFYNDFNIIVLGLD 138 (328)
Q Consensus 122 ~~--~~~~~~~dvVi~~~d 138 (328)
.. .+.++++|.||.+..
T Consensus 51 ~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp HHHHHHHHTTSSEEEECCH
T ss_pred hhhhhhhhhhcchhhhhhh
Confidence 32 556789999999865
No 247
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.9 Score=40.79 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=26.6
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46899985 9999999999999996 7888764
No 248
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.11 E-value=1.2 Score=42.14 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=29.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|+|+|++|..++..+...|+ ++++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 46899999999999999999999998 6777764
No 249
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.88 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=27.9
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++++++|.| .||+|.++++.|+..|. ++.+++.
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 467899998 58999999999999998 6777763
No 250
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.03 E-value=1.8 Score=41.16 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHH
Q 020259 40 YARILVVGAGGLGCELLKDLAL 61 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l 61 (328)
.-+|.|+|+|.+|+.+++.|..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 3579999999999999999876
No 251
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.93 E-value=0.23 Score=47.21 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=31.5
Q ss_pred HHHcCCcEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCC
Q 020259 36 DLQEYARILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMD 73 (328)
Q Consensus 36 ~Lr~~~~VliiG~-gglG~evaknL~l-~Gvg~itlvD~d 73 (328)
.| ++++|+|+|+ |.+|+++++.|.. .|+.++++++.+
T Consensus 152 ~l-~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~ 190 (340)
T PRK14982 152 DL-SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ 190 (340)
T ss_pred Cc-CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence 36 5799999998 8999999999985 588999998643
No 252
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.91 E-value=0.72 Score=40.88 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.2
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+|+|+| .|++|.++++.|+..|. ++++++.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~ 38 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRN 38 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 478899998 58999999999999998 48888754
No 253
>PLN02427 UDP-apiose/xylose synthase
Probab=91.90 E-value=1.4 Score=42.32 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=29.4
Q ss_pred HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+++ +..+|+|.| .|-+|+.+++.|+..|--+++.+|.
T Consensus 10 ~~~-~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPI-KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred Ccc-cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 456 567899999 6999999999999885236777774
No 254
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.84 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=28.1
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD 71 (328)
+ ++.+++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 7 ~-~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~ 40 (253)
T PRK05867 7 L-HGKRALITGASTGIGKRVALAYVEAGA-QVAIAA 40 (253)
T ss_pred C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 5 5788999985 8999999999999998 677765
No 255
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=91.79 E-value=0.97 Score=41.36 Aligned_cols=101 Identities=12% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEE---EeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEV---IDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itl---vD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
..||.|||||.+|..+++.|..-+...+.+ .|.+. ...+.+ . +..++-.-.+.+....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----~~~~~~-~-----~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----DLPPAL-A-----GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----HHHHHh-h-----ccCcccCCHHHHhhcCCCEEEECCC
Confidence 468999999999999999987543333332 23221 001110 0 1111111133333445776666533
Q ss_pred cc-cCCcchhhhc-cCCEEEecCC---CHHHHHHHHHHH
Q 020259 117 CR-IEDKDISFYN-DFNIIVLGLD---SIEARSYINAVA 150 (328)
Q Consensus 117 ~~-~~~~~~~~~~-~~dvVi~~~d---~~~~~~~l~~~~ 150 (328)
.. +.+..+..++ +.|+++.++. +......+.+.+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A 110 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAA 110 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHH
Confidence 22 2233455565 7888876633 445666666676
No 256
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=91.79 E-value=0.32 Score=47.08 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCCCCccHHHHHHHH-cCCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccC
Q 020259 24 GPTFEPGTELRDDLQ-EYARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSN 79 (328)
Q Consensus 24 rq~~l~G~~~q~~Lr-~~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~n 79 (328)
|--++|...--+.+. +...|+|||+|-+|+.+|..|++. |..+++|+|.+.+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ga 70 (407)
T TIGR01373 13 RGHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGN 70 (407)
T ss_pred ccCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcc
Confidence 444556554444331 245799999999999999999985 87789999988765433
No 257
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.78 E-value=1.2 Score=39.84 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=28.4
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .|++|..+++.|+..|. ++++++.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 578899998 59999999999999998 6777653
No 258
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=91.77 E-value=0.77 Score=43.08 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=28.9
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259 42 RILVVGA-GGLGCELLKDLALSGFK-NLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~Gvg-~itlvD~d 73 (328)
+|.|+|+ |.+|+.++..|+..|+. +++++|.+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 7999998 99999999999999984 79999963
No 259
>PRK09186 flagellin modification protein A; Provisional
Probab=91.74 E-value=1 Score=40.07 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++++|+|.| .|++|.++++.|+..|. ++.+++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467899998 58999999999999997 577665
No 260
>PRK05866 short chain dehydrogenase; Provisional
Probab=91.72 E-value=1 Score=41.57 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.7
Q ss_pred HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..+ ++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 36 ~~~-~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDL-TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 346 578899998 59999999999999997 6777763
No 261
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.71 E-value=0.48 Score=44.81 Aligned_cols=81 Identities=26% Similarity=0.275 Sum_probs=52.7
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV 113 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~ 113 (328)
..+ ..+++.|+|.|.+|..+|+.+. |+| +|...|.... +..+ .+.+ .
T Consensus 142 ~~l-~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~------~~~~----~- 189 (324)
T COG1052 142 FDL-RGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAE------KELG----A- 189 (324)
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHH------hhcC----c-
Confidence 457 5999999999999999999999 554 5666553321 0000 0000 0
Q ss_pred EEecccCCcchhhhccCCEEEe-cCCCHHHHHHHHHHHHH
Q 020259 114 PHFCRIEDKDISFYNDFNIIVL-GLDSIEARSYINAVACS 152 (328)
Q Consensus 114 ~~~~~~~~~~~~~~~~~dvVi~-~~d~~~~~~~l~~~~~~ 152 (328)
..+. .++.++++|+|+. |-.+.+++..+|.....
T Consensus 190 ---~y~~--l~ell~~sDii~l~~Plt~~T~hLin~~~l~ 224 (324)
T COG1052 190 ---RYVD--LDELLAESDIISLHCPLTPETRHLINAEELA 224 (324)
T ss_pred ---eecc--HHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence 1111 4677889999854 55678889888876643
No 262
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.70 E-value=1.2 Score=44.20 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=33.4
Q ss_pred HHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 34 RDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 34 q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
-..+ ..++|+|+|.|..|..+|+.|...|. .+++.|...
T Consensus 9 ~~~~-~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 9 KKFI-KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhh-cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 3456 47899999999999999999999997 799988543
No 263
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.67 E-value=0.81 Score=42.56 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=28.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|.+||+|-+|..++++|...|. +++++|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 59999999999999999999997 78888854
No 264
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.63 E-value=1.3 Score=45.76 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=54.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
...+|+|||.|..|-..|..|.+.|. +++++|....-..-+ +. -+....+-+...+.-.+.+.++ ++++.....-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l-~~-gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~~v 383 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGML-TF-GIPPFKLDKTVLSQRREIFTAM--GIDFHLNCEI 383 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCee-ec-cCCcccCCHHHHHHHHHHHHHC--CeEEEcCCcc
Confidence 37899999999999999999999998 699998554211111 10 1111112222233334455554 3444332211
Q ss_pred cCC-cchhhhccCCEEEecCCC
Q 020259 119 IED-KDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~-~~~~~~~~~dvVi~~~d~ 139 (328)
-.+ ...+....||.||.++..
T Consensus 384 ~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 384 GRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred CCcCCHHHHHhcCCEEEEeCCC
Confidence 011 112345679999888765
No 265
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.61 E-value=1.4 Score=43.43 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+.+|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 46789999999999999999999997 788888543
No 266
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.58 E-value=1.6 Score=42.74 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~ 76 (328)
-.+|.|||+|-+|..+|.+|+..|. +++.+|.+.-.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~ 38 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHA 38 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHH
Confidence 3679999999999999999999996 79999965543
No 267
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.49 E-value=0.29 Score=45.50 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.| ..++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l-~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TI-HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CC-CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 46 57899999999999999999999997 8998874
No 268
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.48 E-value=0.83 Score=43.46 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=47.9
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~ 120 (328)
+|+|+| .|.+|.|+++.|...|...+.|+= +.+..+.|+.=. . ....+... ++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~~~--~~- 54 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELEVN--EA- 54 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEEEE--eC-
Confidence 589999 889999999999886665443321 123333343211 0 11222221 11
Q ss_pred CcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 121 DKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+.++++|+|+.|+.+...+.+.....
T Consensus 55 --~~~~~~~~D~v~~a~g~~~s~~~a~~~~ 82 (339)
T TIGR01296 55 --KIESFEGIDIALFSAGGSVSKEFAPKAA 82 (339)
T ss_pred --ChHHhcCCCEEEECCCHHHHHHHHHHHH
Confidence 1233588999999999877766655543
No 269
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.47 E-value=0.28 Score=48.02 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=29.4
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..+|+|||+|-+|+++|..|++.|+ +++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEc
Confidence 4689999999999999999999998 7999984
No 270
>PLN02253 xanthoxin dehydrogenase
Probab=91.44 E-value=1.2 Score=40.55 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=29.5
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+| ++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 15 ~l-~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RL-LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred cc-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46 577899998 78999999999999997 6888764
No 271
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.42 E-value=0.29 Score=45.27 Aligned_cols=33 Identities=33% Similarity=0.655 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|.+|..+|.+|+.+|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999997 799998654
No 272
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.42 E-value=0.65 Score=45.76 Aligned_cols=76 Identities=18% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHh-------CC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CC
Q 020259 40 YARILVVGA-GGLGCELLKDLALS-------GF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SG 109 (328)
Q Consensus 40 ~~~VliiG~-gglG~evaknL~l~-------Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~ 109 (328)
-.+|.|||+ |.+|+.+|-.|+.. |+ .+|.++| +.+.|++..+--|+... |.
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~ 160 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL 160 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence 468999999 99999999999988 44 2566655 33345666666666543 33
Q ss_pred c-EEEEEecccCCcchhhhccCCEEEecCCC
Q 020259 110 V-NIVPHFCRIEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 110 v-~v~~~~~~~~~~~~~~~~~~dvVi~~~d~ 139 (328)
. ++.. ...+.+-++++|+||.+...
T Consensus 161 ~~~v~i-----~~~~ye~~kdaDiVVitAG~ 186 (444)
T PLN00112 161 LREVSI-----GIDPYEVFQDAEWALLIGAK 186 (444)
T ss_pred cCceEE-----ecCCHHHhCcCCEEEECCCC
Confidence 2 1221 12356778999999887553
No 273
>PRK06194 hypothetical protein; Provisional
Probab=91.37 E-value=1.6 Score=39.81 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.3
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467899998 68999999999999997 6888874
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.36 E-value=3 Score=39.62 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=29.8
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD 71 (328)
.++...+|+|+|+||+|.-.++....+| -+++.+|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 3434788999999999999999999999 5888876
No 275
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.32 E-value=0.32 Score=45.09 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=30.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
-.+|.|||+|.+|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 79999854
No 276
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.30 E-value=0.8 Score=44.77 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+.+...|. ++..+|.... .. . ..+ ..
T Consensus 147 ~~L-~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~~-------------~~---------------~-~~~--~~ 193 (409)
T PRK11790 147 FEV-RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIEDK-------------LP---------------L-GNA--RQ 193 (409)
T ss_pred ccC-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCcc-------------cc---------------c-CCc--ee
Confidence 458 69999999999999999999999998 7878774210 00 0 001 00
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVAC 151 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~ 151 (328)
...-+++++.+|+|+.++. +.+++..+|+...
T Consensus 194 -----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l 226 (409)
T PRK11790 194 -----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEEL 226 (409)
T ss_pred -----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHH
Confidence 1124677889999977644 5678888876553
No 277
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.27 E-value=0.5 Score=44.11 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHcCCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVGAG-GLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG~g-glG~evaknL~l~Gvg~itlvD~ 72 (328)
.+ ..++|.|||.| -+|..++.+|...|. .+++++.
T Consensus 156 ~l-~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~ 191 (301)
T PRK14194 156 DL-TGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHS 191 (301)
T ss_pred CC-CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECC
Confidence 46 58999999996 999999999999997 8998863
No 278
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.26 E-value=1.1 Score=39.63 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=28.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 578899998 68999999999999987 6777663
No 279
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.15 E-value=1.1 Score=41.99 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=28.5
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhC-CCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSG-FKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~G-vg~itlvD~d 73 (328)
++.+|+|.| .|++|+.+++.|+..| ..+++++|.+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 467899998 5899999999999987 3478887743
No 280
>PLN02240 UDP-glucose 4-epimerase
Probab=91.08 E-value=2.5 Score=39.68 Aligned_cols=32 Identities=41% Similarity=0.603 Sum_probs=28.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++.+|+|.| .|.+|+.+++.|+..|. +++++|
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 468899998 58999999999999996 788876
No 281
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.04 E-value=1.8 Score=41.21 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=22.5
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEE
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFKNLEV 69 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg~itl 69 (328)
.+|+|+|+ |.+|.++++.|....--+++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~ 32 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVA 32 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEE
Confidence 58999997 889999999998763334444
No 282
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.02 E-value=2.1 Score=42.80 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=56.4
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hCCCcEEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RVSGVNIVPHF 116 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--lnp~v~v~~~~ 116 (328)
..+|+|||.|..|.++|..|. ..|+ +++|+|....-- =+.|. -..++. ++.+.+.+.+.+ .++.++... +
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~-GVaPdh---~~~k~v~~~f~~~~~~~~v~f~g-n 111 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRY-GVAPDH---IHVKNTYKTFDPVFLSPNYRFFG-N 111 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEE-eCCCCC---ccHHHHHHHHHHHHhhCCeEEEe-e
Confidence 568999999999999999765 5676 699999766543 23332 133333 233333344332 235555432 2
Q ss_pred cccCC--cchhhhccCCEEEecCCC
Q 020259 117 CRIED--KDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 117 ~~~~~--~~~~~~~~~dvVi~~~d~ 139 (328)
-.+.. ..+++...||.||.++..
T Consensus 112 v~VG~Dvt~eeL~~~YDAVIlAtGA 136 (506)
T PTZ00188 112 VHVGVDLKMEELRNHYNCVIFCCGA 136 (506)
T ss_pred eEecCccCHHHHHhcCCEEEEEcCC
Confidence 22222 135556789999988775
No 283
>PRK06172 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.93 Score=40.43 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=28.3
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 578899998 58999999999999997 6878764
No 284
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.97 E-value=1.5 Score=38.81 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=27.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++.+++|.| .|++|.++++.|+..|. ++.+++
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~ 38 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFND 38 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEe
Confidence 478899998 58999999999999997 566664
No 285
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=90.94 E-value=0.34 Score=46.10 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 5679999999999999999999997 7999998754
No 286
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.94 E-value=3.3 Score=39.04 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=25.0
Q ss_pred cEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259 42 RILVVGA-GGLGCELLKDLALS-GFKNLEVIDM 72 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~-Gvg~itlvD~ 72 (328)
+|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r 34 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDW-EVYGMDM 34 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeC
Confidence 6999996 99999999999976 44 7777763
No 287
>PRK06138 short chain dehydrogenase; Provisional
Probab=90.93 E-value=1.4 Score=39.02 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=27.9
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++++++|.| .|++|.++++.|+..|. ++.+++.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 477899998 58999999999999996 6777653
No 288
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=90.93 E-value=1.9 Score=46.52 Aligned_cols=40 Identities=35% Similarity=0.349 Sum_probs=34.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN 79 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n 79 (328)
...+|+|||+|..|-++|..|++.|. ++|++|...++.-+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence 47899999999999999999999998 79999987654333
No 289
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=90.91 E-value=1.4 Score=42.01 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=48.9
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
...+|.|+| .|.+|.|+++.|...+.- ++..+. .....|+.=.. ....+..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~----------~~~~~~v- 59 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF----------EGRDYTV- 59 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee----------cCceeEE-
Confidence 367899999 778999999999986653 444442 22233332111 1111111
Q ss_pred ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+...+.++++|+||.|+.+-..+.+..++.
T Consensus 60 ----~~~~~~~~~~~D~vf~a~p~~~s~~~~~~~~ 90 (344)
T PLN02383 60 ----EELTEDSFDGVDIALFSAGGSISKKFGPIAV 90 (344)
T ss_pred ----EeCCHHHHcCCCEEEECCCcHHHHHHHHHHH
Confidence 1112233578999999988876766666543
No 290
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.90 E-value=1.3 Score=45.93 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|...|..|++.|. +++++|...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 5789999999999999999999998 799998653
No 291
>PLN02858 fructose-bisphosphate aldolase
Probab=90.89 E-value=1.3 Score=49.94 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.2
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+..+|.+||+|.+|..+|+||+..|. .++++|.+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~ 36 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGF-KVQAFEIS 36 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 46789999999999999999999997 78888744
No 292
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.89 E-value=2 Score=40.65 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=57.5
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH-HHHHHHHhhCCCcEEEEE
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE-VAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~-a~~~~l~~lnp~v~v~~~ 115 (328)
.+...+|.|+|+||+|-.++.-+..+|.++|.-+|-..- .-.+.+.|-.+ +.=.+|-. -+.+.++++.+
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT--~~vn~~~~~~vv~~i~~~T~------- 252 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGAT--HFVNPKEVDDVVEAIVELTD------- 252 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCc--eeecchhhhhHHHHHHHhcC-------
Confidence 335788999999999999999999999999999984331 11222222111 11001111 13333333332
Q ss_pred ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+.|.+|+|+.+.+..+.--+.+
T Consensus 253 ------------gG~d~~~e~~G~~~~~~~al~~~ 275 (366)
T COG1062 253 ------------GGADYAFECVGNVEVMRQALEAT 275 (366)
T ss_pred ------------CCCCEEEEccCCHHHHHHHHHHH
Confidence 16899999999988665544455
No 293
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.85 E-value=1.1 Score=39.95 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=29.2
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++|+|.| .|++|.++++.|+..|. ++.+.|.+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~ 43 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD 43 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 578999998 59999999999999998 68887643
No 294
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.85 E-value=1.2 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=26.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVI 70 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlv 70 (328)
++.+++|+| .|++|.++++.|+..|.. +.++
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 467899998 589999999999999984 5554
No 295
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.82 E-value=0.45 Score=49.91 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|..|+.||..++.+|. .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 899999553
No 296
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=90.78 E-value=1.3 Score=41.65 Aligned_cols=74 Identities=27% Similarity=0.249 Sum_probs=49.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..++.|+|+|..|-.-++.+.. .++.+|.++|.+ ..|++..++++++ . .+.+....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~-~-~~~v~~~~-- 184 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS-------------------PERAEAFAARLRD-L-GVPVVAVD-- 184 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS-------------------HHHHHHHHHHHHC-C-CTCEEEES--
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC-------------------hhHHHHHHHhhcc-c-cccceecc--
Confidence 4679999999999999888764 679999998722 2588999999998 3 66666542
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
..++.++++|+|++|+.+
T Consensus 185 ---~~~~av~~aDii~taT~s 202 (313)
T PF02423_consen 185 ---SAEEAVRGADIIVTATPS 202 (313)
T ss_dssp ---SHHHHHTTSSEEEE----
T ss_pred ---chhhhcccCCEEEEccCC
Confidence 246778999999999775
No 297
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.74 E-value=1.9 Score=33.18 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=49.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+.+|+-+|||. |......+.+..-.+++-+|.+. .-.+.+.+++.+....-+++.+..++
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 67899999885 44444433333445799998433 23445556664545556677777777
Q ss_pred CCcchhhhccCCEEEecC
Q 020259 120 EDKDISFYNDFNIIVLGL 137 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~ 137 (328)
....+...+||+|+...
T Consensus 62 -~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 -EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp -HGGTTTSSCEEEEEECS
T ss_pred -ccCcccCCCCCEEEECC
Confidence 44566667899998876
No 298
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=90.71 E-value=1.4 Score=47.70 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=55.2
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC--CCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF--RMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~--~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
...+|+|||+|..|-..|..|++.|. ++||+|... .++-..-| ..-.+.+.-.+.-.+.++++ .+++....
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n~ 377 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKNF 377 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEeE
Confidence 47899999999999999999999998 799998542 22222112 11112222233334455554 45544322
Q ss_pred cccCCcc-hhhhc-cCCEEEecCCC
Q 020259 117 CRIEDKD-ISFYN-DFNIIVLGLDS 139 (328)
Q Consensus 117 ~~~~~~~-~~~~~-~~dvVi~~~d~ 139 (328)
.-=.+.. .+..+ +||.||.|+..
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 1101112 33334 69999888765
No 299
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.69 E-value=0.39 Score=44.57 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++|.|||+|-+|+.+|.+|+.+|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 679999999999999999999996 899998543
No 300
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=90.69 E-value=0.42 Score=45.58 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=36.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLN 81 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~ 81 (328)
+..+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~ 44 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAG 44 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchh
Confidence 46889999999999999999999999 9999998887554433
No 301
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.66 E-value=1.1 Score=39.51 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=29.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467899998 77999999999999998 78888744
No 302
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.66 E-value=0.53 Score=42.44 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=34.7
Q ss_pred HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
-.|.+| +.++++|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus 7 ~~~~~l-~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 7 MAQSTW-QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hhHHhh-CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 468999 789999998 58999999999999997 677777543
No 303
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.62 E-value=1.4 Score=43.43 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++..|+|+|+|+.|-.+|+.|...|. +++..|..
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 57889999999999999999999998 78998843
No 304
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.62 E-value=1.4 Score=41.57 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+ ++.+|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 5 l-~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 5 L-HGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred C-CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 5 5788999995 8999999999999998 6777763
No 305
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.60 E-value=1.9 Score=38.66 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=29.9
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| ++.+++|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus 5 ~-~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 L-AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred C-CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5 5788999986 7999999999999998 78888744
No 306
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.58 E-value=2.1 Score=38.77 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=28.8
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 6 l-~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 L-SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred C-CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 467788888 47999999999999997 68887743
No 307
>PRK06940 short chain dehydrogenase; Provisional
Probab=90.56 E-value=1.5 Score=39.93 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=26.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.++|.|+||+|.++++.|. .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 567888899999999999996 785 7888764
No 308
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.53 E-value=1.7 Score=40.88 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=31.4
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..++|||+|+|.+|--...-+-.+|.++|.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 5799999999999999999999999999999983
No 309
>PRK04457 spermidine synthase; Provisional
Probab=90.50 E-value=1.5 Score=40.08 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCCCccchhhhh-hhhcCCCCCCCCCCccHHHHHHH---H---cCCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCc
Q 020259 3 DTAPSRSRDLDK-LLLRAGNLVGPTFEPGTELRDDL---Q---EYARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDR 74 (328)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~rq~~l~G~~~q~~L---r---~~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~ 74 (328)
|..+.||.+++. .....-.++++..++-.-.|.-+ . ...+|+.||+|+ |+ +++.|. ..+-.+++.+|-|.
T Consensus 23 e~~~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~-G~-l~~~l~~~~p~~~v~~VEidp 100 (262)
T PRK04457 23 EEGGVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGG-GS-LAKFIYTYLPDTRQTAVEINP 100 (262)
T ss_pred ecCCEEEEEECCCcceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCH-hH-HHHHHHHhCCCCeEEEEECCH
Confidence 567889999987 34445556667776643333221 0 146899999985 44 555444 34456899998554
No 310
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.48 E-value=0.41 Score=44.31 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=30.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 799999654
No 311
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.48 E-value=1.7 Score=39.54 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=29.2
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|+|||+|..|.+.|..|.+.|. +++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC
Confidence 69999999999999999999998 699999654
No 312
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.39 E-value=1.8 Score=38.20 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=27.8
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++.+++|.| .|++|.++++.|+..|. ++++++
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~ 37 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLD 37 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEc
Confidence 567899998 79999999999999998 577776
No 313
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.38 E-value=1.8 Score=43.08 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=30.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|||.|..|..+|..|.+.|. +++++|..
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 5789999999999999999999998 69999865
No 314
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.37 E-value=2.7 Score=37.19 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=27.1
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++|+|.| .|++|.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4688888 79999999999999997 68887744
No 315
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.35 E-value=1 Score=42.06 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.3
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
.+ +.++|+||| .+-+|..+|.+|...|. .+++++
T Consensus 155 ~~-~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~ 189 (296)
T PRK14188 155 DL-SGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH 189 (296)
T ss_pred CC-CCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence 36 689999999 99999999999999997 788885
No 316
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.35 E-value=1.9 Score=40.46 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=57.1
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC--CccCcc-CCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM--DRIEVS-NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV 113 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~--d~v~~~-nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~ 113 (328)
.+..+.|.|+|+|++|..++.---.+|.++|.=+|- |+++.. -++---++++.|.-+ -+.+.|.++-
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~----~i~evi~EmT------ 259 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKK----PIQEVIIEMT------ 259 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccc----cHHHHHHHHh------
Confidence 336789999999999999999999999999999982 121111 111111112211111 2223333321
Q ss_pred EEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 114 PHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 114 ~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
-.++|.-+.|+.+.++.+.--+.|
T Consensus 260 -------------dgGvDysfEc~G~~~~m~~al~s~ 283 (375)
T KOG0022|consen 260 -------------DGGVDYSFECIGNVSTMRAALESC 283 (375)
T ss_pred -------------cCCceEEEEecCCHHHHHHHHHHh
Confidence 147899999999998877665555
No 317
>PRK07589 ornithine cyclodeaminase; Validated
Probab=90.34 E-value=1.8 Score=41.30 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..+++|||+|..+..-++.+. ...+.++.+++ ....|+++.++++++. .+++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~-------------------r~~~~a~~~~~~~~~~--~~~v~~~--- 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYD-------------------IDPAATAKLARNLAGP--GLRIVAC--- 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe-------------------CCHHHHHHHHHHHHhc--CCcEEEe---
Confidence 477999999999988876554 44678888875 2235788888888762 4455442
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
+..++.++++|+|++|+.+
T Consensus 185 --~~~~~av~~ADIIvtaT~S 203 (346)
T PRK07589 185 --RSVAEAVEGADIITTVTAD 203 (346)
T ss_pred --CCHHHHHhcCCEEEEecCC
Confidence 2356778999999999865
No 318
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=90.33 E-value=0.41 Score=46.34 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=30.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++|+|||.|-+|+.+|..|+..|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999997 799999876
No 319
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.32 E-value=1.1 Score=44.07 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=64.7
Q ss_pred cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHH-HHhhCCCcEEEEE
Q 020259 42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKR-VMERVSGVNIVPH 115 (328)
Q Consensus 42 ~VliiG~gglG~-evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~-l~~lnp~v~v~~~ 115 (328)
||.|||+|+.=+ ++++.|+. .++++|+|+|-|. ..+. .+..++++ +++.++.++|+..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence 799999998632 56666653 4567999998544 1111 12333333 3445666676664
Q ss_pred ecccCCcchhhhccCCEEEec--CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259 116 FCRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH 181 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~--~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~ 181 (328)
+. ..+-++++|.||++ +...+.|..-.++. .++|+ +-..+.|..|.
T Consensus 66 td-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip-------------~kyGi--~gqET~G~GG~ 113 (437)
T cd05298 66 TD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIP-------------LKHGV--VGQETCGPGGF 113 (437)
T ss_pred CC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHH-------------HHcCc--ceecCccHHHH
Confidence 32 46778999999988 55566666555565 56675 44466666664
No 320
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.31 E-value=1.5 Score=41.53 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=47.5
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCe--EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 41 ARILVVG-AGGLGCELLKDLALSGFKN--LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 41 ~~VliiG-~gglG~evaknL~l~Gvg~--itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
.+|+|+| .|.+|.++++.|...|... +..+ .+..+.|+.=. ++ ..++...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLL---------------ASARSAGKELS---------FK-GKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEE---------------EccccCCCeee---------eC-CceeEEe--
Confidence 4799999 7889999999999866643 3333 12222333110 11 1222221
Q ss_pred ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
++ ....++++|+||.|+.....+.+...+.
T Consensus 55 d~---~~~~~~~vDvVf~A~g~g~s~~~~~~~~ 84 (334)
T PRK14874 55 DL---TTFDFSGVDIALFSAGGSVSKKYAPKAA 84 (334)
T ss_pred eC---CHHHHcCCCEEEECCChHHHHHHHHHHH
Confidence 11 1223478999999998877776666554
No 321
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.13 E-value=0.99 Score=44.51 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=32.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~ 76 (328)
.+.+|+|+|+|..|..+++.|...|. .+++.|.....
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence 37899999999999999999999995 89999966544
No 322
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.09 E-value=1.8 Score=38.32 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=28.9
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5778999995 9999999999999996 68877643
No 323
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.06 E-value=1.8 Score=38.56 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=30.0
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| ++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 6 l-~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 6 L-TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred c-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 578899998 88999999999999997 78888753
No 324
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.06 E-value=2 Score=42.70 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=30.4
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|||.|..|.+.|..|.+.|. +++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence 36789999999999999999999998 58998865
No 325
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.00 E-value=1.7 Score=38.96 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.7
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
| ++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 13 l-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~ 47 (258)
T PRK06935 13 L-DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTH 47 (258)
T ss_pred C-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6 578899998 68999999999999998 5777654
No 326
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.00 E-value=1 Score=41.70 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=27.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|+|+|.+|..+++.|...|.. ..+++.|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d 35 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRD 35 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCe-EEEEeec
Confidence 56899999999999999999999984 5555533
No 327
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=89.95 E-value=1.9 Score=39.44 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.5
Q ss_pred cEEEEcCChHHHHHHHHHHHh
Q 020259 42 RILVVGAGGLGCELLKDLALS 62 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~ 62 (328)
||.|||||.+|..+++.|...
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhC
Confidence 799999999999999999875
No 328
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=89.94 E-value=1.8 Score=33.81 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.1
Q ss_pred cEEEEcCChHHHHHHHHHHHhC
Q 020259 42 RILVVGAGGLGCELLKDLALSG 63 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~G 63 (328)
||.|||+|..|...+..+...+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~ 23 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS 23 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT
T ss_pred EEEEECCcHHHHHHHHHHHhcC
Confidence 6999999999999999999883
No 329
>PRK06523 short chain dehydrogenase; Provisional
Probab=89.94 E-value=1.1 Score=40.07 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=31.4
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++ ++.+|+|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus 6 ~~-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 EL-AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CC-CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 36 578899998 58999999999999998 688888654
No 330
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.92 E-value=2.5 Score=40.10 Aligned_cols=36 Identities=25% Similarity=0.523 Sum_probs=30.1
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++...+|+|.|+|++|..++......|+.++..+|.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 334678999999999999999888899977887764
No 331
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.91 E-value=0.45 Score=45.15 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=60.7
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+.|...|. ++..+|...- ... . .+. .+.
T Consensus 146 ~~L-~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~--------------------~~~-~---~~~--~~~--- 194 (333)
T PRK13243 146 YDV-YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK--------------------PEA-E---KEL--GAE--- 194 (333)
T ss_pred cCC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC--------------------hhh-H---HHc--CCE---
Confidence 358 69999999999999999999999997 6778774210 000 0 011 111
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 176 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~ 176 (328)
. ....+.++++|+|+.++. +.+++..++...... -+.+.-+|+++..
T Consensus 195 ----~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~----------mk~ga~lIN~aRg 242 (333)
T PRK13243 195 ----Y-RPLEELLRESDFVSLHVPLTKETYHMINEERLKL----------MKPTAILVNTARG 242 (333)
T ss_pred ----e-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc----------CCCCeEEEECcCc
Confidence 0 123567889999988754 556777776543221 2345556666543
No 332
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.90 E-value=7.7 Score=30.03 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=47.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
+.+|+-+|||. |.-....+...+-++++-+|.. ....+.+.+.++... .-+++....+.
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~-~~~~~~~~~~~ 78 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIERN-------------------PEALRLIERNARRFG-VSNIVIVEGDA 78 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCC-------------------HHHHHHHHHHHHHhC-CCceEEEeccc
Confidence 56899999976 6655555544444788888833 234445555555432 11334443333
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..........||+|+...........+....
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~ 109 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSGGLLQEILEAIW 109 (124)
T ss_pred cccChhhcCCCCEEEECCcchhHHHHHHHHH
Confidence 2211222358999988653323333344333
No 333
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.88 E-value=1.6 Score=38.81 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=28.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .|++|.++++.|...|. ++.+++.
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 467899998 69999999999999997 6777653
No 334
>PLN02928 oxidoreductase family protein
Probab=89.85 E-value=0.27 Score=47.00 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.1
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..| ..++|.|||+|.+|.++|+.|...|. +++.+|.
T Consensus 155 ~~l-~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 155 DTL-FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 358 69999999999999999999999998 7888875
No 335
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.84 E-value=0.53 Score=43.86 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=31.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEV 77 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~ 77 (328)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999999 999999985543
No 336
>PRK06914 short chain dehydrogenase; Provisional
Probab=89.84 E-value=2.4 Score=38.48 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 356688888 68999999999999997 67777644
No 337
>PRK06823 ornithine cyclodeaminase; Validated
Probab=89.82 E-value=2.2 Score=40.19 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=53.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..++.|+|+|..+-.-++.+.. ..+.++.++|. ...|+++.++.+++. .+++...
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~~~~~~~~~--~~~v~~~--- 183 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR-------------------SETALEEYRQYAQAL--GFAVNTT--- 183 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhc--CCcEEEE---
Confidence 5789999999999988887763 35677777652 336788888887764 3344332
Q ss_pred cCCcchhhhccCCEEEecCCC
Q 020259 119 IEDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~ 139 (328)
+..++.+.++|+|++|+.+
T Consensus 184 --~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 184 --LDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred --CCHHHHhcCCCEEEEecCC
Confidence 2346777999999999775
No 338
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.81 E-value=1.4 Score=39.33 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=28.2
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+..+++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999985 9999999999999998 6777764
No 339
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=89.75 E-value=0.5 Score=43.97 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=28.3
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
.+|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence 479999999999999999999999 6999986543
No 340
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.73 E-value=1.5 Score=41.64 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=45.8
Q ss_pred CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259 41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI 119 (328)
Q Consensus 41 ~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~ 119 (328)
.+|+|+|+ |-+|.|+++.|...+.-...|.= +.+.+..|+.= . ........
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~--~~~~~l~~----- 56 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P--FAGKNLRV----- 56 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c--cCCcceEE-----
Confidence 57999995 88999999999966554333221 11223345431 1 11111111
Q ss_pred CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259 120 EDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (328)
Q Consensus 120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~ 149 (328)
.+.+..-++++|+|+.|+.+-..+.++..+
T Consensus 57 ~~~~~~~~~~vD~vFla~p~~~s~~~v~~~ 86 (336)
T PRK05671 57 REVDSFDFSQVQLAFFAAGAAVSRSFAEKA 86 (336)
T ss_pred eeCChHHhcCCCEEEEcCCHHHHHHHHHHH
Confidence 111212248899999998865555555544
No 341
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.69 E-value=1.9 Score=38.62 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++ ++++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 9 ~~-~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 9 DL-SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred Cc-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 35 578899998 69999999999999998 6777764
No 342
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.69 E-value=0.52 Score=44.17 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|+|+|++|+-++..|..+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4679999999999999999999995 788887654
No 343
>PRK13984 putative oxidoreductase; Provisional
Probab=89.68 E-value=1.9 Score=44.31 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+..+|+|||+|..|...|..|.+.|+ +++++|....-...+... +....+.+.-.+...+.+++.+ +++.....-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~--i~~~~~~~~~~~~~~~~~~~~g--v~~~~~~~v 356 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYG--IPSYRLPDEALDKDIAFIEALG--VKIHLNTRV 356 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeec--CCcccCCHHHHHHHHHHHHHCC--cEEECCCEe
Confidence 46789999999999999999999998 799998654322222111 1111122211222334555543 343222110
Q ss_pred cCC-cchhhhccCCEEEecCCC
Q 020259 119 IED-KDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~-~~~~~~~~~dvVi~~~d~ 139 (328)
..+ ...+.-..||.||.++..
T Consensus 357 ~~~~~~~~~~~~yD~vilAtGa 378 (604)
T PRK13984 357 GKDIPLEELREKHDAVFLSTGF 378 (604)
T ss_pred CCcCCHHHHHhcCCEEEEEcCc
Confidence 011 112233479999888764
No 344
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=89.67 E-value=0.74 Score=42.57 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.7
Q ss_pred EEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 45 VVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 45 iiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+||+|.+|..++++|...|. +++++|.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~ 29 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFP 29 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 58999999999999999997 799998653
No 345
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.66 E-value=0.47 Score=45.79 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.6
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.| ..++|.|||+|.+|+.+|+.|...|+ ++..+|+
T Consensus 113 ~L-~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SL-HDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred Cc-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 47 69999999999999999999999998 6778874
No 346
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=89.63 E-value=2.4 Score=46.31 Aligned_cols=95 Identities=17% Similarity=0.259 Sum_probs=55.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
+..+|+|||.|..|...|..|++.|. +++|+|....--.-+.. -+...-.++.-.+...+.+.++ ++++.... .
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~--gip~~rl~~e~~~~~~~~l~~~--Gv~~~~~~-~ 502 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQY--GIPSFRLPRDIIDREVQRLVDI--GVKIETNK-V 502 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeec--cCCccCCCHHHHHHHHHHHHHC--CCEEEeCC-c
Confidence 36789999999999999999999998 79999865322111111 1111122333344455566655 35544321 1
Q ss_pred cC-Ccc-hhhh--ccCCEEEecCCC
Q 020259 119 IE-DKD-ISFY--NDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~-~~~-~~~~--~~~dvVi~~~d~ 139 (328)
+. +.. .+.. .+||.||.++..
T Consensus 503 vg~~~~~~~l~~~~~yDaViIATGa 527 (1006)
T PRK12775 503 IGKTFTVPQLMNDKGFDAVFLGVGA 527 (1006)
T ss_pred cCCccCHHHHhhccCCCEEEEecCC
Confidence 11 111 2222 369999888765
No 347
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.62 E-value=0.68 Score=41.47 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.2
Q ss_pred HHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 36 ~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+| ++.+|+|+|+ |++|.++++.|+..|. ++.++|.+.
T Consensus 4 ~~-~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~ 41 (255)
T PRK06057 4 RL-AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP 41 (255)
T ss_pred cC-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence 36 6889999995 9999999999999997 688887543
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.59 E-value=0.5 Score=44.18 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=29.4
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 69999999999999999999998 799999664
No 349
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.59 E-value=0.52 Score=44.65 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=51.7
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ++.+|.|||+|.+|..+|++|..+|+ ++.+.+... .++...+ .+. .+.+
T Consensus 13 ~~L-~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~A---~~~--G~~~-- 64 (330)
T PRK05479 13 SLI-KGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKKA---EAD--GFEV-- 64 (330)
T ss_pred hhh-CCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHHH---HHC--CCee--
Confidence 457 68999999999999999999999998 566654211 1111111 111 2221
Q ss_pred EecccCCcchhhhccCCEEEecCCCHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYI 146 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l 146 (328)
. ...+.++++|+|+.++.+......+
T Consensus 65 -----~-s~~eaa~~ADVVvLaVPd~~~~~V~ 90 (330)
T PRK05479 65 -----L-TVAEAAKWADVIMILLPDEVQAEVY 90 (330)
T ss_pred -----C-CHHHHHhcCCEEEEcCCHHHHHHHH
Confidence 1 2456778999999998876665555
No 350
>PRK09126 hypothetical protein; Provisional
Probab=89.57 E-value=0.45 Score=45.65 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=31.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
++..|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence 46789999999999999999999999 6899986653
No 351
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.55 E-value=1.7 Score=42.90 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=28.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .|-+|+.+++.|...|. ++..+|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 367899999 69999999999999997 5777764
No 352
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.54 E-value=1.6 Score=38.93 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=30.6
Q ss_pred HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..+ ++.+++|.| .|++|..+++.|+..|. ++++++.
T Consensus 7 ~~~-~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r 43 (264)
T PRK12829 7 KPL-DGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDV 43 (264)
T ss_pred hcc-CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 346 689999998 69999999999999998 5888773
No 353
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.53 E-value=0.47 Score=44.79 Aligned_cols=32 Identities=44% Similarity=0.684 Sum_probs=29.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 579999999999999999999996 79998854
No 354
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.51 E-value=4.1 Score=37.28 Aligned_cols=30 Identities=33% Similarity=0.497 Sum_probs=24.8
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCC-CeEEEEe
Q 020259 42 RILVVG-AGGLGCELLKDLALSGF-KNLEVID 71 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gv-g~itlvD 71 (328)
+|+|.| .|.+|.++++.|...|- .+++++|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 589998 59999999999999873 3677766
No 355
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=89.50 E-value=1.8 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=31.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 46789999999999999999999998 799998654
No 356
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.46 E-value=3.3 Score=40.88 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46789999999999999999999998 79999964
No 357
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=89.43 E-value=0.52 Score=46.30 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.+|+|||+|-.|+|+|..|++.|+ +++|++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence 479999999999999999999998 79999853
No 358
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.41 E-value=3.1 Score=38.64 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=50.5
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
.| ++.+++|.| .||+|.++++.|+..|. ++.+.|... ..+++.+.+.++... .++..
T Consensus 9 ~l-~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~ 66 (306)
T PRK07792 9 DL-SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA 66 (306)
T ss_pred CC-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence 45 578888888 68999999999999998 677766321 123445555565533 34555
Q ss_pred EecccCCcc---------hhhhccCCEEEecC
Q 020259 115 HFCRIEDKD---------ISFYNDFNIIVLGL 137 (328)
Q Consensus 115 ~~~~~~~~~---------~~~~~~~dvVi~~~ 137 (328)
...++.+.. .+ +...|+||.+.
T Consensus 67 ~~~Dv~d~~~~~~~~~~~~~-~g~iD~li~nA 97 (306)
T PRK07792 67 VAGDISQRATADELVATAVG-LGGLDIVVNNA 97 (306)
T ss_pred EeCCCCCHHHHHHHHHHHHH-hCCCCEEEECC
Confidence 555554421 12 35678887764
No 359
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.40 E-value=0.49 Score=47.85 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 46789999999999999999999999 8999863
No 360
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.36 E-value=0.59 Score=43.58 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 48999999999999999999999998 89998744
No 361
>PRK05876 short chain dehydrogenase; Provisional
Probab=89.34 E-value=2 Score=39.24 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.5
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~ 39 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD 39 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467788887 88999999999999998 67777633
No 362
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.33 E-value=1.3 Score=43.54 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=30.3
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++|+|+|.|++|..+|+.|...|. ++++.|.+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 46789999999999999999999997 78888854
No 363
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.30 E-value=2.1 Score=38.81 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=29.6
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+ ++.+++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 8 ~-~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 8 L-KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred c-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 577889998 58999999999999998 68887743
No 364
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=89.27 E-value=1.6 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 356788888 68999999999999995 7888764
No 365
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.26 E-value=3.1 Score=37.02 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
..+|+|.| .|++|..+++.|+..|. ++++.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 45799998 58999999999999997 555554
No 366
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.26 E-value=1.5 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=24.7
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV 69 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl 69 (328)
...+++|.| .|++|.++++.|+..|.. +.+
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~ 33 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYD-IAV 33 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence 457899998 689999999999999974 444
No 367
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.22 E-value=0.31 Score=45.63 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..| ..++|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus 118 ~~L-~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 118 KLL-YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 468 69999999999999999998887788 78888853
No 368
>PRK05872 short chain dehydrogenase; Provisional
Probab=89.20 E-value=3.1 Score=38.35 Aligned_cols=35 Identities=34% Similarity=0.621 Sum_probs=29.5
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+ ++.+|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 7 l-~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 7 L-AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 578899998 58999999999999997 68887643
No 369
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.19 E-value=2.2 Score=38.58 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=25.4
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+|+|.| .|++|.++++.|+..|. ++++++.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 588888 68999999999999998 5777653
No 370
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.19 E-value=2.3 Score=42.04 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=30.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 35789999999999999999999997 79999855
No 371
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=89.13 E-value=0.54 Score=45.46 Aligned_cols=35 Identities=37% Similarity=0.430 Sum_probs=31.6
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.| .+++|.|||+|.+|..+++.|...|+ ++..+|+
T Consensus 113 ~l-~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DL-AERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred Cc-CcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 57 68999999999999999999999998 6888875
No 372
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.11 E-value=0.77 Score=43.61 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=30.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~ 76 (328)
.|+|||.|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999997 79999988764
No 373
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.10 E-value=0.59 Score=44.51 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=29.9
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
.|+|||.|-+|+.+|..|++.|. +++|+|....
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999997 7999998654
No 374
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.04 E-value=2.1 Score=32.64 Aligned_cols=81 Identities=25% Similarity=0.501 Sum_probs=48.5
Q ss_pred cCCcEEEEcCChHHHHHHH-HHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVGAGGLGCELLK-DLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG~gglG~evak-nL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
+..+|+|+|+|++|..++. .....|.+-..++|.+. +.+|+.- . .+.+. .
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gipV~---~ 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GIPVY---G 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TEEEE---S
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CEEee---c
Confidence 3678999999999998864 34567888788888332 2333311 0 22222 1
Q ss_pred ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+.+ -.+.. +.|+.|.++....++....+++
T Consensus 53 ~~~~-l~~~~-~i~iaii~VP~~~a~~~~~~~~ 83 (96)
T PF02629_consen 53 SMDE-LEEFI-EIDIAIITVPAEAAQEVADELV 83 (96)
T ss_dssp SHHH-HHHHC-TTSEEEEES-HHHHHHHHHHHH
T ss_pred cHHH-hhhhh-CCCEEEEEcCHHHHHHHHHHHH
Confidence 1111 12222 3888888987777776666665
No 375
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=88.98 E-value=3.9 Score=36.10 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=50.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~ 120 (328)
.++.|+|.|-+|+.++..|+.+|. +++|-- + -+..+.+++++.+ -|.+. .
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs---------------~---r~~~~~~a~a~~l---~~~i~--------~ 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGS---------------S---RGPKALAAAAAAL---GPLIT--------G 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC-eEEEec---------------C---CChhHHHHHHHhh---ccccc--------c
Confidence 368999999999999999999995 555531 0 0112333333333 33321 1
Q ss_pred CcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 121 DKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
..+.+-.+.+|+||.++.-......+.++.
T Consensus 52 ~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 52 GSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred CChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 235666788999999988665555444443
No 376
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.93 E-value=3.2 Score=40.92 Aligned_cols=33 Identities=39% Similarity=0.436 Sum_probs=28.4
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|.| .|-+|+++++.|...|. +++.+|..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57899998 68999999999999997 78888743
No 377
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.90 E-value=0.44 Score=49.93 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
=.+|.|||+|..|+.||..++.+|+ .++++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3579999999999999999999998 899999654
No 378
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=88.90 E-value=2.8 Score=45.57 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||.|.-|-..|..|++.|. +++|+|...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 5689999999999999999999998 799999654
No 379
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.89 E-value=0.79 Score=48.05 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=30.1
Q ss_pred CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~ 74 (328)
-++|.|||+|..|+.+|-.++ .+|+ .++++|.+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 368999999999999999999 8898 899999643
No 380
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.84 E-value=0.53 Score=45.47 Aligned_cols=34 Identities=35% Similarity=0.488 Sum_probs=30.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...|+|||+|..|..+|-.|.+.|+ +++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 4679999999999999999999998 799999765
No 381
>PRK08643 acetoin reductase; Validated
Probab=88.83 E-value=2.6 Score=37.59 Aligned_cols=32 Identities=31% Similarity=0.592 Sum_probs=27.0
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788887 78999999999999997 6877763
No 382
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=88.81 E-value=4.6 Score=35.63 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=44.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 43 VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
|+|+|+ |.+|..+++.|...|. +++.+ .+.. .....+.++.. .+++. ..+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l---------------~R~~------~~~~~~~l~~~--g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRAL---------------VRDP------SSDRAQQLQAL--GAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEE---------------ESSS------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEE---------------Eecc------chhhhhhhhcc--cceEe--ecccCC
Confidence 789995 9999999999999776 45553 1211 22234445553 45543 333333
Q ss_pred c--chhhhccCCEEEecCC
Q 020259 122 K--DISFYNDFNIIVLGLD 138 (328)
Q Consensus 122 ~--~~~~~~~~dvVi~~~d 138 (328)
. -.+.+++.|.|+.++.
T Consensus 55 ~~~l~~al~g~d~v~~~~~ 73 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTP 73 (233)
T ss_dssp HHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHcCCceEEeecC
Confidence 2 2567899999998877
No 383
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.77 E-value=2.9 Score=39.09 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=55.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
..++.|+|+|..|-.-++.+.. -++.++.++|. ...|++..++++++.. .+++...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~f~~~~~~~~-~~~v~~~--- 173 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR-------------------NFDHARAFAERFSKEF-GVDIRPV--- 173 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHHhc-CCcEEEe---
Confidence 4678999999999988877764 46788888762 2367888888888743 3444443
Q ss_pred cCCcchhhhccCCEEEecCCCH
Q 020259 119 IEDKDISFYNDFNIIVLGLDSI 140 (328)
Q Consensus 119 ~~~~~~~~~~~~dvVi~~~d~~ 140 (328)
+..++...++|+|++|+.+.
T Consensus 174 --~~~~eav~~aDIV~taT~s~ 193 (301)
T PRK06407 174 --DNAEAALRDADTITSITNSD 193 (301)
T ss_pred --CCHHHHHhcCCEEEEecCCC
Confidence 23567789999999998763
No 384
>PRK06185 hypothetical protein; Provisional
Probab=88.68 E-value=0.64 Score=44.89 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++..|+|||.|.+|..+|..|++.|+ +++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 36789999999999999999999998 799999764
No 385
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=88.63 E-value=2.5 Score=40.18 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=49.8
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259 39 EYARILVVGA-GGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH 115 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l--~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~ 115 (328)
++.+|.|||+ |-+|.|+++.|.. -.+.+|..+-.+ ...|+.=. +. ...+.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~-- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ-- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence 3678999995 8899999999998 456677776322 23333211 11 1122332
Q ss_pred ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA 150 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~ 150 (328)
.+ +...|+++|+|+.|+..-....+..++.
T Consensus 58 --~~---~~~~~~~~Dvvf~a~p~~~s~~~~~~~~ 87 (336)
T PRK08040 58 --DA---AEFDWSQAQLAFFVAGREASAAYAEEAT 87 (336)
T ss_pred --eC---chhhccCCCEEEECCCHHHHHHHHHHHH
Confidence 11 1223478999999988766655555543
No 386
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=88.58 E-value=2.7 Score=38.57 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=51.9
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 41 ARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
.+|.+||+|..|..++.-|...|. .+|.+.|... .| ++.+...++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-------------------e~----~~~l~~~~g~~-~----- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE-------------------EK----RAALAAEYGVV-T----- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH-------------------HH----HHHHHHHcCCc-c-----
Confidence 479999999999999999999994 4666654221 12 22334434332 1
Q ss_pred ccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAV 149 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~ 149 (328)
...+.+.....|+||.|+-+......+.++
T Consensus 53 --~~~~~~~~~~advv~LavKPq~~~~vl~~l 82 (266)
T COG0345 53 --TTDNQEAVEEADVVFLAVKPQDLEEVLSKL 82 (266)
T ss_pred --cCcHHHHHhhCCEEEEEeChHhHHHHHHHh
Confidence 233567778899999998875555444443
No 387
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.54 E-value=0.81 Score=45.98 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=34.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR 82 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r 82 (328)
...|+|||.|.+|+.+|..|++.|. +++|+|...+....-.+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS~~ 47 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATSSA 47 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcccc
Confidence 5679999999999999999999999 69999976664433333
No 388
>PRK07074 short chain dehydrogenase; Provisional
Probab=88.51 E-value=3 Score=37.17 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=27.4
Q ss_pred CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+.+++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 567999985 8999999999999996 6888764
No 389
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=88.51 E-value=0.5 Score=45.74 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCC--CCChHHHHHHHHHHhhCCCc
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGV 110 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~d--iG~~Ka~a~~~~l~~lnp~v 110 (328)
++| ++.+|++.|+|+-|..+++.|..+|+. +|.++|..=+-..+ .+| .++.|.+.+.+......
T Consensus 195 k~l-~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~--------r~~~~~~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKL-KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDG--------REDLTMNQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCc-cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCC--------CcccccchHHHHHHHhhhcccc---
Confidence 568 699999999999999999999999998 99999966432211 122 45666655543332221
Q ss_pred EEEEEecccCCcchhhhccCCEEEecCCC-HHHHHHHHHHH
Q 020259 111 NIVPHFCRIEDKDISFYNDFNIIVLGLDS-IEARSYINAVA 150 (328)
Q Consensus 111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d~-~~~~~~l~~~~ 150 (328)
+ .+-+.++|+.|.+... .-...++.+++
T Consensus 263 ~------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma 291 (432)
T COG0281 263 L------------DLALAGADVLIGVSGVGAFTEEMVKEMA 291 (432)
T ss_pred c------------cccccCCCEEEEcCCCCCcCHHHHHHhc
Confidence 1 1134678888777542 22334555554
No 390
>PRK08589 short chain dehydrogenase; Validated
Probab=88.49 E-value=2 Score=38.96 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.1
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
| ++++++|.| .+|+|.++++.|+..|. ++.+++
T Consensus 4 l-~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 4 L-ENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 5 577899998 58999999999999997 677765
No 391
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.44 E-value=0.65 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 4579999999999999999999998 799999764
No 392
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.42 E-value=0.61 Score=40.35 Aligned_cols=84 Identities=21% Similarity=0.274 Sum_probs=45.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~ 121 (328)
+|.|+|+|=+|...|-.|+..|. +++-+|.|.-....+++.... +..+-.+.+.++..+ +...... .
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p----~~E~~l~~ll~~~~~-~~~l~~t-------~ 68 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELP----IYEPGLDELLKENVS-AGRLRAT-------T 68 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSS----S-CTTHHHHHHHHHH-TTSEEEE-------S
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhcccc----ccccchhhhhccccc-cccchhh-------h
Confidence 69999999999999999999997 788999887655555544221 112222222222221 2222221 1
Q ss_pred cchhhhccCCEEEecCC
Q 020259 122 KDISFYNDFNIIVLGLD 138 (328)
Q Consensus 122 ~~~~~~~~~dvVi~~~d 138 (328)
...+.++++|+++.|+.
T Consensus 69 ~~~~ai~~adv~~I~Vp 85 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVP 85 (185)
T ss_dssp EHHHHHHH-SEEEE---
T ss_pred hhhhhhhccceEEEecC
Confidence 12344688999988865
No 393
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.28 E-value=2.1 Score=38.12 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=29.7
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 578899998 68999999999999998 78888754
No 394
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.28 E-value=3.9 Score=38.20 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=29.4
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|.|+|++|..++..+...|..+++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 4679999999999999999999999976777764
No 395
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=88.20 E-value=0.53 Score=37.18 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=18.5
Q ss_pred cCChHHHHHHHHHHHh----CCCeEEEEeCC
Q 020259 47 GAGGLGCELLKDLALS----GFKNLEVIDMD 73 (328)
Q Consensus 47 G~gglG~evaknL~l~----Gvg~itlvD~d 73 (328)
|+|.+|..+++.|... ++.-..|.|.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~ 31 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS 31 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC
Confidence 8999999999999876 44444555544
No 396
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=88.19 E-value=0.63 Score=45.14 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=28.5
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecC
Confidence 69999999999999999999998 68898864
No 397
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.11 E-value=3.3 Score=36.34 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=27.4
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|+| .|++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r 38 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITAR 38 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeC
Confidence 357899998 58999999999999998 5777653
No 398
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.09 E-value=2.8 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=30.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|||+|..|...|..|++.|. +++++|..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 46789999999999999999999998 79999964
No 399
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.99 E-value=0.7 Score=48.00 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.6
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999998 699999874
No 400
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.98 E-value=0.77 Score=44.24 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|+|+|.+|..+++.+...|+ +++++|.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 36789999999999999999999999 69999854
No 401
>PLN00016 RNA-binding protein; Provisional
Probab=87.94 E-value=2.8 Score=40.14 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=29.1
Q ss_pred cCCcEEEE----c-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVV----G-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~Vlii----G-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+..+|+|+ | .|-+|+.+++.|...|. ++++++.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCC
Confidence 35789999 7 58899999999999996 788887543
No 402
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=87.92 E-value=0.93 Score=46.00 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=32.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE 76 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~ 76 (328)
+..|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 5789999999999999999999998 89999976553
No 403
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=87.87 E-value=1.3 Score=39.74 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=29.6
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++.+++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 477899998 69999999999999997 688877544
No 404
>PRK07236 hypothetical protein; Provisional
Probab=87.87 E-value=0.74 Score=44.25 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=31.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 46789999999999999999999999 699999654
No 405
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=87.86 E-value=3.8 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.518 Sum_probs=27.5
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVI 70 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlv 70 (328)
.| ++++++|.| .+|+|.++++.|+..|. ++.++
T Consensus 5 ~l-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~ 38 (260)
T PRK08416 5 EM-KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFT 38 (260)
T ss_pred cc-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence 36 578888888 68999999999999998 56665
No 406
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=87.85 E-value=2.4 Score=41.66 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=56.6
Q ss_pred cEEEEcCChH-HHHHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH-HHHHhhCCCcEEEEE
Q 020259 42 RILVVGAGGL-GCELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA-KRVMERVSGVNIVPH 115 (328)
Q Consensus 42 ~VliiG~ggl-G~evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~-~~l~~lnp~v~v~~~ 115 (328)
||.|||+|+. .-++++.|+. ..+++|+|+|-|.= .+ ..+..++ +.+++..+.++++..
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl-------------~~v~~l~~~~~~~~g~~~~v~~t 65 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RL-------------DIILTIAKRYVEEVGADIKFEKT 65 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HH-------------HHHHHHHHHHHHhhCCCeEEEEe
Confidence 7999999985 3366777773 44589999995531 11 1133333 344556777777664
Q ss_pred ecccCCcchhhhccCCEEEec--CCCHHHHHHHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVA 150 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~--~d~~~~~~~l~~~~ 150 (328)
+. ..+-++++|.||++ +...+.|..-.++.
T Consensus 66 tD-----~~~Al~gADfVi~~irvGg~~~r~~De~Ip 97 (425)
T cd05197 66 MD-----LEDAIIDADFVINQFRVGGLTYREKDEQIP 97 (425)
T ss_pred CC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHH
Confidence 33 46778999999998 55666666444555
No 407
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=87.83 E-value=3.5 Score=39.25 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.7
Q ss_pred CcEEEEcCChHHHHHHHHHHH
Q 020259 41 ARILVVGAGGLGCELLKDLAL 61 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l 61 (328)
-||.|+|+|.+|..+++.+..
T Consensus 2 ikVaI~G~GrIGr~va~al~~ 22 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAA 22 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhc
Confidence 379999999999999998875
No 408
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=87.78 E-value=0.86 Score=43.95 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~ 74 (328)
...|+|||+|.+|+.+|..|++. |. +++|+|...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 36899999999999999999998 86 899999764
No 409
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=87.76 E-value=2.4 Score=40.41 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVI 70 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlv 70 (328)
..+|+|+| .|-+|.++++.|.....-+|+.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 57899998 89999999999987666677776
No 410
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=87.71 E-value=1.1 Score=38.72 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=47.3
Q ss_pred cEEEEcCChHHHH-HHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH-HHHhhCCCcEEEEE
Q 020259 42 RILVVGAGGLGCE-LLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK-RVMERVSGVNIVPH 115 (328)
Q Consensus 42 ~VliiG~gglG~e-vaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~-~l~~lnp~v~v~~~ 115 (328)
||.+||+|++-.. .+..++. ...++|.|+|-|. .|. ..+..+++ .+++.++.++++..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~------~RL----------~~~~~~~~~~~~~~~~~~~v~~t 64 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE------ERL----------EIVERLARRMVEEAGADLKVEAT 64 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH------HHH----------HHHHHHHHHHHHHCTTSSEEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 6899999987654 3333332 2335899988554 111 12333344 34556778887664
Q ss_pred ecccCCcchhhhccCCEEEecC--CCHHHHH
Q 020259 116 FCRIEDKDISFYNDFNIIVLGL--DSIEARS 144 (328)
Q Consensus 116 ~~~~~~~~~~~~~~~dvVi~~~--d~~~~~~ 144 (328)
+. ..+-++++|.||++. ...+.|.
T Consensus 65 td-----~~eAl~gADfVi~~irvGg~~~r~ 90 (183)
T PF02056_consen 65 TD-----RREALEGADFVINQIRVGGLEARE 90 (183)
T ss_dssp SS-----HHHHHTTESEEEE---TTHHHHHH
T ss_pred CC-----HHHHhCCCCEEEEEeeecchHHHH
Confidence 33 466789999999983 3444443
No 411
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.70 E-value=3.9 Score=38.67 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+.+|+|.| +|.+|+.+++.|+..|. ++++++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999 68899999999999997 5666553
No 412
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.69 E-value=0.83 Score=44.63 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 47799999999999999999999999 788888543
No 413
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=87.67 E-value=4.6 Score=39.09 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=27.5
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+..+|+|+| .|.+|..+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 356899998 59999999999999997 6777653
No 414
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.63 E-value=4.1 Score=37.71 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=55.2
Q ss_pred HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc
Q 020259 32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV 110 (328)
Q Consensus 32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v 110 (328)
....++ .++-|+|-| ..|+|.++|+.|+..|.+-+.++ + -..+-+.+++.+++.-|.-
T Consensus 5 ~~~e~~-~~kvVvITGASsGIG~~lA~~la~~G~~l~lva----------------r----~~rrl~~v~~~l~~~~~~~ 63 (282)
T KOG1205|consen 5 LFMERL-AGKVVLITGASSGIGEALAYELAKRGAKLVLVA----------------R----RARRLERVAEELRKLGSLE 63 (282)
T ss_pred ccHHHh-CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee----------------h----hhhhHHHHHHHHHHhCCcC
Confidence 445678 588888889 56999999999999999544432 1 1124555556666654444
Q ss_pred EEEEEecccCCcc---------hhhhccCCEEEec
Q 020259 111 NIVPHFCRIEDKD---------ISFYNDFNIIVLG 136 (328)
Q Consensus 111 ~v~~~~~~~~~~~---------~~~~~~~dvVi~~ 136 (328)
++.....++.+.. ...+.+.|++|+.
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 6777777776532 1345678887764
No 415
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=87.62 E-value=0.93 Score=38.37 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=29.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
..++++|+|.|-+|.-+|+.|...|. ++++.|-|.+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 57889999999999999999999997 8999987763
No 416
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.60 E-value=3.9 Score=38.97 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=29.1
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
...+|+|.|+|++|..++..+...|++++..+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3578999999999999998888999977877763
No 417
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=87.58 E-value=0.84 Score=43.66 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=31.9
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
+..+|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 35689999999999999999999998 7999996654
No 418
>PRK08013 oxidoreductase; Provisional
Probab=87.56 E-value=0.77 Score=44.42 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCC
Confidence 5689999999999999999999998 799999654
No 419
>PRK06398 aldose dehydrogenase; Validated
Probab=87.55 E-value=2.6 Score=37.86 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=45.4
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEEEE
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v~~ 114 (328)
| ++.+++|.| .||+|.++++.|+..|. ++.+++.+.-... ...+-..|+.... .+.+.+.+.+....+.+-.
T Consensus 4 l-~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li 77 (258)
T PRK06398 4 L-KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV 77 (258)
T ss_pred C-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5 478899998 67999999999999997 7888776542221 1112344665543 3444555554444444444
Q ss_pred E
Q 020259 115 H 115 (328)
Q Consensus 115 ~ 115 (328)
+
T Consensus 78 ~ 78 (258)
T PRK06398 78 N 78 (258)
T ss_pred E
Confidence 3
No 420
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=87.53 E-value=0.97 Score=44.71 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCccCccCCccc
Q 020259 40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQ 83 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~v~~~nl~r~ 83 (328)
+..|+|||.|-+|..+|..|++. |. +++|+|.+.+-...-+|+
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCcccccccccc
Confidence 47899999999999999999998 64 899999888754444444
No 421
>PRK06184 hypothetical protein; Provisional
Probab=87.50 E-value=0.72 Score=46.12 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=30.6
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 36789999999999999999999999 69999854
No 422
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.49 E-value=5.5 Score=37.66 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=29.2
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+..+|+|.| +|=+|+.+++.|...|. +++.+|..
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 468999999 59999999999999996 78888743
No 423
>PLN02463 lycopene beta cyclase
Probab=87.48 E-value=0.86 Score=45.07 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=40.2
Q ss_pred cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+..+-.+..+....+ ....|+|||+|..|..+|..|+..|+ +++++|...
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 10 KKENLDFELPRFDPSKS----RVVDLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred ccccccccccCCCCccc----cCceEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 34455555666665333 35689999999999999999999998 799999754
No 424
>PRK15076 alpha-galactosidase; Provisional
Probab=87.45 E-value=1.4 Score=43.42 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=43.7
Q ss_pred CcEEEEcCChHHHHHHH--HHH-HhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH-HHHHhhCCCcEEEE
Q 020259 41 ARILVVGAGGLGCELLK--DLA-LSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA-KRVMERVSGVNIVP 114 (328)
Q Consensus 41 ~~VliiG~gglG~evak--nL~-l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~-~~l~~lnp~v~v~~ 114 (328)
.+|.|||+|++|...+- .++ ..+. ..++|+|-|.= +. .+++++. ..+....+.++++.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e------r~----------~~~~~l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE------RL----------EESEIVARKLAESLGASAKITA 65 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH------HH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999999865544 554 2223 38999984431 00 0122222 23333444555554
Q ss_pred EecccCCcchhhhccCCEEEecCC
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d 138 (328)
.+. ..+.++++|+||.+..
T Consensus 66 ttD-----~~eal~dADfVv~ti~ 84 (431)
T PRK15076 66 TTD-----RREALQGADYVINAIQ 84 (431)
T ss_pred ECC-----HHHHhCCCCEEeEeee
Confidence 221 2456789999988844
No 425
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=87.38 E-value=0.83 Score=43.91 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=31.4
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
....|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGL-SVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence 35789999999999999999999999 699999764
No 426
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.38 E-value=3.2 Score=31.69 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEE--ecccCCc---chhhhccCCEEEecCC--CHHHHHHHHHHHHHhhhccCCCCccccc
Q 020259 94 PKAEVAAKRVMERVSGVNIVPH--FCRIEDK---DISFYNDFNIIVLGLD--SIEARSYINAVACSFLEYETDDKPREET 166 (328)
Q Consensus 94 ~Ka~a~~~~l~~lnp~v~v~~~--~~~~~~~---~~~~~~~~dvVi~~~d--~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 166 (328)
.+.....+.+++. +.+...+ ....... -+..++++|+||..+| +......+-+.| ++.
T Consensus 10 ~~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~a-------------kk~ 74 (97)
T PF10087_consen 10 DRERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAA-------------KKY 74 (97)
T ss_pred ccHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHH-------------HHc
Confidence 3455566777775 4555555 2222222 2556788999988777 556677777788 688
Q ss_pred cceEEEeeecce
Q 020259 167 IKPMVDGGTEGF 178 (328)
Q Consensus 167 ~~p~i~~~~~G~ 178 (328)
++|++.+...|.
T Consensus 75 ~ip~~~~~~~~~ 86 (97)
T PF10087_consen 75 GIPIIYSRSRGV 86 (97)
T ss_pred CCcEEEECCCCH
Confidence 999998876554
No 427
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.37 E-value=2.9 Score=37.31 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=27.3
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
.+.+++|.| .|++|.++++.|+..|. ++.+.|
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 467899998 68999999999999997 677765
No 428
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=87.36 E-value=0.85 Score=44.10 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=29.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999997 799999874
No 429
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=87.34 E-value=3.6 Score=39.05 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~ 118 (328)
...+|+|||+|..|.++|..|.+.|. +++++|.+..--.-+... +..............+++.+.+=.+........
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~ 93 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFG--IPEFRIPIERVREGVKELEEAGVVFHTRTKVCC 93 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeec--CcccccCHHHHHHHHHHHHhCCeEEecCcEEee
Q ss_pred cCC--------------cchhhhccCCEEEecCCC
Q 020259 119 IED--------------KDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 119 ~~~--------------~~~~~~~~~dvVi~~~d~ 139 (328)
... ........+|.||.|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred ccccccccccccccccCCHHHHHhhCCEEEEEeCC
No 430
>PRK08278 short chain dehydrogenase; Provisional
Probab=87.29 E-value=4.3 Score=36.84 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.1
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++++|.| .|++|.++++.|+..|. ++.+++..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 467899998 69999999999999997 78887754
No 431
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=87.28 E-value=15 Score=33.20 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=26.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
...+|+-+|||. |. ++..++..|.++++-+|.+.
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~ 152 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP 152 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence 578999999997 64 44567778888899998654
No 432
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=87.28 E-value=2.5 Score=37.77 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.2
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
| ++.+|+|.| .|++|.++++.|+..|. ++.+++
T Consensus 9 l-~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~ 42 (255)
T PRK06113 9 L-DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSD 42 (255)
T ss_pred c-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 5 578899998 78999999999999997 566665
No 433
>PRK08226 short chain dehydrogenase; Provisional
Probab=87.26 E-value=2.9 Score=37.39 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+| ++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~-~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~ 39 (263)
T PRK08226 3 KL-TGKTALITGALQGIGEGIARVFARHGA-NLILLDIS 39 (263)
T ss_pred CC-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 35 578899998 88999999999999998 58887643
No 434
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.23 E-value=3.5 Score=41.16 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|.++|..|.+.|. +++++|...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4799999999999999999999997 799998554
No 435
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=87.21 E-value=2.7 Score=37.80 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++++++|.| .|++|.++++.|+..|. ++.+.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~ 41 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFND 41 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 467899998 68999999999999997 577765
No 436
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.20 E-value=2.3 Score=37.27 Aligned_cols=30 Identities=37% Similarity=0.375 Sum_probs=25.3
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV 69 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl 69 (328)
+..+|+|+| .|++|.++++.|...|.. +++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~ 35 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGAD-VVV 35 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence 457899998 799999999999999984 444
No 437
>PRK07677 short chain dehydrogenase; Provisional
Probab=87.19 E-value=2.8 Score=37.34 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=27.1
Q ss_pred CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5688888 67899999999999998 78887754
No 438
>PRK12744 short chain dehydrogenase; Provisional
Probab=87.17 E-value=3.5 Score=36.84 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=25.7
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV 69 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl 69 (328)
++.+++|.| .|++|.++++.|+..|...+.+
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 467899998 8899999999999999853433
No 439
>PRK12937 short chain dehydrogenase; Provisional
Probab=87.11 E-value=2.9 Score=36.85 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=26.6
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
++++|+|.| .|++|..+++.|+..|. ++.++.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~ 36 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNY 36 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence 467899998 69999999999999998 455543
No 440
>PRK08244 hypothetical protein; Provisional
Probab=87.08 E-value=0.86 Score=45.43 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=29.9
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~ 34 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERL 34 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 4689999999999999999999999 78999854
No 441
>PRK06270 homoserine dehydrogenase; Provisional
Probab=87.07 E-value=3.7 Score=39.08 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCcEEEEcCChHHHHHHHHHHHh
Q 020259 40 YARILVVGAGGLGCELLKDLALS 62 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~ 62 (328)
.-+|.|+|+|.+|..+++.|...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 35799999999999999999765
No 442
>PRK08264 short chain dehydrogenase; Validated
Probab=87.00 E-value=1 Score=39.69 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=30.9
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+.+|+|.| .|++|.++++.|+..|..++.+++.+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 468899998 699999999999999987788887543
No 443
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.98 E-value=3.7 Score=38.75 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.2
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467899998 59999999999999997 6888763
No 444
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=86.96 E-value=0.83 Score=44.20 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 5689999999999999999999998 68999974
No 445
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=86.93 E-value=0.77 Score=39.48 Aligned_cols=34 Identities=29% Similarity=0.559 Sum_probs=28.9
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD 71 (328)
.+ ++++|+|||.|-.|.+++.+|+..| .+++++=
T Consensus 164 ~~-~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 164 DF-KGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp GC-TTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred hc-CCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 46 5899999999999999999999999 7999873
No 446
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.91 E-value=0.89 Score=42.75 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=29.3
Q ss_pred cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 020259 42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~ 74 (328)
||.|||+ |.+|+.+|-.|+..|+ .+|.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999998 5799999644
No 447
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.85 E-value=2.6 Score=36.93 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=28.7
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++.+|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 457899998 599999999999999985 7887654
No 448
>PRK05717 oxidoreductase; Validated
Probab=86.84 E-value=1.9 Score=38.53 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=29.0
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 467899998 68999999999999996 78888754
No 449
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.84 E-value=0.75 Score=43.30 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=27.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD 71 (328)
++.+|.|||+|.+|..++++|..+|+ ++++.+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 57899999999999999999999998 455443
No 450
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.80 E-value=2.8 Score=37.42 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.6
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
| ++..++|.| .||+|.++++.|+..|. ++.++|.
T Consensus 6 ~-~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 6 L-DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 5 577888887 77999999999999997 6777764
No 451
>PLN02740 Alcohol dehydrogenase-like
Probab=86.79 E-value=5.1 Score=38.40 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=30.5
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
++...+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 434678999999999999999999999877888764
No 452
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=86.75 E-value=3.9 Score=37.44 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=24.5
Q ss_pred cEEEEc-CChHHHHHHHHHHH-hCCCeEEEEe
Q 020259 42 RILVVG-AGGLGCELLKDLAL-SGFKNLEVID 71 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l-~Gvg~itlvD 71 (328)
+|.|+| +|.+|..+++.+.. .++.=+.++|
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 799999 59999999999985 5665556666
No 453
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.68 E-value=0.55 Score=49.40 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=30.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.+|.|||+|..|+.||..++.+|+ .++++|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999998 799999554
No 454
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=86.62 E-value=0.98 Score=43.49 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=28.6
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
.|+|||+|..|+..|..|++.|. +++|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 59999999999999999999998 68999876
No 455
>PRK05855 short chain dehydrogenase; Validated
Probab=86.62 E-value=2.5 Score=42.51 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.6
Q ss_pred cHHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 30 GTELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 30 G~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+...+..+ .+.+++|+| .||+|.++++.|+..|. ++.+++.
T Consensus 306 ~~~~~~~~-~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r 347 (582)
T PRK05855 306 VGRPRGPF-SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDI 347 (582)
T ss_pred hccccccC-CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 33444567 578899998 59999999999999998 4777763
No 456
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=86.58 E-value=3.5 Score=37.01 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=44.8
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEEEE
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v~~ 114 (328)
| +++.++|.| .|++|.++++.|+..|. ++.++|.+.-..... +..+-..|+.... .+.+.+.+.+..+.+.+-.
T Consensus 7 l-~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 82 (266)
T PRK06171 7 L-QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV 82 (266)
T ss_pred C-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5 578889998 78999999999999998 677777554222111 1112234565433 3344444444444444443
Q ss_pred E
Q 020259 115 H 115 (328)
Q Consensus 115 ~ 115 (328)
+
T Consensus 83 ~ 83 (266)
T PRK06171 83 N 83 (266)
T ss_pred E
Confidence 3
No 457
>PRK08163 salicylate hydroxylase; Provisional
Probab=86.46 E-value=1 Score=43.23 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence 5689999999999999999999999 699998553
No 458
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.43 E-value=4.8 Score=37.38 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.9
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
+.+|+|.| .|++|+.+++.|+..|. ++.+++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEE
Confidence 46799998 69999999999999997 566554
No 459
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.40 E-value=1.1 Score=41.76 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.5
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..++|.|+|.|-+|.+.||..+.+|. .+||.|-+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecC
Confidence 57899999999999999999999997 79999843
No 460
>PRK07024 short chain dehydrogenase; Provisional
Probab=86.36 E-value=1.8 Score=38.78 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=28.3
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788887 88999999999999998 78888754
No 461
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=86.35 E-value=1.2 Score=46.01 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=33.0
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN 79 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n 79 (328)
..|+|||.|.+|+.+|..|++.|. +++|+|.+.+...-
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~Gt 109 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSGT 109 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCCc
Confidence 579999999999999999999999 69999987654433
No 462
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=86.33 E-value=1 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence 4679999999999999999999998 799998654
No 463
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=86.32 E-value=7.2 Score=40.51 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259 31 TELRDDLQEYARILVVG-AGGLGCELLKDLALS-GFKNLEVIDM 72 (328)
Q Consensus 31 ~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~-Gvg~itlvD~ 72 (328)
..+-..- ++.+|+|.| .|-+|+++++.|... |. +++.+|.
T Consensus 307 ~~~~~~~-~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r 348 (660)
T PRK08125 307 KPACSAK-RRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDI 348 (660)
T ss_pred cchhhhh-cCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeC
Confidence 3333444 478899999 699999999999986 55 7777774
No 464
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.32 E-value=2.8 Score=37.32 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=29.9
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 578889998 67999999999999998 788887654
No 465
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.28 E-value=0.92 Score=43.60 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 4589999999999999999999998 899999653
No 466
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=86.27 E-value=1 Score=43.36 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...|+|||+|.+|..+|-.|.+.|+ +++|+|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence 4679999999999999999999997 79999987
No 467
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.22 E-value=3.8 Score=36.30 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=27.4
Q ss_pred cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
+.++++|.| .+|+|.++++.|+..|. ++.+++.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r 37 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQ 37 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence 467889998 66799999999999998 5777653
No 468
>PRK06932 glycerate dehydrogenase; Provisional
Probab=86.21 E-value=0.65 Score=43.71 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+-|.-.|. ++..+|... ..+.. .+
T Consensus 143 ~~l-~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~-------------~~~~~--------------~~------ 187 (314)
T PRK06932 143 TDV-RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG-------------ASVCR--------------EG------ 187 (314)
T ss_pred ccc-CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc-------------ccccc--------------cc------
Confidence 468 69999999999999999999998888 566655210 00000 00
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS 152 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~ 152 (328)
...-++.++++|+|+.++. +.+++..+|.....
T Consensus 188 -----~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~ 221 (314)
T PRK06932 188 -----YTPFEEVLKQADIVTLHCPLTETTQNLINAETLA 221 (314)
T ss_pred -----cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence 0123677889999977754 67788888876543
No 469
>PRK06487 glycerate dehydrogenase; Provisional
Probab=86.20 E-value=1 Score=42.48 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=54.1
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| .+++|.|||+|.+|.++|+-|.-.|. ++..+|... ..... .
T Consensus 144 ~~l-~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~-------------------~--- 187 (317)
T PRK06487 144 VEL-EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP-------------------D--- 187 (317)
T ss_pred ccc-CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc-------------------c---
Confidence 358 69999999999999999999998887 677766421 00000 0
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS 152 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~ 152 (328)
. ..-+++++++|+|+.++. +.+++..+|.....
T Consensus 188 ---~--~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~ 221 (317)
T PRK06487 188 ---R--LPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221 (317)
T ss_pred ---c--cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence 0 024567889999977744 67788888876644
No 470
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=86.18 E-value=5.9 Score=41.36 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=27.4
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
.++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 56788888 68999999999999997 7888774
No 471
>PLN02494 adenosylhomocysteinase
Probab=86.18 E-value=1.1 Score=44.28 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=31.8
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
...+|+|+|+|.+|..+|+.+...|. +++++|.|..
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 57899999999999999999999998 6888886643
No 472
>PRK12743 oxidoreductase; Provisional
Probab=86.14 E-value=4.4 Score=36.24 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
..+|+|.| .|++|.++++.|+..|. ++.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~ 33 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITW 33 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46788888 67999999999999998 555553
No 473
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=86.09 E-value=1.2 Score=45.02 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD 71 (328)
.+||+|||+|..|-..+|+|...|+ .+++++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE 31 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL-EVTCFE 31 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-CCeEEe
Confidence 3689999999999999999999999 678887
No 474
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.09 E-value=1.1 Score=44.73 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=31.0
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...+|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 46889999999999999999999998 89999854
No 475
>PRK08507 prephenate dehydrogenase; Validated
Probab=85.99 E-value=1.2 Score=40.94 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=26.7
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCC-eEEEEeC
Q 020259 42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDM 72 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg-~itlvD~ 72 (328)
+|.|||+|.+|..+++.|...|.. +++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 5776663
No 476
>CHL00194 ycf39 Ycf39; Provisional
Probab=85.98 E-value=8.4 Score=35.84 Aligned_cols=29 Identities=24% Similarity=0.603 Sum_probs=25.3
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVID 71 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD 71 (328)
+|+|.| .|-+|+.+++.|...|. +++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEE
Confidence 699999 59999999999999997 677765
No 477
>PRK12746 short chain dehydrogenase; Provisional
Probab=85.98 E-value=2.6 Score=37.45 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=27.0
Q ss_pred HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259 36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVI 70 (328)
Q Consensus 36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlv 70 (328)
+| ++.+|+|.| .|++|.++++.|+..|. ++.+.
T Consensus 3 ~~-~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~ 36 (254)
T PRK12746 3 NL-DGKVALVTGASRGIGRAIAMRLANDGA-LVAIH 36 (254)
T ss_pred CC-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence 35 578999998 88999999999999987 45443
No 478
>PRK06179 short chain dehydrogenase; Provisional
Probab=85.97 E-value=3.7 Score=36.92 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.4
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+.+|+|.| .|++|.++++.|+..|. ++++++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 45688888 68999999999999997 588887654
No 479
>PLN02366 spermidine synthase
Probab=85.92 E-value=5.3 Score=37.52 Aligned_cols=33 Identities=30% Similarity=0.711 Sum_probs=23.0
Q ss_pred CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~ 74 (328)
..+||+||+|+ |. +++.+++ .++.+++++|-|.
T Consensus 92 pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD~ 125 (308)
T PLN02366 92 PKKVLVVGGGD-GG-VLREIARHSSVEQIDICEIDK 125 (308)
T ss_pred CCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECCH
Confidence 47899999885 22 3344444 4688999998654
No 480
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=85.91 E-value=1.1 Score=42.13 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=53.4
Q ss_pred HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
..| ..++|.|||+|.+|.++|+.+.-.|. ++..+|..... .+.+ +.
T Consensus 141 ~~L-~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~------------~~~~-----------------~~--- 186 (311)
T PRK08410 141 GEI-KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKN------------KNEE-----------------YE--- 186 (311)
T ss_pred ccc-CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccc------------cccC-----------------ce---
Confidence 468 69999999999999999999988887 67777752100 0000 00
Q ss_pred EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259 115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS 152 (328)
Q Consensus 115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~ 152 (328)
...-+++++.+|+|+.++. +.+++..+++....
T Consensus 187 -----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~ 220 (311)
T PRK08410 187 -----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELK 220 (311)
T ss_pred -----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHH
Confidence 0013567788898866644 56777777776543
No 481
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.88 E-value=0.98 Score=43.26 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=30.7
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHh---CCCeEEEEeCC
Q 020259 39 EYARILVVGAGGLGCELLKDLALS---GFKNLEVIDMD 73 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~---Gvg~itlvD~d 73 (328)
+..+|+|||+|..|..+|-.|.+. |+ +++|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence 357899999999999999999998 98 79999974
No 482
>PRK06753 hypothetical protein; Provisional
Probab=85.85 E-value=1.1 Score=42.55 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=29.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
+|+|||+|..|..+|..|.+.|+ +++|++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 69999999999999999999999 589998554
No 483
>PRK08303 short chain dehydrogenase; Provisional
Probab=85.81 E-value=6.5 Score=36.60 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=29.2
Q ss_pred HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| ++..++|.|+ +|+|.++++.|+..|. ++.+++.+
T Consensus 6 l-~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 L-RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred C-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5 5778888885 6999999999999997 78887754
No 484
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=85.74 E-value=2.5 Score=41.55 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=42.3
Q ss_pred cEEEEcCChHHHHHHH--HHHHh-CC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH----HHHhhCCCcEE
Q 020259 42 RILVVGAGGLGCELLK--DLALS-GF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK----RVMERVSGVNI 112 (328)
Q Consensus 42 ~VliiG~gglG~evak--nL~l~-Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~----~l~~lnp~v~v 112 (328)
+|.|||+|++|...+- .++.. +. .+++|+|.+. .+++.... .+....+..++
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~-------------------e~l~~~~~~~~~~~~~~~~~~~I 62 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE-------------------ERLETVEILAKKIVEELGAPLKI 62 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeEE
Confidence 6999999999987554 45421 22 4899998443 12222222 23333334444
Q ss_pred EEEecccCCcchhhhccCCEEEecCC
Q 020259 113 VPHFCRIEDKDISFYNDFNIIVLGLD 138 (328)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~dvVi~~~d 138 (328)
...+ ...+.++++|+||.+..
T Consensus 63 ~~tt-----D~~eal~~AD~Vi~ai~ 83 (423)
T cd05297 63 EATT-----DRREALDGADFVINTIQ 83 (423)
T ss_pred EEeC-----CHHHHhcCCCEEEEeeE
Confidence 4321 12456789999988864
No 485
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=85.69 E-value=5.2 Score=34.12 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=39.3
Q ss_pred cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
.++|+| .||+|.++++.|+..|..+|.++-... .+..+.+...+.+++. ..+|.....
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~~~~~~~~~i~~l~~~--g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------APSAEAEAAIRELESA--GARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------GGSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------CccHHHHHHHHHHHhC--CCceeeecc
Confidence 578886 999999999999999999999874332 2334555667777765 445554433
No 486
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=85.68 E-value=5.4 Score=41.94 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=28.7
Q ss_pred CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259 41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD 73 (328)
Q Consensus 41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d 73 (328)
.+|.|||+|.+|..+++.|...|. .+++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 579999999999999999999995 368888753
No 487
>PRK06198 short chain dehydrogenase; Provisional
Probab=85.67 E-value=2.4 Score=37.83 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=30.8
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+ ++++|+|.| .|++|..+++.|+..|..++.+++.+
T Consensus 4 ~-~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 L-DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred C-CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 5 578899998 58999999999999998668888753
No 488
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=85.64 E-value=3.8 Score=39.65 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=50.2
Q ss_pred cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259 39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC 117 (328)
Q Consensus 39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~ 117 (328)
+..+|.|+|+ |.+|.|+++.|..-...+|+.+-.+ ...|+. +...+|.+.-... .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~~--------i~~~~~~l~~~~~-~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQS--------FGSVFPHLITQDL-P 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCCC--------chhhCccccCccc-c
Confidence 3679999995 7899999999988755677776422 222321 1112222211000 0
Q ss_pred ccCCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259 118 RIEDKDISFYNDFNIIVLGLDSIEARSYINA 148 (328)
Q Consensus 118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~ 148 (328)
.+.+.....+++.|+|+.|+.+...+.++..
T Consensus 93 ~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~ 123 (381)
T PLN02968 93 NLVAVKDADFSDVDAVFCCLPHGTTQEIIKA 123 (381)
T ss_pred ceecCCHHHhcCCCEEEEcCCHHHHHHHHHH
Confidence 1112222334889999999988666665555
No 489
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=85.64 E-value=1.3 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=32.7
Q ss_pred HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
.| ...+|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 251 ~L-aGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MI-AGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred Cc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 46 68999999999999999999999998 688887654
No 490
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=85.62 E-value=1.3 Score=40.22 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=30.0
Q ss_pred cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259 42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI 75 (328)
Q Consensus 42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v 75 (328)
.|+|||+|..|..+|..|++.|+ +++++|.+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999999 7999997753
No 491
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=85.61 E-value=2.4 Score=40.69 Aligned_cols=64 Identities=28% Similarity=0.377 Sum_probs=41.6
Q ss_pred EEEEcCChHHHHHHHHH--HHhCCCeEEEEeCCccC--ccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259 43 ILVVGAGGLGCELLKDL--ALSGFKNLEVIDMDRIE--VSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP 114 (328)
Q Consensus 43 VliiG~gglG~evaknL--~l~Gvg~itlvD~d~v~--~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~ 114 (328)
|+|||+|..|..+|..| ...|. ++.|+|...-. ..|-... +-..+++. ..+.+....+...|..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~--~~~~~~~~-----~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWC--FWEKDLGP-----LDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccc--cccccccc-----hHHHHheecCceEEEe
Confidence 79999999999999999 77776 89999976544 4444222 23334444 3334444445555444
No 492
>PRK06847 hypothetical protein; Provisional
Probab=85.53 E-value=1.2 Score=42.24 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 4679999999999999999999999 689998653
No 493
>PRK14031 glutamate dehydrogenase; Provisional
Probab=85.50 E-value=3.5 Score=40.64 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=32.0
Q ss_pred HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
| ++.+|+|.|.|-+|+..|+.|...|..-+.+-|.+
T Consensus 226 l-~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 226 L-KGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred c-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 7 68999999999999999999999999777777743
No 494
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.47 E-value=5 Score=35.36 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=27.6
Q ss_pred CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
..+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~ 39 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARS 39 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788888 59999999999999998 78887743
No 495
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.42 E-value=1.9 Score=38.82 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=30.0
Q ss_pred HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
+ ++.+++|.| .|++|.++++.|+..|. +++++|.+
T Consensus 4 ~-~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 4 L-AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred C-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5 578899998 59999999999999998 78888754
No 496
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=85.38 E-value=1.2 Score=44.05 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.8
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d 73 (328)
...|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~ 71 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGI-ETFLIERK 71 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 5679999999999999999999998 68888865
No 497
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=85.29 E-value=4.5 Score=40.17 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=59.2
Q ss_pred cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC--CCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259 39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF--RMEDVGKPKAEVAAKRVMERVSGVNIVPHF 116 (328)
Q Consensus 39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~--~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~ 116 (328)
...+|.+||+|+-|-..+--|+++|+ .+|+++...-. -++- .| ..--+.+.=++-..+.|.+.+ +++....
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~---GGll-~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~~~~ 194 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALD---GGLL-LYGIPDFKLPKDILDRRLELLERSG--VEFKLNV 194 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCC---ceeE-EecCchhhccchHHHHHHHHHHHcC--eEEEEcc
Confidence 46899999999999999999999998 78887643321 1111 12 222223344556666777765 5554432
Q ss_pred ccc-CCcchhhhccCCEEEecCCC
Q 020259 117 CRI-EDKDISFYNDFNIIVLGLDS 139 (328)
Q Consensus 117 ~~~-~~~~~~~~~~~dvVi~~~d~ 139 (328)
..= +-..+++.+.||.|+.|+..
T Consensus 195 ~vG~~it~~~L~~e~Dav~l~~G~ 218 (457)
T COG0493 195 RVGRDITLEELLKEYDAVFLATGA 218 (457)
T ss_pred eECCcCCHHHHHHhhCEEEEeccc
Confidence 211 22246667888999887654
No 498
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=85.27 E-value=1.3 Score=42.67 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=30.6
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence 4789999999999999999999999 588888665
No 499
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=85.25 E-value=1.3 Score=42.65 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR 74 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~ 74 (328)
..+|+|||+|..|...|..|.+.|+ +++|+|...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 4689999999999999999999999 689998665
No 500
>PLN02256 arogenate dehydrogenase
Probab=85.17 E-value=1.4 Score=41.25 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=28.1
Q ss_pred CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259 40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM 72 (328)
Q Consensus 40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~ 72 (328)
..+|.|||+|.+|..+++.|...|. +++.+|.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 5689999999999999999999885 7888774
Done!