Query 020260
Match_columns 328
No_of_seqs 129 out of 174
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5s_A Gilaa.00834.A, macropha 34.5 52 0.0018 26.8 4.9 86 42-128 17-122 (135)
2 3fwu_A Macrophage migration in 33.0 35 0.0012 27.8 3.7 90 39-128 13-122 (133)
3 3fwt_A Macrophage migration in 31.7 52 0.0018 26.7 4.5 89 40-128 14-122 (133)
4 4dh4_A MIF; trimer, isomerase; 28.9 81 0.0028 24.4 5.0 77 52-128 7-101 (114)
5 2rp4_A Transcription factor P5 27.9 25 0.00087 26.6 1.7 25 268-297 8-32 (76)
6 3nbm_A PTS system, lactose-spe 25.6 38 0.0013 26.9 2.4 32 181-216 56-87 (108)
7 3hhl_A RPA0582; alpha-beta-bar 25.1 37 0.0013 28.4 2.4 22 195-216 10-31 (143)
8 3l9k_W Dynein intermediate cha 23.0 91 0.0031 20.6 3.5 27 53-80 8-34 (38)
9 1vq8_K 50S ribosomal protein L 14.2 1.2E+02 0.004 25.3 3.1 33 206-240 91-123 (132)
10 3qua_A Putative uncharacterize 13.7 1.1E+02 0.0039 26.7 3.1 34 178-215 118-155 (199)
No 1
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=34.53 E-value=52 Score=26.84 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCC-CCCc--c------hhhhh-----hhH
Q 020260 42 DNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPEL-NPEM--D------VYRIG-----TLM 105 (328)
Q Consensus 42 ~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPeL-~~e~--D------~yri~-----t~~ 105 (328)
-.-..||. .+. |+|.+.+.++.|.+++.+++..++.-....+.|.++ +.- ...+ | +.-+| ...
T Consensus 17 ~~~~~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~ 95 (135)
T 3t5s_A 17 QGPGSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNP 95 (135)
T ss_dssp ----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCH
T ss_pred cCCCCcceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCc
Confidence 34456887 444 899999988999999999999999888888888888 542 1111 1 11122 245
Q ss_pred HHHHHHHHHHhc----CCCeeEEEeeC
Q 020260 106 ELVRVIALSFAD----DGKRVKVCVQG 128 (328)
Q Consensus 106 ~lar~~~~~l~~----~g~rvkI~fPD 128 (328)
+++..|+..|.+ ...|+-|.|-|
T Consensus 96 ~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 96 SISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred hHHHHHHHHHHHhcccCccEEEEEecc
Confidence 788888888853 34688999988
No 2
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=33.04 E-value=35 Score=27.81 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=58.2
Q ss_pred cccCCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhhh-----
Q 020260 39 SSQDNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRIG----- 102 (328)
Q Consensus 39 ~~~~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPe-L~~e~--D------~yri~----- 102 (328)
........||. .+. |++.+.+.++.|.+++.+++..++.-....+.|.++=.. +--.+ | +.-+|
T Consensus 13 ~~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e 92 (133)
T 3fwu_A 13 GLVPRGSHMPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPS 92 (133)
T ss_dssp --------CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTT
T ss_pred CCCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHH
Confidence 34455667997 444 999999999889999999999999888778777777432 11111 1 11122
Q ss_pred hhHHHHHHHHHHHhc----CCCeeEEEeeC
Q 020260 103 TLMELVRVIALSFAD----DGKRVKVCVQG 128 (328)
Q Consensus 103 t~~~lar~~~~~l~~----~g~rvkI~fPD 128 (328)
...+++..|+..|.+ ...|+-|.|-|
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 93 EPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 355788888888853 34688899988
No 3
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=31.66 E-value=52 Score=26.73 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=59.1
Q ss_pred ccCCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhhh-----h
Q 020260 40 SQDNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRIG-----T 103 (328)
Q Consensus 40 ~~~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPe-L~~e~--D------~yri~-----t 103 (328)
..-....||. .+. |++.+.+.++.|.+++.+++..++.-....+-|.++=+. +-..+ | +.-+| .
T Consensus 14 ~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~ 93 (133)
T 3fwt_A 14 LVPRGSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSK 93 (133)
T ss_dssp ----CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHH
T ss_pred cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHH
Confidence 3444556887 444 899999888999999999999999888888877776432 11111 1 11122 2
Q ss_pred hHHHHHHHHHHHhc----CCCeeEEEeeC
Q 020260 104 LMELVRVIALSFAD----DGKRVKVCVQG 128 (328)
Q Consensus 104 ~~~lar~~~~~l~~----~g~rvkI~fPD 128 (328)
..+++..|+..|.+ ...|+-|.|-|
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 45788888888753 34578888887
No 4
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=28.86 E-value=81 Score=24.41 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=53.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhhh-----hhHHHHHHHHHHHhc
Q 020260 52 NNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRIG-----TLMELVRVIALSFAD 117 (328)
Q Consensus 52 n~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEl~fPe-L~~e~--D------~yri~-----t~~~lar~~~~~l~~ 117 (328)
.|+|.+.+..+-|..++.+++..++.-...++.|.++-.. +-..+ | +.-+| ...+++..|++.|.+
T Consensus 7 TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~ 86 (114)
T 4dh4_A 7 CPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACER 86 (114)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3999988888889999999999999888888877776321 11111 1 11122 345788888887753
Q ss_pred ----CCCeeEEEeeC
Q 020260 118 ----DGKRVKVCVQG 128 (328)
Q Consensus 118 ----~g~rvkI~fPD 128 (328)
...|+-|.|-|
T Consensus 87 ~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 87 HLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHCCCGGGEEEEEEE
T ss_pred HhCcCcccEEEEEEe
Confidence 34588898887
No 5
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.89 E-value=25 Score=26.64 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.6
Q ss_pred cCCCceEEEEecCCCCCCceEEeeecCCCC
Q 020260 268 YPNGYELYKRVDVPSGGEKYVILSTFTEKP 297 (328)
Q Consensus 268 YPgpWqV~~~~~~~~g~g~Y~~v~~~~~RP 297 (328)
.|..|+|=+-.+ |.|+++-+.+.+-
T Consensus 8 ~p~dW~VsRt~d-----GdYrL~itcpkKe 32 (76)
T 2rp4_A 8 SAAEWNVSRTPD-----GDYRLAITCPNKE 32 (76)
T ss_dssp SSCCCEEECCTT-----TBEEEEEEESCHH
T ss_pred CCccceeeeccC-----CceEEEEEeCcHH
Confidence 589999999555 9999999987653
No 6
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=25.55 E-value=38 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=25.5
Q ss_pred EEEEeccCCCccccHHHHHHHHHHcCCCcEEEEcCC
Q 020260 181 FILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 181 ~Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (328)
+|++.||-. ..++++++.++.. +.||.++|+.
T Consensus 56 vvLLgPQV~---y~~~~ik~~~~~~-~ipV~vI~~~ 87 (108)
T 3nbm_A 56 LIILAPQVR---SYYREMKVDAERL-GIQIVATRGM 87 (108)
T ss_dssp EEEECGGGG---GGHHHHHHHHTTT-TCEEEECCHH
T ss_pred EEEEChHHH---HHHHHHHHHhhhc-CCcEEEeCHH
Confidence 467799876 2788888888766 8999999985
No 7
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=25.07 E-value=37 Score=28.36 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCcEEEEcCC
Q 020260 195 IDDMKAMTDAAGTRPVILINPR 216 (328)
Q Consensus 195 l~~ve~l~~~a~drPvVllNp~ 216 (328)
-++++++.+.-.++||+|+|.-
T Consensus 10 ~~~~~~~~~~~~~~pv~MlNLl 31 (143)
T 3hhl_A 10 KEVFAQFRANDREGPIHMLNLV 31 (143)
T ss_dssp HHHHHHHHHCCCSSCEEEEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEehh
Confidence 3677777777678999999963
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=23.00 E-value=91 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 020260 53 NIPHSREIRNYFYDDVLQATQRAVNDGR 80 (328)
Q Consensus 53 ~vP~~re~~~~f~~qA~~A~~~Al~dG~ 80 (328)
.|=+|-++.. |++.+.+-+++||.+..
T Consensus 8 ~I~~S~~F~~-F~~rsskviERAL~e~y 34 (38)
T 3l9k_W 8 MIILSENFQR-FVVRAGRVIERALSENV 34 (38)
T ss_dssp HHHTSHHHHH-HHHHHHHHHHHHHHHSS
T ss_pred HHhcCHHHHH-HHHHHHHHHHHHHcccc
Confidence 4456788877 99999999999998765
No 9
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=14.23 E-value=1.2e+02 Score=25.34 Aligned_cols=33 Identities=3% Similarity=0.193 Sum_probs=24.0
Q ss_pred CCCcEEEEcCCcCCCCCCcCccCchhhHHHHHhhh
Q 020260 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAA 240 (328)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lr~~Fl~ 240 (328)
.|--+||+|++.+-.. .-|.+..+|++|+.|..
T Consensus 91 ddNA~Vlin~~g~p~G--TrI~GPVarElr~~~~K 123 (132)
T 1vq8_K 91 EDNAAVIVDENEDPRG--TELKGPIAREVAQRFGS 123 (132)
T ss_dssp SSCEEEEECTTSCBSS--SCBCSEECHHHHHHSHH
T ss_pred CCceEEEECCCCCEeE--EEEEcCcCHHHHhcccH
Confidence 3566999999988766 33444788999987653
No 10
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=13.71 E-value=1.1e+02 Score=26.75 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=19.6
Q ss_pred CCEEEEEeccCCCccccHHHHHHHHHHc----CCCcEEEEcC
Q 020260 178 DDMFILVAPQNAVGNCIIDDMKAMTDAA----GTRPVILINP 215 (328)
Q Consensus 178 dd~~Ivv~P~~~v~~~el~~ve~l~~~a----~drPvVllNp 215 (328)
.|+| ++.|.-. | .++.+-++.... .++|||++|.
T Consensus 118 sda~-IalPGG~-G--TldEl~e~lt~~qlg~~~kPvvlln~ 155 (199)
T 3qua_A 118 SDAF-IALPGGI-G--TLEEFFEAWTAGYLGMHDKPLILLDP 155 (199)
T ss_dssp CSEE-EECSCCH-H--HHHHHHHHHHHHHTTSCCCCEEEECT
T ss_pred cCcc-EEeCCCc-c--HHHHHHHHHHHHHhccCCCCEEEEcC
Confidence 4554 4556554 2 555554443321 3799999996
Done!