BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020261
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 211/274 (77%), Gaps = 18/274 (6%)
Query: 52 QDSRTRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNNEGSDYGSWEAGSYLHDEDDD 111
+ S R PFTNLSQ+DADLALARTLQEQERAYMML MN+ E SDYGSWE GSY++DED+
Sbjct: 80 RSSSARVPFTNLSQIDADLALARTLQEQERAYMMLTMNS-EISDYGSWETGSYVYDEDEF 138
Query: 112 FGGDGDDDDDDDDEDESDAGDHENHECDGSDFVIDDDDEDEDAFDVHAHEEVEEDNNPSV 171
+ +D+DDD+DE E+D E DG D +VHA+E+ +ED+ S
Sbjct: 139 DDPENEDEDDDEDEYETDDDPQE----DGLDV------------NVHANEDDQEDDGNS- 181
Query: 172 EYDSDVFSSDEAYARALQDAEERDMAARLLALAEIHDREIEDPEDHGGHSQDTWEEVDPD 231
+ + ++ DEAYARALQ+AEERDMAARL AL+ + +R +ED ED SQD W+E+DPD
Sbjct: 182 DIEEVAYTDDEAYARALQEAEERDMAARLSALSGLANRVVEDLEDESHTSQDAWDEMDPD 241
Query: 232 ELSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETL 291
ELSYEELLALG++VG+ESRGLSADT+A+LP+ YK G +QNG+N+SCVICRLDYED E L
Sbjct: 242 ELSYEELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDL 301
Query: 292 TVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325
+L CKHSYHSECINNWLKINKVCPVCSAEVSTS
Sbjct: 302 ILLPCKHSYHSECINNWLKINKVCPVCSAEVSTS 335
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 222 QDTWEE-VDPDELSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGT--SQNGSNDSC 278
Q +W++ +DPD ++YEEL+ LGE VG+ESRGLS + + TLPT YK G+ S+ + + C
Sbjct: 138 QVSWQDDIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERC 197
Query: 279 VICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
VIC+L Y+ GE L CKH YHSECI+ WL INKVCPVC++EV
Sbjct: 198 VICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV 293
YE LL L E +G ++ RGL+ + LP+ + Q+ CV+C D+E + L V
Sbjct: 420 YEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQS-EQTLCVVCMCDFESRQLLRV 478
Query: 294 LSCKHSYHSECINNWLKINKVCPVCSAEVS 323
L C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 479 LPCNHEFHAKCVDKWLKANRTCPICRADAS 508
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDS-CVICRLDYEDGETLT 292
YE LL L E +G ++ RGL+ + LP+ Y+ S + S + CV+C D+E + L
Sbjct: 423 YEALLNLAERLGEAKPRGLTKADIEQLPS--YRFNPSNHQSEQTLCVVCMCDFESRQLLR 480
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVS 323
VL C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 481 VLPCNHEFHAKCVDKWLKGNRTCPICRADAS 511
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV 293
YE LL L E +G ++ RGL+ + LP+ + + Q+ CV+C D+E + L V
Sbjct: 337 YEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEARQLLRV 395
Query: 294 LSCKHSYHSECINNWLKINKVCPVCSAEVS 323
L C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 396 LPCNHEFHTKCVDKWLKANRTCPICRADAS 425
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV 293
YE LL L E +G ++ RGL+ + LP+ + Q+ CV+C D+E + L V
Sbjct: 353 YEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQS-EQTLCVVCFSDFESRQLLRV 411
Query: 294 LSCKHSYHSECINNWLKINKVCPVCSAEVS 323
L C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 412 LPCNHEFHAKCVDKWLKTNRTCPICRADAS 441
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV 293
YE LL L E +G ++ RGL+ + LP+ + + Q+ CV+C D+E + L V
Sbjct: 312 YEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRV 370
Query: 294 LSCKHSYHSECINNWLKINKVCPVCSAEVS 323
L C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 371 LPCNHEFHAKCVDKWLKANRTCPICRADAS 400
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 235 YEELLALGEVVG-SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTV 293
YE LL L E +G ++ RGL+ + LP+ + + Q+ CV+C D+E + L V
Sbjct: 255 YEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS-EQTLCVVCFSDFEVRQLLRV 313
Query: 294 LSCKHSYHSECINNWLKINKVCPVCSAEVS 323
L C H +H++C++ WLK N+ CP+C A+ S
Sbjct: 314 LPCNHEFHAKCVDKWLKANRTCPICRADAS 343
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 234 SYEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGTSQNG-----------SNDSCVI 280
SYEELL L + +G+ +RG +T+ T P YK Q+G +++ C I
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPH-KYKKRRPQDGKGKKDEGEESDTDEKCTI 296
Query: 281 CRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C EDGE + L C H +H C++ WL ++K CP+C ++ T
Sbjct: 297 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 234 SYEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGTSQ--NGSND---------SCVI 280
SYEELL L + +G+ +RG +T+ T P YK Q G D C I
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPH-KYKKRRPQDSKGKKDEGEESDTDEKCTI 297
Query: 281 CRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C EDGE + L C H +H C++ WL ++K CP+C ++ T
Sbjct: 298 CLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 341
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKG----DEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKGDEY----DVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 233 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLT 292
LS + L E + RGL+ + + L T NY +N + +C +C +Y +G L
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNY----GENDALKTCSVCITEYTEGNKLR 717
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGH 327
L C H YH CI+ WL N CP+C V +G+
Sbjct: 718 KLPCSHEYHIHCIDRWLSENSTCPICRRAVLVAGN 752
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKGDEY----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKGDEY----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKGDEY----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 233 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLT 292
LS + L E + RGL+ + + L T N+ +N + +C +C +Y +G L
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNF----GENDALKTCSVCITEYTEGNKLR 599
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGH 327
L C H YH CI+ WL N CP+C V +G+
Sbjct: 600 KLPCSHEYHVHCIDRWLSENSTCPICRRAVLVAGN 634
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 255 DTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KINK 313
D L LP +K G D C IC +YEDG+ L +L C H+YH +C++ WL K K
Sbjct: 221 DQLKKLPVHKFKKG----DEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276
Query: 314 VCPVCSAEVSTS 325
CPVC +V S
Sbjct: 277 TCPVCKQKVVPS 288
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 233 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLT 292
LS + L E + RGL+ + + L T N+ +N + +C +C +Y +G L
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDNLSTRNF----GENDALKTCSVCITEYTEGNKLR 582
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEV 322
L C H YH CI+ WL N CP+C V
Sbjct: 583 KLPCSHEYHIHCIDRWLSENSTCPICRRAV 612
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 247 SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSECI 305
S ++G+ L LP VNY + G + CVIC D+ GE L VL C H +H CI
Sbjct: 99 SVNKGIKKKALKMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCI 158
Query: 306 NNWLKINKVCPVC 318
+ WL + CP C
Sbjct: 159 DKWLTQHMTCPKC 171
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 252 LSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-K 310
L+ + L +PT +Y+ G D C IC +YEDG+ L VL C H+YHS C++ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDQY----DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQ 263
Query: 311 INKVCPVCSAEV 322
K CP+C V
Sbjct: 264 TRKTCPICKQPV 275
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 233 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLT 292
LS + L E + RGL+ + + L ++ +N + +C +C +Y +G L
Sbjct: 505 LSLAQFFLLNEDDEDQPRGLTKEQIDNLAMRSF----GENDALKTCSVCITEYTEGNKLR 560
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGH 327
L C H YH CI+ WL N CP+C V +SG+
Sbjct: 561 KLPCSHEYHVHCIDRWLSENSTCPICRRAVLSSGN 595
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 233 LSYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLT 292
LS + L E + RGL+ + + L ++ +N + +C +C +Y +G L
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNLAMRSF----GENDALKTCSVCITEYTEGNKLR 584
Query: 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVSTSGH 327
L C H YH CI+ WL N CP+C V SG+
Sbjct: 585 KLPCSHEYHVHCIDRWLSENSTCPICRRAVLASGN 619
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 247 SESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSECI 305
S RGL + + +LP Y Q N+ CVIC D+E+GET+ V+ C H +H +C+
Sbjct: 111 SFRRGLDSQAVRSLPVYRYTKAAKQR--NEDCVICLSDFEEGETVKVIPHCGHVFHVDCV 168
Query: 306 NNWLKINKVCPVC 318
+ WL CP+C
Sbjct: 169 DTWLSSYVTCPLC 181
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 252 LSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-K 310
L+ + L +PT +Y+ G D C IC +YEDG+ L VL C H+YHS C++ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEY----DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQ 263
Query: 311 INKVCPVCSAEV 322
K CP+C V
Sbjct: 264 TRKTCPICKQPV 275
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 249 SRGLSADTLATLPTVNYKGGTSQNGSNDS--CVICRLDYEDGETLTVLS-CKHSYHSECI 305
+RGL A+T+ T PT Y +Q + C IC ++ED ETL +L C H +H CI
Sbjct: 93 ARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCI 152
Query: 306 NNWLKINKVCPVCSAEVS 323
WL+ + CPVC ++
Sbjct: 153 GAWLQGHVTCPVCRTNLA 170
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 252 LSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-K 310
L+ + L +PT +Y+ G D C IC +YEDG+ L +L C H+YHS C++ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEY----DVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQ 263
Query: 311 INKVCPVCSAEV 322
K CP+C V
Sbjct: 264 TRKTCPICKQPV 275
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 242 GEVVGSE--SRGLSADTLATLPTVNY---KGGTSQNGSNDSCVICRLDYEDGETLTVLS- 295
GEV + SRGL D + + P+ Y KG G + C IC ++ED ETL ++
Sbjct: 88 GEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVE-CAICLNEFEDEETLRLMPP 146
Query: 296 CKHSYHSECINNWLKINKVCPVCSAEV 322
C H++H+ CI+ WL CPVC A +
Sbjct: 147 CSHAFHASCIDVWLSSRSTCPVCRASL 173
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 248 ESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSECIN 306
E+ GL + + P +Y T +N + C IC ++ D +T+ +++ C+H +HS CI+
Sbjct: 74 ENTGLDPFIIRSFPVFHYSSATKKNHGTE-CAICLSEFSDEDTVRLITVCRHPFHSNCID 132
Query: 307 NWLKINKVCPVCSAEV 322
W +++K CPVC E+
Sbjct: 133 LWFELHKTCPVCRCEL 148
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 246 GSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSEC 304
GS ++G+ L P V+Y + G ++ CVIC D+ GE L +L C H +H C
Sbjct: 103 GSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRC 162
Query: 305 INNWLKINKVCPVC 318
I+ WL+ + CP C
Sbjct: 163 IDKWLQQHLTCPKC 176
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 236 EELLALGEVVGSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS 295
E + L GS ++G++ L P V+Y + G + CVIC D+ GE + +L
Sbjct: 94 EPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLP 153
Query: 296 -CKHSYHSECINNWLKINKVCPVC 318
C H +H CI+ WL+ + CP C
Sbjct: 154 KCHHGFHVRCIDKWLQQHLTCPKC 177
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 245 VGSESRGLSADTLATLPTVNYKGGTSQNGSNDS--CVICRLDYEDGETLTVLS-CKHSYH 301
V + +RGL + T PT Y +Q C IC ++ED ETL +L C H +H
Sbjct: 93 VNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFH 152
Query: 302 SECINNWLKINKVCPVCSAEVS 323
CI+ WL+ + CPVC A ++
Sbjct: 153 PHCIDAWLEAHVTCPVCRANLA 174
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 248 ESRGLSADTLATLPTVNYKGGTSQNGSNDS--CVICRLDYEDGETLTVLS-CKHSYHSEC 304
++RGL A + T PT Y + ++ C +C ++ED ETL ++ C H +H C
Sbjct: 112 QARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGC 171
Query: 305 INNWLKINKVCPVCSAEV 322
I+ WL+ + CP+C A++
Sbjct: 172 IDAWLRSHTTCPLCRADL 189
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 250 RGLSADTLATLPTVNY---KGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSECI 305
RGL + + + PT Y KG G + C IC ++ED ETL + C H++H+ CI
Sbjct: 93 RGLEKEVIESFPTFLYSEVKGLKIGKGGVE-CAICLSEFEDQETLRWMPPCSHTFHANCI 151
Query: 306 NNWLKINKVCPVCSAEVS 323
+ WL CPVC A +S
Sbjct: 152 DVWLSSWSTCPVCRANLS 169
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 230 PDELSYEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGT----------SQNGSNDS 277
P ++EEL+ L E +G+ +RG S T+ T P K T Q+G
Sbjct: 848 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAP 907
Query: 278 -------CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C IC E+GE + L C H +H C++ WL NK CP+C ++ T
Sbjct: 908 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 961
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312
S + +LP V Q + C +C L++E+GET+ L C+H +HS CI WL
Sbjct: 56 SKKVVESLPKVTV--TPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKT 113
Query: 313 KVCPVCSAEVST 324
CP+C E+ T
Sbjct: 114 NSCPLCRHELPT 125
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312
S + LP VN ++ N + C +C D+E+G + CKH YH +C+ WL+++
Sbjct: 200 SKSAIEALPLVNITK-SNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELH 258
Query: 313 KVCPVCSAEVST 324
CPVC E+ T
Sbjct: 259 NSCPVCRHELPT 270
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 250 RGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL 309
RGL+ + + L T +Y+ + + C +C DY G L L C H +H CI+ WL
Sbjct: 604 RGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWL 663
Query: 310 KINKVCPVCSAEV 322
N CP+C V
Sbjct: 664 SENCTCPICRQPV 676
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 230 PDELSYEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGT----------SQNGSNDS 277
P ++EEL+ L E +G+ +RG S T+ T P K T Q+G +
Sbjct: 840 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAT 899
Query: 278 -------CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C IC E+GE + L C H +H C++ WL NK CP+C ++ T
Sbjct: 900 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 953
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 17/84 (20%)
Query: 249 SRGLSADTLATLPTVNY---------KGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKH 298
+RGL A+ + T PT Y KGG C +C ++ED ETL ++ C H
Sbjct: 104 ARGLDAEAIETFPTFLYSEVKAVRIGKGGVE-------CAVCLCEFEDDETLRLMPPCCH 156
Query: 299 SYHSECINNWLKINKVCPVCSAEV 322
+H++C++ WL + CP+C A++
Sbjct: 157 VFHADCVDVWLSEHSTCPLCRADL 180
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 247 SESRGLSADTLATLPTVNYK------GGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHS 299
S ++GL L +LP + G ++ G + C IC D+ DGE + VL C HS
Sbjct: 65 SPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHS 124
Query: 300 YHSECINNWLKINKVCPVC 318
+H ECI+ WL CP C
Sbjct: 125 FHVECIDKWLVSRSSCPSC 143
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 230 PDELSYEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGT----------SQNGSNDS 277
P ++EEL+ L E +G+ +RG S T+ T P K T Q+G +
Sbjct: 835 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEAT 894
Query: 278 -------CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C IC E+GE + L C H +H C++ WL NK CP+C ++ T
Sbjct: 895 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 948
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 235 YEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGT----------SQNGSNDS----- 277
+EEL+ L E +G+ +RG S T+ T P K T Q+G
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 278 --CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324
C IC E+GE + L C H +H C++ WL NK CP+C ++ T
Sbjct: 869 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIDT 917
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 235 YEELLALGEVVGSESRGLSADTL--ATLPTVNYKG----------GTSQNGSNDSCVICR 282
+EEL+ L E +G+ +RG S T+ T P YK ++ + + C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPH-KYKKRKLHCKQDGEEGTEEDTEEKCTICL 938
Query: 283 LDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
E+GE + L C H +H C++ WL NK CP+C ++
Sbjct: 939 SILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 234 SYEELLALGEVVGSESRGLSADTLATLPTVNYKGGTS--QNGSNDSCVICRLDYEDGETL 291
++EEL ++ + GS +GL+ D + +P + G + +G+ DSC +C D++ GET+
Sbjct: 147 TFEELSSIFDTGGS--KGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 292 TVLS-CKHSYHSECINNWLKINKVCPVC 318
L C H +H CI+NWL + CP+C
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMC 232
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 250 RGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNW 308
+G+ L P V+Y + G + CVIC D+ GE L +L C H +H CI+ W
Sbjct: 107 KGIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKW 166
Query: 309 LKINKVCPVC 318
L+ + CP C
Sbjct: 167 LQHHLTCPKC 176
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312
S + LPTV ++ N C +C ++EDG + + CKH +H +C+ WL+++
Sbjct: 192 SKSAIDALPTVKVTKDMLKSEMNQ-CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250
Query: 313 KVCPVCSAEVST 324
CPVC E+ T
Sbjct: 251 NSCPVCRFELPT 262
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Query: 235 YEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGTS------------------QNGS 274
+EEL+ L E +G+ +RG S T+ T P YK T+ + +
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPH-KYKKVTTDWFSQRKLHCKQDGEEGTEEDT 933
Query: 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
+ C IC E+GE + L C H +H C++ WL NK CP+C ++
Sbjct: 934 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 272 NGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
N + DSCVIC Y+ E + +L+CKH +H CI+ W+ + CP+C ++
Sbjct: 250 NPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDI 300
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Query: 235 YEELLALGEVVGSESRGLSADTL--ATLPTVNYKGGTS------------------QNGS 274
+EEL+ L E +G+ +RG S T+ T P YK T+ + +
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPH-KYKKVTTDWFSQRKLHCKQDGEEGTEEDT 938
Query: 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322
+ C IC E+GE + L C H +H C++ WL NK CP+C ++
Sbjct: 939 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,718,760
Number of Sequences: 539616
Number of extensions: 7178439
Number of successful extensions: 129371
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 1372
Number of HSP's that attempted gapping in prelim test: 56196
Number of HSP's gapped (non-prelim): 31918
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)