BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020261
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312
S+ + LP+ + Q+ CV+C D+E + L VL C H +H++C++ WLK N
Sbjct: 2 SSGSSGQLPSYRFNPNNHQS-EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60
Query: 313 KVCPVCSAEVSTS 325
+ CP+C A+ S
Sbjct: 61 RTCPICRADSGPS 73
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
C +C D++ + L + CKH++H +C+ WL++ KVCP+C+ V
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
C IC E+GE + L C H +H C++ WL NK CP+C ++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312
S +++ LP + G C IC +Y G+ T L C H +H C++ WL+ +
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS 77
Query: 313 KVCPVC 318
CPVC
Sbjct: 78 GTCPVC 83
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
GS C +C+ DY GE++ L C H +H CI WL+ + CPVC ++
Sbjct: 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 278 CVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEV 322
C +C + EDGE L C H +H+EC++ WL + CP+C V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGHS 328
C+IC + + TL +C HS+ S CIN W+K CP+C ++ + +S
Sbjct: 56 CIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGHS 328
C+IC + + TL +C HS+ S CIN W+K CP+C ++ + +S
Sbjct: 67 CIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 114
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGHS 328
C+IC + + TL +C HS+ S CIN W+K CP+C ++ + +S
Sbjct: 56 CIICSEYFIEAVTL---NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
CV+C + D T ++ C HS+ CI +L+ +K CP+C +V
Sbjct: 18 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
CV+C + D T ++ C HS+ CI +L+ +K CP+C +V
Sbjct: 14 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 276 DSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAE 321
D+C+ C+ + + + + V C HS+H+ C++ W+K N CP+C +
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
CV+C + D T ++ C HS+ CI +L+ +K CP+C +V
Sbjct: 18 CVLCGGYFIDATT--IIECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81
Query: 321 E 321
E
Sbjct: 82 E 82
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 30 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 89
Query: 321 E 321
E
Sbjct: 90 E 90
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 276 DSCVICRLDYEDGETLTV-LSCKHSYHSECINNWLKINKVCPVCSAEVSTSGHS 328
+ C IC ED ++ L C H++ CI W++ N CP+C V + H+
Sbjct: 6 ERCPIC---LEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 38 DNCAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97
Query: 321 E 321
E
Sbjct: 98 E 98
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 40 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 99
Query: 321 E 321
E
Sbjct: 100 E 100
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 248 ESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGE----TLTVLSCKHSYHSE 303
E + +A L V +N D C+ C+ + T+ C H++H
Sbjct: 32 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFH 91
Query: 304 CINNWLKINKVCPV 317
CI+ WLK +VCP+
Sbjct: 92 CISRWLKTRQVCPL 105
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGHS 328
C IC DG +L C HS+ +CI+ W ++ CP+C +++ + S
Sbjct: 18 CCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97
Query: 321 E 321
E
Sbjct: 98 E 98
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 276 DSCVICRLDYED-------------GETLTVL--SCKHSYHSECINNWLKINKVCPVCSA 320
D+C ICR D E TV C H++H CI+ WLK +VCP+ +
Sbjct: 32 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 91
Query: 321 E 321
E
Sbjct: 92 E 92
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.063, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 273 GSNDSCVICRLDY----EDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
G+ SC IC Y ++G + C H + S+C+ + LK CP C +++
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 34.3 bits (77), Expect = 0.093, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 277 SCVICRLDY----EDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
SC IC Y ++G + C H + S+C+ + LK CP C +++
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 277 SCVICRLDY----EDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
SC IC Y ++G + C H + S+C+ + LK CP C +++
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 267 GGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INK---VCPVC 318
G + +G D C +CR + G+ L +C YH +C++ LK I K +CP C
Sbjct: 1 GSSGSSGHEDFCSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECIN---------NWLKINKVCPVCS 319
GS+ CR+ + GE L +C SYH C+N WL CP C+
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL-----CPRCT 54
>pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GED|B Chain B, Fingerprint And Structural Analysis Of A Apo Scor Enzyme
From Clostridium Thermocellum
pdb|3GEG|A Chain A, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
pdb|3GEG|B Chain B, Fingerprint And Structural Analysis Of A Scor Enzyme With
Its Bound Cofactor From Clostridium Thermocellum
Length = 247
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 239 LALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV---LS 295
+A G + +E + + + A +P K GT ++ SN +C+ D+ GET+ V +S
Sbjct: 173 IAPGWINVTEQQEFTQEDCAAIPA--GKVGTPKDISNMVLFLCQQDFITGETIIVDGGMS 230
Query: 296 CKHSYHSECINNWL-KINK 313
+ YH + NW KI+K
Sbjct: 231 KRMIYHGDW--NWFYKIDK 247
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 291 LTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
+ + C H+Y S CI +L CP C V+
Sbjct: 36 MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INK---VCPVCSAEV 322
D C +CR + G+ L +C YH +C++ LK I K +CP C ++
Sbjct: 6 DFCSVCR---KSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 275 NDSCVICRLDYEDGETLT-VLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
+ C IC D + VL C H H C LK CP+CS S
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 271 QNGSNDSCVICRLDYEDGETLT-VLSCKHSYHSECINNWLKINKVCPVC 318
+N S +C IC D + VL C H H C LK CP+C
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 277 SCVICRLDY----EDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
SC IC Y ++G + C H + S+C+ + LK CP C ++
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 277 SCVICRLDY----EDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
SC IC Y ++G + C H + S+C+ + LK CP C ++
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.127 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,523,034
Number of Sequences: 62578
Number of extensions: 265158
Number of successful extensions: 453
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 49
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)