Query 020261
Match_columns 328
No_of_seqs 234 out of 1634
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:19:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 9.3E-18 2E-22 163.8 5.2 78 248-326 203-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 1.5E-15 3.2E-20 106.3 2.2 43 277-319 2-44 (44)
3 COG5540 RING-finger-containing 99.4 3.4E-13 7.3E-18 129.1 4.1 51 274-324 322-373 (374)
4 PHA02929 N1R/p28-like protein; 99.4 5E-13 1.1E-17 125.2 4.9 75 249-323 147-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 1.7E-12 3.7E-17 100.9 4.3 45 275-319 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 8E-12 1.7E-16 122.5 3.9 68 253-323 268-345 (491)
7 KOG0317 Predicted E3 ubiquitin 99.1 5.3E-11 1.2E-15 113.4 3.9 49 274-325 238-286 (293)
8 cd00162 RING RING-finger (Real 99.1 9.3E-11 2E-15 79.3 3.8 44 277-322 1-45 (45)
9 KOG0823 Predicted E3 ubiquitin 99.1 8.6E-11 1.9E-15 109.0 3.8 50 273-325 45-97 (230)
10 PLN03208 E3 ubiquitin-protein 99.0 1.7E-10 3.8E-15 105.0 4.8 48 274-324 17-80 (193)
11 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.4E-10 3E-15 83.3 3.1 45 276-323 3-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.4E-10 5.1E-15 78.2 3.2 39 278-318 1-39 (39)
13 smart00504 Ubox Modified RING 98.9 1.2E-09 2.7E-14 80.7 4.4 46 276-324 2-47 (63)
14 KOG0802 E3 ubiquitin ligase [P 98.9 5.2E-10 1.1E-14 115.6 2.4 49 275-323 291-341 (543)
15 PHA02926 zinc finger-like prot 98.9 1.1E-09 2.3E-14 101.6 3.6 50 274-323 169-230 (242)
16 PF15227 zf-C3HC4_4: zinc fing 98.9 1.2E-09 2.7E-14 76.5 2.9 38 278-318 1-42 (42)
17 KOG0320 Predicted E3 ubiquitin 98.9 1.3E-09 2.9E-14 97.8 3.7 51 273-324 129-179 (187)
18 PF12861 zf-Apc11: Anaphase-pr 98.9 1.9E-09 4E-14 86.5 3.7 49 275-323 21-82 (85)
19 smart00184 RING Ring finger. E 98.8 3.2E-09 7E-14 69.3 3.7 38 278-318 1-39 (39)
20 PF14634 zf-RING_5: zinc-RING 98.8 2.4E-09 5.3E-14 75.2 3.3 44 277-320 1-44 (44)
21 PF00097 zf-C3HC4: Zinc finger 98.8 2.5E-09 5.4E-14 73.2 2.8 39 278-318 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.8 4.2E-09 9.1E-14 105.3 3.3 48 274-324 25-72 (397)
23 KOG2930 SCF ubiquitin ligase, 98.7 6.9E-09 1.5E-13 85.8 1.5 51 272-322 43-107 (114)
24 KOG0287 Postreplication repair 98.5 3E-08 6.6E-13 96.7 1.8 48 275-325 23-70 (442)
25 COG5194 APC11 Component of SCF 98.5 8.4E-08 1.8E-12 76.1 3.7 48 276-323 21-81 (88)
26 KOG1493 Anaphase-promoting com 98.5 3E-08 6.4E-13 78.1 1.0 50 274-323 19-81 (84)
27 COG5574 PEX10 RING-finger-cont 98.5 5.2E-08 1.1E-12 92.2 2.6 49 274-325 214-264 (271)
28 KOG2164 Predicted E3 ubiquitin 98.5 7.6E-08 1.6E-12 98.0 3.0 47 275-324 186-237 (513)
29 KOG0828 Predicted E3 ubiquitin 98.5 5.6E-08 1.2E-12 98.6 1.9 50 275-324 571-635 (636)
30 PF13445 zf-RING_UBOX: RING-ty 98.4 1.7E-07 3.6E-12 66.3 2.9 38 278-316 1-43 (43)
31 PF04564 U-box: U-box domain; 98.4 1.4E-07 3E-12 73.1 2.5 47 275-324 4-51 (73)
32 KOG1734 Predicted RING-contain 98.4 1.1E-07 2.4E-12 90.4 2.1 50 274-323 223-281 (328)
33 smart00744 RINGv The RING-vari 98.4 2.7E-07 5.8E-12 66.8 3.4 42 277-319 1-49 (49)
34 COG5219 Uncharacterized conser 98.4 8.8E-08 1.9E-12 102.8 1.0 51 273-323 1467-1523(1525)
35 KOG2177 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 84.7 1.7 44 274-320 12-55 (386)
36 COG5432 RAD18 RING-finger-cont 98.3 2.3E-07 4.9E-12 89.2 2.4 47 274-323 24-70 (391)
37 KOG0804 Cytoplasmic Zn-finger 98.2 5E-07 1.1E-11 90.9 2.0 47 275-323 175-222 (493)
38 KOG4445 Uncharacterized conser 98.1 5.3E-07 1.1E-11 87.0 0.1 97 225-325 64-188 (368)
39 PF11793 FANCL_C: FANCL C-term 98.1 4.9E-07 1.1E-11 69.9 -0.3 49 276-324 3-67 (70)
40 KOG4265 Predicted E3 ubiquitin 98.0 3.5E-06 7.6E-11 82.8 3.2 47 274-323 289-336 (349)
41 KOG0825 PHD Zn-finger protein 98.0 1.3E-06 2.8E-11 92.7 -0.3 49 275-323 123-171 (1134)
42 KOG1039 Predicted E3 ubiquitin 97.9 4.6E-06 9.9E-11 82.4 2.3 50 274-323 160-221 (344)
43 KOG0311 Predicted E3 ubiquitin 97.9 2.1E-06 4.5E-11 84.4 -1.3 47 275-324 43-91 (381)
44 PF14835 zf-RING_6: zf-RING of 97.7 5.3E-06 1.1E-10 63.5 -0.6 44 276-323 8-51 (65)
45 KOG0978 E3 ubiquitin ligase in 97.7 1E-05 2.2E-10 85.9 0.9 50 274-326 642-692 (698)
46 KOG4159 Predicted E3 ubiquitin 97.6 3.6E-05 7.7E-10 77.5 3.0 47 274-323 83-129 (398)
47 KOG1428 Inhibitor of type V ad 97.4 9.2E-05 2E-09 82.9 3.7 75 250-324 3461-3545(3738)
48 KOG0297 TNF receptor-associate 97.4 7.5E-05 1.6E-09 74.9 2.6 49 274-325 20-69 (391)
49 KOG4692 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 72.4 3.3 49 273-324 420-468 (489)
50 PF11789 zf-Nse: Zinc-finger o 97.4 8.1E-05 1.8E-09 55.6 1.6 41 275-317 11-53 (57)
51 KOG1941 Acetylcholine receptor 97.4 5.9E-05 1.3E-09 75.3 0.9 46 275-320 365-413 (518)
52 KOG2660 Locus-specific chromos 97.3 4.8E-05 1E-09 74.3 0.0 49 274-324 14-62 (331)
53 KOG4172 Predicted E3 ubiquitin 97.3 7.2E-05 1.6E-09 55.7 0.5 46 275-323 7-54 (62)
54 COG5152 Uncharacterized conser 97.1 0.00018 3.9E-09 66.4 0.9 44 276-322 197-240 (259)
55 KOG1785 Tyrosine kinase negati 97.0 0.00023 5.1E-09 71.3 1.4 46 276-324 370-417 (563)
56 KOG2879 Predicted E3 ubiquitin 97.0 0.00067 1.4E-08 65.1 4.1 49 273-323 237-287 (298)
57 KOG1813 Predicted E3 ubiquitin 97.0 0.00024 5.2E-09 68.7 0.9 46 276-324 242-287 (313)
58 KOG3970 Predicted E3 ubiquitin 96.8 0.0009 2E-08 62.9 3.1 50 276-326 51-108 (299)
59 KOG1002 Nucleotide excision re 96.6 0.00076 1.6E-08 69.8 1.2 48 274-324 535-587 (791)
60 COG5236 Uncharacterized conser 96.6 0.0015 3.3E-08 64.6 3.2 64 256-322 42-107 (493)
61 KOG1571 Predicted E3 ubiquitin 96.6 0.001 2.2E-08 65.9 1.8 43 275-323 305-347 (355)
62 PF10367 Vps39_2: Vacuolar sor 96.4 0.0015 3.3E-08 52.5 1.7 32 274-306 77-108 (109)
63 KOG3039 Uncharacterized conser 96.3 0.0037 8.1E-08 59.5 3.5 51 275-325 221-272 (303)
64 PF05883 Baculo_RING: Baculovi 96.2 0.0028 6.1E-08 55.1 2.2 39 275-313 26-70 (134)
65 PF12906 RINGv: RING-variant d 96.2 0.0033 7.2E-08 45.0 2.2 40 278-318 1-47 (47)
66 KOG0827 Predicted E3 ubiquitin 96.2 0.00028 6.1E-09 70.4 -4.5 51 275-325 196-247 (465)
67 PHA03096 p28-like protein; Pro 96.2 0.0022 4.8E-08 62.1 1.6 44 276-319 179-230 (284)
68 KOG1814 Predicted E3 ubiquitin 96.1 0.0028 6.2E-08 63.8 2.2 46 275-320 184-237 (445)
69 PF14447 Prok-RING_4: Prokaryo 96.1 0.0028 6.1E-08 47.2 1.5 47 275-326 7-53 (55)
70 KOG0801 Predicted E3 ubiquitin 96.1 0.0021 4.6E-08 57.7 0.8 28 275-302 177-204 (205)
71 KOG4275 Predicted E3 ubiquitin 96.0 0.0023 5E-08 62.1 0.6 42 275-323 300-342 (350)
72 PF04641 Rtf2: Rtf2 RING-finge 95.9 0.008 1.7E-07 57.1 3.8 50 274-324 112-162 (260)
73 PF14570 zf-RING_4: RING/Ubox 95.8 0.0065 1.4E-07 44.1 2.1 45 278-322 1-47 (48)
74 COG5222 Uncharacterized conser 95.7 0.0086 1.9E-07 58.5 3.3 42 276-320 275-318 (427)
75 KOG3268 Predicted E3 ubiquitin 95.5 0.0088 1.9E-07 54.6 2.3 50 276-325 166-230 (234)
76 KOG2114 Vacuolar assembly/sort 95.4 0.0068 1.5E-07 65.7 1.8 43 276-323 841-883 (933)
77 KOG2034 Vacuolar sorting prote 95.3 0.0089 1.9E-07 65.1 2.1 35 274-309 816-850 (911)
78 PHA02825 LAP/PHD finger-like p 95.3 0.018 3.8E-07 51.6 3.6 46 274-323 7-59 (162)
79 KOG0826 Predicted E3 ubiquitin 95.2 0.015 3.3E-07 57.2 3.3 46 274-322 299-345 (357)
80 KOG3002 Zn finger protein [Gen 95.2 0.011 2.4E-07 57.7 2.3 43 275-324 48-92 (299)
81 PHA02862 5L protein; Provision 95.1 0.017 3.6E-07 51.1 2.7 46 276-323 3-53 (156)
82 PF08746 zf-RING-like: RING-li 95.0 0.0098 2.1E-07 41.9 0.8 41 278-318 1-43 (43)
83 PF06524 NOA36: NOA36 protein; 94.8 0.037 8E-07 53.2 4.5 7 101-107 266-272 (314)
84 KOG1001 Helicase-like transcri 94.8 0.011 2.4E-07 63.4 1.2 44 276-323 455-500 (674)
85 KOG1952 Transcription factor N 94.8 0.017 3.8E-07 62.7 2.6 47 274-320 190-244 (950)
86 KOG1940 Zn-finger protein [Gen 94.7 0.016 3.5E-07 56.0 1.8 45 276-320 159-204 (276)
87 PF10272 Tmpp129: Putative tra 94.4 0.054 1.2E-06 54.2 4.9 29 296-324 311-352 (358)
88 KOG0298 DEAD box-containing he 94.0 0.016 3.4E-07 65.4 0.1 46 275-322 1153-1198(1394)
89 KOG2932 E3 ubiquitin ligase in 93.5 0.032 6.9E-07 54.8 1.2 43 277-323 92-134 (389)
90 PF03854 zf-P11: P-11 zinc fin 92.8 0.038 8.2E-07 40.2 0.5 44 277-325 4-48 (50)
91 COG5175 MOT2 Transcriptional r 92.7 0.076 1.6E-06 52.9 2.5 49 274-322 13-63 (480)
92 KOG2817 Predicted E3 ubiquitin 92.6 0.1 2.2E-06 52.6 3.3 49 274-322 333-384 (394)
93 PF05290 Baculo_IE-1: Baculovi 92.0 0.12 2.5E-06 45.2 2.6 50 275-326 80-135 (140)
94 KOG3161 Predicted E3 ubiquitin 91.8 0.051 1.1E-06 57.8 0.2 43 276-321 12-55 (861)
95 KOG0309 Conserved WD40 repeat- 91.5 0.1 2.2E-06 56.5 2.0 41 276-317 1029-1069(1081)
96 KOG4362 Transcriptional regula 91.4 0.043 9.4E-07 58.7 -0.8 47 275-324 21-70 (684)
97 KOG0825 PHD Zn-finger protein 91.4 0.083 1.8E-06 57.3 1.1 51 275-325 96-156 (1134)
98 PF07800 DUF1644: Protein of u 90.6 0.3 6.6E-06 43.8 3.8 35 275-309 2-46 (162)
99 PF04931 DNA_pol_phi: DNA poly 90.6 0.3 6.6E-06 53.2 4.6 16 176-191 733-748 (784)
100 KOG1100 Predicted E3 ubiquitin 90.4 0.14 2.9E-06 47.6 1.5 41 278-325 161-202 (207)
101 COG5183 SSM4 Protein involved 90.2 0.24 5.2E-06 54.1 3.3 49 274-323 11-66 (1175)
102 KOG1812 Predicted E3 ubiquitin 90.1 0.11 2.5E-06 52.3 0.7 38 275-312 146-184 (384)
103 PF14446 Prok-RING_1: Prokaryo 89.6 0.43 9.4E-06 35.5 3.3 43 275-321 5-50 (54)
104 KOG1609 Protein involved in mR 89.5 0.15 3.3E-06 48.3 1.1 49 275-323 78-134 (323)
105 KOG3899 Uncharacterized conser 88.7 0.23 5E-06 48.6 1.7 29 296-324 325-366 (381)
106 KOG1832 HIV-1 Vpr-binding prot 88.4 0.6 1.3E-05 51.8 4.7 24 78-105 1378-1401(1516)
107 KOG1829 Uncharacterized conser 88.4 0.16 3.5E-06 53.7 0.5 43 275-320 511-558 (580)
108 PF04931 DNA_pol_phi: DNA poly 88.1 1.3 2.8E-05 48.4 7.2 15 231-245 727-741 (784)
109 PF02891 zf-MIZ: MIZ/SP-RING z 87.7 0.15 3.2E-06 37.0 -0.3 43 276-321 3-50 (50)
110 COG5220 TFB3 Cdk activating ki 87.0 0.37 8E-06 46.1 1.9 47 275-321 10-62 (314)
111 KOG4718 Non-SMC (structural ma 86.3 0.34 7.5E-06 45.4 1.3 42 276-319 182-223 (235)
112 KOG0802 E3 ubiquitin ligase [P 85.9 0.38 8.3E-06 50.3 1.6 44 274-324 478-521 (543)
113 KOG0269 WD40 repeat-containing 82.3 1 2.2E-05 49.0 2.9 40 277-317 781-820 (839)
114 KOG1812 Predicted E3 ubiquitin 81.8 0.64 1.4E-05 46.9 1.1 46 275-320 306-353 (384)
115 KOG1815 Predicted E3 ubiquitin 81.2 0.79 1.7E-05 46.8 1.6 36 274-311 69-104 (444)
116 KOG3053 Uncharacterized conser 80.0 0.77 1.7E-05 44.3 0.9 49 274-322 19-81 (293)
117 KOG2066 Vacuolar assembly/sort 79.4 0.83 1.8E-05 49.8 1.1 47 275-322 784-834 (846)
118 PF13901 DUF4206: Domain of un 77.0 1.7 3.6E-05 40.0 2.2 41 275-320 152-197 (202)
119 KOG3005 GIY-YIG type nuclease 74.8 1.6 3.5E-05 42.2 1.5 48 275-322 182-242 (276)
120 smart00249 PHD PHD zinc finger 73.2 2.2 4.7E-05 28.4 1.5 32 277-308 1-32 (47)
121 KOG3039 Uncharacterized conser 72.1 2.2 4.7E-05 41.1 1.7 32 276-310 44-75 (303)
122 KOG3579 Predicted E3 ubiquitin 71.4 2.5 5.4E-05 41.5 1.9 38 274-312 267-306 (352)
123 KOG3113 Uncharacterized conser 71.1 6.9 0.00015 37.9 4.8 48 275-324 111-159 (293)
124 KOG2068 MOT2 transcription fac 68.7 3.9 8.4E-05 40.6 2.6 50 275-324 249-299 (327)
125 smart00132 LIM Zinc-binding do 64.5 5.5 0.00012 25.5 2.0 38 277-323 1-38 (39)
126 PF04147 Nop14: Nop14-like fam 64.1 11 0.00023 42.0 5.2 33 63-96 271-303 (840)
127 PF04216 FdhE: Protein involve 63.7 1.4 3E-05 42.5 -1.6 42 275-321 172-220 (290)
128 PF00628 PHD: PHD-finger; Int 63.4 3.3 7.1E-05 29.1 0.8 44 277-320 1-50 (51)
129 PF07975 C1_4: TFIIH C1-like d 62.7 5.1 0.00011 29.5 1.7 42 278-319 2-50 (51)
130 COG5109 Uncharacterized conser 61.0 9.8 0.00021 38.0 3.8 45 275-319 336-383 (396)
131 PF15243 ANAPC15: Anaphase-pro 58.7 37 0.00081 27.9 6.2 33 66-103 24-56 (92)
132 PF04710 Pellino: Pellino; In 58.5 3.2 7E-05 42.3 0.0 49 275-323 328-401 (416)
133 KOG0943 Predicted ubiquitin-pr 58.2 6.6 0.00014 45.4 2.3 6 84-89 1706-1711(3015)
134 KOG2113 Predicted RNA binding 57.9 8.4 0.00018 38.4 2.7 44 275-323 343-387 (394)
135 KOG0824 Predicted E3 ubiquitin 57.3 3.4 7.3E-05 40.8 -0.1 49 273-323 103-151 (324)
136 PF00412 LIM: LIM domain; Int 56.7 6.1 0.00013 28.1 1.2 38 278-324 1-38 (58)
137 PF02724 CDC45: CDC45-like pro 56.4 14 0.00031 39.6 4.4 32 56-88 83-126 (622)
138 PF04147 Nop14: Nop14-like fam 55.9 13 0.00028 41.3 4.1 10 180-189 427-436 (840)
139 PF04423 Rad50_zn_hook: Rad50 54.6 4.4 9.6E-05 29.3 0.2 10 314-323 22-31 (54)
140 PTZ00415 transmission-blocking 54.6 10 0.00023 45.2 3.1 13 100-112 147-159 (2849)
141 KOG3842 Adaptor protein Pellin 53.8 9.8 0.00021 38.0 2.4 49 275-323 341-414 (429)
142 KOG4185 Predicted E3 ubiquitin 53.0 2.5 5.3E-05 40.4 -1.8 46 276-321 208-265 (296)
143 PF06844 DUF1244: Protein of u 52.6 8.5 0.00019 29.9 1.5 11 300-310 12-22 (68)
144 PF14311 DUF4379: Domain of un 52.4 8.4 0.00018 27.9 1.4 22 296-318 34-55 (55)
145 PF04710 Pellino: Pellino; In 49.9 5.4 0.00012 40.7 0.0 44 276-322 278-338 (416)
146 KOG1245 Chromatin remodeling c 49.6 5.8 0.00013 46.4 0.2 48 275-322 1108-1159(1404)
147 KOG2807 RNA polymerase II tran 48.9 11 0.00025 37.6 2.0 43 278-320 333-375 (378)
148 PF06937 EURL: EURL protein; 48.7 15 0.00033 35.7 2.8 44 274-317 29-75 (285)
149 PF06906 DUF1272: Protein of u 48.3 32 0.0007 26.0 3.9 48 277-326 7-55 (57)
150 PF10497 zf-4CXXC_R1: Zinc-fin 47.5 24 0.00052 29.4 3.5 45 275-320 7-69 (105)
151 PF10571 UPF0547: Uncharacteri 47.4 9 0.00019 24.3 0.7 13 313-325 1-13 (26)
152 KOG4443 Putative transcription 46.4 8.9 0.00019 41.4 0.9 47 275-321 18-71 (694)
153 KOG3130 Uncharacterized conser 46.2 12 0.00026 38.5 1.7 9 100-108 267-275 (514)
154 smart00064 FYVE Protein presen 43.9 7.2 0.00016 29.0 -0.1 36 275-310 10-46 (68)
155 PLN02189 cellulose synthase 43.0 23 0.00049 40.4 3.5 49 275-323 34-87 (1040)
156 KOG3726 Uncharacterized conser 43.0 12 0.00026 40.6 1.3 42 276-320 655-697 (717)
157 PF13832 zf-HC5HC2H_2: PHD-zin 43.0 20 0.00043 29.1 2.3 32 275-308 55-88 (110)
158 PF14569 zf-UDP: Zinc-binding 42.8 28 0.00062 27.9 3.0 49 275-323 9-62 (80)
159 COG4847 Uncharacterized protei 42.5 24 0.00051 29.4 2.6 36 275-311 6-41 (103)
160 TIGR00622 ssl1 transcription f 42.3 32 0.00069 29.3 3.5 44 276-319 56-110 (112)
161 KOG2169 Zn-finger transcriptio 41.6 25 0.00054 37.9 3.4 44 275-323 306-356 (636)
162 PRK03564 formate dehydrogenase 41.3 9.9 0.00021 37.6 0.3 41 275-320 187-234 (309)
163 PF05605 zf-Di19: Drought indu 40.4 12 0.00027 26.9 0.6 38 276-323 3-42 (54)
164 cd00350 rubredoxin_like Rubred 40.2 14 0.00029 24.4 0.8 20 296-321 7-26 (33)
165 KOG3799 Rab3 effector RIM1 and 40.1 6.2 0.00013 34.9 -1.1 42 274-322 64-117 (169)
166 PLN02638 cellulose synthase A 39.3 29 0.00062 39.7 3.5 48 275-323 17-70 (1079)
167 KOG1512 PHD Zn-finger protein 38.7 14 0.0003 36.5 0.9 51 252-307 296-346 (381)
168 PF12253 CAF1A: Chromatin asse 38.1 31 0.00067 27.4 2.6 18 103-120 40-57 (77)
169 PF06750 DiS_P_DiS: Bacterial 37.9 20 0.00043 29.1 1.6 37 276-324 34-70 (92)
170 KOG1815 Predicted E3 ubiquitin 37.9 9.3 0.0002 39.1 -0.5 38 275-312 226-268 (444)
171 KOG2041 WD40 repeat protein [G 37.6 26 0.00056 38.8 2.7 45 275-323 1131-1185(1189)
172 PF13717 zinc_ribbon_4: zinc-r 37.5 15 0.00034 24.7 0.7 25 277-301 4-36 (36)
173 KOG2113 Predicted RNA binding 37.5 13 0.00027 37.2 0.4 47 274-323 135-183 (394)
174 COG5627 MMS21 DNA repair prote 37.0 17 0.00037 34.9 1.2 46 275-322 189-238 (275)
175 PF07649 C1_3: C1-like domain; 36.9 24 0.00052 22.5 1.5 29 277-305 2-30 (30)
176 TIGR01562 FdhE formate dehydro 36.9 7.2 0.00016 38.4 -1.4 41 275-320 184-232 (305)
177 PF15295 CCDC50_N: Coiled-coil 36.8 33 0.00071 30.1 2.8 18 66-83 23-40 (132)
178 KOG4364 Chromatin assembly fac 36.6 57 0.0012 35.7 5.0 22 82-103 479-502 (811)
179 KOG4218 Nuclear hormone recept 35.7 10 0.00022 38.3 -0.6 47 274-321 14-76 (475)
180 PF10235 Cript: Microtubule-as 35.1 22 0.00048 29.2 1.4 36 276-323 45-80 (90)
181 cd00065 FYVE FYVE domain; Zinc 35.0 27 0.00059 24.8 1.7 35 276-310 3-38 (57)
182 KOG1729 FYVE finger containing 34.6 7.1 0.00015 38.2 -1.8 37 276-312 215-251 (288)
183 PF01363 FYVE: FYVE zinc finge 34.5 17 0.00038 27.0 0.7 35 275-309 9-44 (69)
184 PRK04023 DNA polymerase II lar 34.5 20 0.00043 40.8 1.4 45 275-325 626-676 (1121)
185 PF02318 FYVE_2: FYVE-type zin 33.1 24 0.00052 29.6 1.4 45 275-320 54-102 (118)
186 KOG2979 Protein involved in DN 33.0 21 0.00046 34.5 1.1 43 275-319 176-220 (262)
187 PRK11827 hypothetical protein; 32.6 15 0.00033 27.9 0.1 18 306-323 2-19 (60)
188 PLN02436 cellulose synthase A 32.4 45 0.00097 38.3 3.7 49 275-323 36-89 (1094)
189 PF08914 Myb_DNA-bind_2: Rap1 32.4 10 0.00022 29.0 -0.9 20 56-79 1-20 (65)
190 PTZ00007 (NAP-L) nucleosome as 32.4 57 0.0012 32.7 4.1 24 67-90 254-277 (337)
191 COG1545 Predicted nucleic-acid 31.7 24 0.00053 30.7 1.2 21 293-321 32-52 (140)
192 KOG2038 CAATT-binding transcri 31.5 40 0.00088 37.5 3.0 15 78-92 833-847 (988)
193 PF06957 COPI_C: Coatomer (COP 30.7 29 0.00063 35.8 1.7 40 277-322 366-406 (422)
194 COG3076 Uncharacterized protei 30.7 74 0.0016 27.4 3.9 48 59-113 73-120 (135)
195 PF10146 zf-C4H2: Zinc finger- 30.4 31 0.00067 32.7 1.8 23 301-323 197-219 (230)
196 KOG0956 PHD finger protein AF1 30.4 14 0.00031 40.3 -0.5 49 275-323 117-182 (900)
197 COG3492 Uncharacterized protei 30.4 26 0.00057 29.0 1.1 12 300-311 43-54 (104)
198 PF07191 zinc-ribbons_6: zinc- 30.0 3.8 8.3E-05 32.1 -3.6 40 276-323 2-41 (70)
199 PLN02400 cellulose synthase 29.7 37 0.0008 38.9 2.5 49 275-323 36-89 (1085)
200 PF13719 zinc_ribbon_5: zinc-r 28.5 35 0.00075 23.0 1.3 25 277-301 4-36 (37)
201 PF09723 Zn-ribbon_8: Zinc rib 27.9 16 0.00034 25.3 -0.5 27 293-320 8-34 (42)
202 KOG1244 Predicted transcriptio 27.8 12 0.00027 36.6 -1.4 49 274-322 280-332 (336)
203 PF14353 CpXC: CpXC protein 27.8 47 0.001 27.8 2.2 45 276-323 2-49 (128)
204 PF13240 zinc_ribbon_2: zinc-r 27.4 8.8 0.00019 23.5 -1.6 8 313-320 14-21 (23)
205 PF13771 zf-HC5HC2H: PHD-like 27.4 37 0.00081 26.3 1.5 31 275-307 36-68 (90)
206 PF11023 DUF2614: Protein of u 27.3 51 0.0011 28.2 2.3 19 307-325 80-98 (114)
207 PLN02915 cellulose synthase A 27.0 76 0.0016 36.4 4.2 50 274-323 14-68 (1044)
208 PF14169 YdjO: Cold-inducible 26.7 29 0.00063 26.4 0.7 14 312-325 39-52 (59)
209 KOG2071 mRNA cleavage and poly 26.2 28 0.00061 37.2 0.8 35 274-308 512-556 (579)
210 KOG1356 Putative transcription 25.7 25 0.00055 39.1 0.3 48 273-321 227-280 (889)
211 COG5242 TFB4 RNA polymerase II 25.6 33 0.00072 32.9 1.1 9 100-108 74-82 (296)
212 PF03344 Daxx: Daxx Family; I 25.6 23 0.0005 38.8 0.0 15 68-82 365-379 (713)
213 KOG4430 Topoisomerase I-bindin 25.5 24 0.00052 37.5 0.1 51 275-325 260-311 (553)
214 KOG4451 Uncharacterized conser 25.4 47 0.001 31.9 2.0 24 300-323 251-274 (286)
215 smart00734 ZnF_Rad18 Rad18-lik 25.2 33 0.00071 21.6 0.7 10 314-323 3-12 (26)
216 KOG4577 Transcription factor L 25.2 20 0.00043 35.5 -0.5 41 276-325 93-133 (383)
217 PF05764 YL1: YL1 nuclear prot 24.9 63 0.0014 30.5 2.8 6 72-77 14-19 (240)
218 KOG1074 Transcriptional repres 24.5 37 0.0008 38.0 1.3 12 274-285 604-615 (958)
219 PF05285 SDA1: SDA1; InterPro 24.3 55 0.0012 32.3 2.4 11 180-190 191-201 (324)
220 COG3813 Uncharacterized protei 24.3 57 0.0012 26.0 1.9 44 278-324 8-53 (84)
221 KOG0803 Predicted E3 ubiquitin 24.0 16 0.00035 42.5 -1.6 48 276-323 1062-1115(1312)
222 PF09943 DUF2175: Uncharacteri 23.8 61 0.0013 27.2 2.2 34 276-310 3-36 (101)
223 COG2816 NPY1 NTP pyrophosphohy 23.8 20 0.00044 35.0 -0.8 31 297-327 110-144 (279)
224 smart00647 IBR In Between Ring 23.8 19 0.00042 25.8 -0.7 19 290-308 39-58 (64)
225 KOG4021 Mitochondrial ribosoma 23.6 35 0.00076 32.0 0.8 21 302-322 97-118 (239)
226 cd01407 SIR2-fam SIR2 family o 21.7 99 0.0021 28.3 3.4 33 292-324 111-145 (218)
227 PRK01343 zinc-binding protein; 21.5 47 0.001 25.1 1.0 12 312-323 9-20 (57)
228 PF07282 OrfB_Zn_ribbon: Putat 21.1 1.1E+02 0.0024 22.7 3.0 35 274-308 27-64 (69)
229 KOG1538 Uncharacterized conser 20.1 46 0.001 36.6 0.9 28 296-323 1050-1077(1081)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.3e-18 Score=163.75 Aligned_cols=78 Identities=35% Similarity=0.871 Sum_probs=69.1
Q ss_pred CCCCCCHHHHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCccccccCCC
Q 020261 248 ESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVSTSG 326 (328)
Q Consensus 248 ~s~GLS~e~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~t~~ 326 (328)
..+++.+..++++|..+|+........ ..|+|||++|..|+++++|||+|.||..||++||...+ .||+||+.+.+..
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 456889999999999999988765544 79999999999999999999999999999999998775 5999999998664
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.55 E-value=1.5e-15 Score=106.32 Aligned_cols=43 Identities=49% Similarity=1.172 Sum_probs=40.6
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCS 319 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR 319 (328)
.|+||++.|..++.++.|+|+|.||..||..||+.+++||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999999999999999999999999999999999997
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-13 Score=129.12 Aligned_cols=51 Identities=31% Similarity=0.907 Sum_probs=47.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t 324 (328)
....|+|||+.|..++++++|||+|.||..||.+|+. .+..||+||++|++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999999999999999999999999999998 77899999999986
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.36 E-value=5e-13 Score=125.24 Aligned_cols=75 Identities=27% Similarity=0.499 Sum_probs=58.4
Q ss_pred CCCCCHHHHhcCCceeccCCCC-CCCCCCcccccccccCCCCc-----eEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 249 SRGLSADTLATLPTVNYKGGTS-QNGSNDSCVICRLDYEDGET-----LTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 249 s~GLS~e~I~sLp~~~~~~~~~-~~~~~~~CaICLeef~~ge~-----v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
..+.+...+..+|.+....... .......|+||++.+..+.. .+.++|+|.||..||.+|++.+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4566889999999987554322 22346899999999765431 24456999999999999999999999999987
Q ss_pred c
Q 020261 323 S 323 (328)
Q Consensus 323 ~ 323 (328)
.
T Consensus 227 ~ 227 (238)
T PHA02929 227 I 227 (238)
T ss_pred e
Confidence 5
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=1.7e-12 Score=100.85 Aligned_cols=45 Identities=42% Similarity=0.983 Sum_probs=36.9
Q ss_pred CCcccccccccCCC----------CceEEeCCCCcccHHHHHHHHhcCCCCCCcc
Q 020261 275 NDSCVICRLDYEDG----------ETLTVLSCKHSYHSECINNWLKINKVCPVCS 319 (328)
Q Consensus 275 ~~~CaICLeef~~g----------e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR 319 (328)
...|+||++.|... -.+...+|||.||..||.+||+.+++||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999332 3456678999999999999999999999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8e-12 Score=122.49 Aligned_cols=68 Identities=32% Similarity=0.668 Sum_probs=50.7
Q ss_pred CHHHHhcCCceeccCCCCCCCCCCcccccccc-cCCC---------CceEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 253 SADTLATLPTVNYKGGTSQNGSNDSCVICRLD-YEDG---------ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 253 S~e~I~sLp~~~~~~~~~~~~~~~~CaICLee-f~~g---------e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
.+..-+.+|+.+..... .....|+||+++ |+.+ .+.++|||||+||..|++.|+.+..+||+||.+|
T Consensus 268 ~kdl~~~~~t~t~eql~---n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 268 TKDLNAMYPTATEEQLT---NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred hhHHHhhcchhhhhhhc---CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 34444455554433322 245789999999 5444 2467899999999999999999999999999995
Q ss_pred c
Q 020261 323 S 323 (328)
Q Consensus 323 ~ 323 (328)
.
T Consensus 345 i 345 (491)
T COG5243 345 I 345 (491)
T ss_pred c
Confidence 4
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.3e-11 Score=113.40 Aligned_cols=49 Identities=22% Similarity=0.656 Sum_probs=44.7
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+|||+....+ ..+||||+||+.||..|+..+..||+||..+.++
T Consensus 238 a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 457899999998877 8899999999999999999999999999998765
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.09 E-value=9.3e-11 Score=79.34 Aligned_cols=44 Identities=34% Similarity=1.019 Sum_probs=36.8
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCccccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEV 322 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV 322 (328)
.|+||+..+. ..+..++|+|.||..|+..|+.. +..||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34455669999999999999997 77899999864
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.6e-11 Score=109.03 Aligned_cols=50 Identities=40% Similarity=0.743 Sum_probs=42.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc---CCCCCCccccccCC
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI---NKVCPVCSAEVSTS 325 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~---~ksCPvCR~eV~t~ 325 (328)
+....|.|||+.-+.+ +++.|||.||+.||.+||.. ++.|||||..|...
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 4568899999998877 77779999999999999975 45799999998754
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.04 E-value=1.7e-10 Score=104.95 Aligned_cols=48 Identities=33% Similarity=0.712 Sum_probs=41.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----------------CCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI----------------NKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~----------------~ksCPvCR~eV~t 324 (328)
....|+||++.+..+ ++++|||.||+.||..|+.. ...||+||..|..
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 457899999998876 77899999999999999852 2479999999864
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.03 E-value=1.4e-10 Score=83.28 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=39.0
Q ss_pred CcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+||++.+.. ++.+||||. ||..|+..|++.++.||+||++|.
T Consensus 3 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 579999998654 588899999 999999999999999999999885
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=2.4e-10 Score=78.19 Aligned_cols=39 Identities=44% Similarity=1.001 Sum_probs=33.7
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvC 318 (328)
|+||++.+.. .++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998876 45688999999999999999999999998
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.92 E-value=1.2e-09 Score=80.69 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=41.8
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+||+..+..+ ++++|||.|+..||.+|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999999987 788999999999999999998999999998753
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.2e-10 Score=115.65 Aligned_cols=49 Identities=27% Similarity=0.866 Sum_probs=44.2
Q ss_pred CCcccccccccCCCCc--eEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGET--LTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~--v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||++.+..+.+ .++|||+|+||..|+..||++.++||+||..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 5789999999988654 689999999999999999999999999999554
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.88 E-value=1.1e-09 Score=101.63 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=38.3
Q ss_pred CCCcccccccccCCC-----CceEEe-CCCCcccHHHHHHHHhcC------CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDG-----ETLTVL-SCKHSYHSECINNWLKIN------KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~g-----e~v~~L-PCgH~FH~~CI~~WL~~~------ksCPvCR~eV~ 323 (328)
...+|+|||+..-.+ ....+| +|+|.||..||..|...+ ++||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 468999999886322 123344 699999999999999753 46999999875
No 16
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.2e-09 Score=76.46 Aligned_cols=38 Identities=34% Similarity=0.774 Sum_probs=30.6
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvC 318 (328)
|+||+..|..+ +.|+|||.|+..||..|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999998 999999999999999999754 369998
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-09 Score=97.79 Aligned_cols=51 Identities=25% Similarity=0.593 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
.....|+|||..|... ..+.+.|||+||..||+..|+....||+||+.|..
T Consensus 129 ~~~~~CPiCl~~~sek-~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEK-VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccccCCCceecchhhc-cccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3457899999998753 22446799999999999999999999999987754
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=1.9e-09 Score=86.51 Aligned_cols=49 Identities=35% Similarity=0.934 Sum_probs=39.1
Q ss_pred CCcccccccccCC--------CC--ceEEeCCCCcccHHHHHHHHhc---CCCCCCcccccc
Q 020261 275 NDSCVICRLDYED--------GE--TLTVLSCKHSYHSECINNWLKI---NKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~--------ge--~v~~LPCgH~FH~~CI~~WL~~---~ksCPvCR~eV~ 323 (328)
.+.|.||+..|.. |+ .++.-.|+|.||..||.+||.. +..||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 6789999999962 22 3444469999999999999975 468999999764
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.83 E-value=3.2e-09 Score=69.26 Aligned_cols=38 Identities=42% Similarity=1.079 Sum_probs=32.9
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~-~~ksCPvC 318 (328)
|+||+... ..++.++|+|.||..||..|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999884 3458899999999999999998 66789998
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.83 E-value=2.4e-09 Score=75.16 Aligned_cols=44 Identities=25% Similarity=0.680 Sum_probs=38.7
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
.|+||+..|......++++|||+||..||..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999955567888999999999999999866779999985
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.82 E-value=2.5e-09 Score=73.23 Aligned_cols=39 Identities=38% Similarity=1.057 Sum_probs=34.1
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHh--cCCCCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLK--INKVCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~--~~ksCPvC 318 (328)
|+||++.+..+ +++++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998766 25889999999999999998 45689998
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=4.2e-09 Score=105.32 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ ++++|+|.||..||..||.....||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 357899999999877 678999999999999999988899999998864
No 23
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.9e-09 Score=85.79 Aligned_cols=51 Identities=35% Similarity=0.757 Sum_probs=39.2
Q ss_pred CCCCCcccccccccC-------------CCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 272 NGSNDSCVICRLDYE-------------DGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 272 ~~~~~~CaICLeef~-------------~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
......|+||+..+. ..+-++.. -|+|.||..||.+||+.++.||+|.++.
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 344578999987652 22333333 4999999999999999999999998864
No 24
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.52 E-value=3e-08 Score=96.72 Aligned_cols=48 Identities=29% Similarity=0.641 Sum_probs=44.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
-..|.||.+.|..+ .++||+|.||.-||..+|..+..||.|+.++..+
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 47899999999998 8899999999999999999999999999988643
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.51 E-value=8.4e-08 Score=76.10 Aligned_cols=48 Identities=33% Similarity=0.787 Sum_probs=36.9
Q ss_pred CcccccccccC-----------CCC--ceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYE-----------DGE--TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~-----------~ge--~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+||+..|. ++. .++.=-|+|.||..||.+||..++.||+||++..
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 56777776663 222 2333349999999999999999999999999764
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3e-08 Score=78.06 Aligned_cols=50 Identities=30% Similarity=0.816 Sum_probs=37.3
Q ss_pred CCCcccccccccCCCCce---------EEe-CCCCcccHHHHHHHHhcC---CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETL---------TVL-SCKHSYHSECINNWLKIN---KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v---------~~L-PCgH~FH~~CI~~WL~~~---ksCPvCR~eV~ 323 (328)
..++|.||+..|...-.- .++ -|.|.||..||.+||... ..||+||++..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456999999999632111 122 399999999999999653 57999999764
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.2e-08 Score=92.25 Aligned_cols=49 Identities=27% Similarity=0.652 Sum_probs=41.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHH-HHhcCC-CCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINN-WLKINK-VCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~-WL~~~k-sCPvCR~eV~t~ 325 (328)
....|+||++....+ ..+||||+||..||.. |-+++. .||+||+.+...
T Consensus 214 ~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 214 ADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred cccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 357899999987766 8899999999999999 877665 599999988654
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.6e-08 Score=97.98 Aligned_cols=47 Identities=21% Similarity=0.561 Sum_probs=39.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-----CCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-----KVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~-----ksCPvCR~eV~t 324 (328)
...|||||+....+ ..+.|||+||..||.+++... ..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 57899999987665 555699999999999998654 579999998865
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.6e-08 Score=98.56 Aligned_cols=50 Identities=26% Similarity=0.823 Sum_probs=39.6
Q ss_pred CCcccccccccCCCC--------------ceEEeCCCCcccHHHHHHHHh-cCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGE--------------TLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge--------------~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t 324 (328)
...|+|||..+.... ....+||.|+||..|+.+|.. .+-.||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 367999999874211 133569999999999999998 55599999999875
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.7e-07 Score=66.27 Aligned_cols=38 Identities=32% Similarity=0.783 Sum_probs=22.7
Q ss_pred ccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcC----CCCC
Q 020261 278 CVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKIN----KVCP 316 (328)
Q Consensus 278 CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~----ksCP 316 (328)
|+||++ |...+ ..++|+|||.|+..||.+|++.+ -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 86644 45789999999999999999854 2577
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.41 E-value=1.4e-07 Score=73.06 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~t 324 (328)
...|+||..-|..+ +++||||.|.+.||..||.. ..+||+|+..+..
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46899999999998 89999999999999999998 8899999988764
No 32
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-07 Score=90.41 Aligned_cols=50 Identities=30% Similarity=0.768 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCC-------ceEEeCCCCcccHHHHHHHH--hcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGE-------TLTVLSCKHSYHSECINNWL--KINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge-------~v~~LPCgH~FH~~CI~~WL--~~~ksCPvCR~eV~ 323 (328)
++..|+||-..+.... ++.+|.|+|.||.-||+.|- .++.+||.||..|-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4578999988876554 78899999999999999996 45679999998774
No 33
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.39 E-value=2.7e-07 Score=66.76 Aligned_cols=42 Identities=31% Similarity=0.789 Sum_probs=33.2
Q ss_pred cccccccccCCCCceEEeCCC-----CcccHHHHHHHHhcC--CCCCCcc
Q 020261 277 SCVICRLDYEDGETLTVLSCK-----HSYHSECINNWLKIN--KVCPVCS 319 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCg-----H~FH~~CI~~WL~~~--ksCPvCR 319 (328)
.|.||+. +..+....++||. |.||..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3444455678985 899999999999654 5899995
No 34
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.38 E-value=8.8e-08 Score=102.81 Aligned_cols=51 Identities=24% Similarity=0.793 Sum_probs=38.2
Q ss_pred CCCCcccccccccC-CCC---ceEEeCCCCcccHHHHHHHHhc--CCCCCCcccccc
Q 020261 273 GSNDSCVICRLDYE-DGE---TLTVLSCKHSYHSECINNWLKI--NKVCPVCSAEVS 323 (328)
Q Consensus 273 ~~~~~CaICLeef~-~ge---~v~~LPCgH~FH~~CI~~WL~~--~ksCPvCR~eV~ 323 (328)
+..++|+||...+. ... .-++-.|+|.||..|+.+|++. +++||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35689999987765 221 1122339999999999999975 468999998875
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.3e-07 Score=84.66 Aligned_cols=44 Identities=25% Similarity=0.664 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
....|+||++.|..+ +++||+|.||..||..|+...-.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 457899999999988 89999999999999999885568999994
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.33 E-value=2.3e-07 Score=89.22 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|-||-..|..+ ..++|||.||.-||...|.....||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 357899999999888 78899999999999999999999999998754
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.21 E-value=5e-07 Score=90.90 Aligned_cols=47 Identities=28% Similarity=0.773 Sum_probs=39.1
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
-.+|||||+.+.... .++...|.|.||..|+.+| ...+|||||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 468999999987654 4556679999999999999 6789999998655
No 38
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=98.12 E-value=5.3e-07 Score=86.97 Aligned_cols=97 Identities=24% Similarity=0.525 Sum_probs=62.5
Q ss_pred ccccCCCCCCHHHHHHhhhhhCC---CCCCCC--HHHHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCc
Q 020261 225 WEEVDPDELSYEELLALGEVVGS---ESRGLS--ADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHS 299 (328)
Q Consensus 225 w~~ld~D~mSyEeLlaL~e~ig~---~s~GLS--~e~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~ 299 (328)
....+|..++-.++.+|...++. .+.|++ -.+|.....+. ......+..|+|||--|..++.+++++|-|+
T Consensus 64 vtl~nPRGl~d~~~~~i~~~~~~iikq~~g~pii~~lie~~~e~L----T~nn~p~gqCvICLygfa~~~~ft~T~C~Hy 139 (368)
T KOG4445|consen 64 VTLSNPRGLGDPEFREIQRQIQEIIKQNSGMPIICQLIEHCSEFL----TENNHPNGQCVICLYGFASSPAFTVTACDHY 139 (368)
T ss_pred eEecCCCCCCcHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHc----ccCCCCCCceEEEEEeecCCCceeeehhHHH
Confidence 34566777776666666554432 222322 12222211111 1112245789999999999999999999999
Q ss_pred ccHHHHHHHHhc-----------------------CCCCCCccccccCC
Q 020261 300 YHSECINNWLKI-----------------------NKVCPVCSAEVSTS 325 (328)
Q Consensus 300 FH~~CI~~WL~~-----------------------~ksCPvCR~eV~t~ 325 (328)
||..|+..+|.. .-+|||||..|.-.
T Consensus 140 ~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 140 MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 999999988721 23699999988643
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.12 E-value=4.9e-07 Score=69.90 Aligned_cols=49 Identities=33% Similarity=0.696 Sum_probs=24.0
Q ss_pred CcccccccccC-CCCc--eEEe--CCCCcccHHHHHHHHhc---C--------CCCCCccccccC
Q 020261 276 DSCVICRLDYE-DGET--LTVL--SCKHSYHSECINNWLKI---N--------KVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~-~ge~--v~~L--PCgH~FH~~CI~~WL~~---~--------ksCPvCR~eV~t 324 (328)
..|.||+..+. .+.. ++.- .|++.||..||..||.. . ..||.|+.+|..
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 57999999876 3322 2222 49999999999999953 1 249999999864
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.5e-06 Score=82.84 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...+|+|||.+.++- .+|||.|. .|..|.+..--+.+.||+||+.|.
T Consensus 289 ~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 357999999987664 89999997 799999887667889999999885
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.98 E-value=1.3e-06 Score=92.71 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=44.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||+..|..+......+|+|+||..||..|-+...+||+||.++.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 4689999999988777777789999999999999999999999999875
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.6e-06 Score=82.37 Aligned_cols=50 Identities=32% Similarity=0.782 Sum_probs=38.5
Q ss_pred CCCcccccccccCCCC----ceEEeC-CCCcccHHHHHHHH--hc-----CCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGE----TLTVLS-CKHSYHSECINNWL--KI-----NKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge----~v~~LP-CgH~FH~~CI~~WL--~~-----~ksCPvCR~eV~ 323 (328)
...+|.||++...... ...+|| |.|.||..||..|- .+ .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4689999999865432 133445 99999999999998 44 578999998653
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2.1e-06 Score=84.37 Aligned_cols=47 Identities=26% Similarity=0.574 Sum_probs=38.6
Q ss_pred CCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhc-CCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKI-NKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~-~ksCPvCR~eV~t 324 (328)
...|+|||.-++.. ++.+ |.|.||..||..-|+. ++.||.||+.+..
T Consensus 43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 57899999987654 4444 9999999999888874 6799999998754
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.73 E-value=5.3e-06 Score=63.48 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=23.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+||...++.+ +....|.|+||..||..-+. ..||+|+.+.-
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 6799999998876 33346999999999988544 45999998764
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1e-05 Score=85.85 Aligned_cols=50 Identities=22% Similarity=0.677 Sum_probs=40.7
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCCCccccccCCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVSTSG 326 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t~~ 326 (328)
....|++|-.-++.. +++.|+|.||..||.+-+. +.+.||.|.+.+...+
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 347899999766653 5566999999999999996 5679999999987654
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.6e-05 Score=77.48 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=42.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|.||+..+..+ +++||||.||..||.+-+.++..||.||..+.
T Consensus 83 sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred chhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 468899999999887 78899999999999998888899999999876
No 47
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.44 E-value=9.2e-05 Score=82.85 Aligned_cols=75 Identities=21% Similarity=0.525 Sum_probs=57.4
Q ss_pred CCCCHHHHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----------CCCCCcc
Q 020261 250 RGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----------KVCPVCS 319 (328)
Q Consensus 250 ~GLS~e~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----------ksCPvCR 319 (328)
.|--+..-..||....+...........|.||+.+--.....+.|.|+|+||..|...-|.++ -+||+|+
T Consensus 3461 CGGvkNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~ 3540 (3738)
T KOG1428|consen 3461 CGGVKNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICK 3540 (3738)
T ss_pred ccCccchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeeccccc
Confidence 344445556788777766665556678999999987777778899999999999998876543 2699999
Q ss_pred ccccC
Q 020261 320 AEVST 324 (328)
Q Consensus 320 ~eV~t 324 (328)
..|..
T Consensus 3541 n~InH 3545 (3738)
T KOG1428|consen 3541 NKINH 3545 (3738)
T ss_pred chhhh
Confidence 98753
No 48
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.42 E-value=7.5e-05 Score=74.92 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCceEE-eCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTV-LSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~-LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||+..+..+ .. +.|||.||..||..|+..+..||.|++.+...
T Consensus 20 ~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 468999999999887 33 58999999999999999999999999887543
No 49
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00012 Score=72.42 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=41.6
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
++...|+||.-.- ...+..||+|.-|+.||.+.|.+.+.|-.|++.+.+
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3567899997653 344788999999999999999999999999998863
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.37 E-value=8.1e-05 Score=55.56 Aligned_cols=41 Identities=29% Similarity=0.621 Sum_probs=28.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--CCCCCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--NKVCPV 317 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPv 317 (328)
...|||.+..|..+ ++...|+|.|-+..|.+||+. ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 57899999999866 555679999999999999944 447999
No 51
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.36 E-value=5.9e-05 Score=75.32 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=38.7
Q ss_pred CCcccccccccCC-CCceEEeCCCCcccHHHHHHHHhcC--CCCCCccc
Q 020261 275 NDSCVICRLDYED-GETLTVLSCKHSYHSECINNWLKIN--KVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~-ge~v~~LPCgH~FH~~CI~~WL~~~--ksCPvCR~ 320 (328)
...|..|-+.+-- ++.+-.|||.|+||..|+...|.++ ++||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4689999888743 4578899999999999999999765 58999994
No 52
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.34 E-value=4.8e-05 Score=74.30 Aligned_cols=49 Identities=27% Similarity=0.666 Sum_probs=40.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...+|.+|--.|.... .+.-|-|.||+.||...|..+++||+|...|..
T Consensus 14 ~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 3578999999887651 233499999999999999999999999987753
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=7.2e-05 Score=55.75 Aligned_cols=46 Identities=28% Similarity=0.651 Sum_probs=34.5
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHh-cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
..+|.||++.-... +...|||. .|..|-..-++ .+..||+||++|.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 47899998874433 45569997 67888665555 6789999999874
No 54
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.08 E-value=0.00018 Score=66.36 Aligned_cols=44 Identities=34% Similarity=0.642 Sum_probs=39.9
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
..|.||..+|..+ ++..|||.||..|...-++....|-+|.+..
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 5799999999998 7888999999999999888899999998754
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.04 E-value=0.00023 Score=71.33 Aligned_cols=46 Identities=24% Similarity=0.754 Sum_probs=37.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--CCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--NKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPvCR~eV~t 324 (328)
..|-||-+.= ..|++-||||..|..|+..|-.. ..+||.||.+|..
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 4699998653 34678899999999999999643 5799999999853
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00067 Score=65.15 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--CCCCCCcccccc
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--NKVCPVCSAEVS 323 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPvCR~eV~ 323 (328)
....+|++|-+.-..+ .+..+|+|+||..||..-+.. .-+||.|-..+.
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3457999999875554 345579999999999987653 368999998886
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00024 Score=68.72 Aligned_cols=46 Identities=26% Similarity=0.510 Sum_probs=41.5
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|-||...|..+ ++..|+|.||..|...-++....|++|.+.+..
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 4699999999998 888899999999999999999999999887643
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0009 Score=62.86 Aligned_cols=50 Identities=30% Similarity=0.672 Sum_probs=41.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--------CCCCCCccccccCCC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--------NKVCPVCSAEVSTSG 326 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--------~ksCPvCR~eV~t~~ 326 (328)
..|..|-..+..++.++ |-|-|.||.+|+..|-.. .-.||.|.++|++..
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~ 108 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI 108 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence 56999999988887664 569999999999999744 236999999998654
No 59
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.60 E-value=0.00076 Score=69.77 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=38.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-----CCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-----NKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-----~ksCPvCR~eV~t 324 (328)
....|.+|...-+.. +...|.|.||+.||..++.. +-+||+|...+..
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 346899999876554 67779999999999998843 4589999887753
No 60
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.59 E-value=0.0015 Score=64.63 Aligned_cols=64 Identities=23% Similarity=0.489 Sum_probs=45.1
Q ss_pred HHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHH--HhcCCCCCCccccc
Q 020261 256 TLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNW--LKINKVCPVCSAEV 322 (328)
Q Consensus 256 ~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~W--L~~~ksCPvCR~eV 322 (328)
.+.+-|..+-.+.......+..|.||-..+.- +.++||+|..|..|.... |-..+.||+||++.
T Consensus 42 nlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 42 NLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccCCccccccccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 33344444444444444566789999887643 478999999999997653 55688999999874
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.001 Score=65.87 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=33.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||+....+- +.+||||.-| |+.-. +...+||+||+.|.
T Consensus 305 p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 46899999998774 8899999866 66443 34456999999874
No 62
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.43 E-value=0.0015 Score=52.51 Aligned_cols=32 Identities=25% Similarity=0.696 Sum_probs=27.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHH
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECIN 306 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~ 306 (328)
....|+||-..+.. ..+.+.||||.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 35679999999876 577888999999999975
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.0037 Score=59.47 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
...|+||...+.+...+.+| ||||+|+..|+.+.+..-..||+|-.++...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 46899999999888766666 6999999999999999999999998887654
No 64
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.20 E-value=0.0028 Score=55.11 Aligned_cols=39 Identities=13% Similarity=0.432 Sum_probs=32.1
Q ss_pred CCcccccccccCCCCceEEeCCC------CcccHHHHHHHHhcCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCK------HSYHSECINNWLKINK 313 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCg------H~FH~~CI~~WL~~~k 313 (328)
..+|.||+..+.....++.++|+ |.||..|+.+|-+.++
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 46899999999886678888886 8999999999954333
No 65
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.19 E-value=0.0033 Score=45.04 Aligned_cols=40 Identities=30% Similarity=0.850 Sum_probs=27.1
Q ss_pred ccccccccCCCCceEEeCCC--C---cccHHHHHHHHh--cCCCCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCK--H---SYHSECINNWLK--INKVCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCg--H---~FH~~CI~~WL~--~~ksCPvC 318 (328)
|-||+..-.... ..+.||+ = ..|..|+.+|+. .+.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998866554 4567764 3 679999999997 45689998
No 66
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.00028 Score=70.44 Aligned_cols=51 Identities=24% Similarity=0.587 Sum_probs=44.8
Q ss_pred CCcccccccccCCC-CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
...|+||...++.. +++..+-|||.+|..||.+||..+..||.|+++++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 46799999998766 6777788999999999999999999999999998754
No 67
>PHA03096 p28-like protein; Provisional
Probab=96.19 E-value=0.0022 Score=62.12 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=31.7
Q ss_pred CcccccccccCCC----CceEEeC-CCCcccHHHHHHHHhcC---CCCCCcc
Q 020261 276 DSCVICRLDYEDG----ETLTVLS-CKHSYHSECINNWLKIN---KVCPVCS 319 (328)
Q Consensus 276 ~~CaICLeef~~g----e~v~~LP-CgH~FH~~CI~~WL~~~---ksCPvCR 319 (328)
..|.||++..... ....+|+ |.|.||..||..|-..+ .+||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 5799999987543 2345676 99999999999998543 3444444
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.0028 Score=63.82 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=38.0
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--------CCCCCccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--------KVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~--------ksCPvCR~ 320 (328)
...|.||++.......++.|||+|+||..|+..++... -.||-|+-
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 46799999998777889999999999999999998531 26876653
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.10 E-value=0.0028 Score=47.20 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=35.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 326 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~~ 326 (328)
...|..|...-..+ +++||+|..+..|..- .+-+-||+|.+++....
T Consensus 7 ~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 34677776554444 8899999999999655 36788999999987654
No 70
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0021 Score=57.70 Aligned_cols=28 Identities=43% Similarity=0.860 Sum_probs=26.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccH
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHS 302 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~ 302 (328)
..+|+|||+++..++++.+|||-.+||+
T Consensus 177 kGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 177 KGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred CCcEEEEhhhccCCCceeccceEEEeec
Confidence 4689999999999999999999999996
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0023 Score=62.07 Aligned_cols=42 Identities=26% Similarity=0.598 Sum_probs=31.7
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||+...... +.|+|||. -|..|-.. -+.||+||+.|.
T Consensus 300 ~~LC~ICmDaP~DC---vfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC---VFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcce---EEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 46799998875544 89999996 46777543 348999999764
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.87 E-value=0.008 Score=57.09 Aligned_cols=50 Identities=16% Similarity=0.460 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|||+...|..... +.+.||||+|...||..- .....||+|-.++..
T Consensus 112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 45789999999965544 445589999999999986 335689999988764
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.77 E-value=0.0065 Score=44.12 Aligned_cols=45 Identities=18% Similarity=0.506 Sum_probs=22.1
Q ss_pred ccccccccCCC-CceEEeCCCCcccHHHHHHHHh-cCCCCCCccccc
Q 020261 278 CVICRLDYEDG-ETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEV 322 (328)
Q Consensus 278 CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV 322 (328)
|++|.+.+... ..+.--+|++..|..|...-+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999998332 2333345899999999887775 467999999863
No 74
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.70 E-value=0.0086 Score=58.48 Aligned_cols=42 Identities=29% Similarity=0.611 Sum_probs=34.6
Q ss_pred CcccccccccCCCCceEEeC-CCCcccHHHHHHHHhc-CCCCCCccc
Q 020261 276 DSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKI-NKVCPVCSA 320 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~-~ksCPvCR~ 320 (328)
+.|+.|..-+..+ ..+| |+|.||..||..-|.. -..||.|.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899998877766 4445 9999999999988865 468999976
No 75
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0088 Score=54.60 Aligned_cols=50 Identities=30% Similarity=0.727 Sum_probs=34.9
Q ss_pred CcccccccccCCCC----ceEEeCCCCcccHHHHHHHHhcC-----------CCCCCccccccCC
Q 020261 276 DSCVICRLDYEDGE----TLTVLSCKHSYHSECINNWLKIN-----------KVCPVCSAEVSTS 325 (328)
Q Consensus 276 ~~CaICLeef~~ge----~v~~LPCgH~FH~~CI~~WL~~~-----------ksCPvCR~eV~t~ 325 (328)
..|.||...--.|. ..-...||..||.-|+..||+.- ..||.|..+|...
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 45777765543332 22334599999999999999541 3599999988643
No 76
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.0068 Score=65.70 Aligned_cols=43 Identities=28% Similarity=0.724 Sum_probs=34.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|.+|--.+..| .+..-|||.||..|+. .....||.|+.+..
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 4799998887665 4566799999999998 45678999998553
No 77
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.0089 Score=65.08 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=29.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHH
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL 309 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL 309 (328)
..+.|.||...+-.. ...+.||||.||+.||.+-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 457899999887653 67788999999999998865
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.30 E-value=0.018 Score=51.56 Aligned_cols=46 Identities=26% Similarity=0.817 Sum_probs=34.0
Q ss_pred CCCcccccccccCCCCceEEeCCC--C---cccHHHHHHHHhcC--CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCK--H---SYHSECINNWLKIN--KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCg--H---~FH~~CI~~WL~~~--ksCPvCR~eV~ 323 (328)
....|-||+..... ..-||. . .-|..|+..|+..+ .+||+|+++..
T Consensus 7 ~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 35789999988432 235754 4 45999999999754 58999998764
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.015 Score=57.22 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
....|+||+....++ .+|. -|-+||..||..++...+.|||=..++
T Consensus 299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 346899999998777 3333 599999999999999999999865544
No 80
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.23 E-value=0.011 Score=57.69 Aligned_cols=43 Identities=23% Similarity=0.589 Sum_probs=35.7
Q ss_pred CCcccccccccCCCCceEEeCC--CCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSC--KHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPC--gH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
-..||||...+..+ +..| ||.-|..|-. +..+.||.||.++..
T Consensus 48 lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 47899999999886 6677 7988888865 468899999999873
No 81
>PHA02862 5L protein; Provisional
Probab=95.06 E-value=0.017 Score=51.07 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=32.4
Q ss_pred CcccccccccCCCCceEEeCC---CCcccHHHHHHHHhc--CCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSC---KHSYHSECINNWLKI--NKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPC---gH~FH~~CI~~WL~~--~ksCPvCR~eV~ 323 (328)
..|-||+..-... +.--.| ...-|..|+.+|++. +..||+||.+..
T Consensus 3 diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 5799999885332 210112 246899999999974 458999998864
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.97 E-value=0.0098 Score=41.93 Aligned_cols=41 Identities=22% Similarity=0.711 Sum_probs=23.7
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC--CCCCc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK--VCPVC 318 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k--sCPvC 318 (328)
|.+|.+....|..-....|+=.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877773222234999999999999998765 79998
No 83
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=94.82 E-value=0.037 Score=53.19 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=2.9
Q ss_pred CCCCccC
Q 020261 101 AGSYLHD 107 (328)
Q Consensus 101 ~~~y~~~ 107 (328)
.|.|.+.
T Consensus 266 ~~~~~~~ 272 (314)
T PF06524_consen 266 GGNYGYE 272 (314)
T ss_pred CCCCccc
Confidence 3444443
No 84
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.81 E-value=0.011 Score=63.36 Aligned_cols=44 Identities=23% Similarity=0.652 Sum_probs=36.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--CCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~--ksCPvCR~eV~ 323 (328)
..|.||++ .+..++.+|+|.||..|+..-+... ..||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999998 4556888999999999999987643 36999997653
No 85
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.80 E-value=0.017 Score=62.65 Aligned_cols=47 Identities=28% Similarity=0.728 Sum_probs=35.3
Q ss_pred CCCcccccccccCCCCceEE-eCCCCcccHHHHHHHHhcC-------CCCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTV-LSCKHSYHSECINNWLKIN-------KVCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~-LPCgH~FH~~CI~~WL~~~-------ksCPvCR~ 320 (328)
...+|.||.+.+.....+-. ..|-|+||..||..|-+.. -.||.|+.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34789999999876543322 2388999999999998642 15999984
No 86
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.68 E-value=0.016 Score=55.98 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=37.9
Q ss_pred CcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 276 DSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 276 ~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
..||||.+.+.... .+..++|||.-|..|.......+=+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 44999998865544 5678899999999999998877789999988
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.43 E-value=0.054 Score=54.17 Aligned_cols=29 Identities=28% Similarity=0.862 Sum_probs=22.8
Q ss_pred CCCcccHHHHHHHHhc-------------CCCCCCccccccC
Q 020261 296 CKHSYHSECINNWLKI-------------NKVCPVCSAEVST 324 (328)
Q Consensus 296 CgH~FH~~CI~~WL~~-------------~ksCPvCR~eV~t 324 (328)
|...+|..|+.+|+-. +-.||.||+.+..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 5677899999999832 3479999998753
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.98 E-value=0.016 Score=65.37 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=38.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
...|.||+..+.... .+..|||.||..|+..|+..+..||+|+...
T Consensus 1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 458999999987321 4556999999999999999999999998543
No 89
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.032 Score=54.79 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=30.2
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
.|.-|--.+ ...-+.+||+|+||.+|... ..-|.||.|--.|.
T Consensus 92 fCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 576675333 23346789999999999754 34679999976653
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.83 E-value=0.038 Score=40.18 Aligned_cols=44 Identities=23% Similarity=0.672 Sum_probs=25.6
Q ss_pred cccccccccCCCCceEEeCC-CCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 277 SCVICRLDYEDGETLTVLSC-KHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPC-gH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
.|--|.-. .. ..+.| .|+.|..|+...|.++..||+|..++++.
T Consensus 4 nCKsCWf~--~k---~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFA--NK---GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S----S---SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhc--CC---CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 45566633 22 23446 69999999999999999999999999875
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.67 E-value=0.076 Score=52.85 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=35.9
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh-cCCCCCCccccc
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK-INKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV 322 (328)
....|+.|++.+...++ ..-.|||-..|.-|....-. .+..||-||+..
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 45679999999987764 44567998888888554332 357899999864
No 92
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=0.1 Score=52.61 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=38.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC---CCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK---VCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k---sCPvCR~eV 322 (328)
.-..|||=.+.-........|.|||+..+.-|.+..+... .||.|=.+.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 3468999888776666678999999999999999776544 699996544
No 93
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.04 E-value=0.12 Score=45.23 Aligned_cols=50 Identities=28% Similarity=0.575 Sum_probs=36.8
Q ss_pred CCcccccccccCCCCceEEeC---CCCcccHHHHHHHHh---cCCCCCCccccccCCC
Q 020261 275 NDSCVICRLDYEDGETLTVLS---CKHSYHSECINNWLK---INKVCPVCSAEVSTSG 326 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP---CgH~FH~~CI~~WL~---~~ksCPvCR~eV~t~~ 326 (328)
-.+|.||.+...... ..-| ||-..|..|-...++ ...+||+|++++.++.
T Consensus 80 lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 478999999866542 2223 899999998766544 3568999999987654
No 94
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.051 Score=57.76 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=31.8
Q ss_pred CcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 276 DSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
..|.||+..|-... ..+.|.|||..|..|+..- -+.+|| |++.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 57999988886553 2345569999999999764 566788 6654
No 95
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.51 E-value=0.1 Score=56.48 Aligned_cols=41 Identities=32% Similarity=0.805 Sum_probs=31.5
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPV 317 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPv 317 (328)
..|+||.-.+. |-..+...|+|..|..|...|+....+||.
T Consensus 1029 ~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 35777665542 334556779999999999999999999984
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.44 E-value=0.043 Score=58.72 Aligned_cols=47 Identities=23% Similarity=0.658 Sum_probs=38.9
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC---CCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN---KVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~---ksCPvCR~eV~t 324 (328)
..+|+||+..+..+ ..+.|-|.|+..|+..-|... +.||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 47899999999887 778899999999998876544 479999976653
No 97
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.36 E-value=0.083 Score=57.33 Aligned_cols=51 Identities=10% Similarity=0.220 Sum_probs=37.4
Q ss_pred CCcccccccccCCCC-ceEEeC---CCCcccHHHHHHHHhc------CCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGE-TLTVLS---CKHSYHSECINNWLKI------NKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LP---CgH~FH~~CI~~WL~~------~ksCPvCR~eV~t~ 325 (328)
..+|.||...+..+. ...++| |+|.||..||..|+.+ +-.||+|..-|.++
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 357888887776632 345566 9999999999999843 23689998776544
No 98
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.61 E-value=0.3 Score=43.79 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCcccccccccCCCCceEE---------eCCC-CcccHHHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLTV---------LSCK-HSYHSECINNWL 309 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~---------LPCg-H~FH~~CI~~WL 309 (328)
...|+|||+.-.+.--+.. .-|+ -.-|..|+.++-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfk 46 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFK 46 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHH
Confidence 3579999998766511100 0022 224788999986
No 99
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=90.57 E-value=0.3 Score=53.22 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=8.0
Q ss_pred ccccchHHHHHHHHHH
Q 020261 176 DVFSSDEAYARALQDA 191 (328)
Q Consensus 176 a~~~sdE~~AR~LQ~~ 191 (328)
+.|.=|+.+|...+..
T Consensus 733 ~m~~lD~~La~~Fk~r 748 (784)
T PF04931_consen 733 QMMALDEQLAAIFKER 748 (784)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.14 Score=47.62 Aligned_cols=41 Identities=27% Similarity=0.712 Sum_probs=29.1
Q ss_pred ccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccCC
Q 020261 278 CVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
|-+|.+ .+-.|..|||.|. +|..|=.. .+.||+|+..+...
T Consensus 161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~ 202 (207)
T KOG1100|consen 161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKTSS 202 (207)
T ss_pred ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhhce
Confidence 777754 4456889999775 77778543 55699999876543
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.23 E-value=0.24 Score=54.07 Aligned_cols=49 Identities=33% Similarity=0.746 Sum_probs=36.6
Q ss_pred CCCcccccccccCCCCceEEeCCCC-----cccHHHHHHHHhc--CCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKH-----SYHSECINNWLKI--NKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH-----~FH~~CI~~WL~~--~ksCPvCR~eV~ 323 (328)
....|-||+.+=..+..+. -||+. ..|..|+..|+.- .+.|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4578999998865554443 36764 4899999999974 458999998864
No 102
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.11 Score=52.25 Aligned_cols=38 Identities=21% Similarity=0.769 Sum_probs=29.3
Q ss_pred CCcccccccccCCC-CceEEeCCCCcccHHHHHHHHhcC
Q 020261 275 NDSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLKIN 312 (328)
Q Consensus 275 ~~~CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~~~ 312 (328)
..+|.||+..+... ....++.|+|.||..|+.+.+..+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 57899999554444 455567799999999999998643
No 103
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.63 E-value=0.43 Score=35.55 Aligned_cols=43 Identities=26% Similarity=0.743 Sum_probs=32.5
Q ss_pred CCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCC--cccc
Q 020261 275 NDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPV--CSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPv--CR~e 321 (328)
...|++|-..|+.++.+++-| |+-.||+.|... ...|-+ |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 467999999999888777777 999999999432 445644 5443
No 104
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.53 E-value=0.15 Score=48.29 Aligned_cols=49 Identities=24% Similarity=0.651 Sum_probs=36.3
Q ss_pred CCcccccccccCCCCc-eEEeCCC-----CcccHHHHHHHHh--cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCK-----HSYHSECINNWLK--INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCg-----H~FH~~CI~~WL~--~~ksCPvCR~eV~ 323 (328)
...|-||......... ....||. +..|..|+..|+. .+..|.+|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3679999987654321 4566764 5689999999998 5568999988654
No 105
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=0.23 Score=48.63 Aligned_cols=29 Identities=17% Similarity=0.594 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHh-------------cCCCCCCccccccC
Q 020261 296 CKHSYHSECINNWLK-------------INKVCPVCSAEVST 324 (328)
Q Consensus 296 CgH~FH~~CI~~WL~-------------~~ksCPvCR~eV~t 324 (328)
|...+|..|+.+|+. .+-+||.||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 678899999999983 34579999998753
No 106
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.45 E-value=0.6 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 020261 78 EQERAYMMLRMNNNEGSDYGSWEAGSYL 105 (328)
Q Consensus 78 ~qe~~~~~~~~~~~~~~~~~~~~~~~y~ 105 (328)
|-++.-||++|.. .-.--++|+--
T Consensus 1378 e~~~~~d~dq~sT----~~r~yEIGR~r 1401 (1516)
T KOG1832|consen 1378 EMEDQEDMDQFST----SARMYEIGRRR 1401 (1516)
T ss_pred eccChhhhhhhhh----hhhhhhhcccC
Confidence 3456667777632 11233566643
No 107
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=88.40 E-value=0.16 Score=53.71 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=27.1
Q ss_pred CCcccccccc-----cCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 275 NDSCVICRLD-----YEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLee-----f~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
...|.||-.. |......+...|+++||..|... .+..||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 3567888321 22222344456999999999543 5556999954
No 108
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=88.14 E-value=1.3 Score=48.38 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=9.5
Q ss_pred CCCCHHHHHHhhhhh
Q 020261 231 DELSYEELLALGEVV 245 (328)
Q Consensus 231 D~mSyEeLlaL~e~i 245 (328)
+.|+-+++.+|-..+
T Consensus 727 ~~mdDe~m~~lD~~L 741 (784)
T PF04931_consen 727 EDMDDEQMMALDEQL 741 (784)
T ss_pred cccCHHHHHHHHHHH
Confidence 456667777765554
No 109
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=87.66 E-value=0.15 Score=37.01 Aligned_cols=43 Identities=21% Similarity=0.443 Sum_probs=21.6
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC---C--CCCCcccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN---K--VCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~---k--sCPvCR~e 321 (328)
..|+|....+..+ ++...|.|.-|.+ +..||... + .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 5799988887764 5566799986654 44566432 2 69999863
No 110
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.01 E-value=0.37 Score=46.11 Aligned_cols=47 Identities=19% Similarity=0.597 Sum_probs=35.5
Q ss_pred CCccccccccc-CCCC-ceEEeC-CCCcccHHHHHHHHhcCC-CCC--Ccccc
Q 020261 275 NDSCVICRLDY-EDGE-TLTVLS-CKHSYHSECINNWLKINK-VCP--VCSAE 321 (328)
Q Consensus 275 ~~~CaICLeef-~~ge-~v~~LP-CgH~FH~~CI~~WL~~~k-sCP--vCR~e 321 (328)
...||||..+. -+++ ++.+-| |-|..|-.|+...+.... .|| -|-+-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 46899998874 4444 444446 999999999999998765 799 77543
No 111
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=86.28 E-value=0.34 Score=45.38 Aligned_cols=42 Identities=31% Similarity=0.826 Sum_probs=34.6
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCS 319 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR 319 (328)
..|.+|..-.--+ ++.=.|+-.||..||..++.....||.|.
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 5799998775543 34446999999999999999999999993
No 112
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.38 Score=50.31 Aligned_cols=44 Identities=32% Similarity=0.938 Sum_probs=37.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|.||+..+ ..++.+|. |..|+..|+..+.+||+|+..+..
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKE 521 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhc
Confidence 356899999998 44777888 899999999999999999887653
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.35 E-value=1 Score=49.00 Aligned_cols=40 Identities=23% Similarity=0.573 Sum_probs=28.7
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCC
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPV 317 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPv 317 (328)
.|++|.-.+. |..+-.--|+|.-|..|+.+|+...+-||.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 6778865542 211222239999999999999999888876
No 114
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=0.64 Score=46.93 Aligned_cols=46 Identities=24% Similarity=0.513 Sum_probs=32.3
Q ss_pred CCcccccccccCCCC--ceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 275 NDSCVICRLDYEDGE--TLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge--~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
...|++|.-.+.-.. .-.+-.|||.||..|...|...+..|..|-+
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r 353 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCR 353 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccc
Confidence 356888876654433 2222239999999999999988888755533
No 115
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=0.79 Score=46.80 Aligned_cols=36 Identities=25% Similarity=0.654 Sum_probs=30.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI 311 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~ 311 (328)
....|.||...+.. .+..+.|+|.||..|+...|..
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999998865 5677889999999999998854
No 116
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.97 E-value=0.77 Score=44.27 Aligned_cols=49 Identities=29% Similarity=0.652 Sum_probs=34.3
Q ss_pred CCCcccccccccCCCCce-EEeCC-----CCcccHHHHHHHHhcC--------CCCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETL-TVLSC-----KHSYHSECINNWLKIN--------KVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v-~~LPC-----gH~FH~~CI~~WL~~~--------ksCPvCR~eV 322 (328)
.+..|=||+..=+..... -+-|| .|-.|..||..|+..+ -+||-|+++.
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 346799998875544322 34466 4778999999999432 2699999875
No 117
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.43 E-value=0.83 Score=49.81 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=34.5
Q ss_pred CCcccccccccCC-C---CceEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 275 NDSCVICRLDYED-G---ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~-g---e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
...|.-|+...-. + ..++++.|+|.||..|+.--..+++ |-.|....
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~~~ 834 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESGKN 834 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhcee
Confidence 3578899887542 2 4678899999999999988776665 76665433
No 118
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.01 E-value=1.7 Score=40.04 Aligned_cols=41 Identities=32% Similarity=0.789 Sum_probs=28.1
Q ss_pred CCcccccccc-----cCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 275 NDSCVICRLD-----YEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLee-----f~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
+..|-||-.. |.....++.-.|+-.||..|.. ++.||.|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4678899752 3332233344599999999965 377999965
No 119
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=74.83 E-value=1.6 Score=42.23 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=34.4
Q ss_pred CCcccccccccCCCC-ceEEeC---CCCcccHHHHHHHHhc---------CCCCCCccccc
Q 020261 275 NDSCVICRLDYEDGE-TLTVLS---CKHSYHSECINNWLKI---------NKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LP---CgH~FH~~CI~~WL~~---------~ksCPvCR~eV 322 (328)
...|-||...+...+ .+..-| |.-.+|..|+..-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 468999999994333 333333 8999999999995532 35799999854
No 120
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.08 E-value=2.2 Score=41.10 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=29.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHh
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~ 310 (328)
..|..||..+..+ ++.|=||+|++.||.+++.
T Consensus 44 dcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 5799999999988 8889999999999999874
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=2.5 Score=41.48 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=28.3
Q ss_pred CCCcccccccccCCCCceEEeC--CCCcccHHHHHHHHhcC
Q 020261 274 SNDSCVICRLDYEDGETLTVLS--CKHSYHSECINNWLKIN 312 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP--CgH~FH~~CI~~WL~~~ 312 (328)
..+.|.+|.+.++... .+..| =.|+||..|-..-++..
T Consensus 267 apLcCTLC~ERLEDTH-FVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH-FVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCc-eeecCCCcccceecccCHHHHHhh
Confidence 3478999999987752 22222 38999999999988764
No 123
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.11 E-value=6.9 Score=37.86 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=35.8
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+|---+|...- .+...+|||+|-..-+.+. ...+|++|.+.+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 357999887776544 3455689999999887764 47799999987654
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.74 E-value=3.9 Score=40.65 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=36.6
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||-+.....+ ...-.||+|..|..|+..-......||.||+....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 378999998763332 22233588888888888877888899999977653
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=64.54 E-value=5.5 Score=25.54 Aligned_cols=38 Identities=24% Similarity=0.627 Sum_probs=25.3
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
.|+.|...+...... +..=+..||..|. .|..|+..+.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 378888877665222 2234788998875 5888877663
No 126
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=64.10 E-value=11 Score=41.97 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=15.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 020261 63 LSQVDADLALARTLQEQERAYMMLRMNNNEGSDY 96 (328)
Q Consensus 63 ~~~~~~~~~~~~~lq~qe~~~~~~~~~~~~~~~~ 96 (328)
.+.++.--.-+.-|+..|+. -+-||.+...++-
T Consensus 271 KT~EE~a~ee~erLeklE~~-Rl~RM~g~~~~~~ 303 (840)
T PF04147_consen 271 KTEEEIAKEEKERLEKLEEE-RLKRMRGEEESDD 303 (840)
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHhhhcccccccc
Confidence 34444433344455544433 3556765433333
No 127
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=63.68 E-value=1.4 Score=42.45 Aligned_cols=42 Identities=24% Similarity=0.490 Sum_probs=18.0
Q ss_pred CCcccccccccC-----CCC--ceEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 275 NDSCVICRLDYE-----DGE--TLTVLSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~-----~ge--~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
...||||-..-. .+. .. .|.+|.-|-..|--.+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~-----R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGK-----RYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------E-----EEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCcc-----EEEEcCCCCCeeeecCCCCcCCCCC
Confidence 468999965532 211 12 3446677777887778899999643
No 128
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=63.41 E-value=3.3 Score=29.07 Aligned_cols=44 Identities=32% Similarity=0.732 Sum_probs=31.5
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhc------CCCCCCccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI------NKVCPVCSA 320 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~------~ksCPvCR~ 320 (328)
.|.||......+..|.--.|+..||..|+..-... .=.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899985555555655679999999999775431 236888864
No 129
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=62.72 E-value=5.1 Score=29.49 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=20.4
Q ss_pred ccccccccCCCC------ceEEeC-CCCcccHHHHHHHHhcCCCCCCcc
Q 020261 278 CVICRLDYEDGE------TLTVLS-CKHSYHSECINNWLKINKVCPVCS 319 (328)
Q Consensus 278 CaICLeef~~ge------~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR 319 (328)
|--|+..|..+. ....-| |++.||..|=.---..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555676766542 223334 999999999432223345799884
No 130
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.03 E-value=9.8 Score=37.95 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=32.4
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC---CCCCCcc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN---KVCPVCS 319 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~---ksCPvCR 319 (328)
-..||+-.+.-......+.|.|||+.-..-+...-+.. -.||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 35788866655544456888999999999888765433 3699994
No 131
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=58.71 E-value=37 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=19.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 020261 66 VDADLALARTLQEQERAYMMLRMNNNEGSDYGSWEAGS 103 (328)
Q Consensus 66 ~~~~~~~~~~lq~qe~~~~~~~~~~~~~~~~~~~~~~~ 103 (328)
.+.+.-|++ |||++.=.|..+-. -+++.- |+|.
T Consensus 24 c~dE~EL~~--~Eq~~q~Wl~sI~e-kd~nlv--PIGK 56 (92)
T PF15243_consen 24 CVDETELQQ--QEQQHQAWLQSIAE-KDNNLV--PIGK 56 (92)
T ss_pred cchHHHHHH--HHHHHHHHHHHHHH-hccCcC--ccCC
Confidence 455666764 67777777666643 344443 5555
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=58.52 E-value=3.2 Score=42.25 Aligned_cols=49 Identities=22% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCcccccccccCC----------------CCceEEeCCCCcccHHHHHHHHhc---------CCCCCCcccccc
Q 020261 275 NDSCVICRLDYED----------------GETLTVLSCKHSYHSECINNWLKI---------NKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~----------------ge~v~~LPCgH~FH~~CI~~WL~~---------~ksCPvCR~eV~ 323 (328)
.-+|+||+..-.- ......-||||+--.+...-|-+. +..||.|-..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 4689999865210 012234589999888899999754 247999988775
No 133
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=58.20 E-value=6.6 Score=45.43 Aligned_cols=6 Identities=33% Similarity=0.290 Sum_probs=2.9
Q ss_pred HHHHhc
Q 020261 84 MMLRMN 89 (328)
Q Consensus 84 ~~~~~~ 89 (328)
.||.+|
T Consensus 1706 rllsgn 1711 (3015)
T KOG0943|consen 1706 RLLSGN 1711 (3015)
T ss_pred hhccCC
Confidence 345554
No 134
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=57.92 E-value=8.4 Score=38.42 Aligned_cols=44 Identities=2% Similarity=-0.080 Sum_probs=32.2
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|..|-...-.. +..+|+|. ||..|.. +....+||+|..-+.
T Consensus 343 ~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccce
Confidence 46788886554332 56689985 7888877 677889999987553
No 135
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.25 E-value=3.4 Score=40.77 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
.....|-||.-.+..+. +.-.|.|.|+..|...|....+.||.||..+.
T Consensus 103 ~~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 34578999988776552 11239999999999999999999999987654
No 136
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=56.72 E-value=6.1 Score=28.05 Aligned_cols=38 Identities=21% Similarity=0.562 Sum_probs=20.2
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
|+.|...+.....+ +..-+..||..|+ +|-.|++.|..
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPECF--------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTTS--------BETTTTCBTTT
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEcccc--------ccCCCCCccCC
Confidence 55566665543322 1235666776664 46666666543
No 137
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=56.37 E-value=14 Score=39.63 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=16.5
Q ss_pred CCCCCccccccch---------hHHHHHHHHHH---HHHHHHHHh
Q 020261 56 TRTPFTNLSQVDA---------DLALARTLQEQ---ERAYMMLRM 88 (328)
Q Consensus 56 ~~~~~~~~~~~~~---------~~~~~~~lq~q---e~~~~~~~~ 88 (328)
++||| +|.-+-+ |=....-|+.+ ..||..|.-
T Consensus 83 shRP~-~L~Nv~~~~~~v~v~ddg~~~~~l~~~~~~~~a~~~l~~ 126 (622)
T PF02724_consen 83 SHRPW-NLDNVFSDNDQVIVFDDGDIEEELQEEPEYRDAYEALEE 126 (622)
T ss_pred CCCCc-cHhhccCCCCcEEEEECCChhhhcchhhhhHHHHHHhhh
Confidence 47787 4433333 23334445555 566766653
No 138
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=55.89 E-value=13 Score=41.32 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=5.5
Q ss_pred chHHHHHHHH
Q 020261 180 SDEAYARALQ 189 (328)
Q Consensus 180 sdE~~AR~LQ 189 (328)
+-+.|..+|.
T Consensus 427 s~eel~~lL~ 436 (840)
T PF04147_consen 427 SHEELLELLD 436 (840)
T ss_pred CHHHHHHHHh
Confidence 3455666665
No 139
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=54.63 E-value=4.4 Score=29.34 Aligned_cols=10 Identities=30% Similarity=1.132 Sum_probs=5.4
Q ss_pred CCCCcccccc
Q 020261 314 VCPVCSAEVS 323 (328)
Q Consensus 314 sCPvCR~eV~ 323 (328)
.||||.+++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999999875
No 140
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=54.57 E-value=10 Score=45.18 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=5.9
Q ss_pred CCCCCccCCCCCC
Q 020261 100 EAGSYLHDEDDDF 112 (328)
Q Consensus 100 ~~~~y~~~~~d~~ 112 (328)
|..+|.-|++|++
T Consensus 147 ~~~~~~~d~~~~~ 159 (2849)
T PTZ00415 147 PRDNFVIDDDDED 159 (2849)
T ss_pred cccccccCCcccc
Confidence 4445554543333
No 141
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.83 E-value=9.8 Score=38.02 Aligned_cols=49 Identities=24% Similarity=0.692 Sum_probs=33.1
Q ss_pred CCcccccccccC---------------CCC-ceEEeCCCCcccHHHHHHHHhc---------CCCCCCcccccc
Q 020261 275 NDSCVICRLDYE---------------DGE-TLTVLSCKHSYHSECINNWLKI---------NKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~---------------~ge-~v~~LPCgH~FH~~CI~~WL~~---------~ksCPvCR~eV~ 323 (328)
...|+||+..=. .|. .-..-||||+--.+-+.-|-++ ...||.|-+.+.
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 468999986521 011 1223579998888888888765 347999987664
No 142
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.96 E-value=2.5 Score=40.36 Aligned_cols=46 Identities=35% Similarity=0.624 Sum_probs=36.2
Q ss_pred CcccccccccCCC-C--ceEEeC--------CCCcccHHHHHHHHhcC-CCCCCcccc
Q 020261 276 DSCVICRLDYEDG-E--TLTVLS--------CKHSYHSECINNWLKIN-KVCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~g-e--~v~~LP--------CgH~FH~~CI~~WL~~~-ksCPvCR~e 321 (328)
..|.||...|... . ..+++. |+|..|..|+..-+... ..||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 6799999998732 2 334556 99999999999998655 589999864
No 143
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=52.62 E-value=8.5 Score=29.92 Aligned_cols=11 Identities=18% Similarity=1.132 Sum_probs=8.4
Q ss_pred ccHHHHHHHHh
Q 020261 300 YHSECINNWLK 310 (328)
Q Consensus 300 FH~~CI~~WL~ 310 (328)
||+.|+.+|+.
T Consensus 12 FCRNCLskWy~ 22 (68)
T PF06844_consen 12 FCRNCLSKWYR 22 (68)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 144
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=52.44 E-value=8.4 Score=27.92 Aligned_cols=22 Identities=32% Similarity=0.892 Sum_probs=14.4
Q ss_pred CCCcccHHHHHHHHhcCCCCCCc
Q 020261 296 CKHSYHSECINNWLKINKVCPVC 318 (328)
Q Consensus 296 CgH~FH~~CI~~WL~~~ksCPvC 318 (328)
|||.|-.. |..-+.....||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 67766654 33444567789998
No 145
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.91 E-value=5.4 Score=40.69 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=0.0
Q ss_pred CcccccccccCCC-----------CceEEeCCCCcccHHHHHHHHh------cCCCCCCccccc
Q 020261 276 DSCVICRLDYEDG-----------ETLTVLSCKHSYHSECINNWLK------INKVCPVCSAEV 322 (328)
Q Consensus 276 ~~CaICLeef~~g-----------e~v~~LPCgH~FH~~CI~~WL~------~~ksCPvCR~eV 322 (328)
..|++=|..+..+ ..-+-|.|||++-.. .|-. ..+.||+||+.-
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 4677766555332 123456799986543 5753 246899999753
No 146
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=49.63 E-value=5.8 Score=46.43 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=38.9
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC----CCCCccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK----VCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k----sCPvCR~eV 322 (328)
...|.||+........+...-|.-.||..|+.+-+.... .||-||..-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 468999999887766666667999999999999886543 799998754
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=48.90 E-value=11 Score=37.62 Aligned_cols=43 Identities=21% Similarity=0.450 Sum_probs=27.5
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
|-.|..........+.-.|+|.||..|=.---..-..||-|-.
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 5555444444444445559999999996544344568999963
No 148
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=48.67 E-value=15 Score=35.73 Aligned_cols=44 Identities=23% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCcccccccccCCCCceEEeC--CCCcccHHHHHHHHh-cCCCCCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLS--CKHSYHSECINNWLK-INKVCPV 317 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP--CgH~FH~~CI~~WL~-~~ksCPv 317 (328)
+-..|.||++-...|..-..|. =.=.=|+.|..+|-. .+..||.
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 3468999998765554322222 122457999999954 5678993
No 149
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=48.34 E-value=32 Score=25.97 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=31.7
Q ss_pred cccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 020261 277 SCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 326 (328)
Q Consensus 277 ~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~~ 326 (328)
.|-.|-.++.... ...+-.=...||..|....| +.+||.|-.++...+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 4666766665443 12221113479999999876 789999998886544
No 150
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=47.50 E-value=24 Score=29.39 Aligned_cols=45 Identities=27% Similarity=0.568 Sum_probs=28.2
Q ss_pred CCcccccccccCCCCceEE------eCC---CCcccHHHHHHHHhc---------CCCCCCccc
Q 020261 275 NDSCVICRLDYEDGETLTV------LSC---KHSYHSECINNWLKI---------NKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~------LPC---gH~FH~~CI~~WL~~---------~ksCPvCR~ 320 (328)
...|-.|...-.. .++.. ..| .=.||..||..++.. .-.||.||.
T Consensus 7 g~~CHqCrqKt~~-~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLD-FKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCC-CceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 3567777664321 11222 335 777999999998843 236999986
No 151
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=47.42 E-value=9 Score=24.30 Aligned_cols=13 Identities=62% Similarity=1.132 Sum_probs=9.2
Q ss_pred CCCCCccccccCC
Q 020261 313 KVCPVCSAEVSTS 325 (328)
Q Consensus 313 ksCPvCR~eV~t~ 325 (328)
++||-|++.|+..
T Consensus 1 K~CP~C~~~V~~~ 13 (26)
T PF10571_consen 1 KTCPECGAEVPES 13 (26)
T ss_pred CcCCCCcCCchhh
Confidence 4688888877654
No 152
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=46.43 E-value=8.9 Score=41.39 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=29.5
Q ss_pred CCcccccccccC--CCCceEEeCCCCcccHHHHHHHHhcC-----CCCCCcccc
Q 020261 275 NDSCVICRLDYE--DGETLTVLSCKHSYHSECINNWLKIN-----KVCPVCSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~--~ge~v~~LPCgH~FH~~CI~~WL~~~-----ksCPvCR~e 321 (328)
...|+||-..=. .+-.+..-.|+-.||..|+..|+... -.||-||.-
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 355666643321 12123334499999999999998643 258888754
No 153
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.16 E-value=12 Score=38.48 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=4.9
Q ss_pred CCCCCccCC
Q 020261 100 EAGSYLHDE 108 (328)
Q Consensus 100 ~~~~y~~~~ 108 (328)
..+||+.++
T Consensus 267 ~~ss~~edD 275 (514)
T KOG3130|consen 267 GSSSYHEDD 275 (514)
T ss_pred CCCCccccc
Confidence 445666554
No 154
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02189 cellulose synthase
Probab=43.01 E-value=23 Score=40.37 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=35.0
Q ss_pred CCcccccccccC---CCCceEEeC-CCCcccHHHHHHHHh-cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYE---DGETLTVLS-CKHSYHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~---~ge~v~~LP-CgH~FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
...|.||-..+. .|+..+... |+--.|+.|..-=-+ .+++||-||+...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 468999998864 455444444 888899999843222 3578999998764
No 156
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.01 E-value=12 Score=40.59 Aligned_cols=42 Identities=21% Similarity=0.588 Sum_probs=29.3
Q ss_pred CcccccccccC-CCCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 276 DSCVICRLDYE-DGETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 276 ~~CaICLeef~-~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
.+|.+|...=. .....+++.|+-.||..| |+--++.||+|--
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCc
Confidence 46888875432 222445567999998888 7777889999943
No 157
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=42.97 E-value=20 Score=29.14 Aligned_cols=32 Identities=22% Similarity=0.616 Sum_probs=22.4
Q ss_pred CCcccccccccCCCCceEEeC--CCCcccHHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLTVLS--CKHSYHSECINNW 308 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP--CgH~FH~~CI~~W 308 (328)
...|.||... .|-.+.--. |...||..|...+
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4789999987 443333333 7789999998653
No 158
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.84 E-value=28 Score=27.93 Aligned_cols=49 Identities=29% Similarity=0.573 Sum_probs=20.3
Q ss_pred CCcccccccccC---CCCceE-EeCCCCcccHHHHHHHHh-cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYE---DGETLT-VLSCKHSYHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~---~ge~v~-~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
...|-||-+.+- .|+..+ .--|+-..|+.|..-=.+ .++.||-|++...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 468999988863 333222 234888889999865554 4678999997653
No 159
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.45 E-value=24 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=30.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI 311 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~ 311 (328)
...|.||-..+..|++.+..+ +-..|..|+..-+..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 467999999999999999888 667999999876544
No 160
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.29 E-value=32 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=33.6
Q ss_pred CcccccccccCCCC-----------ceEEeCCCCcccHHHHHHHHhcCCCCCCcc
Q 020261 276 DSCVICRLDYEDGE-----------TLTVLSCKHSYHSECINNWLKINKVCPVCS 319 (328)
Q Consensus 276 ~~CaICLeef~~ge-----------~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR 319 (328)
..|--|+..|..+. ......|++.||.+|=.-|-..-..||-|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 56999999886531 112334999999999888877778899996
No 161
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=41.60 E-value=25 Score=37.91 Aligned_cols=44 Identities=23% Similarity=0.492 Sum_probs=24.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHH-HHhc-C-----CCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINN-WLKI-N-----KVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~-WL~~-~-----ksCPvCR~eV~ 323 (328)
.+.|+|+...+..+ .+...|+|+ .|.+. |+.. + -.||+|.+...
T Consensus 306 SL~CPl~~~Rm~~P--~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 306 SLNCPLSKMRMSLP--ARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred EecCCcccceeecC--Ccccccccc---eecchhhhHHhccCCCeeeCccCCcccc
Confidence 36799988764433 233335554 45443 4422 1 26999988654
No 162
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.29 E-value=9.9 Score=37.57 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=27.0
Q ss_pred CCcccccccccCC-------CCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 275 NDSCVICRLDYED-------GETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~-------ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
...||||-..-.. ....+.| +|.-|-..|-..+..||.|-.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL-----~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYL-----HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEE-----EcCCCCCcccccCccCCCCCC
Confidence 4689999765311 1223333 556677788778889999965
No 163
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=40.36 E-value=12 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.721 Sum_probs=20.6
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHh--cCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK--INKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~--~~ksCPvCR~eV~ 323 (328)
..||.|-..|... .| +. .|...-.. ..-.||+|...+.
T Consensus 3 f~CP~C~~~~~~~----~L-~~-----H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 3 FTCPYCGKGFSES----SL-VE-----HCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred cCCCCCCCccCHH----HH-HH-----HHHhHCcCCCCCccCCCchhhhh
Confidence 5799998855432 12 22 22222222 2347999987544
No 164
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.24 E-value=14 Score=24.35 Aligned_cols=20 Identities=45% Similarity=0.835 Sum_probs=12.3
Q ss_pred CCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 296 CKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 296 CgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
|||+|-..- ....||+|...
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc------CCCcCcCCCCc
Confidence 666655432 34489999763
No 165
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.15 E-value=6.2 Score=34.90 Aligned_cols=42 Identities=31% Similarity=0.774 Sum_probs=24.3
Q ss_pred CCCcccccccc-cCCCCceEEeCCCCc-------ccHHHHHHHHhc-CC---CCCCccccc
Q 020261 274 SNDSCVICRLD-YEDGETLTVLSCKHS-------YHSECINNWLKI-NK---VCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLee-f~~ge~v~~LPCgH~-------FH~~CI~~WL~~-~k---sCPvCR~eV 322 (328)
...+|.||+.. |..| |||. ||..|-..--.+ ++ +|-+|+..+
T Consensus 64 ddatC~IC~KTKFADG-------~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 64 DDATCGICHKTKFADG-------CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcchhhhhhcccccc-------cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 45789999865 4444 6664 444444333222 33 588887653
No 166
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.26 E-value=29 Score=39.74 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=33.6
Q ss_pred CCcccccccccC---CCCceEEe-CCCCcccHHHHHHHH--hcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYE---DGETLTVL-SCKHSYHSECINNWL--KINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~---~ge~v~~L-PCgH~FH~~CI~~WL--~~~ksCPvCR~eV~ 323 (328)
...|-||-.++. .|+..+.. -|+--.|+.|. .+= ..++.||-||+...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 468999988864 44433333 48888999998 332 24678999998764
No 167
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=38.75 E-value=14 Score=36.48 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=35.7
Q ss_pred CCHHHHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHH
Q 020261 252 LSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINN 307 (328)
Q Consensus 252 LS~e~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~ 307 (328)
++..++..+++..++.. ....|.||.......+.+..--|-.-||.-|+.-
T Consensus 296 M~~elv~~~KTY~W~C~-----~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 296 MIPELVGQYKTYFWKCS-----SCELCRICLGPVIESEHLFCDVCDRGPHTLCVGL 346 (381)
T ss_pred cCHHHHhHHhhcchhhc-----ccHhhhccCCcccchheeccccccCCCCcccccc
Confidence 34444444444444433 4578999999988877777777999999999853
No 168
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=38.05 E-value=31 Score=27.43 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=8.7
Q ss_pred CCccCCCCCCCCCCCCCC
Q 020261 103 SYLHDEDDDFGGDGDDDD 120 (328)
Q Consensus 103 ~y~~~~~d~~~~~~d~~d 120 (328)
.|.+|-++|=.+++++++
T Consensus 40 DYdyDSd~EWeE~e~GEd 57 (77)
T PF12253_consen 40 DYDYDSDDEWEEEEEGED 57 (77)
T ss_pred ceecCCccccccCCCCcc
Confidence 366665555544344433
No 169
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=37.87 E-value=20 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=29.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+-|...+.--+.+. |-.||..+..|..|+++++.
T Consensus 34 S~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CcCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCCh
Confidence 57989988776654333 66899999999999999874
No 170
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.85 E-value=9.3 Score=39.10 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=27.7
Q ss_pred CCcccccccccCCCCc-----eEEeCCCCcccHHHHHHHHhcC
Q 020261 275 NDSCVICRLDYEDGET-----LTVLSCKHSYHSECINNWLKIN 312 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-----v~~LPCgH~FH~~CI~~WL~~~ 312 (328)
...||.|...+..... ....+|+|.||..|+..|....
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3559999988866541 1223599999999999997653
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.55 E-value=26 Score=38.76 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=29.3
Q ss_pred CCcccccccccCCC--------CceEEe-C-CCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDG--------ETLTVL-S-CKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~g--------e~v~~L-P-CgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+-|...|... +.+..+ | |+|.-|..=|.+ .+.||+|...+.
T Consensus 1131 ~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1131 DLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred CCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 35677777666422 122222 3 999999876643 689999988664
No 172
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.49 E-value=15 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.683 Sum_probs=15.3
Q ss_pred cccccccccCCCC--------ceEEeCCCCccc
Q 020261 277 SCVICRLDYEDGE--------TLTVLSCKHSYH 301 (328)
Q Consensus 277 ~CaICLeef~~ge--------~v~~LPCgH~FH 301 (328)
.|+=|...|..++ ++..-.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 5778877776543 233334777774
No 173
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.48 E-value=13 Score=37.22 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCcccccccccCCCCceEEeCCCC-cccHHHHHHH-HhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKH-SYHSECINNW-LKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH-~FH~~CI~~W-L~~~ksCPvCR~eV~ 323 (328)
..-.|.+|+..- -.+...+|+| +||..|..+- +++..+||+|-.-+.
T Consensus 135 ~ti~~iqq~tnt---~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNT---YIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred Cccchheecccc---eEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 345788887542 2234557987 5888887665 677889999977654
No 174
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=37.00 E-value=17 Score=34.93 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--CCCCCC--ccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--NKVCPV--CSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPv--CR~eV 322 (328)
...|+|-+..+..+ +....|+|+|-.+-|...|+. ...||. |.+.+
T Consensus 189 ~nrCpitl~p~~~p--ils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~ 238 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKE 238 (275)
T ss_pred cccCCcccCcchhH--HHHhhhcccccHHHHHHHhcCCceeecchhhcchhe
Confidence 46899988776544 223349999999999999985 456774 54444
No 175
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=36.90 E-value=24 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=11.1
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHH
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECI 305 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI 305 (328)
.|.+|.......-...-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 48888887665334555669999999986
No 176
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=36.87 E-value=7.2 Score=38.43 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=26.9
Q ss_pred CCcccccccccC-----C---CCceEEeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 275 NDSCVICRLDYE-----D---GETLTVLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~-----~---ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
...||||-..-. . .+..+.| +|.-|-..|-..+..||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL-----~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYL-----SCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEE-----EcCCCCCcccccCccCCCCCC
Confidence 358999976531 1 1233444 455677788778889999975
No 177
>PF15295 CCDC50_N: Coiled-coil domain-containing protein 50 N-terminus
Probab=36.76 E-value=33 Score=30.08 Aligned_cols=18 Identities=56% Similarity=0.388 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHH
Q 020261 66 VDADLALARTLQEQERAY 83 (328)
Q Consensus 66 ~~~~~~~~~~lq~qe~~~ 83 (328)
|--|-|||.-||+||+--
T Consensus 23 V~EDgaLA~~LQeqEIe~ 40 (132)
T PF15295_consen 23 VLEDGALAHRLQEQEIEH 40 (132)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 446889999999999873
No 178
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=36.61 E-value=57 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=14.8
Q ss_pred HHH-HHHhc-CCCCCCCCCCCCCC
Q 020261 82 AYM-MLRMN-NNEGSDYGSWEAGS 103 (328)
Q Consensus 82 ~~~-~~~~~-~~~~~~~~~~~~~~ 103 (328)
.-| ||+|. |+--.-||.|..-|
T Consensus 479 mKaKlLqF~~NrRP~YyGTWrKKS 502 (811)
T KOG4364|consen 479 MKAKLLQFDKNRRPGYYGTWRKKS 502 (811)
T ss_pred hHHHHhhhccccCCcccccccccc
Confidence 344 78883 33556679998776
No 179
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=35.74 E-value=10 Score=38.35 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=25.7
Q ss_pred CCCcccccccccCCCCceEEeC---CCCccc--------HHHHHHHH-----hcCCCCCCcccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS---CKHSYH--------SECINNWL-----KINKVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP---CgH~FH--------~~CI~~WL-----~~~ksCPvCR~e 321 (328)
..+.|++|-.... |=....|. |+-.|. ..|+..-- ..++.||.||..
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 3578999976642 32333444 554442 33433211 235679999964
No 180
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=35.14 E-value=22 Score=29.16 Aligned_cols=36 Identities=19% Similarity=0.646 Sum_probs=27.9
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|-||-..+.. =+|.||..|-.+ +..|.+|-..|.
T Consensus 45 ~~C~~CK~~v~q--------~g~~YCq~CAYk----kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQ--------PGAKYCQTCAYK----KGICAMCGKKIL 80 (90)
T ss_pred cccccccccccc--------CCCccChhhhcc----cCcccccCCeec
Confidence 579999866443 378899999643 779999998885
No 181
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.98 E-value=27 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.449 Sum_probs=25.2
Q ss_pred CcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh
Q 020261 276 DSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 276 ~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~ 310 (328)
..|.+|-..|..-.. .....||++|+..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 469999888865432 22234999999999987754
No 182
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=34.65 E-value=7.1 Score=38.21 Aligned_cols=37 Identities=27% Similarity=0.557 Sum_probs=30.3
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN 312 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ 312 (328)
..|.||+..|..+.....+.|-.+||..|+..|++..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 4899999999876555666676799999999999754
No 183
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=34.54 E-value=17 Score=27.01 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=17.8
Q ss_pred CCcccccccccCCCCceE-EeCCCCcccHHHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLT-VLSCKHSYHSECINNWL 309 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~-~LPCgH~FH~~CI~~WL 309 (328)
...|.+|...|..-..-. --.||++||..|....+
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 468999999996533222 23499999999987654
No 184
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.54 E-value=20 Score=40.77 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCcccccccccCCCCceEEeC-CC-----CcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLS-CK-----HSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP-Cg-----H~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
...|+-|-..... ...| || +.||..| .+......||.|..++...
T Consensus 626 ~RfCpsCG~~t~~----frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 626 RRKCPSCGKETFY----RRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred CccCCCCCCcCCc----ccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 4579988776421 3444 87 4699999 4445567899999988654
No 185
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=33.13 E-value=24 Score=29.57 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=28.5
Q ss_pred CCcccccccccC--CCCceEEeCCCCcccHHHHHHHHhcCC--CCCCccc
Q 020261 275 NDSCVICRLDYE--DGETLTVLSCKHSYHSECINNWLKINK--VCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~--~ge~v~~LPCgH~FH~~CI~~WL~~~k--sCPvCR~ 320 (328)
...|++|...|. .+.......|+|.+|..|-.. ..... .|.+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 468999998763 334556667999999999654 11112 4888764
No 186
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=32.96 E-value=21 Score=34.48 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--CCCCCcc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPVCS 319 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~--ksCPvCR 319 (328)
...|||=+..+..+ ++...|||+|-+.=|.+.+... -.||+=-
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 36799987777765 4455699999999999998764 4688743
No 187
>PRK11827 hypothetical protein; Provisional
Probab=32.63 E-value=15 Score=27.90 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=13.6
Q ss_pred HHHHhcCCCCCCcccccc
Q 020261 306 NNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 306 ~~WL~~~ksCPvCR~eV~ 323 (328)
.+||..--.||+|+.++.
T Consensus 2 d~~LLeILaCP~ckg~L~ 19 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLW 19 (60)
T ss_pred ChHHHhheECCCCCCcCe
Confidence 457777778999988775
No 188
>PLN02436 cellulose synthase A
Probab=32.40 E-value=45 Score=38.25 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=34.7
Q ss_pred CCccccccccc---CCCCceEEeC-CCCcccHHHHHHHHh-cCCCCCCcccccc
Q 020261 275 NDSCVICRLDY---EDGETLTVLS-CKHSYHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef---~~ge~v~~LP-CgH~FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
...|-||-.++ ..|+..+... |+--.|+.|..-=-+ .+++||-||+...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 46899999886 4555444444 888899999843222 3578999998764
No 189
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=32.39 E-value=10 Score=29.04 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=9.7
Q ss_pred CCCCCccccccchhHHHHHHHHHH
Q 020261 56 TRTPFTNLSQVDADLALARTLQEQ 79 (328)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~lq~q 79 (328)
+|+|||. +.|.+|+.-+.+.
T Consensus 1 gR~~fT~----edD~~l~~~v~~~ 20 (65)
T PF08914_consen 1 GRTPFTE----EDDAALLDYVKEN 20 (65)
T ss_dssp ------H----HHHHHHHHHHHHT
T ss_pred CCCCCCH----HHHHHHHHHHHHh
Confidence 6999995 6777787777654
No 190
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=32.36 E-value=57 Score=32.68 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcC
Q 020261 67 DADLALARTLQEQERAYMMLRMNN 90 (328)
Q Consensus 67 ~~~~~~~~~lq~qe~~~~~~~~~~ 90 (328)
+.|..+|.+|.+.-+++-++-+.+
T Consensus 254 ~~DyeiG~~ikd~IIP~AV~yftG 277 (337)
T PTZ00007 254 ETDYEIGITIRDKLIPYAVYWFLG 277 (337)
T ss_pred HHhHHHHHHHHHhcccccHHhhCC
Confidence 346678999999998888887764
No 191
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=31.74 E-value=24 Score=30.67 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=16.4
Q ss_pred EeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 293 VLSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 293 ~LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
.-.|||+||. -+..||.|..+
T Consensus 32 C~~CG~v~~P--------Pr~~Cp~C~~~ 52 (140)
T COG1545 32 CKKCGRVYFP--------PRAYCPKCGSE 52 (140)
T ss_pred cCCCCeEEcC--------CcccCCCCCCC
Confidence 3459999997 36679999887
No 192
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=31.46 E-value=40 Score=37.48 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcCCC
Q 020261 78 EQERAYMMLRMNNNE 92 (328)
Q Consensus 78 ~qe~~~~~~~~~~~~ 92 (328)
+-|..=-+-+++.++
T Consensus 833 ~Ee~eeel~~~~~~~ 847 (988)
T KOG2038|consen 833 DEEFEEELWRFEDGS 847 (988)
T ss_pred hHHHHHHHHHhcCCc
Confidence 334444455665543
No 193
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.74 E-value=29 Score=35.79 Aligned_cols=40 Identities=25% Similarity=0.530 Sum_probs=22.5
Q ss_pred cccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 277 SCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
.|++=+..+..|...+.-| ||-.||... ..+.||+|.-..
T Consensus 366 ICa~s~tPIY~G~~~v~CP~cgA~y~~~~------kG~lC~vC~l~~ 406 (422)
T PF06957_consen 366 ICAASYTPIYRGSPSVKCPYCGAKYHPEY------KGQLCPVCELSE 406 (422)
T ss_dssp EBTTT--EEETTS-EEE-TTT--EEEGGG------TTSB-TTTTTBB
T ss_pred eeecccccccCCCCCeeCCCCCCccChhh------CCCCCCCCccee
Confidence 3444455555676667777 999999864 567899997543
No 194
>COG3076 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.66 E-value=74 Score=27.39 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCCCCCCC
Q 020261 59 PFTNLSQVDADLALARTLQEQERAYMMLRMNNNEGSDYGSWEAGSYLHDEDDDFG 113 (328)
Q Consensus 59 ~~~~~~~~~~~~~~~~~lq~qe~~~~~~~~~~~~~~~~~~~~~~~y~~~~~d~~~ 113 (328)
=|...|+|.-+-.|--.-|+| .|-|--- -|.-|-.| |.|..+-..+++
T Consensus 73 C~Diisev~L~aeiIDaQ~e~---l~~L~Ek--~~~~YDGW--GTY~EdpnA~dd 120 (135)
T COG3076 73 CCDIISEVALNAELIDAQVEQ---LMPLAEK--FDVEYDGW--GTYFEDPNAEDD 120 (135)
T ss_pred EeehhhhhhcCHHHHHHHHHH---HHHHHHH--hCceecCc--eeeccCCCcccc
Confidence 466777776554444443333 3333221 34567644 788877644444
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.41 E-value=31 Score=32.66 Aligned_cols=23 Identities=22% Similarity=0.625 Sum_probs=16.1
Q ss_pred cHHHHHHHHhcCCCCCCcccccc
Q 020261 301 HSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 301 H~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
|..|-.+--++-..||+|+..-.
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccc
Confidence 45666555556789999998654
No 196
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=30.39 E-value=14 Score=40.26 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCcccccccccCCCC--ceEEe-----CCCCcccHHHHHHH----------HhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGE--TLTVL-----SCKHSYHSECINNW----------LKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge--~v~~L-----PCgH~FH~~CI~~W----------L~~~ksCPvCR~eV~ 323 (328)
+.+|-||-+.=+... +-..+ .|+-.||..|.... +..-+.|-+|+..+.
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred cceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 478999988733222 12233 27888999998643 123467999988764
No 197
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=26 Score=28.99 Aligned_cols=12 Identities=25% Similarity=1.046 Sum_probs=10.5
Q ss_pred ccHHHHHHHHhc
Q 020261 300 YHSECINNWLKI 311 (328)
Q Consensus 300 FH~~CI~~WL~~ 311 (328)
||+.|+..|+..
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 899999999853
No 198
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.97 E-value=3.8 Score=32.11 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=19.9
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..||+|...+... . +|.+|..|-.. +.....||-|..++-
T Consensus 2 ~~CP~C~~~L~~~------~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ------G-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE------T-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe------C-CEEECcccccc-ceecccCCCcccHHH
Confidence 4688888775432 1 56666667543 344567888887763
No 199
>PLN02400 cellulose synthase
Probab=29.74 E-value=37 Score=38.91 Aligned_cols=49 Identities=20% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCcccccccccC---CCCceE-EeCCCCcccHHHHHHHH-hcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYE---DGETLT-VLSCKHSYHSECINNWL-KINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~---~ge~v~-~LPCgH~FH~~CI~~WL-~~~ksCPvCR~eV~ 323 (328)
...|-||-.++- .|+..+ +--|+---|+.|..==- ..+++||-||+...
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 468999998864 444333 33488889999983211 23578999998764
No 200
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.49 E-value=35 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.588 Sum_probs=15.4
Q ss_pred cccccccccCCCC--------ceEEeCCCCccc
Q 020261 277 SCVICRLDYEDGE--------TLTVLSCKHSYH 301 (328)
Q Consensus 277 ~CaICLeef~~ge--------~v~~LPCgH~FH 301 (328)
.|+-|...|..++ +++.-.|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 5888888876554 233333777774
No 201
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.93 E-value=16 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=15.5
Q ss_pred EeCCCCcccHHHHHHHHhcCCCCCCccc
Q 020261 293 VLSCKHSYHSECINNWLKINKVCPVCSA 320 (328)
Q Consensus 293 ~LPCgH~FH~~CI~~WL~~~ksCPvCR~ 320 (328)
...|||.|-...-..= .....||.|..
T Consensus 8 C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 3458888875321000 12457999988
No 202
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=27.84 E-value=12 Score=36.55 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=35.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI----NKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~----~ksCPvCR~eV 322 (328)
....|.||-..-...+-+..-.|-.-||..|+.+=+.. +-+|-+|-..+
T Consensus 280 eck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 280 ECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred ecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 45679999887655555666679999999999986643 33788886544
No 203
>PF14353 CpXC: CpXC protein
Probab=27.75 E-value=47 Score=27.84 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=24.8
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc---CCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI---NKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~---~ksCPvCR~eV~ 323 (328)
.+||-|...|... +...-.-...+.-...-|.. .-+||.|...+.
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3688888777543 22112223344444444432 237999988764
No 204
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.38 E-value=8.8 Score=23.55 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=3.8
Q ss_pred CCCCCccc
Q 020261 313 KVCPVCSA 320 (328)
Q Consensus 313 ksCPvCR~ 320 (328)
+.||.|-+
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 34555544
No 205
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=27.37 E-value=37 Score=26.34 Aligned_cols=31 Identities=26% Similarity=0.708 Sum_probs=21.0
Q ss_pred CCcccccccccCCCCceEE--eCCCCcccHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLTV--LSCKHSYHSECINN 307 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~--LPCgH~FH~~CI~~ 307 (328)
...|.||... .|-.+.. -.|.-.||..|...
T Consensus 36 ~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 4689999865 2422222 23889999999765
No 206
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.29 E-value=51 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHhcCCCCCCccccccCC
Q 020261 307 NWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 307 ~WL~~~ksCPvCR~eV~t~ 325 (328)
+-|.+...|+.|++++.-+
T Consensus 80 KmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred hhhchhhccCcCCCcCccC
Confidence 3455667899999998654
No 207
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.96 E-value=76 Score=36.39 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=34.2
Q ss_pred CCCcccccccccC---CCCceEEe-CCCCcccHHHHHHHHh-cCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYE---DGETLTVL-SCKHSYHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~---~ge~v~~L-PCgH~FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
....|-||-+.+. .|+..+.. -|+--.|+.|..-=.+ .+++||-|++...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3578999988864 34433333 3888899999843222 3578999998764
No 208
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.70 E-value=29 Score=26.35 Aligned_cols=14 Identities=29% Similarity=0.935 Sum_probs=10.3
Q ss_pred CCCCCCccccccCC
Q 020261 312 NKVCPVCSAEVSTS 325 (328)
Q Consensus 312 ~ksCPvCR~eV~t~ 325 (328)
..+||+|+.++...
T Consensus 39 ~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 39 EPVCPLCKSPMVSG 52 (59)
T ss_pred CccCCCcCCccccc
Confidence 36799998887644
No 209
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=26.18 E-value=28 Score=37.20 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCCcccccccccCCC------C----ceEEeCCCCcccHHHHHHH
Q 020261 274 SNDSCVICRLDYEDG------E----TLTVLSCKHSYHSECINNW 308 (328)
Q Consensus 274 ~~~~CaICLeef~~g------e----~v~~LPCgH~FH~~CI~~W 308 (328)
....|+||.+.|..- . ..+.+.=|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 346899999998531 0 1123336899999998754
No 210
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.68 E-value=25 Score=39.10 Aligned_cols=48 Identities=15% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHH-hc-----CCCCCCcccc
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL-KI-----NKVCPVCSAE 321 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL-~~-----~ksCPvCR~e 321 (328)
+....|-.|....-+ ..-+.-.|+|.||..|+..|. +. ...|+.|+..
T Consensus 227 g~~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 227 GIREMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred Ccchhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 345789999766432 122333499999999999995 11 2357777654
No 211
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=25.65 E-value=33 Score=32.92 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=5.5
Q ss_pred CCCCCccCC
Q 020261 100 EAGSYLHDE 108 (328)
Q Consensus 100 ~~~~y~~~~ 108 (328)
+.--|+|..
T Consensus 74 ~~~~yLyps 82 (296)
T COG5242 74 QGKTYLYPS 82 (296)
T ss_pred CceEEeccC
Confidence 445577765
No 212
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=25.61 E-value=23 Score=38.83 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH
Q 020261 68 ADLALARTLQEQERA 82 (328)
Q Consensus 68 ~~~~~~~~lq~qe~~ 82 (328)
.|-+|+|-|.+=.+.
T Consensus 365 ~d~~L~~kL~eN~~~ 379 (713)
T PF03344_consen 365 SDPELARKLEENRKL 379 (713)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 456678888776664
No 213
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=25.47 E-value=24 Score=37.52 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
...|.+|+...........+. |.|.++..|+..|=.....||.|++.+...
T Consensus 260 ~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~ 311 (553)
T KOG4430|consen 260 KNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTI 311 (553)
T ss_pred ccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccc
Confidence 367999999887766666665 899999999999988889999999988754
No 214
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.42 E-value=47 Score=31.91 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=16.8
Q ss_pred ccHHHHHHHHhcCCCCCCcccccc
Q 020261 300 YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 300 FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
-|..|-.+.-+....||+|+..-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 445666665566789999987654
No 215
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.24 E-value=33 Score=21.56 Aligned_cols=10 Identities=60% Similarity=1.215 Sum_probs=7.7
Q ss_pred CCCCcccccc
Q 020261 314 VCPVCSAEVS 323 (328)
Q Consensus 314 sCPvCR~eV~ 323 (328)
.||+|.+.|.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 5899988763
No 216
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=25.17 E-value=20 Score=35.48 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=28.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
..|+-|.+.+.+...| +-.=.|+||..|. .|-+|++.+.+.
T Consensus 93 TKCsaC~~GIpPtqVV-RkAqd~VYHl~CF--------~C~iC~R~L~TG 133 (383)
T KOG4577|consen 93 TKCSACQEGIPPTQVV-RKAQDFVYHLHCF--------ACFICKRQLATG 133 (383)
T ss_pred CcchhhcCCCChHHHH-HHhhcceeehhhh--------hhHhhhcccccC
Confidence 4688888776554333 3346788999886 488888877654
No 217
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.90 E-value=63 Score=30.51 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.6
Q ss_pred HHHHHH
Q 020261 72 LARTLQ 77 (328)
Q Consensus 72 ~~~~lq 77 (328)
|+..|.
T Consensus 14 m~~LL~ 19 (240)
T PF05764_consen 14 MKKLLE 19 (240)
T ss_pred HHHHHH
Confidence 444443
No 218
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=24.53 E-value=37 Score=37.96 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.2
Q ss_pred CCCccccccccc
Q 020261 274 SNDSCVICRLDY 285 (328)
Q Consensus 274 ~~~~CaICLeef 285 (328)
....|+||+..+
T Consensus 604 dPNqCiiC~rVl 615 (958)
T KOG1074|consen 604 DPNQCIICLRVL 615 (958)
T ss_pred Cccceeeeeecc
Confidence 457899998665
No 219
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=24.32 E-value=55 Score=32.28 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.2
Q ss_pred chHHHHHHHHH
Q 020261 180 SDEAYARALQD 190 (328)
Q Consensus 180 sdE~~AR~LQ~ 190 (328)
+++-|+++-..
T Consensus 191 T~eDF~kI~~l 201 (324)
T PF05285_consen 191 TPEDFAKIREL 201 (324)
T ss_pred CHHHHHHHHHH
Confidence 44555554433
No 220
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.26 E-value=57 Score=26.04 Aligned_cols=44 Identities=23% Similarity=0.678 Sum_probs=27.5
Q ss_pred ccccccccCCCCceEEeCC--CCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 278 CVICRLDYEDGETLTVLSC--KHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPC--gH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
|--|-.++...- .-.+-| .|.||..|...- ....||.|-.++..
T Consensus 8 CECCDrDLpp~s-~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDS-TDARICTFECTFCADCAENR--LHGLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCC-CceeEEEEeeehhHhHHHHh--hcCcCCCCCchhhc
Confidence 445555554322 112223 578999999764 46789999877654
No 221
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.97 E-value=16 Score=42.52 Aligned_cols=48 Identities=23% Similarity=0.529 Sum_probs=32.2
Q ss_pred CcccccccccCC-CCceE--EeCCCCcccHHHHHHHHhcC---CCCCCcccccc
Q 020261 276 DSCVICRLDYED-GETLT--VLSCKHSYHSECINNWLKIN---KVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~-ge~v~--~LPCgH~FH~~CI~~WL~~~---ksCPvCR~eV~ 323 (328)
..|+||...... -.... +.-|.-.||..|+..|.... -.||+||....
T Consensus 1062 ~~~si~~~~~~~~~~~~~~~r~~c~~~f~~~~l~~w~s~ed~s~~~~~~r~~~~ 1115 (1312)
T KOG0803|consen 1062 REFSISHGSNDDDLPFLSCLRAFCPNKFHTECLVKWKSGEDISENCPLCRELST 1115 (1312)
T ss_pred HHhhhhccccchhhhHHHHHHHhhhhhhhchhhHHhhccccccccccchhhhhH
Confidence 457777665444 11111 22399999999999998653 37999998653
No 222
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.84 E-value=61 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.3
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHh
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~ 310 (328)
..|.||-..+..|+..+.++= -..|..|+..=..
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 479999999999887777655 6689999877543
No 223
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=23.79 E-value=20 Score=35.02 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHhc----CCCCCCccccccCCCC
Q 020261 297 KHSYHSECINNWLKI----NKVCPVCSAEVSTSGH 327 (328)
Q Consensus 297 gH~FH~~CI~~WL~~----~ksCPvCR~eV~t~~~ 327 (328)
.|.||..|-.+-... +..||.|+....+...
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~d 144 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHFPRID 144 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccCCCCC
No 224
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.75 E-value=19 Score=25.82 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=14.6
Q ss_pred ceEEe-CCCCcccHHHHHHH
Q 020261 290 TLTVL-SCKHSYHSECINNW 308 (328)
Q Consensus 290 ~v~~L-PCgH~FH~~CI~~W 308 (328)
..+.- .|+|.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 33444 59999999998888
No 225
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=35 Score=31.98 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=14.4
Q ss_pred HHHHHHHHh-cCCCCCCccccc
Q 020261 302 SECINNWLK-INKVCPVCSAEV 322 (328)
Q Consensus 302 ~~CI~~WL~-~~ksCPvCR~eV 322 (328)
..||.+--. ..+-||+||-+.
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 457877533 456899999764
No 226
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=21.67 E-value=99 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEeCCCCcccHHHHHHHHh--cCCCCCCccccccC
Q 020261 292 TVLSCKHSYHSECINNWLK--INKVCPVCSAEVST 324 (328)
Q Consensus 292 ~~LPCgH~FH~~CI~~WL~--~~ksCPvCR~eV~t 324 (328)
..+.|+|.|...=+..++. .-..||.|...+.+
T Consensus 111 ~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP 145 (218)
T cd01407 111 RCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRP 145 (218)
T ss_pred eeCCCcCCCcHHHHhHhhccCCCCcCCCCCCccCC
Confidence 4456777776542222222 23579999887654
No 227
>PRK01343 zinc-binding protein; Provisional
Probab=21.52 E-value=47 Score=25.05 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=8.9
Q ss_pred CCCCCCcccccc
Q 020261 312 NKVCPVCSAEVS 323 (328)
Q Consensus 312 ~ksCPvCR~eV~ 323 (328)
...||+|++.+.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 457999988764
No 228
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.14 E-value=1.1e+02 Score=22.67 Aligned_cols=35 Identities=9% Similarity=0.257 Sum_probs=24.1
Q ss_pred CCCcccccccccCC--CCceEEeC-CCCcccHHHHHHH
Q 020261 274 SNDSCVICRLDYED--GETLTVLS-CKHSYHSECINNW 308 (328)
Q Consensus 274 ~~~~CaICLeef~~--ge~v~~LP-CgH~FH~~CI~~W 308 (328)
+...|+.|-..... ...+.+-| ||+.+|.+-...+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA~ 64 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAAR 64 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcHHHHHH
Confidence 35689999887765 33444455 9999998865544
No 229
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.06 E-value=46 Score=36.63 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=17.9
Q ss_pred CCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 296 CKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 296 CgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
|.-.||..=..--..++..||.||++--
T Consensus 1050 C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1050 CFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred HHhhhccchhhHHHHhcCCCCccccccc
Confidence 4444555444444457889999998653
Done!