Query 020261
Match_columns 328
No_of_seqs 234 out of 1634
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 14:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 8.6E-19 2.9E-23 138.6 7.8 79 246-324 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.4E-17 4.7E-22 126.4 3.6 70 256-326 5-74 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 2.9E-15 1E-19 111.4 6.2 52 274-325 13-64 (69)
4 2ep4_A Ring finger protein 24; 99.6 3.2E-15 1.1E-19 112.7 6.0 52 274-325 14-65 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.6 2E-15 6.9E-20 107.4 4.2 50 274-323 4-54 (55)
6 2ect_A Ring finger protein 126 99.5 4.6E-15 1.6E-19 112.8 5.4 52 274-325 14-65 (78)
7 2ecm_A Ring finger and CHY zin 99.5 1.9E-14 6.6E-19 102.1 4.8 50 274-323 4-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.5 2.1E-14 7E-19 111.4 5.2 51 274-324 14-76 (81)
9 3ng2_A RNF4, snurf, ring finge 99.5 2.5E-14 8.6E-19 106.3 3.6 52 274-325 9-64 (71)
10 2ea6_A Ring finger protein 4; 99.5 4E-14 1.4E-18 104.3 4.3 51 274-324 14-68 (69)
11 1v87_A Deltex protein 2; ring- 99.4 7.1E-14 2.4E-18 113.5 6.2 51 275-325 25-95 (114)
12 2xeu_A Ring finger protein 4; 99.4 4.7E-14 1.6E-18 102.5 3.5 52 274-325 2-57 (64)
13 3dpl_R Ring-box protein 1; ubi 99.4 1E-13 3.5E-18 113.6 5.1 50 274-323 36-100 (106)
14 2d8t_A Dactylidin, ring finger 99.4 1.1E-13 3.7E-18 103.9 3.6 47 274-323 14-60 (71)
15 1chc_A Equine herpes virus-1 r 99.4 2.1E-13 7.3E-18 100.8 4.2 49 274-324 4-52 (68)
16 4ayc_A E3 ubiquitin-protein li 99.4 1.6E-13 5.4E-18 115.9 3.8 47 275-324 53-99 (138)
17 2ecn_A Ring finger protein 141 99.4 1.5E-13 5.3E-18 102.3 2.8 48 274-325 14-61 (70)
18 2djb_A Polycomb group ring fin 99.4 5E-13 1.7E-17 100.5 5.6 49 274-325 14-63 (72)
19 2csy_A Zinc finger protein 183 99.4 4.3E-13 1.5E-17 102.9 5.4 47 274-323 14-60 (81)
20 2d8s_A Cellular modulator of i 99.4 4.2E-13 1.4E-17 104.8 5.3 52 273-325 13-71 (80)
21 2ct2_A Tripartite motif protei 99.3 1E-12 3.6E-17 101.2 6.4 52 274-325 14-69 (88)
22 2ysl_A Tripartite motif-contai 99.3 1.1E-12 3.9E-17 98.0 5.6 50 274-326 19-71 (73)
23 2yur_A Retinoblastoma-binding 99.3 1E-12 3.6E-17 99.5 5.1 49 274-325 14-65 (74)
24 2ecy_A TNF receptor-associated 99.3 8.7E-13 3E-17 97.4 4.2 49 274-325 14-63 (66)
25 1t1h_A Gspef-atpub14, armadill 99.3 1.6E-12 5.6E-17 98.6 5.1 48 274-324 7-55 (78)
26 4a0k_B E3 ubiquitin-protein li 99.3 2.6E-13 9E-18 113.3 0.6 51 273-323 46-111 (117)
27 2ecw_A Tripartite motif-contai 99.3 3E-12 1E-16 97.5 6.3 49 274-325 18-72 (85)
28 3lrq_A E3 ubiquitin-protein li 99.3 1.2E-12 4E-17 105.0 3.8 47 275-324 22-70 (100)
29 2y43_A E3 ubiquitin-protein li 99.3 1.9E-12 6.6E-17 102.8 4.2 47 275-324 22-69 (99)
30 3fl2_A E3 ubiquitin-protein li 99.3 2.4E-12 8.1E-17 106.4 4.4 47 275-324 52-99 (124)
31 2ecv_A Tripartite motif-contai 99.3 3.6E-12 1.2E-16 97.0 5.0 49 274-325 18-72 (85)
32 4ap4_A E3 ubiquitin ligase RNF 99.3 2.2E-12 7.7E-17 105.6 3.7 52 274-325 6-61 (133)
33 2egp_A Tripartite motif-contai 99.2 1.2E-12 4.3E-17 99.0 1.9 48 274-324 11-65 (79)
34 2ckl_A Polycomb group ring fin 99.2 3.6E-12 1.2E-16 102.9 4.4 47 275-324 15-62 (108)
35 3ztg_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 97.8 5.9 47 274-323 12-61 (92)
36 2ysj_A Tripartite motif-contai 99.2 9.3E-12 3.2E-16 90.9 6.1 42 274-318 19-63 (63)
37 1jm7_A BRCA1, breast cancer ty 99.2 5.8E-12 2E-16 101.3 4.1 48 275-325 21-71 (112)
38 1g25_A CDK-activating kinase a 99.2 9.7E-12 3.3E-16 91.5 4.4 51 275-325 3-56 (65)
39 2ckl_B Ubiquitin ligase protei 99.2 8.3E-12 2.9E-16 107.8 4.4 48 275-324 54-102 (165)
40 2ecj_A Tripartite motif-contai 99.2 1E-11 3.5E-16 88.6 4.2 42 274-318 14-58 (58)
41 1z6u_A NP95-like ring finger p 99.2 1.1E-11 3.7E-16 106.8 4.5 48 275-325 78-126 (150)
42 3l11_A E3 ubiquitin-protein li 99.1 6.4E-12 2.2E-16 102.3 1.2 46 275-323 15-61 (115)
43 4ap4_A E3 ubiquitin ligase RNF 99.1 1.4E-11 4.8E-16 100.8 3.0 52 274-325 71-126 (133)
44 2ct0_A Non-SMC element 1 homol 99.1 3.9E-11 1.3E-15 92.7 4.5 48 275-324 15-64 (74)
45 3hct_A TNF receptor-associated 99.1 2.2E-11 7.4E-16 100.0 3.1 48 274-324 17-65 (118)
46 2kr4_A Ubiquitin conjugation f 99.1 3.6E-11 1.2E-15 94.1 4.1 48 274-324 13-60 (85)
47 1rmd_A RAG1; V(D)J recombinati 99.1 3.1E-11 1E-15 98.4 3.9 47 275-324 23-70 (116)
48 2kre_A Ubiquitin conjugation f 99.1 4.5E-11 1.5E-15 96.6 3.9 48 274-324 28-75 (100)
49 1wgm_A Ubiquitin conjugation f 99.1 8.5E-11 2.9E-15 94.6 4.1 48 274-324 21-69 (98)
50 2y1n_A E3 ubiquitin-protein li 99.0 1.6E-10 5.4E-15 113.9 4.7 47 275-324 332-379 (389)
51 3knv_A TNF receptor-associated 99.0 6E-11 2.1E-15 101.2 1.4 47 274-323 30-77 (141)
52 2c2l_A CHIP, carboxy terminus 99.0 1.3E-10 4.5E-15 105.9 3.7 48 274-324 207-255 (281)
53 1e4u_A Transcriptional repress 99.0 2.9E-10 9.8E-15 88.1 4.8 52 274-325 10-63 (78)
54 1jm7_B BARD1, BRCA1-associated 99.0 6.1E-11 2.1E-15 97.2 1.1 45 275-324 22-67 (117)
55 1bor_A Transcription factor PM 99.0 8.5E-11 2.9E-15 84.8 1.7 46 274-325 5-50 (56)
56 2vje_A E3 ubiquitin-protein li 99.0 2.7E-10 9.2E-15 84.6 3.2 46 275-323 8-56 (64)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 86.5 2.2 43 275-324 24-67 (74)
58 2yu4_A E3 SUMO-protein ligase 98.9 5.9E-10 2E-14 88.5 3.8 45 274-321 6-59 (94)
59 2vje_B MDM4 protein; proto-onc 98.9 4.7E-10 1.6E-14 83.0 3.0 46 275-323 7-55 (63)
60 3hcs_A TNF receptor-associated 98.8 9.5E-10 3.3E-14 95.2 3.1 48 274-324 17-65 (170)
61 2f42_A STIP1 homology and U-bo 98.8 2.2E-09 7.4E-14 95.7 4.0 48 274-324 105-153 (179)
62 2ecg_A Baculoviral IAP repeat- 98.8 2.2E-09 7.4E-14 81.5 2.6 42 276-324 26-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.3E-09 4.3E-14 106.1 1.3 52 274-325 307-374 (381)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.3E-08 4.5E-13 75.2 3.8 48 274-324 5-59 (60)
65 1wim_A KIAA0161 protein; ring 98.7 9.4E-09 3.2E-13 81.0 3.1 47 275-321 5-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.6 6.8E-09 2.3E-13 80.2 1.9 42 275-323 18-60 (79)
67 2ea5_A Cell growth regulator w 98.6 2.3E-08 7.8E-13 75.2 4.4 44 274-324 14-58 (68)
68 2bay_A PRE-mRNA splicing facto 98.6 2.1E-08 7.2E-13 74.2 2.7 47 275-324 3-50 (61)
69 3htk_C E3 SUMO-protein ligase 98.5 2.8E-08 9.6E-13 93.4 2.7 48 274-323 180-231 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 1.8E-08 6.1E-13 97.8 1.1 43 275-324 295-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.2E-06 4E-11 71.3 4.2 45 277-323 3-48 (101)
72 3nw0_A Non-structural maintena 98.0 3.2E-06 1.1E-10 78.0 4.2 47 275-324 180-229 (238)
73 2ko5_A Ring finger protein Z; 95.6 0.0055 1.9E-07 49.3 2.5 46 275-325 28-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 94.9 0.012 4.1E-07 46.1 2.4 34 275-308 3-36 (101)
75 2lri_C Autoimmune regulator; Z 94.8 0.018 6.1E-07 43.0 3.0 48 275-325 12-63 (66)
76 2l5u_A Chromodomain-helicase-D 90.0 0.13 4.4E-06 37.4 1.9 45 274-321 10-58 (61)
77 1f62_A Transcription factor WS 89.6 0.12 4.3E-06 35.8 1.5 44 277-320 2-49 (51)
78 1wil_A KIAA1045 protein; ring 89.5 0.19 6.4E-06 39.7 2.6 34 274-308 14-47 (89)
79 3m62_A Ubiquitin conjugation f 88.0 0.32 1.1E-05 52.9 4.0 47 275-324 891-938 (968)
80 1mm2_A MI2-beta; PHD, zinc fin 86.3 0.11 3.9E-06 37.7 -0.5 47 274-323 8-58 (61)
81 2k16_A Transcription initiatio 86.1 0.22 7.6E-06 37.2 1.1 51 275-325 18-72 (75)
82 2yql_A PHD finger protein 21A; 85.3 0.08 2.7E-06 37.8 -1.7 44 274-320 8-55 (56)
83 2ysm_A Myeloid/lymphoid or mix 82.9 0.35 1.2E-05 38.7 1.0 37 274-310 6-42 (111)
84 2lv9_A Histone-lysine N-methyl 81.9 0.42 1.4E-05 37.9 1.1 45 276-321 29-76 (98)
85 1xwh_A Autoimmune regulator; P 81.9 0.19 6.6E-06 37.0 -0.9 47 274-323 7-57 (66)
86 3v43_A Histone acetyltransfera 81.6 1.9 6.4E-05 34.7 4.9 32 275-306 5-42 (112)
87 2puy_A PHD finger protein 21A; 81.0 0.17 5.7E-06 36.5 -1.5 47 274-323 4-54 (60)
88 2yt5_A Metal-response element- 80.8 0.15 5.1E-06 37.2 -1.8 51 274-324 5-64 (66)
89 1we9_A PHD finger family prote 80.2 0.33 1.1E-05 35.1 -0.1 49 274-322 5-59 (64)
90 1weu_A Inhibitor of growth fam 79.1 0.79 2.7E-05 36.2 1.8 46 274-323 35-87 (91)
91 3i2d_A E3 SUMO-protein ligase 78.6 1.5 5.2E-05 42.8 4.0 46 275-323 249-299 (371)
92 1wem_A Death associated transc 78.5 1 3.5E-05 33.7 2.2 50 275-325 16-74 (76)
93 2e6r_A Jumonji/ARID domain-con 78.3 0.18 6E-06 39.8 -2.3 48 274-321 15-66 (92)
94 1fp0_A KAP-1 corepressor; PHD 78.0 0.86 2.9E-05 35.9 1.7 46 274-322 24-73 (88)
95 4fo9_A E3 SUMO-protein ligase 76.3 2 6.8E-05 41.9 4.0 46 275-323 215-265 (360)
96 3v43_A Histone acetyltransfera 76.0 0.57 1.9E-05 37.8 0.1 45 276-320 62-111 (112)
97 2xb1_A Pygopus homolog 2, B-ce 76.0 0.47 1.6E-05 38.2 -0.4 50 275-324 3-64 (105)
98 2kwj_A Zinc finger protein DPF 74.3 0.78 2.7E-05 37.1 0.5 33 276-308 2-41 (114)
99 3shb_A E3 ubiquitin-protein li 74.3 0.37 1.3E-05 36.9 -1.3 44 277-320 28-76 (77)
100 2cs3_A Protein C14ORF4, MY039 74.2 6.5 0.00022 30.8 5.7 37 274-311 14-52 (93)
101 1wep_A PHF8; structural genomi 73.9 3.1 0.00011 31.3 3.8 47 275-322 12-64 (79)
102 2l43_A N-teminal domain from h 73.5 0.77 2.6E-05 35.8 0.3 50 274-323 24-77 (88)
103 2e6s_A E3 ubiquitin-protein li 72.4 0.63 2.1E-05 35.5 -0.5 45 276-320 27-76 (77)
104 1wen_A Inhibitor of growth fam 72.2 1.3 4.4E-05 33.2 1.3 45 275-323 16-67 (71)
105 1x64_A Alpha-actinin-2 associa 70.4 4.2 0.00014 30.6 3.8 40 274-324 24-63 (89)
106 2ku3_A Bromodomain-containing 70.4 0.92 3.1E-05 34.1 0.1 49 274-322 15-67 (71)
107 3ask_A E3 ubiquitin-protein li 69.0 0.81 2.8E-05 41.9 -0.6 46 276-321 175-225 (226)
108 1y02_A CARP2, FYVE-ring finger 68.9 0.56 1.9E-05 38.9 -1.5 47 275-321 19-66 (120)
109 2cu8_A Cysteine-rich protein 2 68.0 3.7 0.00013 29.8 3.0 40 275-324 9-48 (76)
110 3mpx_A FYVE, rhogef and PH dom 67.9 1.1 3.7E-05 43.1 0.0 49 275-323 375-431 (434)
111 1wev_A Riken cDNA 1110020M19; 67.4 0.5 1.7E-05 36.8 -2.0 49 275-323 16-74 (88)
112 2lbm_A Transcriptional regulat 67.1 4.6 0.00016 34.3 3.8 45 273-320 61-116 (142)
113 1wew_A DNA-binding family prot 66.7 1.4 5E-05 33.2 0.5 48 275-323 16-74 (78)
114 2ysm_A Myeloid/lymphoid or mix 66.2 0.93 3.2E-05 36.1 -0.7 46 277-322 56-105 (111)
115 3asl_A E3 ubiquitin-protein li 65.9 0.98 3.4E-05 33.7 -0.6 45 277-321 20-69 (70)
116 2kgg_A Histone demethylase jar 64.4 2.4 8.3E-05 29.5 1.3 43 277-319 4-52 (52)
117 2co8_A NEDD9 interacting prote 62.2 4.3 0.00015 30.2 2.4 41 274-324 14-54 (82)
118 1weo_A Cellulose synthase, cat 62.0 11 0.00037 29.9 4.7 50 274-323 15-69 (93)
119 2kwj_A Zinc finger protein DPF 61.8 0.48 1.6E-05 38.4 -3.2 48 276-323 59-110 (114)
120 1iml_A CRIP, cysteine rich int 61.4 2.4 8.2E-05 30.9 0.8 45 274-322 26-71 (76)
121 2ri7_A Nucleosome-remodeling f 60.7 1.5 5.2E-05 37.3 -0.4 47 274-321 7-59 (174)
122 2dj7_A Actin-binding LIM prote 60.6 5.1 0.00018 29.8 2.6 39 275-323 15-53 (80)
123 2vpb_A Hpygo1, pygopus homolog 59.9 7.2 0.00025 28.6 3.2 46 274-319 7-64 (65)
124 2vnf_A ING 4, P29ING4, inhibit 59.3 1.1 3.9E-05 32.3 -1.3 42 275-320 10-58 (60)
125 1z60_A TFIIH basal transcripti 58.7 3.2 0.00011 30.3 1.1 43 276-318 16-58 (59)
126 2ayu_A Nucleosome assembly pro 57.3 1.1 3.9E-05 44.3 -2.1 22 69-90 341-362 (417)
127 3c6w_A P28ING5, inhibitor of g 56.7 1.4 4.7E-05 31.8 -1.2 42 275-320 9-57 (59)
128 2gmg_A Hypothetical protein PF 55.4 2.5 8.7E-05 34.3 0.1 27 293-324 70-96 (105)
129 2dar_A PDZ and LIM domain prot 55.2 3 0.0001 31.5 0.5 38 275-323 25-62 (90)
130 1zbd_B Rabphilin-3A; G protein 52.5 5.1 0.00018 33.5 1.5 33 274-306 54-88 (134)
131 3o70_A PHD finger protein 13; 52.2 2.1 7.3E-05 31.7 -0.8 46 274-320 18-66 (68)
132 4gne_A Histone-lysine N-methyl 51.7 6.9 0.00024 31.6 2.1 45 274-323 14-64 (107)
133 1x62_A C-terminal LIM domain p 51.6 9.6 0.00033 27.9 2.8 38 275-323 15-52 (79)
134 1dvp_A HRS, hepatocyte growth 50.6 6.6 0.00023 34.8 2.0 34 275-308 161-195 (220)
135 1x63_A Skeletal muscle LIM-pro 50.6 9.9 0.00034 27.7 2.7 41 275-324 15-55 (82)
136 1wee_A PHD finger family prote 49.8 1.3 4.6E-05 32.8 -2.3 50 275-325 16-70 (72)
137 1x4k_A Skeletal muscle LIM-pro 49.8 10 0.00035 26.9 2.6 40 276-324 6-45 (72)
138 1joc_A EEA1, early endosomal a 49.7 8.3 0.00028 31.6 2.3 34 275-308 69-103 (125)
139 1z2q_A LM5-1; membrane protein 49.4 15 0.0005 27.9 3.6 50 274-323 20-78 (84)
140 2d8z_A Four and A half LIM dom 49.3 9.7 0.00033 26.9 2.4 37 276-323 6-42 (70)
141 1wyh_A SLIM 2, skeletal muscle 48.7 8.9 0.00031 27.2 2.1 39 276-323 6-44 (72)
142 1g47_A Pinch protein; LIM doma 48.6 9.9 0.00034 27.3 2.4 41 275-324 11-51 (77)
143 2yw8_A RUN and FYVE domain-con 48.4 11 0.00038 28.4 2.7 50 274-323 18-74 (82)
144 2g6q_A Inhibitor of growth pro 47.6 2.3 8E-05 30.9 -1.2 42 275-320 11-59 (62)
145 3t7l_A Zinc finger FYVE domain 47.3 13 0.00045 28.6 3.0 47 275-321 20-73 (90)
146 3f6q_B LIM and senescent cell 47.2 7 0.00024 27.5 1.3 41 275-324 11-51 (72)
147 3fyb_A Protein of unknown func 46.5 7.7 0.00026 31.3 1.6 11 300-310 42-52 (104)
148 2o35_A Hypothetical protein DU 46.5 7.7 0.00026 31.3 1.6 11 300-310 43-53 (105)
149 1zfo_A LAsp-1; LIM domain, zin 45.2 5.5 0.00019 24.9 0.4 27 276-304 4-30 (31)
150 1nyp_A Pinch protein; LIM doma 44.5 9.6 0.00033 26.7 1.7 38 276-324 6-43 (66)
151 3ql9_A Transcriptional regulat 44.4 17 0.00057 30.4 3.4 45 274-321 56-111 (129)
152 1a7i_A QCRP2 (LIM1); LIM domai 44.3 6.6 0.00023 28.8 0.8 40 275-324 7-46 (81)
153 1wd2_A Ariadne-1 protein homol 43.1 2.9 0.0001 30.3 -1.3 38 275-312 6-48 (60)
154 1m3v_A FLIN4, fusion of the LI 42.9 21 0.00073 28.3 3.8 48 276-324 33-81 (122)
155 2zd7_A VPS75, vacuolar protein 42.9 9.3 0.00032 35.3 1.8 24 66-89 194-217 (264)
156 2d8x_A Protein pinch; LIM doma 42.5 10 0.00035 26.8 1.6 37 276-323 6-42 (70)
157 1wfk_A Zinc finger, FYVE domai 41.8 21 0.00071 27.5 3.4 48 275-322 9-64 (88)
158 1x4l_A Skeletal muscle LIM-pro 41.7 12 0.00042 26.6 1.9 40 275-323 5-46 (72)
159 2ct7_A Ring finger protein 31; 41.5 2.3 8E-05 32.5 -2.2 17 292-308 44-61 (86)
160 1x61_A Thyroid receptor intera 40.9 19 0.00064 25.5 2.8 13 297-309 53-65 (72)
161 3pwf_A Rubrerythrin; non heme 40.9 11 0.00037 32.5 1.8 21 294-321 142-162 (170)
162 1x68_A FHL5 protein; four-and- 40.9 13 0.00046 26.8 2.1 39 276-323 6-46 (76)
163 2zet_C Melanophilin; complex, 40.3 11 0.00039 32.1 1.8 45 275-320 68-116 (153)
164 3zyq_A Hepatocyte growth facto 40.3 12 0.00042 33.4 2.1 49 275-323 164-221 (226)
165 2l4z_A DNA endonuclease RBBP8, 39.7 16 0.00054 29.5 2.5 39 275-323 61-99 (123)
166 4fp9_B Mterf domain-containing 39.2 6.3 0.00022 37.6 0.0 28 96-123 283-310 (335)
167 2rsd_A E3 SUMO-protein ligase 38.6 1.5 5.1E-05 32.3 -3.5 45 276-321 11-65 (68)
168 1wig_A KIAA1808 protein; LIM d 38.3 15 0.00053 26.5 2.0 25 277-304 7-31 (73)
169 3o7a_A PHD finger protein 13 v 38.2 3.3 0.00011 28.7 -1.6 41 280-320 8-51 (52)
170 1x4i_A Inhibitor of growth pro 37.6 8.8 0.0003 28.5 0.6 44 275-322 6-56 (70)
171 2d8y_A Eplin protein; LIM doma 37.2 16 0.00056 27.3 2.1 27 276-304 16-42 (91)
172 2cur_A Skeletal muscle LIM-pro 36.5 15 0.00051 25.9 1.7 37 276-323 6-42 (69)
173 1x4u_A Zinc finger, FYVE domai 36.4 28 0.00095 26.3 3.3 35 274-308 13-48 (84)
174 2cor_A Pinch protein; LIM doma 36.3 23 0.00079 25.9 2.8 38 275-323 15-52 (79)
175 2l3k_A Rhombotin-2, linker, LI 36.2 11 0.00036 30.2 0.9 36 274-310 35-70 (123)
176 2jvx_A NF-kappa-B essential mo 35.7 9.4 0.00032 23.9 0.4 11 313-323 4-14 (28)
177 3kv5_D JMJC domain-containing 35.2 6 0.0002 39.8 -0.9 47 275-322 37-89 (488)
178 1vfy_A Phosphatidylinositol-3- 34.2 21 0.00071 26.3 2.2 33 276-308 12-45 (73)
179 2pk7_A Uncharacterized protein 34.2 8 0.00027 28.9 -0.1 18 306-323 2-19 (69)
180 3mjh_B Early endosome antigen 33.8 12 0.00042 24.3 0.7 8 315-322 8-15 (34)
181 2cuq_A Four and A half LIM dom 33.1 20 0.00067 26.0 1.9 37 276-323 16-52 (80)
182 1m3v_A FLIN4, fusion of the LI 33.0 29 0.001 27.4 3.1 39 275-323 5-43 (122)
183 1v6g_A Actin binding LIM prote 32.7 17 0.00058 26.5 1.5 37 276-323 16-52 (81)
184 2lcq_A Putative toxin VAPC6; P 32.1 12 0.00041 31.5 0.6 26 292-323 134-159 (165)
185 2jmi_A Protein YNG1, ING1 homo 31.9 7.2 0.00024 30.6 -0.8 42 275-320 26-75 (90)
186 2ayu_A Nucleosome assembly pro 31.9 9.7 0.00033 37.7 0.0 16 70-85 332-348 (417)
187 2jny_A Uncharacterized BCR; st 31.2 7.2 0.00025 29.0 -0.8 18 306-323 4-21 (67)
188 1lko_A Rubrerythrin all-iron(I 30.2 14 0.00048 32.2 0.7 9 313-321 172-180 (191)
189 2a20_A Regulating synaptic mem 29.6 2.5 8.7E-05 31.1 -3.4 47 274-320 8-59 (62)
190 2pv0_B DNA (cytosine-5)-methyl 29.5 37 0.0013 33.2 3.6 44 274-320 92-147 (386)
191 2xjy_A Rhombotin-2; oncoprotei 29.2 38 0.0013 26.7 3.1 48 275-323 29-77 (131)
192 1j2o_A FLIN2, fusion of rhombo 29.2 29 0.001 27.1 2.4 36 274-310 29-65 (114)
193 2dlo_A Thyroid receptor-intera 29.0 18 0.0006 26.4 1.0 37 276-323 16-52 (81)
194 1x3h_A Leupaxin; paxillin fami 28.5 18 0.0006 26.2 0.9 38 276-324 16-53 (80)
195 2d8v_A Zinc finger FYVE domain 28.5 35 0.0012 25.5 2.5 30 275-308 8-38 (67)
196 2fiy_A Protein FDHE homolog; F 26.8 3.6 0.00012 39.1 -4.0 43 274-321 181-231 (309)
197 2kdx_A HYPA, hydrogenase/ureas 26.7 21 0.00073 28.6 1.2 27 290-322 73-100 (119)
198 2egq_A FHL1 protein; LIM domai 26.7 25 0.00085 25.2 1.5 41 275-324 15-58 (77)
199 2ehe_A Four and A half LIM dom 26.5 26 0.00087 25.5 1.5 39 276-323 16-54 (82)
200 3mkr_B Coatomer subunit alpha; 26.4 37 0.0013 32.4 3.0 39 277-321 264-303 (320)
201 2rgt_A Fusion of LIM/homeobox 26.4 34 0.0011 28.6 2.4 41 277-326 67-107 (169)
202 1b8t_A Protein (CRP1); LIM dom 26.4 22 0.00074 30.5 1.2 43 276-322 143-185 (192)
203 1rut_X Flinc4, fusion protein 25.8 38 0.0013 28.8 2.7 40 278-326 72-111 (188)
204 3a1b_A DNA (cytosine-5)-methyl 25.7 48 0.0016 28.6 3.3 43 274-320 78-133 (159)
205 1yuz_A Nigerythrin; rubrythrin 25.6 21 0.00073 31.5 1.1 15 39-53 29-43 (202)
206 1fex_A TRF2-interacting telome 23.9 37 0.0013 24.2 1.9 19 56-78 1-19 (59)
207 2jr6_A UPF0434 protein NMA0874 23.5 7.7 0.00027 28.9 -1.9 16 308-323 4-19 (68)
208 2kpi_A Uncharacterized protein 23.2 8 0.00027 27.7 -1.8 16 307-322 5-20 (56)
209 2vrw_B P95VAV, VAV1, proto-onc 23.1 39 0.0014 31.9 2.5 33 275-307 357-391 (406)
210 3mv2_A Coatomer subunit alpha; 22.7 41 0.0014 32.2 2.4 38 278-321 274-312 (325)
211 2cup_A Skeletal muscle LIM-pro 22.2 60 0.002 24.3 2.9 46 275-324 33-78 (101)
212 3vhs_A ATPase wrnip1; zinc fin 22.1 23 0.00079 21.9 0.4 10 314-323 8-17 (29)
213 2jtn_A LIM domain-binding prot 21.7 34 0.0012 28.9 1.6 45 274-323 86-130 (182)
214 1l8d_A DNA double-strand break 21.1 25 0.00084 27.5 0.5 9 314-322 49-57 (112)
215 2hf1_A Tetraacyldisaccharide-1 21.0 7.7 0.00026 28.9 -2.3 16 308-323 4-19 (68)
216 2js4_A UPF0434 protein BB2007; 20.3 8.5 0.00029 28.8 -2.3 16 308-323 4-19 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-19 Score=138.64 Aligned_cols=79 Identities=27% Similarity=0.621 Sum_probs=70.7
Q ss_pred CCCCCCCCHHHHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 246 GSESRGLSADTLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 246 g~~s~GLS~e~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
+...+|++++.|.+||.+++............|+||++.|..+..+++|||+|.||..||..||+.+.+||+||+.+.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567899999999999999887665555678899999999999999999999999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=126.43 Aligned_cols=70 Identities=33% Similarity=0.883 Sum_probs=59.8
Q ss_pred HHhcCCceeccCCCCCCCCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 020261 256 TLATLPTVNYKGGTSQNGSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 326 (328)
Q Consensus 256 ~I~sLp~~~~~~~~~~~~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~~ 326 (328)
.+..||.+++..... ......|+||++.|..+..++.|||+|.||..||.+||+.+.+||+||+.+.++.
T Consensus 5 ~i~~lp~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNH-QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp CCSSCCCEEBCSSSC-SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hHhhCCcEEecCccc-cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 456788888875442 2345789999999999999999999999999999999999999999999998654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=111.43 Aligned_cols=52 Identities=35% Similarity=0.940 Sum_probs=47.7
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+..++.+||+|.||..||.+|++.+.+||+||+.|...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4578999999998888899999999999999999999999999999998754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-15 Score=112.67 Aligned_cols=52 Identities=33% Similarity=0.926 Sum_probs=47.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+..+++|||+|.||..||.+||+.+++||+||+.|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4578999999999998999999999999999999999999999999998643
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=2e-15 Score=107.40 Aligned_cols=50 Identities=36% Similarity=0.948 Sum_probs=46.3
Q ss_pred CCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|+||++.|..++.++.+| |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3578999999999988889998 9999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=4.6e-15 Score=112.83 Aligned_cols=52 Identities=37% Similarity=0.912 Sum_probs=47.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+..+++|+|+|.||..||.+||+.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 4578999999999988889999999999999999999999999999998754
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.49 E-value=1.9e-14 Score=102.12 Aligned_cols=50 Identities=34% Similarity=0.666 Sum_probs=44.0
Q ss_pred CCCcccccccccCCC-CceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|+||++.|..+ ..+++++|+|.||..||.+|++.+.+||+||+.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 357899999999654 45788899999999999999999999999999875
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=111.36 Aligned_cols=51 Identities=35% Similarity=0.913 Sum_probs=41.9
Q ss_pred CCCcccccccccCC-----------CCceEEeC-CCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYED-----------GETLTVLS-CKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~-----------ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..|.. ++.+++++ |+|.||..||.+||+.+++||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 35678888888854 44566665 99999999999999999999999998753
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.46 E-value=2.5e-14 Score=106.34 Aligned_cols=52 Identities=27% Similarity=0.656 Sum_probs=45.7
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~g----e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+ ..++.++|||.||..||.+|++.+++||+||+.+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 457899999998653 5668899999999999999999999999999998754
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4e-14 Score=104.34 Aligned_cols=51 Identities=27% Similarity=0.668 Sum_probs=44.5
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~g----e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||++.|..+ ..+++++|+|.||..||..||..+.+||+||+.|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 457899999998753 455889999999999999999999999999998864
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.45 E-value=7.1e-14 Score=113.46 Aligned_cols=51 Identities=20% Similarity=0.518 Sum_probs=42.1
Q ss_pred CCcccccccccCCCC---------------ceEEeCCCCcccHHHHHHHH-----hcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWL-----KINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge---------------~v~~LPCgH~FH~~CI~~WL-----~~~ksCPvCR~eV~t~ 325 (328)
...|+||++.|..+. .+++++|+|.||..||..|| ..+.+||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 468999999997653 44578999999999999999 4567999999988643
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.43 E-value=4.7e-14 Score=102.48 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=45.2
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~g----e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+ ..++.++|||.||..||.+|++.+.+||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 357899999998753 4567889999999999999999999999999998754
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.42 E-value=1e-13 Score=113.62 Aligned_cols=50 Identities=38% Similarity=0.754 Sum_probs=43.5
Q ss_pred CCCcccccccccCCCC---------------ceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge---------------~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|+||++.|..+. .++.++|+|.||..||.+||+.+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578999999998541 3677899999999999999999999999999853
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=103.91 Aligned_cols=47 Identities=26% Similarity=0.593 Sum_probs=42.7
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|+||++.|..+ +++||+|.||..||..|+..+.+||+||+.|.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 457899999998765 78899999999999999999999999999885
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=2.1e-13 Score=100.82 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..+..+ ++.+||||.||..||..|++.+++||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 357899999998753 5788999999999999999999999999998864
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=1.6e-13 Score=115.88 Aligned_cols=47 Identities=34% Similarity=0.920 Sum_probs=42.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +++||||.||..||..|+..+.+||+||+.+..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35799999999876 789999999999999999999999999999864
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=102.31 Aligned_cols=48 Identities=29% Similarity=0.880 Sum_probs=43.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||+..+.. +++||+|.||..||..|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 45789999999876 7899999999999999999999999999998754
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5e-13 Score=100.51 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+ +++ +|+|.||..||..|++.+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 357899999999875 555 9999999999999999999999999998654
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.3e-13 Score=102.86 Aligned_cols=47 Identities=21% Similarity=0.620 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|+||+..|..+ +++||+|.||..||..|+....+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 457899999999775 67999999999999999999999999999875
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=104.81 Aligned_cols=52 Identities=31% Similarity=0.794 Sum_probs=44.3
Q ss_pred CCCCcccccccccCCCCceEEeCCC-----CcccHHHHHHHHhcC--CCCCCccccccCC
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCK-----HSYHSECINNWLKIN--KVCPVCSAEVSTS 325 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCg-----H~FH~~CI~~WL~~~--ksCPvCR~eV~t~ 325 (328)
.....|+||++.|..+..+ ++||+ |.||..||.+||..+ .+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4557899999999877666 68996 999999999999876 4899999998754
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=101.20 Aligned_cols=52 Identities=23% Similarity=0.567 Sum_probs=44.7
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHhcC---CCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLKIN---KVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~~~---ksCPvCR~eV~t~ 325 (328)
....|+||+..|..... .++++|||.||..||..|+..+ .+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45789999999987553 6788999999999999999876 7999999988643
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=98.00 Aligned_cols=50 Identities=22% Similarity=0.486 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCCCccccccCCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVCSAEVSTSG 326 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~ksCPvCR~eV~t~~ 326 (328)
....|+||+..|..+ ++++|||.||..||..|++ .+..||+||+.+....
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 457899999999865 7789999999999999997 4568999999987654
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=99.52 Aligned_cols=49 Identities=31% Similarity=0.663 Sum_probs=42.6
Q ss_pred CCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC--CCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN--KVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~--ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+ +++| |||.||..||..|+..+ .+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 357899999999877 7799 99999999999999865 6899999986543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.7e-13 Score=97.43 Aligned_cols=49 Identities=18% Similarity=0.497 Sum_probs=42.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t~ 325 (328)
....|+||+..+..+ ++++|||.||..||..|+. .+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 457899999999877 5589999999999999994 567999999998754
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.6e-12 Score=98.62 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ ++++|||.||..||..||.. +.+||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457899999999876 77899999999999999987 7899999998864
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.30 E-value=2.6e-13 Score=113.33 Aligned_cols=51 Identities=37% Similarity=0.710 Sum_probs=1.4
Q ss_pred CCCCcccccccccCCCC---------------ceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 273 GSNDSCVICRLDYEDGE---------------TLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge---------------~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
.....|+||++.|..+. .++.++|+|.||..||.+||+.+++||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 34578999999997531 3344689999999999999999999999999854
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=3e-12 Score=97.45 Aligned_cols=49 Identities=24% Similarity=0.530 Sum_probs=43.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc------CCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI------NKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~------~ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+ +++||+|.||..||..|+.. ...||+||+.+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 457899999999877 68899999999999999987 67899999998643
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=104.96 Aligned_cols=47 Identities=28% Similarity=0.625 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCceEE-eCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTV-LSCKHSYHSECINNWLKIN-KVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~-LPCgH~FH~~CI~~WL~~~-ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +. ++|||.||..||..|+..+ .+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46899999999865 56 8999999999999999987 699999999864
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=102.80 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +++ +|||.||..||..|+..+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999999875 555 899999999999999999999999998864
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=106.37 Aligned_cols=47 Identities=17% Similarity=0.531 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~t 324 (328)
...|+||+..|..+ +++||||.||..||..|+..+. +||+||+.+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46899999999876 7789999999999999998554 99999999875
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.6e-12 Score=97.01 Aligned_cols=49 Identities=27% Similarity=0.563 Sum_probs=42.9
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc------CCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI------NKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~------~ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+ +++||+|.||..||..|+.. ...||+||+.+...
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 457899999999876 66799999999999999987 78999999998743
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.25 E-value=2.2e-12 Score=105.58 Aligned_cols=52 Identities=27% Similarity=0.656 Sum_probs=45.5
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~g----e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+ ..+++++|||.||..||.+||+.+++||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 457899999998754 4568899999999999999999999999999998644
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=99.02 Aligned_cols=48 Identities=31% Similarity=0.534 Sum_probs=42.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-------CCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-------NKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-------~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ +++||||.||..||..|+.. ...||+||+.+..
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 457899999999876 56899999999999999986 5689999999864
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=3.6e-12 Score=102.88 Aligned_cols=47 Identities=34% Similarity=0.822 Sum_probs=42.2
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +++ +|||.||..||..|+..+.+||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 57899999999765 555 999999999999999999999999999874
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.24 E-value=7.5e-12 Score=97.80 Aligned_cols=47 Identities=32% Similarity=0.678 Sum_probs=41.5
Q ss_pred CCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC--CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN--KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~--ksCPvCR~eV~ 323 (328)
....|+||+..|..+ +++| |||.||..||..|+..+ ..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 457899999999887 7899 99999999999999754 58999999873
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.3e-12 Score=90.90 Aligned_cols=42 Identities=24% Similarity=0.534 Sum_probs=37.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCCCc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVC 318 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~ksCPvC 318 (328)
....|+||+..|..+ ++++|||.||..||..|++ .+.+||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 457899999999876 7789999999999999998 45689998
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=5.8e-12 Score=101.32 Aligned_cols=48 Identities=23% Similarity=0.564 Sum_probs=41.6
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC---CCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK---VCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k---sCPvCR~eV~t~ 325 (328)
...|+||+..|..+ +++||||.||..||..|+..++ +||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 36899999999876 5689999999999999998764 899999988753
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=9.7e-12 Score=91.48 Aligned_cols=51 Identities=24% Similarity=0.603 Sum_probs=41.7
Q ss_pred CCccccccc-ccCCCCc-eEEeCCCCcccHHHHHHHHhc-CCCCCCccccccCC
Q 020261 275 NDSCVICRL-DYEDGET-LTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLe-ef~~ge~-v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~t~ 325 (328)
...|+||+. .|..+.. +++++|||.||..||.+|+.. ...||+||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 468999999 7776643 356799999999999999765 46899999998754
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=8.3e-12 Score=107.84 Aligned_cols=48 Identities=29% Similarity=0.647 Sum_probs=40.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +.+++|||.||..||..||.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 35899999999864 333499999999999999997 7789999998853
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=88.63 Aligned_cols=42 Identities=29% Similarity=0.860 Sum_probs=36.6
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCCCc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVC 318 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~ksCPvC 318 (328)
....|+||++.|..+ ++++|+|.||..||..|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457899999999887 6689999999999999954 56789998
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=106.77 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=42.4
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~t~ 325 (328)
...|+||+..|..+ +++||||.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 36899999999876 7799999999999999998765 899999998754
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.14 E-value=6.4e-12 Score=102.32 Aligned_cols=46 Identities=26% Similarity=0.589 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~ 323 (328)
...|+||+..|..+ ++++|||.||..||..|+.. +.+||+||+.+.
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 46899999999876 78899999999999999976 668999999875
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.4e-11 Score=100.79 Aligned_cols=52 Identities=27% Similarity=0.656 Sum_probs=44.8
Q ss_pred CCCcccccccccCCC----CceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDG----ETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~g----e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||++.|..+ ..++.++|||.||..||.+||+.+++||+||+.+...
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 457899999998753 3457889999999999999999999999999998643
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=3.9e-11 Score=92.70 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--CCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~--ksCPvCR~eV~t 324 (328)
...|+||+..|..+. +...|+|.||..||.+||+.+ .+||+||+.+..
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 478999999998763 333799999999999999887 899999998764
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=2.2e-11 Score=100.00 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~t 324 (328)
....|+||+..|..+ ++++|||.||..||..|+..++ +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 357899999999876 7789999999999999998765 99999998864
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=3.6e-11 Score=94.13 Aligned_cols=48 Identities=10% Similarity=-0.043 Sum_probs=43.9
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ ++++|||.|++.||..||..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 357899999999998 889999999999999999988999999998753
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=3.1e-11 Score=98.42 Aligned_cols=47 Identities=34% Similarity=0.615 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +.++|||.||..||..|+.. +.+||+||+.+..
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 36899999999876 67899999999999999987 6799999999864
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.09 E-value=4.5e-11 Score=96.60 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=44.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ +++||||.|++.||..||..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 357899999999998 889999999999999999988999999998864
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.05 E-value=8.5e-11 Score=94.65 Aligned_cols=48 Identities=15% Similarity=0.047 Sum_probs=44.0
Q ss_pred CCCcccccccccCCCCceEEeCCC-CcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCK-HSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCg-H~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..|..+ ++++|| |.|++.||..||..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 357899999999998 889999 999999999999988899999998864
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.01 E-value=1.6e-10 Score=113.90 Aligned_cols=47 Identities=26% Similarity=0.688 Sum_probs=41.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHh-cCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK-INKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t 324 (328)
...|+||++.+..+ +.+||||.||..||..|+. .+.+||+||+.+..
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 36899999998664 8899999999999999998 78899999998863
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=6e-11 Score=101.22 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=41.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~ 323 (328)
....|+||+..|..+ +.++|||.||..||..|+...+ +||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 457899999999887 6789999999999999998665 8999999763
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=1.3e-10 Score=105.94 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-KVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~-ksCPvCR~eV~t 324 (328)
....|+||+..|..+ +++||||+||+.||..||..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 457899999999988 889999999999999999864 459999998863
No 53
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=2.9e-10 Score=88.12 Aligned_cols=52 Identities=17% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh-cCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK-INKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~t~ 325 (328)
....|+||++.+...+. +..++|||.||..||..|+. ....||+||+.+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 45789999998864332 22245999999999999875 356899999998754
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=6.1e-11 Score=97.17 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=40.2
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..|..+ +++ +|||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 47899999999877 677 9999999999999987 889999999853
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=8.5e-11 Score=84.82 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
....|+||+..|..+ ++|||||.||..||..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 457899999999877 78999999999999884 67899999998754
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.96 E-value=2.7e-10 Score=84.60 Aligned_cols=46 Identities=30% Similarity=0.629 Sum_probs=39.8
Q ss_pred CCcccccccccCCCCceEEe--CCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVL--SCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L--PCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||++.+... +.+ ||||. ||..|+..|++.++.||+||+.|.
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 46899999987654 444 99999 899999999999999999999875
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=2.7e-10 Score=86.55 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=37.8
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..+... +.+||||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 36899999988765 78899999 999999998 899999998863
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=5.9e-10 Score=88.49 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCcccccccccCCCCceEEeC-CCCcccHHHHHHHHhcC------CCCCC--cccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKIN------KVCPV--CSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~------ksCPv--CR~e 321 (328)
....|+||+..|..+ ++++ |||.|++.||..||..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457899999999987 7886 99999999999999754 48999 9865
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.91 E-value=4.7e-10 Score=83.02 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCceEEe--CCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVL--SCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L--PCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||++.+... +.+ ||||. ||..|+..|.+.++.||+||+.|.
T Consensus 7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46899999986553 444 99998 999999999998899999999885
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.84 E-value=9.5e-10 Score=95.16 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=42.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC-CCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK-VCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV~t 324 (328)
....|+||+..|..+ +.++|||.||..||..|+..++ +||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 357899999999877 6789999999999999998654 99999998864
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.80 E-value=2.2e-09 Score=95.67 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-CCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-KVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~-ksCPvCR~eV~t 324 (328)
....||||+..|..+ +++||||.|++.||..||..+ .+||+||.++..
T Consensus 105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 357899999999988 888999999999999999864 479999998754
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.2e-09 Score=81.53 Aligned_cols=42 Identities=21% Similarity=0.503 Sum_probs=36.0
Q ss_pred CcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+||+..+... +.+||||. ||..|+.. ...||+||+.+..
T Consensus 26 ~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 5799999998765 67899999 99999964 4789999998865
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.76 E-value=1.3e-09 Score=106.14 Aligned_cols=52 Identities=33% Similarity=0.667 Sum_probs=40.5
Q ss_pred CCCcccccccccCCCCceE-----EeCCCCcccHHHHHHHHhcC-----------CCCCCccccccCC
Q 020261 274 SNDSCVICRLDYEDGETLT-----VLSCKHSYHSECINNWLKIN-----------KVCPVCSAEVSTS 325 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~-----~LPCgH~FH~~CI~~WL~~~-----------ksCPvCR~eV~t~ 325 (328)
....|+||+..+..+..+. ..+|+|.||..||.+||+.. +.||+||++|.++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4578999999998733222 24699999999999999752 4699999998753
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.66 E-value=1.3e-08 Score=75.17 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=37.9
Q ss_pred CCCcccccccccCCCCceEEeCCC--C---cccHHHHHHHHhc--CCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCK--H---SYHSECINNWLKI--NKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCg--H---~FH~~CI~~WL~~--~ksCPvCR~eV~t 324 (328)
....|.||+.... +.+ ++||. | .||..||.+||.. +.+||+||+.+..
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4578999999743 334 68965 4 9999999999975 5789999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=9.4e-09 Score=80.98 Aligned_cols=47 Identities=19% Similarity=0.668 Sum_probs=39.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc--------CCCCCC--cccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI--------NKVCPV--CSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~--------~ksCPv--CR~e 321 (328)
..+|+||++.|..+..+..++|+|.||..||..|+.. .-.||. ||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4689999999987655555689999999999999963 137999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=6.8e-09 Score=80.19 Aligned_cols=42 Identities=26% Similarity=0.675 Sum_probs=36.1
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+||+..+... +.+||||. ||..|+..| ..||+||+.+.
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 35799999987654 88999999 999999877 49999999875
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.3e-08 Score=75.19 Aligned_cols=44 Identities=25% Similarity=0.711 Sum_probs=37.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+||+..+... +.+||+|. ||..|+.. .+.||+||+.|..
T Consensus 14 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 357899999987654 88999999 99999983 5799999998863
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=2.1e-08 Score=74.16 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||++.|..+ +++ +|||.|.+.||.+||+.+.+||+++..+..
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 36799999999977 677 899999999999999988899999998753
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.8e-08 Score=93.39 Aligned_cols=48 Identities=33% Similarity=0.589 Sum_probs=40.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC--CCCCC--cccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN--KVCPV--CSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~--ksCPv--CR~eV~ 323 (328)
....||||+..|..+ |+.+.|||.||+.||..|+..+ .+||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 357899999999877 3335899999999999999764 47999 999775
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.51 E-value=1.8e-08 Score=97.82 Aligned_cols=43 Identities=21% Similarity=0.600 Sum_probs=38.0
Q ss_pred CCcccccccccCCCCceEEeCCCCc-ccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHS-YHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~-FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+||+..+..+ +.+||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 46899999998765 78899999 999999988 789999998853
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.17 E-value=1.2e-06 Score=71.34 Aligned_cols=45 Identities=31% Similarity=0.596 Sum_probs=37.9
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhc-CCCCCCcccccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-NKVCPVCSAEVS 323 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-~ksCPvCR~eV~ 323 (328)
.|.+|--.+. ...+.+||+|.||..|+..|.++ .++||+|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888876654 45688999999999999999865 689999999885
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.01 E-value=3.2e-06 Score=78.03 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=39.2
Q ss_pred CCcccccccccCCCCceEEe-CCCCcccHHHHHHHHhcCC--CCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVL-SCKHSYHSECINNWLKINK--VCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L-PCgH~FH~~CI~~WL~~~k--sCPvCR~eV~t 324 (328)
-..|.||.+.+..+ ..- .|+|.||..|+..|++.+. .||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 57899999998876 333 3999999999999998654 89999998753
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.60 E-value=0.0055 Score=49.31 Aligned_cols=46 Identities=22% Similarity=0.673 Sum_probs=38.2
Q ss_pred CCcccccccccCCCCceEEeCC-CCcccHHHHHHHHhcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSC-KHSYHSECINNWLKINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPC-gH~FH~~CI~~WL~~~ksCPvCR~eV~t~ 325 (328)
-..|-.|+-.++. .+.| .|++|..|+...|..+..||+|+..+++.
T Consensus 28 ~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 28 PQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 4689999966542 3344 79999999999999999999999999875
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.88 E-value=0.012 Score=46.09 Aligned_cols=34 Identities=26% Similarity=0.564 Sum_probs=26.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNW 308 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~W 308 (328)
...|.||+..|........++|+|.||..||..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4689999987544444455999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.78 E-value=0.018 Score=43.02 Aligned_cols=48 Identities=21% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC----CCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK----VCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k----sCPvCR~eV~t~ 325 (328)
...|.||.. .++.+.--.|...||..|+.+.|.... .||.|+....+.
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp TCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCC
T ss_pred CCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccC
Confidence 467999974 344444445999999999999886542 799998766543
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.97 E-value=0.13 Score=37.43 Aligned_cols=45 Identities=29% Similarity=0.731 Sum_probs=32.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~e 321 (328)
....|.||... +..+..-.|...||..|+.+-|... =.||.|+..
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45789999863 4444444599999999999865432 279999864
No 77
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.60 E-value=0.12 Score=35.81 Aligned_cols=44 Identities=27% Similarity=0.619 Sum_probs=30.5
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSA 320 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~ 320 (328)
.|.||...-..+..+.--.|...||..|+.+=|... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444444445699999999997644332 26999975
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=89.50 E-value=0.19 Score=39.68 Aligned_cols=34 Identities=15% Similarity=0.651 Sum_probs=24.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHH
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNW 308 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~W 308 (328)
....|.||-. |.....+..--|+-.||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 4689999964 444433333338999999999996
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=87.96 E-value=0.32 Score=52.86 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=42.2
Q ss_pred CCcccccccccCCCCceEEeCCC-CcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCK-HSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCg-H~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|||-++-|..+ +++|.| +.|-+.+|.+||..+.+||+=|+++..
T Consensus 891 ~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 46799999999998 899997 689999999999999999999988753
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.28 E-value=0.11 Score=37.73 Aligned_cols=47 Identities=32% Similarity=0.653 Sum_probs=33.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
....|.||.. .+..+..-.|...||..|+.+-|... =.||.|+....
T Consensus 8 ~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCcCCCCCC---CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4578999985 34444444599999999998755432 26999987654
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.11 E-value=0.22 Score=37.21 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=35.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhc----CCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI----NKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~----~ksCPvCR~eV~t~ 325 (328)
...|.||.........|..-.|.--||..||..-+.. .-.||.|+..+...
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4579999877543234444459999999999765532 23699998876543
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.30 E-value=0.08 Score=37.77 Aligned_cols=44 Identities=34% Similarity=0.831 Sum_probs=31.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC----CCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK----VCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k----sCPvCR~ 320 (328)
....|.||... +..+..-.|...||..|+.+-|.... .||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45789999864 44444456999999999987554322 5888864
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.95 E-value=0.35 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=26.9
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~ 310 (328)
....|.||...=...+.+.--.|...||..||..++.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4678999987633222355556999999999988764
No 84
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.93 E-value=0.42 Score=37.92 Aligned_cols=45 Identities=22% Similarity=0.529 Sum_probs=31.8
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc---CCCCCCcccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI---NKVCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~---~ksCPvCR~e 321 (328)
..| ||......+..|..-.|.--||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 467 89877666655555569999999999763322 1279999753
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.87 E-value=0.19 Score=36.98 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=33.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
....|.||... +..+..-.|...||..|+.+-|... =.||.|+..-.
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 45789999853 4444444699999999998655432 26999976543
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.59 E-value=1.9 Score=34.68 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCccccccccc------CCCCceEEeCCCCcccHHHHH
Q 020261 275 NDSCVICRLDY------EDGETLTVLSCKHSYHSECIN 306 (328)
Q Consensus 275 ~~~CaICLeef------~~ge~v~~LPCgH~FH~~CI~ 306 (328)
...|.||+..- ..++.+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 46799998752 222344455699999999995
No 87
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=81.03 E-value=0.17 Score=36.53 Aligned_cols=47 Identities=32% Similarity=0.766 Sum_probs=33.5
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
....|.||... +..+..-.|...||..|+.+-|... =.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35789999863 4445555699999999998755432 26999976554
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.77 E-value=0.15 Score=37.20 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=34.7
Q ss_pred CCCcccccccccCC--CCceEEeCCCCcccHHHHHHHHh-------cCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYED--GETLTVLSCKHSYHSECINNWLK-------INKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~--ge~v~~LPCgH~FH~~CI~~WL~-------~~ksCPvCR~eV~t 324 (328)
....|.||...... +..+..-.|...||..|+.+-|. ..=.||.|+....+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 45789999976433 33344445999999999987442 12379999876543
No 89
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.16 E-value=0.33 Score=35.11 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=34.3
Q ss_pred CCCcccccccccCCC-CceEEeCCCCcccHHHHHHHHh-----cCCCCCCccccc
Q 020261 274 SNDSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~-----~~ksCPvCR~eV 322 (328)
....|+||...+... ..|..-.|..=||..|+.--.. ..-.||.|+..-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence 456899999988543 3444456999999999965332 234799997643
No 90
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.10 E-value=0.79 Score=36.25 Aligned_cols=46 Identities=28% Similarity=0.648 Sum_probs=29.9
Q ss_pred CCCcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhc----CCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP--Cg-H~FH~~CI~~WL~~----~ksCPvCR~eV~ 323 (328)
....| ||..... +..|..=. |. .-||..||. |.. +-.||.|+....
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34667 9988653 44444334 55 579999997 433 237999987654
No 91
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.59 E-value=1.5 Score=42.82 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=31.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cC--CCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---IN--KVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~--ksCPvCR~eV~ 323 (328)
.+.|+|-+..|..+ ++...|.|.-|.+. ..||. +. -.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc--CcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 36899988887655 56677999855542 33442 22 37999998774
No 92
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.46 E-value=1 Score=33.71 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHH---------hcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL---------KINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL---------~~~ksCPvCR~eV~t~ 325 (328)
...| ||...+..+..|..-.|..=||..||.--. ...-.||.|+..-..+
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 3567 899887654555555699999999995321 1355899998765443
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.26 E-value=0.18 Score=39.78 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=32.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~e 321 (328)
....|.||...-.....|..-.|...||..|+.+=|... =.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 346799998764333334444599999999998544332 259999764
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.97 E-value=0.86 Score=35.88 Aligned_cols=46 Identities=22% Similarity=0.536 Sum_probs=32.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCC----CCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINK----VCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~k----sCPvCR~eV 322 (328)
....|.||... ++.+..-.|.-.||..|+.+=|.... .||.|+..-
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 45789999854 44444445899999999988664422 699998643
No 95
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.27 E-value=2 Score=41.85 Aligned_cols=46 Identities=17% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHH---hcC--CCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL---KIN--KVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL---~~~--ksCPvCR~eV~ 323 (328)
...|+|-+..|..+ ++...|.|.-|.+ +..|| .++ -.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccC
Confidence 36799988887665 5667799994444 23344 222 37999998875
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.96 E-value=0.57 Score=37.78 Aligned_cols=45 Identities=27% Similarity=0.599 Sum_probs=30.3
Q ss_pred Ccccccccc-cCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCccc
Q 020261 276 DSCVICRLD-YEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSA 320 (328)
Q Consensus 276 ~~CaICLee-f~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~ 320 (328)
..|.||... ...+..+.--.|...||..|+.+-|... =.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 468888864 2223333444599999999998765432 27999985
No 97
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=75.96 E-value=0.47 Score=38.15 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=34.0
Q ss_pred CCcccccccccCCCC-ceEEe-CCCCcccHHHHHHHH----h------cCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGE-TLTVL-SCKHSYHSECINNWL----K------INKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~L-PCgH~FH~~CI~~WL----~------~~ksCPvCR~eV~t 324 (328)
...|+||...+.... .+..- .|..=||..|+.--. . ..-.||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 357999999986543 33333 589999999985321 0 23479999876543
No 98
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.29 E-value=0.78 Score=37.11 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=23.3
Q ss_pred CcccccccccC----C---CCceEEeCCCCcccHHHHHHH
Q 020261 276 DSCVICRLDYE----D---GETLTVLSCKHSYHSECINNW 308 (328)
Q Consensus 276 ~~CaICLeef~----~---ge~v~~LPCgH~FH~~CI~~W 308 (328)
..|.||+..-. . ++.+.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 1 234445569999999999765
No 99
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=74.26 E-value=0.37 Score=36.87 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=28.2
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcC-----CCCCCccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN-----KVCPVCSA 320 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~-----ksCPvCR~ 320 (328)
.|.||...-..+..+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776553333223333499999999999766432 26999986
No 100
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=74.21 E-value=6.5 Score=30.80 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=28.6
Q ss_pred CCCcccccccccCCCCceEEeC--CCCcccHHHHHHHHhc
Q 020261 274 SNDSCVICRLDYEDGETLTVLS--CKHSYHSECINNWLKI 311 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LP--CgH~FH~~CI~~WL~~ 311 (328)
....|.+|.+.++..- .+.-| =.|+||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 4578999999987653 33334 4899999999999865
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.86 E-value=3.1 Score=31.31 Aligned_cols=47 Identities=23% Similarity=0.494 Sum_probs=32.3
Q ss_pred CCcccccccccC-CCCceEEeCCCCcccHHHHHHHHh-----cCCCCCCccccc
Q 020261 275 NDSCVICRLDYE-DGETLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~-~ge~v~~LPCgH~FH~~CI~~WL~-----~~ksCPvCR~eV 322 (328)
...| ||...+. .+..|..-.|..=||..||.--.. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4567 9998875 344555556999999999963221 234799998764
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.47 E-value=0.77 Score=35.77 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCccccccccc--CCCCceEEeCCCCcccHHHHHHHHhc--CCCCCCcccccc
Q 020261 274 SNDSCVICRLDY--EDGETLTVLSCKHSYHSECINNWLKI--NKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef--~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPvCR~eV~ 323 (328)
....|.||...- ..+..|..-.|.-.||..|+..-+.- .=.||.|+....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 457899998653 11222333349999999999864321 226999977554
No 103
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.38 E-value=0.63 Score=35.53 Aligned_cols=45 Identities=31% Similarity=0.562 Sum_probs=30.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-----CCCCCCccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-----NKVCPVCSA 320 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-----~ksCPvCR~ 320 (328)
..|.||...-..+..|.--.|...||..|+.+=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 478888865334444444459999999999865533 126999975
No 104
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.23 E-value=1.3 Score=33.19 Aligned_cols=45 Identities=29% Similarity=0.661 Sum_probs=29.2
Q ss_pred CCcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP--Cg-H~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
...| ||..... +..|..=. |. .-||..||. |... -.||.|+....
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 4678 8987643 44333334 55 689999997 4432 26999987543
No 105
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.38 E-value=4.2 Score=30.62 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=29.1
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+.|-..+.. .. +..-+..||..|. +|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCC
Confidence 44689999988775 22 3346789998885 58888887754
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.37 E-value=0.92 Score=34.07 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.7
Q ss_pred CCCccccccccc--CCCCceEEeCCCCcccHHHHHHHHhc--CCCCCCccccc
Q 020261 274 SNDSCVICRLDY--EDGETLTVLSCKHSYHSECINNWLKI--NKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef--~~ge~v~~LPCgH~FH~~CI~~WL~~--~ksCPvCR~eV 322 (328)
....|.||...- ..+..+..-.|.-.||..|+..-+.- .=.||.|+..-
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcC
Confidence 457899998753 22333333359999999999764311 12699997643
No 107
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=69.01 E-value=0.81 Score=41.89 Aligned_cols=46 Identities=22% Similarity=0.549 Sum_probs=26.9
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhc-----CCCCCCcccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-----NKVCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-----~ksCPvCR~e 321 (328)
..|.||...-..+..+..-.|...||..|+.+=|.. .=.||.|+..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 357888764333434444459999999999865543 1269999753
No 108
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.94 E-value=0.56 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
...|.+|...|..-. +-....||.+||..|....+...++|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 468999999986532 22334599999999987776667778777553
No 109
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.96 E-value=3.7 Score=29.84 Aligned_cols=40 Identities=23% Similarity=0.512 Sum_probs=29.7
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+..++.+. .-+..||..|. +|..|++.+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCC
Confidence 467999999888666554 35788998874 48888887764
No 110
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=67.89 E-value=1.1 Score=43.13 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHHh-------cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWLK-------INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL~-------~~ksCPvCR~eV~ 323 (328)
...|.+|...|..-. +-....||++||..|...++. ..++|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 467999999886432 222345999999999987652 1357888866554
No 111
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.44 E-value=0.5 Score=36.76 Aligned_cols=49 Identities=20% Similarity=0.514 Sum_probs=33.2
Q ss_pred CCcccccccccCC--CCceEEeCCCCcccHHHHHHHHh-----c---CCCCCCcccccc
Q 020261 275 NDSCVICRLDYED--GETLTVLSCKHSYHSECINNWLK-----I---NKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~--ge~v~~LPCgH~FH~~CI~~WL~-----~---~ksCPvCR~eV~ 323 (328)
...|.||...-.. +..|..=.|...||..|+.+-|. . .=.||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3579999876432 22333335999999999987654 1 237999987654
No 112
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.15 E-value=4.6 Score=34.32 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=31.7
Q ss_pred CCCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh--------c---CCCCCCccc
Q 020261 273 GSNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK--------I---NKVCPVCSA 320 (328)
Q Consensus 273 ~~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~--------~---~ksCPvCR~ 320 (328)
+....|.||... |+-+-.-.|-..||..||.+-|. . .=.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345789999853 44333335999999999997652 1 226999974
No 113
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.70 E-value=1.4 Score=33.21 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=33.4
Q ss_pred CCcccccccccCCCCceEEe--CCCCcccHHHHHHHHh---------cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVL--SCKHSYHSECINNWLK---------INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~L--PCgH~FH~~CI~~WL~---------~~ksCPvCR~eV~ 323 (328)
...| ||......+..|..- .|..=||..|+.---. .+-.||.|+..-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 4678 898876566555555 6999999999953211 2347999987654
No 114
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=66.19 E-value=0.93 Score=36.15 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=29.9
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCccccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEV 322 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~eV 322 (328)
.|.||...-.....+..-.|...||..|+.+=|... -.||.|+.-.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 577776653333234444599999999998655432 2699997654
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=65.90 E-value=0.98 Score=33.69 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=28.6
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhc-----CCCCCCcccc
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKI-----NKVCPVCSAE 321 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~-----~ksCPvCR~e 321 (328)
.|.||...-..+..+.--.|...||..|+.+=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 56677754333333333349999999999865543 2279999753
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=64.44 E-value=2.4 Score=29.49 Aligned_cols=43 Identities=16% Similarity=0.395 Sum_probs=29.2
Q ss_pred cccccccccCCCC-ceEEe-CCCCcccHHHHHHHH----hcCCCCCCcc
Q 020261 277 SCVICRLDYEDGE-TLTVL-SCKHSYHSECINNWL----KINKVCPVCS 319 (328)
Q Consensus 277 ~CaICLeef~~ge-~v~~L-PCgH~FH~~CI~~WL----~~~ksCPvCR 319 (328)
.|.||...+..+. .+..- .|..=||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789998886544 34434 588889999986422 2456899996
No 117
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.20 E-value=4.3 Score=30.22 Aligned_cols=41 Identities=27% Similarity=0.549 Sum_probs=29.0
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
....|+.|-..+...+.+. .-+..||..|. +|-.|++.+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCC
Confidence 3578999999887665554 35778998884 47777776643
No 118
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=62.01 E-value=11 Score=29.91 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=35.3
Q ss_pred CCCcccccccccC---CCCce-EEeCCCCcccHHHHHHHHh-cCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYE---DGETL-TVLSCKHSYHSECINNWLK-INKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~---~ge~v-~~LPCgH~FH~~CI~~WL~-~~ksCPvCR~eV~ 323 (328)
....|.||-..+- .++.. ..--|+-..|+.|+.-=.+ .+..||-|++...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999988863 33322 2234888899999876544 4679999999874
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=61.83 E-value=0.48 Score=38.39 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=32.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
..|.||...-..+..+.--.|...||..|+.+=|... =.||.|+..+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 3688887754444445445699999999998644332 25999976543
No 120
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=61.39 E-value=2.4 Score=30.88 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=26.9
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccH-HHHHHHHhcCCCCCCccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHS-ECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~-~CI~~WL~~~ksCPvCR~eV 322 (328)
.-..|.+|...+..+. . ...=+..||. .|..+ .-...|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~--~f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSA--MFGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHH--HSSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHH--HhCccCCCcCCce
Confidence 3467888887776542 2 2234566777 47644 3455687776543
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=60.71 E-value=1.5 Score=37.34 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=31.6
Q ss_pred CCCcccccccccCCC-CceEEeCCCCcccHHHHHHHHh-----cCCCCCCcccc
Q 020261 274 SNDSCVICRLDYEDG-ETLTVLSCKHSYHSECINNWLK-----INKVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~g-e~v~~LPCgH~FH~~CI~~WL~-----~~ksCPvCR~e 321 (328)
....| ||......+ ..+..-.|..-||..|+.--.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34679 999876533 3444446999999999953221 23479999863
No 122
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.58 E-value=5.1 Score=29.77 Aligned_cols=39 Identities=23% Similarity=0.681 Sum_probs=29.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+.|-..+..++.+.. -+..||..|+ +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 4679999998876665554 4778998874 5888887764
No 123
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.87 E-value=7.2 Score=28.56 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCCcccccccccCCCCc-eEEe-CCCCcccHHHHHHHHh----------cCCCCCCcc
Q 020261 274 SNDSCVICRLDYEDGET-LTVL-SCKHSYHSECINNWLK----------INKVCPVCS 319 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~L-PCgH~FH~~CI~~WL~----------~~ksCPvCR 319 (328)
....|+||...+..... +..- .|.--||..|+.---. ..-.||.|+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34689999999876543 3344 6999999999853221 023688885
No 124
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=59.29 E-value=1.1 Score=32.31 Aligned_cols=42 Identities=29% Similarity=0.683 Sum_probs=26.3
Q ss_pred CCcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhcC----CCCCCccc
Q 020261 275 NDSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKIN----KVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP--Cg-H~FH~~CI~~WL~~~----ksCPvCR~ 320 (328)
...| ||.... .+..|..=. |. .-||..||. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4567 898764 343333333 44 579999997 4432 26999965
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=58.72 E-value=3.2 Score=30.28 Aligned_cols=43 Identities=19% Similarity=0.438 Sum_probs=28.5
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVC 318 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvC 318 (328)
..|--|...|......+.-.|++.||..|=.---..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999888543222233499999999953322344689988
No 126
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=57.30 E-value=1.1 Score=44.33 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcC
Q 020261 69 DLALARTLQEQERAYMMLRMNN 90 (328)
Q Consensus 69 ~~~~~~~lq~qe~~~~~~~~~~ 90 (328)
|..|+.+|.+.-+++-++-+.+
T Consensus 341 DfeIG~~Ikd~IiP~AV~yftG 362 (417)
T 2ayu_A 341 DYSIGEQLKDKLIPRAVDWFTG 362 (417)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHS
T ss_pred HHHHHHHHHhhccccHHHHhcc
Confidence 4467788887777776666643
No 127
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.72 E-value=1.4 Score=31.85 Aligned_cols=42 Identities=26% Similarity=0.667 Sum_probs=27.4
Q ss_pred CCcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhcC----CCCCCccc
Q 020261 275 NDSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKIN----KVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP--Cg-H~FH~~CI~~WL~~~----ksCPvCR~ 320 (328)
...| ||.... .+..+..=. |. .-||..||. |... -.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4567 998764 354443334 65 689999997 4332 26999975
No 128
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.36 E-value=2.5 Score=34.34 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=17.4
Q ss_pred EeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 293 VLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 293 ~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...||+.|. .-+.....||.|+.+-..
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 345899881 122345689999987543
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.24 E-value=3 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.522 Sum_probs=26.3
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+.|-..+. ++.+ ..-+..||..|. +|-.|++.|.
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCC
Confidence 467999988874 3333 345788888775 5778877765
No 130
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.54 E-value=5.1 Score=33.53 Aligned_cols=33 Identities=15% Similarity=0.488 Sum_probs=24.4
Q ss_pred CCCcccccccccC--CCCceEEeCCCCcccHHHHH
Q 020261 274 SNDSCVICRLDYE--DGETLTVLSCKHSYHSECIN 306 (328)
Q Consensus 274 ~~~~CaICLeef~--~ge~v~~LPCgH~FH~~CI~ 306 (328)
....|+||...|. .+......-|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 3578999999983 23345556699999998854
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=52.23 E-value=2.1 Score=31.66 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~ksCPvCR~ 320 (328)
....| ||...+.....|..-.|..=||..|+.--.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34678 9988766433555556999999999964321 1237999975
No 132
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=51.69 E-value=6.9 Score=31.58 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=29.0
Q ss_pred CCCcccccccccCCCCceEEe--CCCCcccHHHHHHHHhcC----CCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVL--SCKHSYHSECINNWLKIN----KVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~L--PCgH~FH~~CI~~WL~~~----ksCPvCR~eV~ 323 (328)
....|.||.. .++.|..- .|-..||..||. |... =.||.|+-.+.
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4578999983 34333333 488999999997 5432 25887765443
No 133
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.56 E-value=9.6 Score=27.87 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=27.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+.|-..+.. . ++..-+..||..|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4689999988775 3 33446788998885 5777877653
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.57 E-value=6.6 Score=34.80 Aligned_cols=34 Identities=15% Similarity=0.478 Sum_probs=24.7
Q ss_pred CCcccccccccCCCCc-eEEeCCCCcccHHHHHHH
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCKHSYHSECINNW 308 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~W 308 (328)
...|.+|...|..-.. -..-.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999999865432 223359999999997654
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.56 E-value=9.9 Score=27.75 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=28.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+..++.++ ..-+..||..|. +|-.|++.+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCC
Confidence 357888988887655433 235778888775 57788777654
No 136
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.85 E-value=1.3 Score=32.78 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=33.4
Q ss_pred CCcccccccccCCCC-ceEEeCCCCcccHHHHHHHH----hcCCCCCCccccccCC
Q 020261 275 NDSCVICRLDYEDGE-TLTVLSCKHSYHSECINNWL----KINKVCPVCSAEVSTS 325 (328)
Q Consensus 275 ~~~CaICLeef~~ge-~v~~LPCgH~FH~~CI~~WL----~~~ksCPvCR~eV~t~ 325 (328)
...| ||......+. .|..-.|..=||..|+.--. ...-.||.|+..-.++
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ps 70 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPS 70 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCC
Confidence 3568 7988765554 45555699899999986432 1224799998765443
No 137
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.80 E-value=10 Score=26.87 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=23.8
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+.|-..+...+.++. .-+..||..|. +|-.|++.+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCC
Confidence 467777777765433222 24667777664 46677666543
No 138
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.67 E-value=8.3 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCcccccccccCCCCc-eEEeCCCCcccHHHHHHH
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCKHSYHSECINNW 308 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~W 308 (328)
...|.+|...|..-.. -..-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4689999999975432 223359999999997654
No 139
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.42 E-value=15 Score=27.89 Aligned_cols=50 Identities=14% Similarity=0.349 Sum_probs=32.8
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh--------cCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK--------INKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~--------~~ksCPvCR~eV~ 323 (328)
....|.+|...|..-.. -..-.||++||..|....+. ..++|-.|...+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 45689999999975432 22235999999999766431 1246766655443
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.29 E-value=9.7 Score=26.92 Aligned_cols=37 Identities=32% Similarity=0.800 Sum_probs=21.3
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+... . +..-+..||..|. +|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~~-~--~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSS-E--EESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCcccCCeeccc-e--EEECccccCCCCC--------ccCCCCCcCC
Confidence 4577777666532 2 3335667776664 4666666554
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.67 E-value=8.9 Score=27.20 Aligned_cols=39 Identities=18% Similarity=0.535 Sum_probs=22.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+...+.+ +..-+..||..|. +|-.|++.+.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTT
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCC
Confidence 4677777766543222 2234667776664 4666666554
No 142
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.60 E-value=9.9 Score=27.34 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=27.2
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+...+.++. .-+..||..|. +|-.|++.+..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCC
Confidence 4679999888765444432 24677888774 47777776643
No 143
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=48.36 E-value=11 Score=28.44 Aligned_cols=50 Identities=20% Similarity=0.510 Sum_probs=31.9
Q ss_pred CCCcccccccccCCCCce-EEeCCCCcccHHHHHHHHhc------CCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETL-TVLSCKHSYHSECINNWLKI------NKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v-~~LPCgH~FH~~CI~~WL~~------~ksCPvCR~eV~ 323 (328)
....|.+|...|..-..- ..-.||++||..|....+.. .++|-.|...+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 346899999999754322 22359999999998654311 235666655443
No 144
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=47.64 E-value=2.3 Score=30.93 Aligned_cols=42 Identities=26% Similarity=0.660 Sum_probs=26.9
Q ss_pred CCcccccccccCCCCceEEeC--CC-CcccHHHHHHHHhc----CCCCCCccc
Q 020261 275 NDSCVICRLDYEDGETLTVLS--CK-HSYHSECINNWLKI----NKVCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LP--Cg-H~FH~~CI~~WL~~----~ksCPvCR~ 320 (328)
...| ||.... .+..+..=. |. .-||..||. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4567 898863 354333334 54 789999997 332 236999975
No 145
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=47.32 E-value=13 Score=28.63 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=31.0
Q ss_pred CCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh------cCCCCCCcccc
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK------INKVCPVCSAE 321 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~------~~ksCPvCR~e 321 (328)
...|.+|...|..-.. -....||++||..|...++. ..++|-.|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~ 73 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYET 73 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHH
Confidence 4679999999875432 23345999999999876542 12356666443
No 146
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=47.17 E-value=7 Score=27.51 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=29.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+...+.++. .-+..||..|. +|-.|++.+..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCC
Confidence 4689999998887665433 35778998886 58888877653
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=46.53 E-value=7.7 Score=31.30 Aligned_cols=11 Identities=27% Similarity=1.093 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 020261 300 YHSECINNWLK 310 (328)
Q Consensus 300 FH~~CI~~WL~ 310 (328)
||+.|+.+|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999995
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=46.49 E-value=7.7 Score=31.34 Aligned_cols=11 Identities=27% Similarity=1.223 Sum_probs=10.1
Q ss_pred ccHHHHHHHHh
Q 020261 300 YHSECINNWLK 310 (328)
Q Consensus 300 FH~~CI~~WL~ 310 (328)
||+.|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999999985
No 149
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=45.20 E-value=5.5 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=20.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHH
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSEC 304 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~C 304 (328)
..|+.|-..+-..+++.. -|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~--~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC--LDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS--SSSCCCGGG
T ss_pred CcCCccCCEEecceeEEE--CCeEecccC
Confidence 579999888766665543 478899988
No 150
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.47 E-value=9.6 Score=26.69 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=26.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+.|-..+. ++ .+..-+..||..|. +|-.|++.+..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 57888888876 33 33446778888774 48888877653
No 151
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.45 E-value=17 Score=30.38 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=29.8
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHH------hc-----CCCCCCcccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWL------KI-----NKVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL------~~-----~ksCPvCR~e 321 (328)
....|.||... ++.+-.=.|-..||..||.+-| .. .=.|++|+-.
T Consensus 56 ~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 45679999853 3222222489999999999752 22 1379999653
No 152
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=44.28 E-value=6.6 Score=28.80 Aligned_cols=40 Identities=23% Similarity=0.580 Sum_probs=24.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+..++.+.. -+..||..|. +|-.|++.+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe--CCcccccccC--------ccCCCCCCCCC
Confidence 3568888877765554333 5677777664 36677766643
No 153
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.12 E-value=2.9 Score=30.26 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCcccccccccCCCCc---eEEeC--CCCcccHHHHHHHHhcC
Q 020261 275 NDSCVICRLDYEDGET---LTVLS--CKHSYHSECINNWLKIN 312 (328)
Q Consensus 275 ~~~CaICLeef~~ge~---v~~LP--CgH~FH~~CI~~WL~~~ 312 (328)
...||-|...++.... ++... |+|.||..|..+|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 3578888877765442 22223 88999999988886543
No 154
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.92 E-value=21 Score=28.29 Aligned_cols=48 Identities=10% Similarity=0.028 Sum_probs=31.8
Q ss_pred CcccccccccCC-CCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYED-GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~-ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|..|...+.. +.. ....=+..||..|...-+..+..|-.|...|..
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 567888777642 111 223356678888887766555589999988874
No 155
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=42.92 E-value=9.3 Score=35.33 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhc
Q 020261 66 VDADLALARTLQEQERAYMMLRMN 89 (328)
Q Consensus 66 ~~~~~~~~~~lq~qe~~~~~~~~~ 89 (328)
+..|..||.+|.+.-+++-+.-+.
T Consensus 194 ~~~d~eig~~Ikd~I~P~al~yf~ 217 (264)
T 2zd7_A 194 FPHGDSLASLFSEEIYPFCVKYYA 217 (264)
T ss_dssp STTHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccCchhHHHHHHhhhccCHHHHhc
Confidence 456899999999998887776653
No 156
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.49 E-value=10 Score=26.83 Aligned_cols=37 Identities=22% Similarity=0.595 Sum_probs=21.2
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+.. ..+. .-+..||..|. +|-.|++.|.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVIK--AMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CCEE--ETTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEecc-eEEE--ECcccccccCC--------EeCCCCCcCC
Confidence 467777766652 2222 24566776664 4666666554
No 157
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=41.76 E-value=21 Score=27.48 Aligned_cols=48 Identities=17% Similarity=0.434 Sum_probs=30.5
Q ss_pred CCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh-------cCCCCCCccccc
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK-------INKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~-------~~ksCPvCR~eV 322 (328)
...|.+|...|..-.. -..-.||++||..|....+. ..++|-.|...+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4589999999875432 22235999999999765321 124566665443
No 158
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.72 E-value=12 Score=26.57 Aligned_cols=40 Identities=20% Similarity=0.556 Sum_probs=24.9
Q ss_pred CCcccccccccCC--CCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYED--GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~--ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+.|-..+.. ...+ +..-+..||..|. +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 3568888877764 2222 2235777887774 5777777664
No 159
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.46 E-value=2.3 Score=32.52 Aligned_cols=17 Identities=18% Similarity=0.825 Sum_probs=14.0
Q ss_pred EEeC-CCCcccHHHHHHH
Q 020261 292 TVLS-CKHSYHSECINNW 308 (328)
Q Consensus 292 ~~LP-CgH~FH~~CI~~W 308 (328)
++-| |+|.||..|-.+|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 4555 9999999998888
No 160
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=19 Score=25.51 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=6.2
Q ss_pred CCcccHHHHHHHH
Q 020261 297 KHSYHSECINNWL 309 (328)
Q Consensus 297 gH~FH~~CI~~WL 309 (328)
+..||..|..+.+
T Consensus 53 ~~~yC~~cy~~~~ 65 (72)
T 1x61_A 53 RRAYCEGCYVATL 65 (72)
T ss_dssp SCEEEHHHHHHHH
T ss_pred CeEECHHHHHHHH
Confidence 4445555544443
No 161
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.91 E-value=11 Score=32.54 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=12.9
Q ss_pred eCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 294 LSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 294 LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
..|||++-. .....||+|..+
T Consensus 142 ~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCCeeCC-------CCCCCCCCCCCC
Confidence 347776652 233489999754
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.86 E-value=13 Score=26.78 Aligned_cols=39 Identities=28% Similarity=0.630 Sum_probs=25.1
Q ss_pred CcccccccccCC--CCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYED--GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~--ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+.. ... ++..-+..||..|. +|-.|+..+.
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCC
Confidence 568888887764 112 23335778888875 4777777664
No 163
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.33 E-value=11 Score=32.13 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=30.7
Q ss_pred CCccccccccc--CCCCceEEeCCCCcccHHHHHHHHhcCC--CCCCccc
Q 020261 275 NDSCVICRLDY--EDGETLTVLSCKHSYHSECINNWLKINK--VCPVCSA 320 (328)
Q Consensus 275 ~~~CaICLeef--~~ge~v~~LPCgH~FH~~CI~~WL~~~k--sCPvCR~ 320 (328)
...|+||...| -.+.......|+|.+|..|- .|+.... .|-+|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 57899999986 34445666679999999997 2433222 4666654
No 164
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=40.30 E-value=12 Score=33.41 Aligned_cols=49 Identities=16% Similarity=0.518 Sum_probs=33.0
Q ss_pred CCcccccccccCCCCc-eEEeCCCCcccHHHHHHHHh--------cCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGET-LTVLSCKHSYHSECINNWLK--------INKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~WL~--------~~ksCPvCR~eV~ 323 (328)
...|.+|...|..-.. -..-.||++||..|-..++. ..++|-.|...+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4689999999875432 22345999999999875432 1246777765554
No 165
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.70 E-value=16 Score=29.50 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=28.8
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+-|-..+.....+. .-+..||..|. +|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc--------CcCcCCCccc
Confidence 468999998877543233 36888999884 5888988875
No 166
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=39.16 E-value=6.3 Score=37.64 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=0.0
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 020261 96 YGSWEAGSYLHDEDDDFGGDGDDDDDDD 123 (328)
Q Consensus 96 ~~~~~~~~y~~~~~d~~~~~~d~~d~~d 123 (328)
-...+.+++..|.+.|+|..-+++|.+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (335)
T 4fp9_B 283 SSTSDDKRASLDEDEDDDDEEDNDEDDN 310 (335)
T ss_dssp ----------------------------
T ss_pred ccchhhhhhcccccccccccccccCccc
Confidence 3455677777766555554444444443
No 167
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=38.59 E-value=1.5 Score=32.25 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=28.0
Q ss_pred CcccccccccCCCCceEEe--CCCCcccHHHHHHHH---h-----cCCCCCCcccc
Q 020261 276 DSCVICRLDYEDGETLTVL--SCKHSYHSECINNWL---K-----INKVCPVCSAE 321 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~L--PCgH~FH~~CI~~WL---~-----~~ksCPvCR~e 321 (328)
..| ||......+..|..= .|..=||..|+.--- . .+-.||.||..
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 457 797766655444433 288889999984210 0 12469999853
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.31 E-value=15 Score=26.47 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=10.7
Q ss_pred cccccccccCCCCceEEeCCCCcccHHH
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSEC 304 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~C 304 (328)
.|+-|-..+.. . .+..-+..||..|
T Consensus 7 ~C~~C~~~I~~-~--~v~a~~~~wH~~C 31 (73)
T 1wig_A 7 GCDSCEKYITG-R--VLEAGEKHYHPSC 31 (73)
T ss_dssp SCSSSCCCCSS-C--CBCCSSCCBCTTT
T ss_pred CcccCCCEecC-e--eEEeCCCCCCCCc
Confidence 45555554432 1 1122345555544
No 169
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.23 E-value=3.3 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=27.0
Q ss_pred ccccccCCCCceEEeCCCCcccHHHHHHHHh---cCCCCCCccc
Q 020261 280 ICRLDYEDGETLTVLSCKHSYHSECINNWLK---INKVCPVCSA 320 (328)
Q Consensus 280 ICLeef~~ge~v~~LPCgH~FH~~CI~~WL~---~~ksCPvCR~ 320 (328)
||......+..|.--.|..=||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6877655434555556999999999864321 2237999975
No 170
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.63 E-value=8.8 Score=28.46 Aligned_cols=44 Identities=27% Similarity=0.570 Sum_probs=27.1
Q ss_pred CCcccccccccCCCCceEEeCCC---CcccHHHHHHHHhc----CCCCCCccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCK---HSYHSECINNWLKI----NKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCg---H~FH~~CI~~WL~~----~ksCPvCR~eV 322 (328)
...| ||.... .+..|..-.|. .-||..||. |.. .-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CSSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CCCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 3556 587753 44444444453 679999997 322 22699997654
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.19 E-value=16 Score=27.31 Aligned_cols=27 Identities=30% Similarity=0.651 Sum_probs=14.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHH
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSEC 304 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~C 304 (328)
..|+.|-..+...+.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC
Confidence 4566666665544332 23455566555
No 172
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.54 E-value=15 Score=25.86 Aligned_cols=37 Identities=27% Similarity=0.729 Sum_probs=19.0
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+.. +.+. .-+..||..|. +|..|++.+.
T Consensus 6 ~~C~~C~~~I~~-~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITS-GGIT--YQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCT-TCEE--ETTEEECTTTT--------BCTTTCCBCT
T ss_pred CCCcccCCEeCc-ceEE--ECccccccCcC--------EECCCCCCCC
Confidence 456666665542 2222 23556666553 3566655553
No 173
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.43 E-value=28 Score=26.26 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=24.6
Q ss_pred CCCcccccccccCCCCc-eEEeCCCCcccHHHHHHH
Q 020261 274 SNDSCVICRLDYEDGET-LTVLSCKHSYHSECINNW 308 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~W 308 (328)
....|.+|...|..-.. -..-.||++||..|....
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 34689999999864322 222359999999997543
No 174
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.32 E-value=23 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.522 Sum_probs=23.3
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+.|-..+. +..+ ..-+..||..|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCCC--------EeCCCCCccC
Confidence 356777877766 3222 235667777663 4777776664
No 175
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.18 E-value=11 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHh
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~ 310 (328)
....|.+|...+..+...... =+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHhc
Confidence 456788887777555443333 467788888777653
No 176
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=35.73 E-value=9.4 Score=23.86 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=7.9
Q ss_pred CCCCCcccccc
Q 020261 313 KVCPVCSAEVS 323 (328)
Q Consensus 313 ksCPvCR~eV~ 323 (328)
.+||+|+..++
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 36888887665
No 177
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=35.16 E-value=6 Score=39.79 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=31.3
Q ss_pred CCcccccccccC-CCCceEEeCCCCcccHHHHHHHHh-----cCCCCCCccccc
Q 020261 275 NDSCVICRLDYE-DGETLTVLSCKHSYHSECINNWLK-----INKVCPVCSAEV 322 (328)
Q Consensus 275 ~~~CaICLeef~-~ge~v~~LPCgH~FH~~CI~~WL~-----~~ksCPvCR~eV 322 (328)
...| ||...+. .+..+.+-.|.-=||..|+.---. ..-.||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3456 9988775 344555556999999999953221 123799998643
No 178
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.17 E-value=21 Score=26.30 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=23.5
Q ss_pred CcccccccccCCCCc-eEEeCCCCcccHHHHHHH
Q 020261 276 DSCVICRLDYEDGET-LTVLSCKHSYHSECINNW 308 (328)
Q Consensus 276 ~~CaICLeef~~ge~-v~~LPCgH~FH~~CI~~W 308 (328)
..|.+|...|..-.. -..-.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 579999999875422 222349999999997543
No 179
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.17 E-value=8 Score=28.88 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=12.6
Q ss_pred HHHHhcCCCCCCcccccc
Q 020261 306 NNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 306 ~~WL~~~ksCPvCR~eV~ 323 (328)
.+||...-.||+|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 456666678999988764
No 180
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.82 E-value=12 Score=24.32 Aligned_cols=8 Identities=38% Similarity=1.219 Sum_probs=3.9
Q ss_pred CCCccccc
Q 020261 315 CPVCSAEV 322 (328)
Q Consensus 315 CPvCR~eV 322 (328)
||+|++.+
T Consensus 8 CP~C~~~l 15 (34)
T 3mjh_B 8 CPQCMKSL 15 (34)
T ss_dssp CTTTCCEE
T ss_pred CcHHHHHc
Confidence 55554443
No 181
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.13 E-value=20 Score=25.95 Aligned_cols=37 Identities=27% Similarity=0.704 Sum_probs=21.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+... . +..-+..||..|. +|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~~-~--v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-C--EESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CcCCCCCCEecCc-E--EEECCchhhhhhC--------CcccCCCcCC
Confidence 4577777666542 2 2334666776664 4666666653
No 182
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.04 E-value=29 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=28.5
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
...|+-|-..+.....+.. -+..||..|. +|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYA--MDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEE--TTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCcccCCEeCCcEEEEE--CCceeHhhCC--------CcCCCCCccc
Confidence 4679999888776543433 4788999986 5888888774
No 183
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.71 E-value=17 Score=26.49 Aligned_cols=37 Identities=32% Similarity=0.809 Sum_probs=22.7
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+. +..+. .-+..||..|. +|-.|++.+.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE--ECCceeCccCC--------ccccCCCCCC
Confidence 47888888776 33333 34677887774 3555655553
No 184
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.06 E-value=12 Score=31.47 Aligned_cols=26 Identities=23% Similarity=0.658 Sum_probs=16.5
Q ss_pred EEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 292 TVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 292 ~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
+...|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 444588887532 22347999987753
No 185
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=31.95 E-value=7.2 Score=30.61 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCcccccccccCCCCceEEeCCC---CcccHHHHHHHHhc----CCCCCC-ccc
Q 020261 275 NDSCVICRLDYEDGETLTVLSCK---HSYHSECINNWLKI----NKVCPV-CSA 320 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCg---H~FH~~CI~~WL~~----~ksCPv-CR~ 320 (328)
...| ||.... .++.|..=.|. .-||..||. |.. .-.||. |+.
T Consensus 26 ~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 26 EVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CcEE-EeCCCC-CCCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 4568 998753 24433333444 579999996 332 236999 874
No 186
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=31.93 E-value=9.7 Score=37.65 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=7.6
Q ss_pred HHHHHHHHHH-HHHHHH
Q 020261 70 LALARTLQEQ-ERAYMM 85 (328)
Q Consensus 70 ~~~~~~lq~q-e~~~~~ 85 (328)
-.|+..|... +++.++
T Consensus 332 ee~e~~l~~DfeIG~~I 348 (417)
T 2ayu_A 332 EDLEERLALDYSIGEQL 348 (417)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455555544 444444
No 187
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=31.20 E-value=7.2 Score=29.02 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=12.8
Q ss_pred HHHHhcCCCCCCcccccc
Q 020261 306 NNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 306 ~~WL~~~ksCPvCR~eV~ 323 (328)
++||...-.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 356666678898888764
No 188
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=30.21 E-value=14 Score=32.23 Aligned_cols=9 Identities=33% Similarity=1.239 Sum_probs=7.1
Q ss_pred CCCCCcccc
Q 020261 313 KVCPVCSAE 321 (328)
Q Consensus 313 ksCPvCR~e 321 (328)
..||+|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 389999875
No 189
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.62 E-value=2.5 Score=31.12 Aligned_cols=47 Identities=26% Similarity=0.575 Sum_probs=26.1
Q ss_pred CCCcccccccc-cCCCCceEEeCCCCcccHHHHHHHHh-cCC---CCCCccc
Q 020261 274 SNDSCVICRLD-YEDGETLTVLSCKHSYHSECINNWLK-INK---VCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLee-f~~ge~v~~LPCgH~FH~~CI~~WL~-~~k---sCPvCR~ 320 (328)
....|.||+.. |..+-.-...-|.-.||..|-..|-. .++ +|-+||+
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 45789999865 55543223333666666666555532 222 3555554
No 190
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.52 E-value=37 Score=33.24 Aligned_cols=44 Identities=27% Similarity=0.567 Sum_probs=30.3
Q ss_pred CCCcccccccccCCCCceEEe--CCCCcccHHHHHHHHhc----------CCCCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTVL--SCKHSYHSECINNWLKI----------NKVCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~L--PCgH~FH~~CI~~WL~~----------~ksCPvCR~ 320 (328)
....|.||-.. ++.+..= .|...||..||..++.. .=.|=+|.-
T Consensus 92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34678888753 3333333 59999999999999822 226888864
No 191
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=29.17 E-value=38 Score=26.73 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCcccccccccCC-CCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 275 NDSCVICRLDYED-GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 275 ~~~CaICLeef~~-ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
-..|..|...+.. +... ...=+..||..|...-+..+..|+.|...|.
T Consensus 29 CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeE-EEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 3556666655542 1111 2223455666665553333235666666654
No 192
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.16 E-value=29 Score=27.11 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=18.0
Q ss_pred CCCcccccccccCC-CCceEEeCCCCcccHHHHHHHHh
Q 020261 274 SNDSCVICRLDYED-GETLTVLSCKHSYHSECINNWLK 310 (328)
Q Consensus 274 ~~~~CaICLeef~~-ge~v~~LPCgH~FH~~CI~~WL~ 310 (328)
.-..|..|...+.. +... ...=+..||..|..+-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCee-EEECCeeechHHHHHHhC
Confidence 34566677666542 2111 122355667777655443
No 193
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.98 E-value=18 Score=26.39 Aligned_cols=37 Identities=27% Similarity=0.699 Sum_probs=21.1
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+.. ..+ ..-+..||..|. +|..|++.+.
T Consensus 16 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILD-RIL--RAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTTC--------BCSSSCCBCT
T ss_pred CccccCCCeecc-eeE--EECCccccHHhc--------CcccCCCccC
Confidence 567777766652 222 224566776663 4666666654
No 194
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.53 E-value=18 Score=26.20 Aligned_cols=38 Identities=29% Similarity=0.548 Sum_probs=22.7
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
..|+.|-..+.. ..+ ..-+..||..|. +|-.|++.+..
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYL--SAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCE--EETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CccccCCCeecc-eeE--EECCCeEecCcC--------ChhhCCCCCCC
Confidence 467777777654 333 224567777664 46777766643
No 195
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.53 E-value=35 Score=25.48 Aligned_cols=30 Identities=30% Similarity=0.601 Sum_probs=24.2
Q ss_pred CCcccccccccCCCCceEEeCC-CCcccHHHHHHH
Q 020261 275 NDSCVICRLDYEDGETLTVLSC-KHSYHSECINNW 308 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPC-gH~FH~~CI~~W 308 (328)
..-|.||.++ -.++.+.| +-.||..|...-
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 4569999987 45788889 899999997664
No 196
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.77 E-value=3.6 Score=39.07 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=26.6
Q ss_pred CCCcccccccccCCC--------CceEEeCCCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 274 SNDSCVICRLDYEDG--------ETLTVLSCKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 274 ~~~~CaICLeef~~g--------e~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
....||||-..-... +..+ |.+|.-|-..|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R-----~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLR-----YLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEE-----EEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcE-----EEEeCCCCCEEeecCcCCcCCCCC
Confidence 457899996553221 2222 334555666676677899999764
No 197
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.72 E-value=21 Score=28.57 Aligned_cols=27 Identities=22% Similarity=0.647 Sum_probs=18.1
Q ss_pred ceEEeCCCCcccHHHHHHHHhcCC-CCCCccccc
Q 020261 290 TLTVLSCKHSYHSECINNWLKINK-VCPVCSAEV 322 (328)
Q Consensus 290 ~v~~LPCgH~FH~~CI~~WL~~~k-sCPvCR~eV 322 (328)
..+...|||.|-.. .... .||.|....
T Consensus 73 ~~~C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC------CCCCCcCccccCCC
Confidence 34555688888762 2356 799997763
No 198
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.71 E-value=25 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=28.2
Q ss_pred CCcccccccccCC---CCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYED---GETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~---ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
...|+.|-..+.. ... ++..=+..||..|. +|-.|++.+..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCC
Confidence 3579999988874 222 22335788998884 58889888764
No 199
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=26 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.493 Sum_probs=24.4
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
..|+.|-..+.....+ +..-+..||..|. +|-.|++.+.
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRE-LFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCB-CCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcEE-EEeCCccccccCC--------eecCCCCccC
Confidence 4788888877632222 1224677888774 4777777665
No 200
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.44 E-value=37 Score=32.37 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=28.0
Q ss_pred cccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 277 SCVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
.|++=+..+..|...+.-| ||-.||... ..+.||+|.-.
T Consensus 264 iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 264 ICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp BBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred eecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 4555555555577777778 999999864 46789999653
No 201
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.42 E-value=34 Score=28.60 Aligned_cols=41 Identities=24% Similarity=0.639 Sum_probs=0.0
Q ss_pred cccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 020261 277 SCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 326 (328)
Q Consensus 277 ~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~~ 326 (328)
.|..|...+...+.++.. -++.||..|. +|-.|++.+....
T Consensus 67 ~C~~C~~~I~~~~~v~~a-~~~~~H~~CF--------~C~~C~~~L~~g~ 107 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA-QDFVYHLHCF--------ACVVCKRQLATGD 107 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE-TTEEEEGGGC--------BCTTTCCBCCTTC
T ss_pred cccccccccCCCcEEEEc-CCceEeeCCC--------cCCCCCCCCCCCC
No 202
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.39 E-value=22 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=19.7
Q ss_pred CcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccc
Q 020261 276 DSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEV 322 (328)
Q Consensus 276 ~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV 322 (328)
..|..|...+..+. ....=+..||..|..+. -...|..|...+
T Consensus 143 F~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~--f~~kc~~C~~~~ 185 (192)
T 1b8t_A 143 FRCAKCGKSLESTT--LADKDGEIYCKGCYAKN--FGPKGFGFGQGA 185 (192)
T ss_dssp CBCTTTCCBCCSSS--EEEETTEEEEHHHHHHH--TCCCCCCCCCCC
T ss_pred CCccccCCCCCCCc--ccccCCEEeCHHHHHHh--cCCcCCCCCCcc
Confidence 34555544443321 11223455666665443 234566665543
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.83 E-value=38 Score=28.82 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=0.0
Q ss_pred ccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccCCC
Q 020261 278 CVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVSTSG 326 (328)
Q Consensus 278 CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t~~ 326 (328)
|..|-..+...+.++.. -++.||..| -+|-.|++.+....
T Consensus 72 C~~C~~~I~~~e~~i~a-~~~~~H~~C--------F~C~~C~~~L~~g~ 111 (188)
T 1rut_X 72 CSACGQSIPASELVMRA-QGNVYHLKC--------FTCSTCRNRLVPGD 111 (188)
T ss_dssp CTTTCCEECTTSEEEEE-TTEEECGGG--------CBCTTTCCBCCTTC
T ss_pred cccCCCccccCcEEEEc-CCCEEeCCC--------CeECCCCCCCCCCC
No 204
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=25.65 E-value=48 Score=28.62 Aligned_cols=43 Identities=19% Similarity=0.485 Sum_probs=29.8
Q ss_pred CCCcccccccccCCCCceEEe---CCCCcccHHHHHHHHhcC----------CCCCCccc
Q 020261 274 SNDSCVICRLDYEDGETLTVL---SCKHSYHSECINNWLKIN----------KVCPVCSA 320 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~L---PCgH~FH~~CI~~WL~~~----------ksCPvCR~ 320 (328)
....|.||-.. ..|+.- .|...||..||..++... =.|=+|.-
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45789999853 333433 388999999999988431 25888853
No 205
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.61 E-value=21 Score=31.47 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=10.6
Q ss_pred hhhcHHHHhhCCCCC
Q 020261 39 TETNLEQQQQGQRQD 53 (328)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (328)
|..||..+-.|-...
T Consensus 29 T~~nL~~a~~gE~~a 43 (202)
T 1yuz_A 29 TLENLKAAIAGETGA 43 (202)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877665444
No 206
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=23.90 E-value=37 Score=24.20 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=12.8
Q ss_pred CCCCCccccccchhHHHHHHHHH
Q 020261 56 TRTPFTNLSQVDADLALARTLQE 78 (328)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~lq~ 78 (328)
+|+|||. +.|.+|...+.+
T Consensus 1 gR~~FT~----edD~~L~~~v~~ 19 (59)
T 1fex_A 1 GRIAFTD----ADDVAILTYVKE 19 (59)
T ss_dssp CCCCCCH----HHHHHHHHHHHH
T ss_pred CCCCCCH----HHHHHHHHHHHH
Confidence 5899984 566666665553
No 207
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=23.52 E-value=7.7 Score=28.88 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=10.2
Q ss_pred HHhcCCCCCCcccccc
Q 020261 308 WLKINKVCPVCSAEVS 323 (328)
Q Consensus 308 WL~~~ksCPvCR~eV~ 323 (328)
||..--.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 4444557888887653
No 208
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.23 E-value=8 Score=27.66 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=11.3
Q ss_pred HHHhcCCCCCCccccc
Q 020261 307 NWLKINKVCPVCSAEV 322 (328)
Q Consensus 307 ~WL~~~ksCPvCR~eV 322 (328)
+||..--.||+|+..+
T Consensus 5 ~~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 5 AGLLEILACPACHAPL 20 (56)
T ss_dssp CSCTTSCCCSSSCSCE
T ss_pred HHHHhheeCCCCCCcc
Confidence 3555556899998875
No 209
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.10 E-value=39 Score=31.92 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCcccccccccC--CCCceEEeCCCCcccHHHHHH
Q 020261 275 NDSCVICRLDYE--DGETLTVLSCKHSYHSECINN 307 (328)
Q Consensus 275 ~~~CaICLeef~--~ge~v~~LPCgH~FH~~CI~~ 307 (328)
...|.+|...|. .......-.||..+|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 468999998874 234556667999999999764
No 210
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.65 E-value=41 Score=32.21 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=26.2
Q ss_pred ccccccccCCCCceEEeC-CCCcccHHHHHHHHhcCCCCCCcccc
Q 020261 278 CVICRLDYEDGETLTVLS-CKHSYHSECINNWLKINKVCPVCSAE 321 (328)
Q Consensus 278 CaICLeef~~ge~v~~LP-CgH~FH~~CI~~WL~~~ksCPvCR~e 321 (328)
|+.=+..+..|...+.-| ||-.||... ..+.||+|.-.
T Consensus 274 Ca~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 312 (325)
T 3mv2_A 274 CAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMIS 312 (325)
T ss_dssp CTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSCB
T ss_pred ecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 444444434467777777 999999864 46789999754
No 211
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=22.23 E-value=60 Score=24.30 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCccccccC
Q 020261 275 NDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVST 324 (328)
Q Consensus 275 ~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~t 324 (328)
-..|..|...+... .. ...=+..||..|..+ .....|..|.+.|.+
T Consensus 33 CF~C~~C~~~L~~~-~~-~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TF-VAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-CC-EEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-ee-ECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 46788887777432 22 222466778777633 235689999988874
No 212
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.07 E-value=23 Score=21.88 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=7.2
Q ss_pred CCCCcccccc
Q 020261 314 VCPVCSAEVS 323 (328)
Q Consensus 314 sCPvCR~eV~ 323 (328)
.||+|.+-++
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 5888877665
No 213
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=21.67 E-value=34 Score=28.91 Aligned_cols=45 Identities=11% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCCcccccccccCCCCceEEeCCCCcccHHHHHHHHhcCCCCCCcccccc
Q 020261 274 SNDSCVICRLDYEDGETLTVLSCKHSYHSECINNWLKINKVCPVCSAEVS 323 (328)
Q Consensus 274 ~~~~CaICLeef~~ge~v~~LPCgH~FH~~CI~~WL~~~ksCPvCR~eV~ 323 (328)
....|..|...+.... .. .=+..||..|..+ .....|..|+..|.
T Consensus 86 ~CF~C~~C~~~L~~~~--f~-~~g~~yC~~~y~~--~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC--FS-RGESVYCKDDFFK--RFGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCC--EE-ETTEEECHHHHHH--TTSCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCc--ee-ECCEeeecCcccc--ccccccccCCCccC
Confidence 3456777766665432 11 2355666666533 23456666666654
No 214
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.14 E-value=25 Score=27.53 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=4.7
Q ss_pred CCCCccccc
Q 020261 314 VCPVCSAEV 322 (328)
Q Consensus 314 sCPvCR~eV 322 (328)
.||+|.+++
T Consensus 49 ~CPvCgs~l 57 (112)
T 1l8d_A 49 KCPVCGREL 57 (112)
T ss_dssp ECTTTCCEE
T ss_pred CCCCCCCcC
Confidence 355555544
No 215
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.02 E-value=7.7 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=9.1
Q ss_pred HHhcCCCCCCcccccc
Q 020261 308 WLKINKVCPVCSAEVS 323 (328)
Q Consensus 308 WL~~~ksCPvCR~eV~ 323 (328)
||..--.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLV 19 (68)
T ss_dssp CCEEECBCTTTCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 3333446777777653
No 216
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=20.30 E-value=8.5 Score=28.83 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=9.7
Q ss_pred HHhcCCCCCCcccccc
Q 020261 308 WLKINKVCPVCSAEVS 323 (328)
Q Consensus 308 WL~~~ksCPvCR~eV~ 323 (328)
||..--.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3444456788877653
Done!