Query 020262
Match_columns 328
No_of_seqs 170 out of 470
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:19:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2688 Transcription-associat 100.0 3E-52 6.5E-57 400.0 24.5 305 14-326 1-316 (394)
2 COG5600 Transcription-associat 100.0 4.3E-43 9.4E-48 330.6 24.8 309 14-326 1-334 (413)
3 KOG2581 26S proteasome regulat 99.9 1.7E-24 3.6E-29 206.4 15.4 172 147-326 184-363 (493)
4 KOG1464 COP9 signalosome, subu 97.3 0.085 1.8E-06 49.7 20.3 168 151-324 164-352 (440)
5 PF07719 TPR_2: Tetratricopept 96.4 0.0061 1.3E-07 37.8 3.9 33 217-249 2-34 (34)
6 KOG2908 26S proteasome regulat 95.9 1.8 3.8E-05 42.0 20.3 136 169-306 111-258 (380)
7 PF13371 TPR_9: Tetratricopept 95.4 0.054 1.2E-06 39.5 6.0 63 179-250 1-63 (73)
8 PF10255 Paf67: RNA polymerase 95.4 0.11 2.4E-06 51.6 9.8 188 112-312 70-272 (404)
9 KOG1463 26S proteasome regulat 95.1 1 2.2E-05 43.7 15.1 209 98-312 87-315 (411)
10 PF01399 PCI: PCI domain; Int 94.8 0.04 8.6E-07 43.1 4.1 43 284-326 2-46 (105)
11 PF13432 TPR_16: Tetratricopep 94.8 0.12 2.6E-06 36.9 6.3 61 180-249 4-64 (65)
12 PF00515 TPR_1: Tetratricopept 94.1 0.078 1.7E-06 32.9 3.4 32 217-248 2-33 (34)
13 PF14938 SNAP: Soluble NSF att 94.0 3.6 7.8E-05 38.5 16.2 133 147-309 130-262 (282)
14 COG5159 RPN6 26S proteasome re 93.6 3.4 7.4E-05 39.5 14.7 211 98-313 84-319 (421)
15 cd00189 TPR Tetratricopeptide 91.7 1.3 2.8E-05 31.3 7.7 86 147-248 15-100 (100)
16 TIGR02552 LcrH_SycD type III s 91.6 1.3 2.8E-05 35.9 8.4 65 178-251 56-120 (135)
17 PF13181 TPR_8: Tetratricopept 91.1 0.37 8E-06 29.6 3.6 31 217-247 2-32 (34)
18 PRK15359 type III secretion sy 90.4 1.5 3.3E-05 36.8 7.9 76 177-261 62-139 (144)
19 PF12895 Apc3: Anaphase-promot 90.2 1.5 3.2E-05 33.0 6.9 81 147-242 4-84 (84)
20 PF13424 TPR_12: Tetratricopep 90.1 0.56 1.2E-05 34.5 4.4 71 172-246 4-76 (78)
21 cd00189 TPR Tetratricopeptide 90.0 2.7 5.8E-05 29.6 8.0 64 178-250 5-68 (100)
22 KOG2582 COP9 signalosome, subu 89.0 1.6 3.4E-05 42.8 7.5 100 209-313 176-289 (422)
23 PF13414 TPR_11: TPR repeat; P 88.9 0.81 1.8E-05 32.7 4.4 36 216-251 3-38 (69)
24 PF13174 TPR_6: Tetratricopept 87.6 0.8 1.7E-05 27.6 3.2 31 219-249 3-33 (33)
25 PF04733 Coatomer_E: Coatomer 86.2 2.7 5.8E-05 39.9 7.4 125 173-306 131-288 (290)
26 PF13428 TPR_14: Tetratricopep 85.8 1.3 2.8E-05 29.3 3.7 33 219-251 4-36 (44)
27 KOG4626 O-linked N-acetylgluco 85.4 11 0.00025 39.6 11.6 86 147-249 335-421 (966)
28 PF13414 TPR_11: TPR repeat; P 84.6 3.8 8.2E-05 29.1 6.0 62 177-247 7-69 (69)
29 PF09976 TPR_21: Tetratricopep 83.3 25 0.00053 29.2 12.8 83 147-243 63-145 (145)
30 smart00028 TPR Tetratricopepti 82.6 2 4.4E-05 24.0 3.3 32 217-248 2-33 (34)
31 KOG2300 Uncharacterized conser 81.5 20 0.00043 36.7 11.3 138 167-308 398-554 (629)
32 TIGR03302 OM_YfiO outer membra 79.4 45 0.00097 29.6 14.6 98 147-249 85-199 (235)
33 TIGR02795 tol_pal_ybgF tol-pal 79.1 9.6 0.00021 29.4 7.0 67 178-250 44-110 (119)
34 PRK02603 photosystem I assembl 78.5 41 0.00089 28.6 12.0 77 168-250 30-106 (172)
35 PRK11788 tetratricopeptide rep 77.8 66 0.0014 30.6 14.8 69 176-248 144-212 (389)
36 PF13176 TPR_7: Tetratricopept 76.3 3 6.5E-05 26.3 2.7 27 220-246 3-29 (36)
37 PF10602 RPN7: 26S proteasome 75.3 56 0.0012 28.6 11.9 91 148-245 52-142 (177)
38 TIGR02795 tol_pal_ybgF tol-pal 73.4 17 0.00038 27.9 7.1 67 178-250 7-73 (119)
39 TIGR02521 type_IV_pilW type IV 71.7 33 0.00072 29.0 9.1 68 176-250 102-169 (234)
40 PRK10370 formate-dependent nit 71.5 23 0.0005 31.4 8.1 81 170-250 13-107 (198)
41 KOG2002 TPR-containing nuclear 71.4 1.6E+02 0.0034 32.8 15.3 92 145-249 249-340 (1018)
42 PF13424 TPR_12: Tetratricopep 71.2 7.1 0.00015 28.5 4.0 33 214-246 3-35 (78)
43 PF13812 PPR_3: Pentatricopept 70.6 7.8 0.00017 23.2 3.5 30 175-204 3-32 (34)
44 TIGR01716 RGG_Cterm transcript 69.3 48 0.001 29.3 9.8 75 168-246 124-198 (220)
45 PRK11189 lipoprotein NlpI; Pro 68.7 9.4 0.0002 36.0 5.3 45 215-259 235-279 (296)
46 PRK11788 tetratricopeptide rep 68.2 26 0.00057 33.4 8.4 65 178-247 74-138 (389)
47 PF13374 TPR_10: Tetratricopep 67.1 6.9 0.00015 24.5 2.8 29 219-247 5-33 (42)
48 PF14853 Fis1_TPR_C: Fis1 C-te 65.8 11 0.00023 26.5 3.8 33 218-250 3-35 (53)
49 PF13429 TPR_15: Tetratricopep 65.4 21 0.00045 32.9 6.8 88 148-250 93-180 (280)
50 TIGR02552 LcrH_SycD type III s 64.9 59 0.0013 25.8 8.7 66 176-250 20-85 (135)
51 TIGR02521 type_IV_pilW type IV 64.8 54 0.0012 27.7 9.0 63 178-249 36-98 (234)
52 PLN03088 SGT1, suppressor of 64.3 55 0.0012 31.8 9.8 88 147-250 17-104 (356)
53 PF14559 TPR_19: Tetratricopep 64.3 6.6 0.00014 27.7 2.5 57 184-249 2-58 (68)
54 TIGR02917 PEP_TPR_lipo putativ 60.5 2.2E+02 0.0047 29.7 14.9 67 175-250 127-193 (899)
55 PRK11189 lipoprotein NlpI; Pro 59.1 1.5E+02 0.0034 27.7 11.6 65 177-250 102-166 (296)
56 PRK10803 tol-pal system protei 58.9 29 0.00064 32.4 6.5 61 184-250 154-214 (263)
57 TIGR03302 OM_YfiO outer membra 58.6 39 0.00084 30.0 7.1 67 178-250 38-104 (235)
58 PF07729 FCD: FCD domain; Int 56.6 69 0.0015 24.6 7.5 73 232-307 48-122 (125)
59 PRK15363 pathogenicity island 54.6 31 0.00067 29.9 5.4 46 217-262 104-151 (157)
60 PF13041 PPR_2: PPR repeat fam 53.7 21 0.00046 23.8 3.5 30 175-204 5-34 (50)
61 TIGR02917 PEP_TPR_lipo putativ 53.2 1.3E+02 0.0028 31.4 11.0 64 178-250 164-227 (899)
62 PRK10049 pgaA outer membrane p 52.2 76 0.0016 34.2 9.2 127 176-308 313-454 (765)
63 PRK09782 bacteriophage N4 rece 51.6 29 0.00064 38.7 6.0 92 212-313 40-137 (987)
64 TIGR00756 PPR pentatricopeptid 51.5 30 0.00064 20.3 3.7 29 176-204 3-31 (35)
65 PRK02603 photosystem I assembl 51.3 46 0.00099 28.3 6.1 62 210-273 29-90 (172)
66 PF09976 TPR_21: Tetratricopep 51.2 59 0.0013 26.8 6.6 104 185-298 23-128 (145)
67 PF13432 TPR_16: Tetratricopep 50.8 22 0.00047 24.8 3.3 31 220-250 1-31 (65)
68 TIGR00990 3a0801s09 mitochondr 50.6 59 0.0013 33.8 7.9 63 178-249 438-500 (615)
69 KOG1840 Kinesin light chain [C 50.1 3.1E+02 0.0067 28.4 14.7 141 86-247 253-398 (508)
70 PF08631 SPO22: Meiosis protei 49.9 57 0.0012 30.4 6.9 86 184-270 4-99 (278)
71 PF07721 TPR_4: Tetratricopept 49.9 16 0.00035 21.2 2.1 23 218-240 3-25 (26)
72 PF10300 DUF3808: Protein of u 49.2 1.3E+02 0.0027 30.6 9.7 78 186-274 246-324 (468)
73 KOG4234 TPR repeat-containing 48.4 34 0.00073 31.3 4.8 89 223-312 102-196 (271)
74 PRK15359 type III secretion sy 48.0 1E+02 0.0022 25.6 7.5 64 179-251 30-93 (144)
75 PF09295 ChAPs: ChAPs (Chs5p-A 47.7 1E+02 0.0022 30.7 8.6 95 150-265 218-312 (395)
76 PF01535 PPR: PPR repeat; Int 46.5 30 0.00065 19.9 3.0 27 176-202 3-29 (31)
77 PF10516 SHNi-TPR: SHNi-TPR; 46.4 28 0.0006 22.7 3.0 25 221-245 6-30 (38)
78 TIGR00990 3a0801s09 mitochondr 46.3 1.2E+02 0.0026 31.5 9.3 69 171-248 506-574 (615)
79 CHL00033 ycf3 photosystem I as 44.4 1.1E+02 0.0024 25.8 7.3 88 156-245 55-142 (168)
80 COG1729 Uncharacterized protei 44.1 69 0.0015 30.2 6.3 67 177-250 146-212 (262)
81 PLN03077 Protein ECB2; Provisi 44.0 2.4E+02 0.0053 30.6 11.6 66 173-250 424-489 (857)
82 KOG1156 N-terminal acetyltrans 43.6 41 0.00088 35.5 5.1 39 211-249 366-404 (700)
83 PRK14574 hmsH outer membrane p 40.3 2E+02 0.0044 31.6 10.1 74 176-250 370-450 (822)
84 PF14559 TPR_19: Tetratricopep 39.0 55 0.0012 22.7 4.0 24 227-250 2-25 (68)
85 PF02064 MAS20: MAS20 protein 38.7 74 0.0016 26.3 5.1 30 221-250 68-97 (121)
86 PRK11447 cellulose synthase su 38.1 3.2E+02 0.0068 31.0 11.6 69 173-250 351-419 (1157)
87 cd05804 StaR_like StaR_like; a 36.6 2.3E+02 0.005 26.5 9.0 66 175-245 150-215 (355)
88 PF08544 GHMP_kinases_C: GHMP 36.6 60 0.0013 23.8 4.0 22 288-309 1-22 (85)
89 TIGR00540 hemY_coli hemY prote 36.4 57 0.0012 32.1 4.9 40 210-249 329-370 (409)
90 PRK10866 outer membrane biogen 36.4 3.4E+02 0.0073 24.8 14.3 169 77-269 35-226 (243)
91 PRK15331 chaperone protein Sic 36.3 58 0.0013 28.5 4.3 38 219-256 108-145 (165)
92 cd05804 StaR_like StaR_like; a 36.0 2.6E+02 0.0056 26.2 9.2 71 169-248 110-180 (355)
93 KOG3060 Uncharacterized conser 35.4 3.2E+02 0.0069 25.9 9.1 77 172-257 51-127 (289)
94 PRK10866 outer membrane biogen 35.2 1E+02 0.0022 28.3 6.0 65 180-250 39-103 (243)
95 PRK10803 tol-pal system protei 34.7 1.7E+02 0.0037 27.3 7.5 67 178-250 185-251 (263)
96 PLN03088 SGT1, suppressor of 34.4 1.8E+02 0.0039 28.2 7.9 64 180-252 9-72 (356)
97 KOG4056 Translocase of outer m 34.1 54 0.0012 27.8 3.6 40 211-250 71-115 (143)
98 PRK12370 invasion protein regu 33.7 2E+02 0.0043 29.6 8.5 62 180-250 345-406 (553)
99 KOG0889 Histone acetyltransfer 33.6 1.2E+03 0.026 30.3 15.5 92 147-246 2751-2842(3550)
100 PRK15174 Vi polysaccharide exp 33.0 2.2E+02 0.0048 30.1 8.9 66 178-252 323-388 (656)
101 PF08898 DUF1843: Domain of un 32.0 1.4E+02 0.0031 21.1 4.8 38 286-323 5-44 (53)
102 PRK10370 formate-dependent nit 31.4 82 0.0018 27.8 4.6 60 183-251 118-179 (198)
103 PRK11906 transcriptional regul 31.3 77 0.0017 32.2 4.8 32 217-248 373-404 (458)
104 smart00668 CTLH C-terminal to 31.3 90 0.002 21.2 3.9 28 286-313 6-33 (58)
105 KOG1173 Anaphase-promoting com 31.2 38 0.00083 35.2 2.7 88 170-271 366-464 (611)
106 COG3071 HemY Uncharacterized e 30.8 53 0.0012 32.6 3.5 34 217-250 329-362 (400)
107 KOG3081 Vesicle coat complex C 30.0 1.2E+02 0.0026 28.9 5.5 44 224-272 215-258 (299)
108 PLN03098 LPA1 LOW PSII ACCUMUL 29.4 1.8E+02 0.0039 29.6 7.0 63 175-245 77-141 (453)
109 smart00386 HAT HAT (Half-A-TPR 29.4 1.2E+02 0.0025 17.3 4.4 19 230-248 1-19 (33)
110 PF13281 DUF4071: Domain of un 28.8 3.4E+02 0.0074 26.9 8.8 68 177-248 146-214 (374)
111 PLN03218 maturation of RBCL 1; 28.2 9.3E+02 0.02 27.4 14.0 65 175-247 721-785 (1060)
112 PF13431 TPR_17: Tetratricopep 28.0 36 0.00077 21.2 1.2 21 216-236 13-33 (34)
113 PLN03218 maturation of RBCL 1; 27.8 9.4E+02 0.02 27.3 13.2 63 175-245 616-678 (1060)
114 PRK14574 hmsH outer membrane p 27.6 8.5E+02 0.019 26.8 12.6 101 178-295 141-253 (822)
115 PHA02608 67 prohead core prote 25.8 78 0.0017 24.1 2.9 18 286-303 2-19 (80)
116 PF12854 PPR_1: PPR repeat 25.8 1E+02 0.0022 19.0 3.1 26 174-199 8-33 (34)
117 KOG2076 RNA polymerase III tra 25.7 2.2E+02 0.0048 31.3 7.2 71 168-249 412-482 (895)
118 PRK10153 DNA-binding transcrip 25.3 67 0.0015 33.1 3.3 55 186-250 433-487 (517)
119 TIGR00985 3a0801s04tom mitocho 25.3 80 0.0017 27.1 3.2 28 222-249 96-124 (148)
120 KOG4642 Chaperone-dependent E3 25.1 5.2E+02 0.011 24.4 8.6 84 145-245 23-107 (284)
121 PF13982 YbfN: YbfN-like lipop 25.0 1.8E+02 0.0039 22.5 4.7 70 237-306 9-80 (89)
122 COG3197 FixS Uncharacterized p 25.0 18 0.00038 26.0 -0.7 14 257-270 3-16 (58)
123 cd02682 MIT_AAA_Arch MIT: doma 24.9 1.5E+02 0.0032 22.4 4.3 42 231-272 28-71 (75)
124 KOG1127 TPR repeat-containing 24.8 4E+02 0.0086 30.1 8.9 133 175-320 528-667 (1238)
125 PF12895 Apc3: Anaphase-promot 24.5 60 0.0013 23.9 2.1 27 215-241 24-50 (84)
126 PF07219 HemY_N: HemY protein 24.3 1.2E+02 0.0026 24.1 3.9 34 212-245 55-88 (108)
127 PF12569 NARP1: NMDA receptor- 24.0 2.1E+02 0.0047 29.5 6.7 39 211-249 189-227 (517)
128 COG4235 Cytochrome c biogenesi 24.0 82 0.0018 30.1 3.3 38 213-250 153-190 (287)
129 KOG2003 TPR repeat-containing 23.2 6.1E+02 0.013 26.2 9.3 159 72-245 361-519 (840)
130 PF13371 TPR_9: Tetratricopept 22.9 1.9E+02 0.0041 20.2 4.5 28 223-250 2-29 (73)
131 COG1849 Uncharacterized protei 22.8 1E+02 0.0023 24.1 3.1 31 214-244 39-69 (90)
132 PF13429 TPR_15: Tetratricopep 22.3 1.6E+02 0.0036 26.8 5.1 86 149-250 163-248 (280)
133 PF10602 RPN7: 26S proteasome 22.3 1.6E+02 0.0035 25.6 4.7 56 216-273 36-91 (177)
134 KOG0543 FKBP-type peptidyl-pro 22.0 1.6E+02 0.0035 29.4 5.0 65 176-250 260-325 (397)
135 KOG3785 Uncharacterized conser 21.1 2E+02 0.0043 28.7 5.3 60 181-253 65-124 (557)
136 COG3063 PilF Tfp pilus assembl 21.0 3.6E+02 0.0077 25.2 6.7 42 210-251 29-70 (250)
137 PRK15174 Vi polysaccharide exp 20.7 5.4E+02 0.012 27.2 9.1 65 177-250 216-284 (656)
138 KOG2796 Uncharacterized conser 20.2 2.9E+02 0.0062 26.5 6.0 85 175-262 214-300 (366)
No 1
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3e-52 Score=400.00 Aligned_cols=305 Identities=32% Similarity=0.499 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHhcCChHHHhccccCcCCCCchhhHHhhhhhhhhHHHHhhhcCCCCChHHHHHHHHHHhhhhc-cCCHHH
Q 020262 14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYR-TGNLVD 92 (328)
Q Consensus 14 ~~yl~~v~~ai~~~dg~~La~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~l~~~~~~~-~~~~~~ 92 (328)
++|++++..++...||+.++...+..+.+ .+. ....+.+.+..+++... .||++++..|.++...+. +.+...
T Consensus 1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~--~~~---~~~~~d~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~s 74 (394)
T KOG2688|consen 1 NDYFSQLLSAVARLDGELLAVQLSRRDGH--VQT---SRTVFDAEEERLQQFIG-KPFDTIVGLHLRVLLRVAYPCDAAS 74 (394)
T ss_pred CchHHHHHHHHHhccHHHHHHhcCCCcch--hhc---chhhcccHHHHHHhccC-CCcchhHhHHHHHHhhhccCcchhh
Confidence 47999999999999999999999998877 322 22233455666666554 899999999999877754 567888
Q ss_pred HHHHHHHHHH-HHHHHhccc-CCceehHHHHHHHHHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHHhhhCC----
Q 020262 93 AYLAFEKSAN-AFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK---- 165 (328)
Q Consensus 93 a~~~~~~~~~-~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~f~~~~~D---- 165 (328)
||..+. +.+ ...++++.. +++|++|+++++|.+++.++..+|....+ +...+..+|.+|++++++|+.|++|
T Consensus 75 a~~~~~-~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~ 153 (394)
T KOG2688|consen 75 AFSQQK-LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRAD 153 (394)
T ss_pred hhhhHH-HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccc
Confidence 888877 333 455556555 79999999999999999999999998854 2334678999999999999999999
Q ss_pred --CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 020262 166 --GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (328)
Q Consensus 166 --~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (328)
++|++|+++++|++|+|||++++++||++++|++++.. +..+.++.+|+|+|+||+||++|++.|+.+|+.+|.+||
T Consensus 154 ~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~-~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af 232 (394)
T KOG2688|consen 154 LEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSG-SDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF 232 (394)
T ss_pred cccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccc-cchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999873 678899999999999999999999999999999999999
Q ss_pred HhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHHHHHHHhhCCHHHHHHHHHHhHHHHHH-hHHHHHHhh
Q 020262 244 INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVL-FIYFTLGSL 322 (328)
Q Consensus 244 ~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~k-glylllerl 322 (328)
++||....+|+++|++|+||++|++|++|+..+|++|.+..|.++++|||.||+..|+.++++||.+|++ |+|++|+++
T Consensus 233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l 312 (394)
T KOG2688|consen 233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL 312 (394)
T ss_pred HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence 9999999999999999999999999999999999999988999999999999999999999999999999 999999999
Q ss_pred hhhc
Q 020262 323 QLSI 326 (328)
Q Consensus 323 r~~v 326 (328)
+.+|
T Consensus 313 ~lv~ 316 (394)
T KOG2688|consen 313 PLVV 316 (394)
T ss_pred hHHH
Confidence 8875
No 2
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-43 Score=330.57 Aligned_cols=309 Identities=22% Similarity=0.307 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHhcCChHHHhccccCcCCCCchhhHHhhhhhh---hhHHHHhhhcCCCCChHHHHHHHHHHhhh----hc
Q 020262 14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVF---QDANRLIKQSDNYSPFADITVPLFRSLQH----YR 86 (328)
Q Consensus 14 ~~yl~~v~~ai~~~dg~~La~lls~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iv~~~l~~~~~----~~ 86 (328)
++|++++.+++..+|...|+.|++.++.. .+.+...+..+ ++..+.+.+.. ..+=++.+.-|+..... .+
T Consensus 1 nd~~~tl~~ava~~n~~~l~~cl~~~~re--~~~L~~~l~~d~k~~~~~~~~iqr~-~~~n~~~~tl~~q~~~~l~rd~d 77 (413)
T COG5600 1 NDMANTLLDAVAHGNSSHLTKCLSQNGRE--IAILGKVLTGDSKIDAKLKETIQRP-FGRNDTAVTLVLQKFLNLGRDKD 77 (413)
T ss_pred ChHHHHHHHHHhcCchhhhhhhhccChhH--HHHHhhhcccccCchhhhcceeecc-ccCCchhhhhhhHHHHHhhcCCC
Confidence 37899999999999999999999998754 33333222111 11111111110 11224566666655444 34
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHH----HHH-hCCC---ChhHHHHHHHHHHHH
Q 020262 87 TGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADR----ELA-SNGK---SPEKLKAAGSFLMKV 158 (328)
Q Consensus 87 ~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~----~~~-~~~~---~~~~le~~a~~l~~~ 158 (328)
+|+ ...++...++.++++..+......|+.-....+.+.+..++..++- ... .+++ ..+.+|+++|.|+|+
T Consensus 78 p~s-kr~sel~q~~yk~lt~~~~~~~~~~l~~lv~~~~R~~~~~~~~l~~~~kq~~~~l~~~s~~~~d~l~~~sr~l~R~ 156 (413)
T COG5600 78 PWS-KRSSELLQELYKNLTAELSYSSAPHLEVLVKNAVRMLGREIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRM 156 (413)
T ss_pred hHh-hhhHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHhcccchhhHhhHHHHHHHHHHH
Confidence 444 4455555556666666665555677777666666666555544432 221 1222 268999999999999
Q ss_pred HHhhhCCC------CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcCh
Q 020262 159 FGVLAGKG------SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENF 232 (328)
Q Consensus 159 f~~~~~D~------sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~ 232 (328)
|+.|.+|+ +||+|+|+++|+||++||++++++||+|++|+.+..++|+.+.++++|+|+|+||+|++|+.+.+|
T Consensus 157 Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~ 236 (413)
T COG5600 157 FNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENF 236 (413)
T ss_pred HHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhH
Confidence 99999993 899999999999999999999999999999999987788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcC-CCCChHhhcccCc-cccHHHHHHHhhCCHHHHHHHHHHhHHH
Q 020262 233 PAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEKYNL-VEYSNIVQALRRGDLRLLRHALEEHEDQ 310 (328)
Q Consensus 233 ~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG-~~P~~~ll~~~~l-~~y~~l~~avk~Gnl~~f~~~l~~~~~~ 310 (328)
.+|+-||.+||..||.--.+|+++|+.|+||.+|+.| ..|.+.+|++++. ..|.+|++|||.||+..|+.++++||.+
T Consensus 237 heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ner~ 316 (413)
T COG5600 237 HEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERK 316 (413)
T ss_pred HHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchHHHHhccccchhHHHHHHHHcCCHHHHHHHHHHhHHH
Confidence 9999999999999999888999999999999999975 6788899999995 5799999999999999999999999999
Q ss_pred HHH-hHHHHHH-hhhhhc
Q 020262 311 YVL-FIYFTLG-SLQLSI 326 (328)
Q Consensus 311 f~k-glyllle-rlr~~v 326 (328)
|.+ |+|++|+ +.+.+|
T Consensus 317 ~~~~~l~ltl~~~~~~V~ 334 (413)
T COG5600 317 FAKRGLYLTLLAHYPLVC 334 (413)
T ss_pred HHHcchHHHHHhhccHHH
Confidence 999 9999996 555443
No 3
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=206.44 Aligned_cols=172 Identities=20% Similarity=0.318 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHhh--hCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhH
Q 020262 147 KLKAAGSFLMKVFGVL--AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~--~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
++.+..++++...+.. ++| ..|.-.++|+|++.|..-+.++.+.++++... +| +..+.+++++|.||+||
T Consensus 184 ~l~~~rs~l~~~lrtAtLrhd---~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~---~p--e~~snne~ARY~yY~Gr 255 (493)
T KOG2581|consen 184 RLADIRSFLHALLRTATLRHD---EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV---YP--EAASNNEWARYLYYLGR 255 (493)
T ss_pred chHHHHHHHHHHHHHhhhcCc---chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc---Cc--cccccHHHHHHHHHHhh
Confidence 3555556666666553 234 47888899999999999999999999988654 56 47788899999999999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcC-chHHHHHHHHHHHHHHhhcCCCCChHhhcccCc----cccHHHHHHHhhCCHHH
Q 020262 225 LEVFNENFPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDWLLEKYNL----VEYSNIVQALRRGDLRL 299 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~-~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l----~~y~~l~~avk~Gnl~~ 299 (328)
|.++|+||..|.+++.+|.++.|++ +.++++++.++.|.+++++|.+|.+.++.|+++ .+|..|.+|||.||+++
T Consensus 256 IkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkk 335 (493)
T KOG2581|consen 256 IKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKK 335 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999965 579999999999999999999999999999964 58999999999999999
Q ss_pred HHHHHHHhHHHHHH-hHHHHHHhhhhhc
Q 020262 300 LRHALEEHEDQYVL-FIYFTLGSLQLSI 326 (328)
Q Consensus 300 f~~~l~~~~~~f~k-glylllerlr~~v 326 (328)
|+++++++...|.+ |+|.++.|||+.|
T Consensus 336 F~~~leq~k~~f~~D~ty~LivRLR~NV 363 (493)
T KOG2581|consen 336 FNETLEQFKDKFQADGTYTLIVRLRHNV 363 (493)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 99999999999999 9999999999987
No 4
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.085 Score=49.74 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhhCCC----C-chhHHHHHHHHHHHHHHhcCChhhHHHHHH-H--hhccCCCCCCCCCccchhhhhhhh
Q 020262 151 AGSFLMKVFGVLAGKG----S-KRVGALYLTCQLFKIYFKLGTVHLCRSVIR-S--IETARIFDFEEFPKRDKVTYMYYT 222 (328)
Q Consensus 151 ~a~~l~~~f~~~~~D~----s-Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik-~--i~~~~~p~~~~~~~~~~v~y~YY~ 222 (328)
...++...-..|.+|+ . |..-.+-+-.+.+++|-.-.+-.-.+.+.. + +.++ +|. | --.-+-+=--
T Consensus 164 l~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSA-IPH----P-lImGvIRECG 237 (440)
T KOG1464|consen 164 LQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSA-IPH----P-LIMGVIRECG 237 (440)
T ss_pred HHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhcc-CCc----h-HHHhHHHHcC
Confidence 3345555666788762 2 445556667788888887766555555443 2 2333 442 1 1222334456
Q ss_pred hHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhc--CCCCChHhhcc-c----CccccHHHHHHHhhC
Q 020262 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSI--GILPKDWLLEK-Y----NLVEYSNIVQALRRG 295 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~Lll--G~~P~~~ll~~-~----~l~~y~~l~~avk~G 295 (328)
|+.++-+++|.+|...+=.||.+.-.+-...|...|+||+-.+|++ |.-|=.+-=.+ | ......+++.|....
T Consensus 238 GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 238 GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999977666667778899999999997 55553322112 1 122368899999999
Q ss_pred CHHHHHHHHHHhHH-----HHHH-hHHHHHHhhhh
Q 020262 296 DLRLLRHALEEHED-----QYVL-FIYFTLGSLQL 324 (328)
Q Consensus 296 nl~~f~~~l~~~~~-----~f~k-glylllerlr~ 324 (328)
|+..|++.+..|+. -|++ .+=-++...|.
T Consensus 318 dI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRT 352 (440)
T KOG1464|consen 318 DIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRT 352 (440)
T ss_pred cHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 99999999998864 6777 77666655543
No 5
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.36 E-value=0.0061 Score=37.82 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=29.7
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.++|++|.+++..++|.+|.++++.|++.+|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999864
No 6
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=1.8 Score=42.04 Aligned_cols=136 Identities=10% Similarity=0.164 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC-
Q 020262 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN- 247 (328)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~- 247 (328)
+.++.++....-++|..+|...-|+.++-..++. +-.+...|.+=...|+--...+|=-.+||..++.|.-.=+ .|-
T Consensus 111 ~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~-ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL-~~~d 188 (380)
T KOG2908|consen 111 PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSM-LDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYL-GCSD 188 (380)
T ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccc
Confidence 4799999999999999999999999999887763 1122233433333333333445545567776666543222 233
Q ss_pred -cCchHHHHHHHHHHHHHHhhcCC-CCChHhhc-ccCcc-------c-cHHHHHHHhhCCHHHHHHHHHH
Q 020262 248 -PQSEANIRMILKYLIPVKLSIGI-LPKDWLLE-KYNLV-------E-YSNIVQALRRGDLRLLRHALEE 306 (328)
Q Consensus 248 -~~~~~n~~~IL~~LIpv~LllG~-~P~~~ll~-~~~l~-------~-y~~l~~avk~Gnl~~f~~~l~~ 306 (328)
.+.+.-.++-+.+...+.-++|+ +=+...|- .+.+. . ..++..|.+.||+.+|+.....
T Consensus 189 ~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~ 258 (380)
T KOG2908|consen 189 IDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGV 258 (380)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 12223333446666667777775 66665444 44331 1 4889999999999999986554
No 7
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.37 E-value=0.054 Score=39.47 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|..+|++.++++.+..++..+-.. .| +.+..+++.|.+++..++|.+|.+.|+.++..||.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~-~p--------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL-DP--------DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh-Cc--------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 357899999999998887755322 12 2667788999999999999999999999999999654
No 8
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.36 E-value=0.11 Score=51.60 Aligned_cols=188 Identities=13% Similarity=0.219 Sum_probs=112.1
Q ss_pred CCceehHHHHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChh
Q 020262 112 ESAWALEALYVIAYEIRVLAERADREL-ASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVH 190 (328)
Q Consensus 112 ~~~W~lp~L~~~~~~l~~la~~~D~~~-~~~~~~~~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~ 190 (328)
+..|-++..-.+-..|+.-+.-.+.-. ...|..+ .+ ...-|+ ...-.|..|.+.++ .|+|++.-+|.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~--~~-----~~~~~g--~~~l~~~LGYFSli-gLlRvh~LLGDY~ 139 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDP--DE-----VAGEYG--SSPLYKMLGYFSLI-GLLRVHCLLGDYY 139 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCc--hh-----hhcccc--cccHHHHhhHHHHH-HHHHHHHhccCHH
Confidence 578999988877777776654322211 1111111 11 001110 00013566666555 5789999999999
Q ss_pred hHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc-------------hHHHHHH
Q 020262 191 LCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-------------EANIRMI 257 (328)
Q Consensus 191 l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-------------~~n~~~I 257 (328)
.|-.++..|+-...--++.. .+=.|+.+||.|=-||.-.+|.+|-..|+..+..--... .|.-.+.
T Consensus 140 ~Alk~l~~idl~~~~l~~~V-~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqM 218 (404)
T PF10255_consen 140 QALKVLENIDLNKKGLYTKV-PACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQM 218 (404)
T ss_pred HHHHHhhccCcccchhhccC-cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHH
Confidence 99999998875321122333 345678889999999999999999999999884321111 1333334
Q ss_pred HHHHHHHHhhc-CCCCChHhhcccCccccHHHHHHHhhCCHHHHHHHHHHhHHHHH
Q 020262 258 LKYLIPVKLSI-GILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYV 312 (328)
Q Consensus 258 L~~LIpv~Lll-G~~P~~~ll~~~~l~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~ 312 (328)
...|.-|..+. +++|.. +...-. ..|.+=...+.+||+..|++....---.|+
T Consensus 219 yaLlAic~~l~p~~lde~-i~~~lk-eky~ek~~kmq~gd~~~f~elF~~acPKFI 272 (404)
T PF10255_consen 219 YALLAICLSLCPQRLDES-ISSQLK-EKYGEKMEKMQRGDEEAFEELFSFACPKFI 272 (404)
T ss_pred HHHHHHHHHhCCCCCCHH-HHHHHH-HHHHHHHHHHHccCHHHHHHHHHhhCCCcc
Confidence 33333333333 343332 222110 237788888999999999998875443343
No 9
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=1 Score=43.72 Aligned_cols=209 Identities=14% Similarity=0.171 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhC---------CCChhHHHHHHHHHHHHHHhhhCCCCc
Q 020262 98 EKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASN---------GKSPEKLKAAGSFLMKVFGVLAGKGSK 168 (328)
Q Consensus 98 ~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~---------~~~~~~le~~a~~l~~~f~~~~~D~sK 168 (328)
.+++..++..|...+.+ .+.-..+|++.+.+|..--+..-.. -.+.....+|-..++...+-...= ..
T Consensus 87 aKlvR~Lvd~~~~~~~~--~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl-DD 163 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDG--TGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL-DD 163 (411)
T ss_pred HHHHHHHHHHHccCCCC--cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-cc
Confidence 35677777777543322 2245568888888886432211000 000011111111122211111100 11
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
|.-..-+--..-|.||.++|+.=++.-+-+-..+.+. -..|...|.+----.|.+++-+-||..|+.+|-+||.--..
T Consensus 164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana--iYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA--IYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc--cccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 3333334446678999999998888766555443221 14678889999999999999999999999999999987553
Q ss_pred Cch-HHHHHHHHHHHHHHhhcCCCCCh-------Hhhccc---CccccHHHHHHHhhCCHHHHHHHHHHhHHHHH
Q 020262 249 QSE-ANIRMILKYLIPVKLSIGILPKD-------WLLEKY---NLVEYSNIVQALRRGDLRLLRHALEEHEDQYV 312 (328)
Q Consensus 249 ~~~-~n~~~IL~~LIpv~LllG~~P~~-------~ll~~~---~l~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~ 312 (328)
-.. .+--..|+|++-+++.++..-.. ..++ | ++..-..+++|..+-+++.|..++.+|+.++.
T Consensus 242 ~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 242 LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 322 34445699999999998754332 2222 2 22346788899999999999999999876543
No 10
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=94.80 E-value=0.04 Score=43.12 Aligned_cols=43 Identities=33% Similarity=0.515 Sum_probs=37.1
Q ss_pred ccHHHHHHHhhCCHHHHHHHHHHh-HHHHHH-hHHHHHHhhhhhc
Q 020262 284 EYSNIVQALRRGDLRLLRHALEEH-EDQYVL-FIYFTLGSLQLSI 326 (328)
Q Consensus 284 ~y~~l~~avk~Gnl~~f~~~l~~~-~~~f~k-glylllerlr~~v 326 (328)
+|.++++|+++||+..|.+.++++ +.++.+ ++...++.++..+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i 46 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKI 46 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 488999999999999999999999 778888 9999888877654
No 11
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.79 E-value=0.12 Score=36.90 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 180 ~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
-+.|++.|+++-|...++.+-.. . .+-...+|.+|+++..++++.+|...++.|+...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~-~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ-D--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC-S--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 46789999999999999987643 1 2377899999999999999999999999999998864
No 12
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.07 E-value=0.078 Score=32.92 Aligned_cols=32 Identities=16% Similarity=-0.014 Sum_probs=28.3
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.-+|.+|..++..++|.+|.++++.|+...|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34688999999999999999999999999885
No 13
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.03 E-value=3.6 Score=38.53 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.....+.......++ +....--+...+-.+|.++++++-+-.++..+-.... . +...+-..-.|+.-.|.++
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l-~-~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL-E-NNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC-C-HCTTGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh-c-ccccchhHHHHHHHHHHHH
Confidence 56777777777766666554 3444445666778899999999999999886643311 0 0111222234666788889
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHHHHHHHhhCCHHHHHHHHHH
Q 020262 227 VFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEE 306 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l~~y~~l~~avk~Gnl~~f~~~l~~ 306 (328)
+..+|+..|.+.++..-..||.=... + ...--..|++|++.||...|.+++.+
T Consensus 207 L~~~D~v~A~~~~~~~~~~~~~F~~s-------------------------~--E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 207 LAMGDYVAARKALERYCSQDPSFASS-------------------------R--EYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHTT-HHHHHHHHHHHGTTSTTSTTS-------------------------H--HHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCc-------------------------H--HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999998888887732211 0 00124778999999999999999998
Q ss_pred hHH
Q 020262 307 HED 309 (328)
Q Consensus 307 ~~~ 309 (328)
+..
T Consensus 260 ~d~ 262 (282)
T PF14938_consen 260 YDS 262 (282)
T ss_dssp HTT
T ss_pred Hcc
Confidence 854
No 14
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=3.4 Score=39.47 Aligned_cols=211 Identities=16% Similarity=0.175 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHh---CC------CChhHHHHHHHHHHHHHHhhhCCCCc
Q 020262 98 EKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELAS---NG------KSPEKLKAAGSFLMKVFGVLAGKGSK 168 (328)
Q Consensus 98 ~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~---~~------~~~~~le~~a~~l~~~f~~~~~D~sK 168 (328)
.+.+..++.-|.. ..=.+|--..+|..++.+|.+-.+..-. .. -+.....+|-..|+....-...= ..
T Consensus 84 ~KiirtLiekf~~--~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-DD 160 (421)
T COG5159 84 TKIIRTLIEKFPY--SSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-DD 160 (421)
T ss_pred HHHHHHHHHhcCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-cC
Confidence 3456666666653 3335677777888888888543221100 00 00112233333333333222110 12
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
|.-..-+--+.-|.|+++.|+.=++.=+.+-...... -..|..-+..----.|.++|.+-||..|+.++-+||.--+.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans--~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANS--AYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc--cCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 3444444456778999998887777555444332111 13566667777888999999999999999999999987664
Q ss_pred CchHHHH-HHHHHHHHHHhhcCCCCCh-Hhhcc-cCcc--------ccHHHHHHHhhCCHHHHHHHHHHhHH-----HHH
Q 020262 249 QSEANIR-MILKYLIPVKLSIGILPKD-WLLEK-YNLV--------EYSNIVQALRRGDLRLLRHALEEHED-----QYV 312 (328)
Q Consensus 249 ~~~~n~~-~IL~~LIpv~LllG~~P~~-~ll~~-~~l~--------~y~~l~~avk~Gnl~~f~~~l~~~~~-----~f~ 312 (328)
-...-+- ..|+|++-.++.++..-.. .+++. +-+. ....+++|.-+-+++.|..+|.+++. .|+
T Consensus 239 l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~i 318 (421)
T COG5159 239 LKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFI 318 (421)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHH
Confidence 4333222 3489999988888755433 23332 2222 34667778888999999999999865 556
Q ss_pred H
Q 020262 313 L 313 (328)
Q Consensus 313 k 313 (328)
+
T Consensus 319 R 319 (421)
T COG5159 319 R 319 (421)
T ss_pred H
Confidence 5
No 15
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=91.72 E-value=1.3 Score=31.31 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.+.....-.+ . .....+-.+|...++++.+...+...-.. .|. .. ...+..|.++
T Consensus 15 ~~~~A~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~--~~~~~~~~~~ 78 (100)
T cd00189 15 DYDEALEYYEKALELDPDN----A---DAYYNLAAAYYKLGKYEEALEDYEKALEL-DPD------NA--KAYYNLGLAY 78 (100)
T ss_pred cHHHHHHHHHHHHhcCCcc----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCc------ch--hHHHHHHHHH
Confidence 3455555555554432221 1 23345667788889999988887754322 121 11 6778899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..++..+|.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999988873
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.64 E-value=1.3 Score=35.88 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-.+|++.++++.|...+...-.. .| +-...+|++|.++...+++.+|...++.|++.+|.+..
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~-~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAAL-DP--------DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 5567888999999999887755322 12 23567799999999999999999999999999997653
No 17
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.15 E-value=0.37 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=28.6
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
..+|-+|.++...+++.+|.+++..|+...|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3578899999999999999999999999887
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.36 E-value=1.5 Score=36.80 Aligned_cols=76 Identities=9% Similarity=-0.069 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc--hHHH
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANI 254 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~n~ 254 (328)
..+-.++.++|+++-+-..++..-.. .| +-...+|.+|..+.-.+++.+|.+.+..|+..+|.+. ..++
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l-~p--------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALML-DA--------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc-CC--------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45667788899999999988855422 12 3467899999999999999999999999999999774 4566
Q ss_pred HHHHHHH
Q 020262 255 RMILKYL 261 (328)
Q Consensus 255 ~~IL~~L 261 (328)
..++.++
T Consensus 133 ~~~~~~l 139 (144)
T PRK15359 133 QNAQIMV 139 (144)
T ss_pred HHHHHHH
Confidence 6665543
No 19
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=90.22 E-value=1.5 Score=32.96 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..+.|.....+....--.+. ....++ .+-++||+.|+++-|-.+++..+.. ...+..+|..|+.+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~--~~~~~~---~la~~~~~~~~y~~A~~~~~~~~~~----------~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNP--NSAYLY---NLAQCYFQQGKYEEAIELLQKLKLD----------PSNPDIHYLLARCL 68 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTH--HHHHHH---HHHHHHHHTTHHHHHHHHHHCHTHH----------HCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCh--hHHHHH---HHHHHHHHCCCHHHHHHHHHHhCCC----------CCCHHHHHHHHHHH
Confidence 34556666666655443321 222222 3788999999999999998762111 12267777889999
Q ss_pred hhhcChHHHHHHHHHH
Q 020262 227 VFNENFPAADQKLSYA 242 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A 242 (328)
+-.++|.+|.++|..|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999876
No 20
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.06 E-value=0.56 Score=34.53 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhcc--CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 172 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETA--RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~--~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
+....+.+-.+|+++|+++.|...++..-.- ..++ ...+.+...+-+|.++...+++.+|.+++++|+..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456678889999999999999888743321 1221 234579999999999999999999999999999764
No 21
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=89.99 E-value=2.7 Score=29.58 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-.+|++.|+++.+...++.+-.. .| ... ...+..|.++...+++.+|.++++.+....|...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~------~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-DP------DNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-CC------ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 4556788899999998888755322 12 111 5688999999999999999999999999887654
No 22
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.00 E-value=1.6 Score=42.79 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=74.8
Q ss_pred CCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch------HHHHHHHHHHHHHHhhcCCC---CChH---h
Q 020262 209 EFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE------ANIRMILKYLIPVKLSIGIL---PKDW---L 276 (328)
Q Consensus 209 ~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~------~n~~~IL~~LIpv~LllG~~---P~~~---l 276 (328)
..+.++...|.||-|-++.=..+|+.|-.+|..++-. |..+. ..+.-||.+|| +.|++ |+-. .
T Consensus 176 h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~-Pa~~vs~~hlEaYkkylLvsLI----~~GK~~ql~k~ts~~~ 250 (422)
T KOG2582|consen 176 HLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT-PAMAVSHIHLEAYKKYLLVSLI----LTGKVFQLPKNTSQNA 250 (422)
T ss_pred CCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHhh----hcCceeeccccchhhh
Confidence 4678899999999999999999999999999888753 33321 23444444443 46865 5432 2
Q ss_pred hccc-Cc-cccHHHHHHHhhCCHHHHHHHHHHhHHHHHH
Q 020262 277 LEKY-NL-VEYSNIVQALRRGDLRLLRHALEEHEDQYVL 313 (328)
Q Consensus 277 l~~~-~l-~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~k 313 (328)
.+-+ ++ .+|.++..+--++.-...+..+.+|.+.|.|
T Consensus 251 ~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~k 289 (422)
T KOG2582|consen 251 GRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTK 289 (422)
T ss_pred HHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Confidence 2222 23 3799999999999999999999999999999
No 23
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.91 E-value=0.81 Score=32.73 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=31.6
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
....+-.|.+++.+++|.+|.++++.|++.+|.+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~ 38 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE 38 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 456788999999999999999999999999987653
No 24
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.62 E-value=0.8 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=28.3
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.|.+|+++...+++.+|.+.|+..+...|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 5889999999999999999999999998864
No 25
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.19 E-value=2.7 Score=39.94 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------------------C-----------CCCCccchhhhhhhh
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------------------F-----------EEFPKRDKVTYMYYT 222 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~-------------------~-----------~~~~~~~~v~y~YY~ 222 (328)
+-...+...+|.++|+++++++.++++...+ .+ + +.++.+ +.=..=+
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng~ 207 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHHH
Confidence 3455578889999999999999999886431 00 0 112221 2223345
Q ss_pred hHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC--hHhhcccC-ccccHHHHHHHhhCCHHH
Q 020262 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK--DWLLEKYN-LVEYSNIVQALRRGDLRL 299 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~--~~ll~~~~-l~~y~~l~~avk~Gnl~~ 299 (328)
+...+..++|.+|++.|..|+..-|.+ .-.|.-+|.+..++|+=+. ..++.+.. ..+-.|++..+.. .-..
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~-----~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~-~~~~ 281 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPND-----PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAE-KEAE 281 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCH-----HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHH-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHH-HHHH
Confidence 667788899999999998888654432 2356678888888888754 33555422 1234455555442 2245
Q ss_pred HHHHHHH
Q 020262 300 LRHALEE 306 (328)
Q Consensus 300 f~~~l~~ 306 (328)
||++..+
T Consensus 282 FD~~~~k 288 (290)
T PF04733_consen 282 FDRAVAK 288 (290)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 6655544
No 26
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.84 E-value=1.3 Score=29.27 Aligned_cols=33 Identities=18% Similarity=-0.066 Sum_probs=29.6
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-+|+.+.-.|++.+|...|+.++..+|.+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 466899999999999999999999999997753
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.42 E-value=11 Score=39.59 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
...++.+.-+++.+.|-+. -.++ |.|-.||-..|+++.+..+.+. ++- +|.+... +=-+|.+
T Consensus 335 ~V~ea~~cYnkaL~l~p~h---adam----~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa--------~nNLa~i 397 (966)
T KOG4626|consen 335 SVTEAVDCYNKALRLCPNH---ADAM----NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAA--------HNNLASI 397 (966)
T ss_pred chHHHHHHHHHHHHhCCcc---HHHH----HHHHHHHHHhccchHHHHHHHHHHhh--Chhhhhh--------hhhHHHH
Confidence 4556677778888888764 2333 4556689999999999998874 442 4554332 2247888
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcC
Q 020262 226 EVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
+=.|+++.+|-.|...|++.-|.-
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~f 421 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTF 421 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchH
Confidence 889999999999999999998853
No 28
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.61 E-value=3.8 Score=29.12 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhc-ChHHHHHHHHHHHHhcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCN 247 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~ 247 (328)
..+=.+|++.|+++-+...++..-.. -| ..+..+|.+|..++..+ ++.+|.++++.|+..-|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~-~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIEL-DP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH-ST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35557889999999998888743222 12 23568999999999999 79999999999998755
No 29
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=83.34 E-value=25 Score=29.16 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.+..... .|++=+ -..--.|-+++...|+++-+...+..+... .-...+....|.++
T Consensus 63 ~~~~A~~~l~~~~~~~-~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----------~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 63 DYDEAKAALEKALANA-PDPELK---PLARLRLARILLQQGQYDEALATLQQIPDE----------AFKALAAELLGDIY 128 (145)
T ss_pred CHHHHHHHHHHHHhhC-CCHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHhccCc----------chHHHHHHHHHHHH
Confidence 5677788888777655 332111 111224678999999999999998764321 12334677899999
Q ss_pred hhhcChHHHHHHHHHHH
Q 020262 227 VFNENFPAADQKLSYAL 243 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~ 243 (328)
+-+|++.+|...++.|+
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999998885
No 30
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.65 E-value=2 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=27.3
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
..++-+|..++..+++.+|..+++.|+..-|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677899999999999999999999877553
No 31
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=20 Score=36.70 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=91.5
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 167 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 167 sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
+++....+.--.+--+|.+.++..-...++.+|.... ..+..+......++|-.|.+.+.+++|.||...|.+-+...
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~n--t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLN--TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCC--CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 5566666666677789999999888888888775321 12233445677899999999999999999999999999886
Q ss_pred CcCchHHHHHHHHHHHHHH---hhc--------CCCCChHhhcccC-c-------cccHHHHHHHhhCCHHHHHHHHHHh
Q 020262 247 NPQSEANIRMILKYLIPVK---LSI--------GILPKDWLLEKYN-L-------VEYSNIVQALRRGDLRLLRHALEEH 307 (328)
Q Consensus 247 ~~~~~~n~~~IL~~LIpv~---Lll--------G~~P~~~ll~~~~-l-------~~y~~l~~avk~Gnl~~f~~~l~~~ 307 (328)
++-.+-|+.--+|+-.+ +.. |-.|+.++-.|-+ . ..|.+|-++...--...-+++..++
T Consensus 476 --naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 476 --NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKH 553 (629)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 44455555533333333 333 3467777766643 2 3577777776542244445555554
Q ss_pred H
Q 020262 308 E 308 (328)
Q Consensus 308 ~ 308 (328)
+
T Consensus 554 q 554 (629)
T KOG2300|consen 554 Q 554 (629)
T ss_pred H
Confidence 3
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=79.37 E-value=45 Score=29.56 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc--------CChhhHHHHHHHhhccCCCCCCCCC-------
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL--------GTVHLCRSVIRSIETARIFDFEEFP------- 211 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl--------~~~~l~~~lik~i~~~~~p~~~~~~------- 211 (328)
..++|...+.+..+..-++..-..+.+.++ .+|++. |+++.|...+..+-.. .|.-....
T Consensus 85 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 85 DYAEAIAAADRFIRLHPNHPDADYAYYLRG----LSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMD 159 (235)
T ss_pred CHHHHHHHHHHHHHHCcCCCchHHHHHHHH----HHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHH
Confidence 455666666666554443321222334333 344443 6677777776655332 34211110
Q ss_pred --ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 212 --KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 212 --~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
......+.+.+|.+++-.+++.+|...++.++..+|.+
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 00111345689999999999999999999999999965
No 33
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=79.08 E-value=9.6 Score=29.39 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-.+|++.|+++.+...++.+-.. .|. . ......+|..|.++.-.+++.+|..++..++..-|.+.
T Consensus 44 ~l~~~~~~~~~~~~A~~~~~~~~~~-~p~---~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 44 WLGEAYYAQGKYADAAKAFLAVVKK-YPK---S--PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHH-CCC---C--CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 4677899999999999999876532 221 1 12245589999999999999999999999999988654
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=78.46 E-value=41 Score=28.63 Aligned_cols=77 Identities=14% Similarity=-0.030 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 168 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 168 Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
.+.........+...|.+.|+++-+...++..-.. .|+ ..+....++-+|.++...++|.+|.+++..|+...|
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL-EED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34444445567788999999999998888744321 121 123467889999999999999999999999999877
Q ss_pred cCc
Q 020262 248 PQS 250 (328)
Q Consensus 248 ~~~ 250 (328)
...
T Consensus 104 ~~~ 106 (172)
T PRK02603 104 KQP 106 (172)
T ss_pred ccH
Confidence 553
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=77.76 E-value=66 Score=30.65 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.+.+..+|.+.|+++-+...++.+.... |. .+......|++-+|..+.-++++.+|.+.+..|+...|.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 212 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLG-GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhc-CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC
Confidence 3456667777777777776666554321 11 111233445555666666677777777777777766554
No 36
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.27 E-value=3 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 220 YYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
..+|+++.-.++|.+|.+.++.|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999977544
No 37
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.33 E-value=56 Score=28.56 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
++.|.+...++..-|.+. +.+.. +.-.++++.+-.+++..+.+.+...++. +. ..-+..-+.+..=|.|..++
T Consensus 52 ~~~A~k~y~~~~~~~~~~-~~~id---~~l~~irv~i~~~d~~~v~~~i~ka~~~--~~-~~~d~~~~nrlk~~~gL~~l 124 (177)
T PF10602_consen 52 LEEALKAYSRARDYCTSP-GHKID---MCLNVIRVAIFFGDWSHVEKYIEKAESL--IE-KGGDWERRNRLKVYEGLANL 124 (177)
T ss_pred HHHHHHHHHHHhhhcCCH-HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHH--Hh-ccchHHHHHHHHHHHHHHHH
Confidence 344555555555555552 22333 3347899999999999999998887754 22 11234566778999999999
Q ss_pred hhcChHHHHHHHHHHHHh
Q 020262 228 FNENFPAADQKLSYALIN 245 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~ 245 (328)
.+++|.+|-+.|..+...
T Consensus 125 ~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 125 AQRDFKEAAELFLDSLST 142 (177)
T ss_pred HhchHHHHHHHHHccCcC
Confidence 999999999988877643
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=73.42 E-value=17 Score=27.87 Aligned_cols=67 Identities=7% Similarity=0.018 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-..+++.|+++-+...+..+... .|+ .+ ....-+|.+|+.++-.++|.+|...+..+....|.+.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-YPK---ST--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC---cc--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 4456678889999888888766432 231 11 1234568899999999999999999999999988653
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=71.74 E-value=33 Score=29.02 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++-+...+...-.. +. ........+.+|..+...+++.+|...+..|+...|.+.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIED--PL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--cc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 345567789999999999888866432 11 122344566789999999999999999999999887653
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=71.53 E-value=23 Score=31.39 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCC-----CCCC---------CCccchhhhhhhhhHHhhhhcChHHH
Q 020262 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIF-----DFEE---------FPKRDKVTYMYYTGRLEVFNENFPAA 235 (328)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p-----~~~~---------~~~~~~v~y~YY~Gr~~~~~~~~~~A 235 (328)
.+++.+.....=.||++|+++....=-..+.....+ +.+. -...+-+...+.+|++++..+++.+|
T Consensus 13 ~~~~~~~~~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 13 TLTILMVFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 355667777888999999987766544433221100 0000 12234566899999999999999999
Q ss_pred HHHHHHHHHhcCcCc
Q 020262 236 DQKLSYALINCNPQS 250 (328)
Q Consensus 236 ~~~L~~A~~~c~~~~ 250 (328)
.+.+..|++.-|.+.
T Consensus 93 ~~a~~~Al~l~P~~~ 107 (198)
T PRK10370 93 LLAYRQALQLRGENA 107 (198)
T ss_pred HHHHHHHHHhCCCCH
Confidence 999999999988654
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=71.41 E-value=1.6e+02 Score=32.76 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhH
Q 020262 145 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
.+...++-..+++.|..=-.++ . +.|.|=.-||--+++..|-.+--+.... .+..+-...=+|.+||
T Consensus 249 ~~s~~~~~~ll~~ay~~n~~nP---~----~l~~LAn~fyfK~dy~~v~~la~~ai~~------t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 249 SDSYKKGVQLLQRAYKENNENP---V----ALNHLANHFYFKKDYERVWHLAEHAIKN------TENKSIKAESFYQLGR 315 (1018)
T ss_pred hHHHHHHHHHHHHHHhhcCCCc---H----HHHHHHHHHhhcccHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHH
Confidence 3566677788888887655442 2 3445555566667777666654433211 2345556667899999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 225 LEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
-+=-+|||.+|..++..|..-.|.+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999877655
No 42
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=71.24 E-value=7.1 Score=28.47 Aligned_cols=33 Identities=15% Similarity=-0.095 Sum_probs=28.6
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
+.++.+..+|.++...++|.+|.++++.|+..+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999874
No 43
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=70.61 E-value=7.8 Score=23.24 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~ 204 (328)
.-|.+++.|.+.|+++.+..+++.++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 357899999999999999999999886543
No 44
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=69.30 E-value=48 Score=29.32 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=52.9
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 168 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 168 Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
++..+-.+.|.+ -.+.+-+++..|..++..++.-..|+ .-.=+++.+.||.|.+...+|+-.++.+....|+.-+
T Consensus 124 ~~~i~~il~N~~-~~~i~~~~~~~a~~~l~~l~~l~~~~---~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l 198 (220)
T TIGR01716 124 RRRVIQLLLNIA-VLLIEKNEFSYAQYFLEKLEKILDPE---DDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIF 198 (220)
T ss_pred HHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHhchh---hhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 344333444444 45566678899999999998643442 1233899999999999999998877777777777654
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=68.74 E-value=9.4 Score=35.98 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=36.9
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHH
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK 259 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~ 259 (328)
...-+||+|+++...+++.+|..++..|+...|.+....+-..+.
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 345689999999999999999999999999998777654444433
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=68.19 E-value=26 Score=33.43 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
.+-.+|++.|+++-+..+++.+... |+ .+.......++.+|..++-.++|.+|.+.+..++...|
T Consensus 74 ~la~~~~~~g~~~~A~~~~~~~l~~--~~---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 74 ALGNLFRRRGEVDRAIRIHQNLLSR--PD---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcC--CC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 4455666666666666666544321 11 12222334555666666666666666666666665443
No 47
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.12 E-value=6.9 Score=24.52 Aligned_cols=29 Identities=14% Similarity=-0.052 Sum_probs=23.8
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
..-+|..+...++|.+|...+..|+..+-
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45679999999999999999999998753
No 48
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.77 E-value=11 Score=26.52 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=28.7
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+.||++.=+.--++|.+|.++...+++.=|.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 789999999999999999999999999988553
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=65.38 E-value=21 Score=32.92 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|.+++.+.|..-.+ . ......+.+|.+.+..+-+..+++.+... +. ..+-..|.+..|.++.
T Consensus 93 ~~~A~~~~~~~~~~~~~-----~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~--~~-----~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGD-----P---RYLLSALQLYYRLGDYDEAEELLEKLEEL--PA-----APDSARFWLALAEIYE 157 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH---T--------T-HHHHHHHHHHHH
T ss_pred ccccccccccccccccc-----c---chhhHHHHHHHHHhHHHHHHHHHHHHHhc--cC-----CCCCHHHHHHHHHHHH
Confidence 34555666666643211 1 12345677899999999999999987642 21 2256788999999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCc
Q 020262 228 FNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-.|+..+|.+.+..|++.-|.+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-H
T ss_pred HcCCHHHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999754
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=64.86 E-value=59 Score=25.83 Aligned_cols=66 Identities=8% Similarity=-0.052 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-..|++.|+++-+...+..+-.. .|. -....+.+|..+...+++.+|...+..|....|.+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-DPY--------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 345666788999999999998876432 121 246778999999999999999999999999877653
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=64.82 E-value=54 Score=27.67 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+-..|++.|+++.+...+...-.. .|. .....+.+|.++...+++.+|.+.+..|+...|.+
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEH-DPD--------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4445666666666666555533211 111 12344556666666666666666666666665543
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=64.34 E-value=55 Score=31.82 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.+.+.++....-++ ...+ ..+..+|.++|+++.|...+...-.. .| .....+|.+|.++
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~----~~a~---~~~a~~~~~~g~~~eAl~~~~~Al~l-~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNN----AELY---ADRAQANIKLGNFTEAVADANKAIEL-DP--------SLAKAYLRKGTAC 80 (356)
T ss_pred CHHHHHHHHHHHHHhCCCC----HHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh-Cc--------CCHHHHHHHHHHH
Confidence 4556666665554432222 2333 35667889999999998877654322 12 2234578899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+..++|.+|..+|..|+..-|.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999988765
No 53
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=64.27 E-value=6.6 Score=27.68 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=43.0
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 184 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
++.|+++-|-.+++.+-.. .|.+ ...++.+|++++-.+++.+|.+.|..+....|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-------~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-------NPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-------TTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH-------CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4667788888888765432 2333 3455689999999999999999999999998874
No 54
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.48 E-value=2.2e+02 Score=29.71 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...+-..|++.|+++.+...++.+-.. .|. .+.-.+.+|..++-.++|.+|.+.+..++..+|.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 193 (899)
T TIGR02917 127 LLALRGLAYLGLGQLELAQKSYEQALAI-------DPR--SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV 193 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCC--ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 3345667788999999988888755422 121 233567888999999999999999999998888654
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=59.13 E-value=1.5e+02 Score=27.66 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+.+-.+|.+.|+++.+...+...-.. .|+ . ...++.+|..+...+++.+|.+.+..|+...|.+.
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~------~--~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLEL-DPT------Y--NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCC------C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45667888888888888766643221 122 1 23457788888888999999999999999888765
No 56
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.93 E-value=29 Score=32.43 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=44.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 184 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
++-++++-+-..++.+-.. .|+-. ..-.-+|++|..+.-+++|.+|..++...+..-|.+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~-yP~s~-----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK-YPDST-----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH-CcCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3447888777777765432 34311 2233469999999999999999999999998888654
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=58.57 E-value=39 Score=29.96 Aligned_cols=67 Identities=6% Similarity=-0.148 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-..|++.|+++.+...+..+-.. .|. ......-+|.+|..+.-.+++.+|.+.+..+++..|.+.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESR-YPF-----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC-----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 4556789999999998888766432 231 112333479999999999999999999999999999665
No 58
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=56.57 E-value=69 Score=24.57 Aligned_cols=73 Identities=26% Similarity=0.267 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHHHHHHHhhCCHHHHHHHHHHh
Q 020262 232 FPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEH 307 (328)
Q Consensus 232 ~~~A~~~L~~A~~~c~~~~--~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l~~y~~l~~avk~Gnl~~f~~~l~~~ 307 (328)
+.++...|..++-.+-.+. ....+.+...+-++....+. ....+.. ....+..|++||+.||..+-.+++.+|
T Consensus 48 ~~~~~~~fh~~l~~~~~N~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~-~~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 48 FIEADIEFHRALAEASGNPYLIQILERLRDRLQRFRYLSIR--SKEDLER-SLEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhh--hhhhhhh-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666775554332 12333333333333333222 2222211 234689999999999999999999887
No 59
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=54.62 E-value=31 Score=29.91 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=34.8
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc--CchHHHHHHHHHHH
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP--QSEANIRMILKYLI 262 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~--~~~~n~~~IL~~LI 262 (328)
+-.||.|..++.-++...|.+.|..|+..|.. ....-+++.-.+|-
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 45789999999999999999999999999942 22334444444443
No 60
>PF13041 PPR_2: PPR repeat family
Probab=53.69 E-value=21 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~ 204 (328)
.-|.++..|.+.|+++.|..+++.+....+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 458899999999999999999999987654
No 61
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=53.19 E-value=1.3e+02 Score=31.39 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-.+|+..|+++.+..++..+-.. .|. ....+++.|.++...+++.+|.+.+..|+...|.+.
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTA-DPG--------NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 3445667777777777777655332 121 234567777777777777777777777777766543
No 62
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.25 E-value=76 Score=34.20 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~-------~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...++..|.+.++++-+...+..+... .|+ ....|..+.....+..|.++...+++.+|.+.|+.+...-|.
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345666788999999999888877654 231 123456677788899999999999999999999999999886
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCh-Hhhcc----cCc---cccHHHHHHHhhCCHHHHHHHHHHhH
Q 020262 249 QSEANIRMILKYLIPVKLSIGILPKD-WLLEK----YNL---VEYSNIVQALRRGDLRLLRHALEEHE 308 (328)
Q Consensus 249 ~~~~n~~~IL~~LIpv~LllG~~P~~-~ll~~----~~l---~~y~~l~~avk~Gnl~~f~~~l~~~~ 308 (328)
+. .++..+.-+-+-.|+.... +.+++ .+- ..|....-+++.|++..-.+.+++-.
T Consensus 392 n~-----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 392 NQ-----GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 64 2344444444456764322 12222 111 12556667899998776666665543
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=51.58 E-value=29 Score=38.68 Aligned_cols=92 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhh-ccc-Ccc----cc
Q 020262 212 KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLL-EKY-NLV----EY 285 (328)
Q Consensus 212 ~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll-~~~-~l~----~y 285 (328)
..-+|.|+|-.|+.+..++|+.+|...|+.|+..-|.+.. +...|.-.-+-.|+.+.-.-. ++- .+. .|
T Consensus 40 ~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~-----~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~ 114 (987)
T PRK09782 40 RHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIP-----LTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARL 114 (987)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 3457889999999999999999999999999999887732 225555555667888866433 221 121 23
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHHHHH
Q 020262 286 SNIVQALRRGDLRLLRHALEEHEDQYVL 313 (328)
Q Consensus 286 ~~l~~avk~Gnl~~f~~~l~~~~~~f~k 313 (328)
.... |.+..++++++.++.....
T Consensus 115 ~~~L-----a~i~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 115 ERSL-----AAIPVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHH-----HHhccChhHHHHHHHHHHh
Confidence 3333 4447777777777665443
No 64
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.49 E-value=30 Score=20.28 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCC
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARI 204 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~ 204 (328)
-|.+++.|.+.|+++-+..+++.+....+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGI 31 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999987644
No 65
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=51.28 E-value=46 Score=28.35 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=43.2
Q ss_pred CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC
Q 020262 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK 273 (328)
Q Consensus 210 ~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~ 273 (328)
.+......++|..|..+...++|.+|..++..|+...|... +.-.++..+.-+..-+|++..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~~~g~~~~ 90 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--DRSYILYNMGIIYASNGEHDK 90 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcCCHHH
Confidence 45778888999999999999999999999999998765422 112233333333344566543
No 66
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=51.16 E-value=59 Score=26.80 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=59.2
Q ss_pred hcCChhhHHHHHHHhhccCCCCCCCCCcc-chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 020262 185 KLGTVHLCRSVIRSIETARIFDFEEFPKR-DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIP 263 (328)
Q Consensus 185 kl~~~~l~~~lik~i~~~~~p~~~~~~~~-~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIp 263 (328)
..++...+...+..+... .| .+ ....=.+.+|..++.+++|.+|.+.|.+++...|....+ ..+...|.-
T Consensus 23 ~~~~~~~~~~~~~~l~~~-~~------~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--~~a~l~LA~ 93 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-YP------SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--PLARLRLAR 93 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-CC------CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH--HHHHHHHHH
Confidence 345555566555555432 22 22 223336679999999999999999999999988654332 222223333
Q ss_pred HHhhcCCCCCh-HhhcccCccccHHHHHHHhhCCHH
Q 020262 264 VKLSIGILPKD-WLLEKYNLVEYSNIVQALRRGDLR 298 (328)
Q Consensus 264 v~LllG~~P~~-~ll~~~~l~~y~~l~~avk~Gnl~ 298 (328)
+.+-.|++..- ..|++..-..|.+.+.. ..||+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~-~~Gdi~ 128 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAE-LLGDIY 128 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHH-HHHHHH
Confidence 33445665433 33444332346665543 345543
No 67
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=50.84 E-value=22 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=26.8
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 220 YYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|=.|+.++-.++|.+|.+.++.++..-|.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 31 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP 31 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4578999999999999999999999877543
No 68
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=50.56 E-value=59 Score=33.80 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+-.+|+++|+++-|...++..-.. .| . ....+++.|.++...++|.+|.+.+..|+...|..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~-~P------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKN-FP------E--APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CC------C--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 4556778888888888777754321 22 2 13456778999999999999999999999998864
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=50.13 E-value=3.1e+02 Score=28.35 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=87.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHhh
Q 020262 86 RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKS---PEKLKAAGSFLMKVFGVL 162 (328)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~---~~~le~~a~~l~~~f~~~ 162 (328)
+.+.+.+|-+.|.+.+......|+.. .| .++.-+..+|....+. |+- .+.++.|-++..+ .
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~-----h~---~va~~l~nLa~ly~~~----GKf~EA~~~~e~Al~I~~~----~ 316 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGED-----HP---AVAATLNNLAVLYYKQ----GKFAEAEEYCERALEIYEK----L 316 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCC-----CH---HHHHHHHHHHHHHhcc----CChHHHHHHHHHHHHHHHH----h
Confidence 45678999999999999999888752 12 2344444555433221 110 1233444443333 3
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc--chhhhhhhhhHHhhhhcChHHHHHHHH
Q 020262 163 AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR--DKVTYMYYTGRLEVFNENFPAADQKLS 240 (328)
Q Consensus 163 ~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~--~~v~y~YY~Gr~~~~~~~~~~A~~~L~ 240 (328)
.+....+.+ ...+.+--+|-..|.++.+..+...--.. .. +.+... ...-++==+|+.+...++|.+|++.+.
T Consensus 317 ~~~~~~~v~--~~l~~~~~~~~~~~~~Eea~~l~q~al~i-~~--~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 317 LGASHPEVA--AQLSELAAILQSMNEYEEAKKLLQKALKI-YL--DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred hccChHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHH-HH--hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 332233333 34567777888999999999888733211 00 112222 334455568999999999999999999
Q ss_pred HHHHhcC
Q 020262 241 YALINCN 247 (328)
Q Consensus 241 ~A~~~c~ 247 (328)
.|+..-+
T Consensus 392 ~ai~~~~ 398 (508)
T KOG1840|consen 392 KAIQILR 398 (508)
T ss_pred HHHHHHH
Confidence 9998764
No 70
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=49.93 E-value=57 Score=30.44 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=60.5
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhc-ChHHHHHHHHHHHHhcCc---C------chHH
Q 020262 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE-NFPAADQKLSYALINCNP---Q------SEAN 253 (328)
Q Consensus 184 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~~---~------~~~n 253 (328)
.+-|++++|..++..++... +..+.-.....+.=.|-.|+-..-++ +|.+|-.+|+.|+..|.. . ...-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999887532 11122234577777889999999999 999999999999999733 1 1134
Q ss_pred HHHHHHHHHHHHhhcCC
Q 020262 254 IRMILKYLIPVKLSIGI 270 (328)
Q Consensus 254 ~~~IL~~LIpv~LllG~ 270 (328)
+-.||..|+-+-+-.|.
T Consensus 83 r~~iL~~La~~~l~~~~ 99 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 55667777655544443
No 71
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=49.86 E-value=16 Score=21.22 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=20.5
Q ss_pred hhhhhhHHhhhhcChHHHHHHHH
Q 020262 218 YMYYTGRLEVFNENFPAADQKLS 240 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~ 240 (328)
..+.+|+.+...|++.+|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999999875
No 72
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=49.22 E-value=1.3e+02 Score=30.64 Aligned_cols=78 Identities=10% Similarity=0.231 Sum_probs=51.9
Q ss_pred cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHH-H
Q 020262 186 LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIP-V 264 (328)
Q Consensus 186 l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIp-v 264 (328)
-...+.|+.++..... .||. -+-|.|+.||++..+++..+|-+.|+.|... ++..++.+.+..+=+- +
T Consensus 246 ~~~~~~a~~lL~~~~~-------~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK-------RYPN--SALFLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CCCHHHHHHHHHHHHH-------hCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHH
Confidence 4567788888887653 3443 5678999999999999999999999999943 2234444444333222 2
Q ss_pred HhhcCCCCCh
Q 020262 265 KLSIGILPKD 274 (328)
Q Consensus 265 ~LllG~~P~~ 274 (328)
.+.+++.+..
T Consensus 315 ~~~~~~w~~A 324 (468)
T PF10300_consen 315 HMFQHDWEEA 324 (468)
T ss_pred HHHHchHHHH
Confidence 3334555443
No 73
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.45 E-value=34 Score=31.34 Aligned_cols=89 Identities=21% Similarity=0.163 Sum_probs=49.9
Q ss_pred hHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhh-cCCCCCh-Hhhcc-cCccc-c-HHHHH-HHhhCC
Q 020262 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGILPKD-WLLEK-YNLVE-Y-SNIVQ-ALRRGD 296 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~Ll-lG~~P~~-~ll~~-~~l~~-y-~~l~~-avk~Gn 296 (328)
|--.+.+++|.+|...++.|+..||..+.. .|.||-.==.+.++ +|+--+. .-..+ ..|.+ | ..|.+ |----+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 555678899999999999999999987753 33444322222222 3332111 00000 11212 3 22222 555566
Q ss_pred HHHHHHHHHHhHHHHH
Q 020262 297 LRLLRHALEEHEDQYV 312 (328)
Q Consensus 297 l~~f~~~l~~~~~~f~ 312 (328)
..+|+++|+.+...+-
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7888888888766543
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=47.99 E-value=1e+02 Score=25.63 Aligned_cols=64 Identities=9% Similarity=-0.152 Sum_probs=49.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
+=..+++.|+++-+-..+...-.. -| ....+++-+|..+...+++.+|...+..|+...|.+..
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~-~P--------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~ 93 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA-QP--------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE 93 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 456778999999888777643221 12 23577789999999999999999999999999887653
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=47.74 E-value=1e+02 Score=30.74 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhh
Q 020262 150 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN 229 (328)
Q Consensus 150 ~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~ 229 (328)
+|.+++++.....-. . +-+++..-+.+.+.+++++|-.+.+..-+. .|. -....|+++++|...
T Consensus 218 ~AI~ll~~aL~~~p~-----d--~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~--------~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 218 EAIRLLNEALKENPQ-----D--SELLNLQAEFLLSKKKYELALEIAKKAVEL-SPS--------EFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHHHHHHhCCC-----C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-Cch--------hHHHHHHHHHHHHhc
Confidence 455566665532222 2 667778889999999999999998854332 131 235678899999999
Q ss_pred cChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHH
Q 020262 230 ENFPAADQKLSYALINCNPQSEANIRMILKYLIPVK 265 (328)
Q Consensus 230 ~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~ 265 (328)
++|.+|-. |+..||-...+. +-.++...|..
T Consensus 282 ~d~e~ALl----aLNs~Pm~~~~~-k~~~~~~~p~~ 312 (395)
T PF09295_consen 282 GDFENALL----ALNSCPMLTYKD-KYKLKRPVPAK 312 (395)
T ss_pred CCHHHHHH----HHhcCcCCCCcc-chhhhcCCCcc
Confidence 99999985 777888554332 23344444444
No 76
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=46.46 E-value=30 Score=19.92 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhcc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETA 202 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~ 202 (328)
-|.+++.|.+.|+++-+..+++.+...
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 478999999999999999999987643
No 77
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=46.45 E-value=28 Score=22.73 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.5
Q ss_pred hhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 221 YTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
-+|-+.+-.++|.+|-+.+..|+..
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3789999999999999999999964
No 78
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=46.28 E-value=1.2e+02 Score=31.52 Aligned_cols=69 Identities=10% Similarity=-0.016 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 171 GALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.+..+.+...-.|-..|+++.+..++...-.. -|... ..+..+|+++...+++.+|.+.++.|...++.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l-------~p~~~--~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALII-------DPECD--IAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-------CCCcH--HHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33444555555566678898888887643211 12222 24567899999999999999999999998764
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=44.39 E-value=1.1e+02 Score=25.76 Aligned_cols=88 Identities=9% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHH
Q 020262 156 MKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAA 235 (328)
Q Consensus 156 ~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A 235 (328)
...|+.++.-.......-.....+-.+|.+.|+++.+...+...-... +-...........++..|+.+.-.+++.+|
T Consensus 55 ~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la~i~~~~~~~~~~~g~~~~A 132 (168)
T CHL00033 55 LQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMAVICHYRGEQAIEQGDSEIA 132 (168)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhhHHHHHcccHHHH
Q ss_pred HHHHHHHHHh
Q 020262 236 DQKLSYALIN 245 (328)
Q Consensus 236 ~~~L~~A~~~ 245 (328)
...+.+|+..
T Consensus 133 ~~~~~~a~~~ 142 (168)
T CHL00033 133 EAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHH
No 80
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.07 E-value=69 Score=30.15 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|.-+.. ++-|++.-+..-|++.-.. .|.-...|. =+||+|..++-+++|.+|-..+..+.+.-|++.
T Consensus 146 ~~A~~~-~ksgdy~~A~~~F~~fi~~-YP~s~~~~n-----A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 146 NAALDL-YKSGDYAEAEQAFQAFIKK-YPNSTYTPN-----AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHc-CCCCcccch-----hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 334443 3556688888877765432 454222333 379999999999999999999999998877554
No 81
>PLN03077 Protein ECB2; Provisional
Probab=44.04 E-value=2.4e+02 Score=30.56 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+.|.|+..|.|.|+++-+..+++.+.. .+.++|.- +..-++..+++.+|.+.+.......+++.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~-mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTS-IIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHH-HHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 45778999999999999999999987653 23445543 33345788999999999999887655544
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=43.62 E-value=41 Score=35.52 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=35.9
Q ss_pred CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 211 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 211 ~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
|....+.=.||+..-+-.-++|..|.+++.-|+.|||+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 677888889999999999999999999999999999953
No 83
>PRK14574 hmsH outer membrane protein; Provisional
Probab=40.26 E-value=2e+02 Score=31.56 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCC-------CCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFD-------FEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~-------~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...||-.|..-++++-+..++..+... .|. -...|..+..++..-.+.+++..+++.+|++.|+......|-
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~ 448 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQ-TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA 448 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc-CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 357899999999999999999999863 341 124788999999999999999999999999999999999996
Q ss_pred Cc
Q 020262 249 QS 250 (328)
Q Consensus 249 ~~ 250 (328)
+.
T Consensus 449 n~ 450 (822)
T PRK14574 449 NQ 450 (822)
T ss_pred CH
Confidence 54
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=39.02 E-value=55 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.0
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+-+++|.+|.+.|+.++...|.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH
Confidence 457899999999999999988754
No 85
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.70 E-value=74 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred hhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 221 YTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 221 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-+|.-.+-+|++.+|-.||..|+.-||+..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 367777889999999999999999999543
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=38.06 E-value=3.2e+02 Score=31.04 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+++...+-.++++.|+++.+...++..-.. .| .. ..-++.+|.++.-++++.+|.++++.|+..-|.+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P------~~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQV-DN------TD--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 344455667889999999999988865432 12 11 23466789999999999999999999999988664
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=36.60 E-value=2.3e+02 Score=26.53 Aligned_cols=66 Identities=6% Similarity=-0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
....+-.+|...|+++-+...+...-.. .|. +....+..++.+|++++.+|++.+|...+..+...
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDT-WDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3456678899999999999888754322 121 12233445667999999999999999999999643
No 88
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.59 E-value=60 Score=23.84 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.5
Q ss_pred HHHHHhhCCHHHHHHHHHHhHH
Q 020262 288 IVQALRRGDLRLLRHALEEHED 309 (328)
Q Consensus 288 l~~avk~Gnl~~f~~~l~~~~~ 309 (328)
+++|+++||+..|.+.+.++..
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~ 22 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQE 22 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhh
Confidence 4789999999999999997765
No 89
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=36.40 E-value=57 Score=32.09 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=31.5
Q ss_pred CCccchhhhhhhhhHHhhhhcChHHHHHHHH--HHHHhcCcC
Q 020262 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLS--YALINCNPQ 249 (328)
Q Consensus 210 ~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~--~A~~~c~~~ 249 (328)
.|.+..+.++..+|++++-++++.+|.++|+ .|+...|..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 3444446888899999999999999999999 677776643
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=36.35 E-value=3.4e+02 Score=24.81 Aligned_cols=169 Identities=12% Similarity=0.112 Sum_probs=89.3
Q ss_pred HHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 020262 77 PLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLM 156 (328)
Q Consensus 77 ~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~ 156 (328)
.|.+....+..+++.+|.+.+.+++. .+. ++.|.....+.++. .... ....+.|.....
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP--~s~~a~~a~l~la~----------ayy~-----~~~y~~A~~~~e 93 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN----RYP--FGPYSQQVQLDLIY----------AYYK-----NADLPLAQAAID 93 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH----hCC--CChHHHHHHHHHHH----------HHHh-----cCCHHHHHHHHH
Confidence 56777777888899999887766543 332 34444443332221 1111 113444454444
Q ss_pred HHHHhhhCCCCchhHHHHHHHHH--------HHHHHhcC----ChhhHHHHHHHhhc--cCCCCCCC---------CCcc
Q 020262 157 KVFGVLAGKGSKRVGALYLTCQL--------FKIYFKLG----TVHLCRSVIRSIET--ARIFDFEE---------FPKR 213 (328)
Q Consensus 157 ~~f~~~~~D~sKk~g~~~l~n~l--------~kiYfkl~----~~~l~~~lik~i~~--~~~p~~~~---------~~~~ 213 (328)
+..+.=-++ .+-.-++|..... +.-|+.+. +...+++-++.++. ...|+-+. .-+.
T Consensus 94 ~fi~~~P~~-~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 94 RFIRLNPTH-PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHhCcCC-CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence 443332222 2333334433332 22233332 22223433333322 12454222 1244
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcC
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG 269 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG 269 (328)
.....-++.|++|+-.++|..|-..+++.+.+-|.+.. ....|-+++-.-.-+|
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~--~~eal~~l~~ay~~lg 226 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA--TRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch--HHHHHHHHHHHHHHcC
Confidence 56677899999999999999999999999999886653 3344445444333333
No 91
>PRK15331 chaperone protein SicA; Provisional
Probab=36.25 E-value=58 Score=28.48 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.8
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHH
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM 256 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~ 256 (328)
.||.|..++.-++...|...|..|..+|.....+.|-.
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~ 145 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKAL 145 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 79999999999999999999999999866554554443
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=35.95 E-value=2.6e+02 Score=26.16 Aligned_cols=71 Identities=10% Similarity=-0.110 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 169 RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.....+....+-.+|...|+++.+...++..-.. .|+ . ......+|.++...+++.+|..++..++...|.
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~p~------~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-NPD------D--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC------C--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 3455566667778899999999998888754322 132 1 556788899999999999999999999998764
No 93
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.38 E-value=3.2e+02 Score=25.94 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 172 ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+++.-++|-.-.-.|..+++...++.+.- +||.|.+|.=.+ |...=..++|.+|.+.++.=+..-|.+..
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~lk--am~lEa~~~~~~A~e~y~~lL~ddpt~~v 121 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKLK--AMLLEATGNYKEAIEYYESLLEDDPTDTV 121 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHHH--HHHHHHhhchhhHHHHHHHHhccCcchhH
Confidence 445555777778888999999999998862 568888874221 23333568999999999999988898876
Q ss_pred HHHHHH
Q 020262 252 ANIRMI 257 (328)
Q Consensus 252 ~n~~~I 257 (328)
-.+|+|
T Consensus 122 ~~KRKl 127 (289)
T KOG3060|consen 122 IRKRKL 127 (289)
T ss_pred HHHHHH
Confidence 555555
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=35.19 E-value=1e+02 Score=28.33 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=51.3
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 180 ~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-..+++-|+++.+...++.+... .|. -+..+++ .|.+|..+.-+++|.+|...++..++.-|.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~-yP~---s~~a~~a--~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR-YPF---GPYSQQV--QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCC---ChHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 34567789999999999988754 342 1334444 67999999999999999999999999988764
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.66 E-value=1.7e+02 Score=27.26 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+=..|+..|+++-+...++.+-.. .|+ -|+ .-.-.|.+|.++.-.+++.+|.+.++..+..-|.+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~-yP~---s~~--~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKN-YPK---SPK--AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCC---Ccc--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3446788999999999998877533 332 122 233467799999999999999999999999988765
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=34.37 E-value=1.8e+02 Score=28.20 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=48.4
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchH
Q 020262 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (328)
Q Consensus 180 ~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (328)
-..+|+-++++-|-..++..-.. .|. -..+++.+|..++..++|.+|...++.|+...|.....
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-DPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 35567888888888777644221 121 24578899999999999999999999999999876543
No 97
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.14 E-value=54 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=31.5
Q ss_pred Cccchhhhhhh-----hhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 211 PKRDKVTYMYY-----TGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 211 ~~~~~v~y~YY-----~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|+.....=+|| +|.-++-++++.++-.||..|+.-|++.+
T Consensus 71 ~~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 71 PSDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 34444455555 57778899999999999999999999765
No 98
>PRK12370 invasion protein regulator; Provisional
Probab=33.73 E-value=2e+02 Score=29.63 Aligned_cols=62 Identities=11% Similarity=-0.036 Sum_probs=47.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 180 ~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-.+|...|+++-+...++..-.. .| .+ ...+|++|..+...+++.+|.+++..|++..|...
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l-~P------~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL-SP------IS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh-CC------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 34677889999888877643222 13 22 23468899999999999999999999999999754
No 99
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.60 E-value=1.2e+03 Score=30.30 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
.-+-|...+.++|+.-..+- ...+.=.-.-.++|.. +..-++.=+..++++ ++..|+..|..+|++..|.+.
T Consensus 2751 l~~vcl~~L~~iytlp~vei---qdaF~K~req~~c~l~--~~~e~~~gLevi~sT---Nl~yF~~~q~aeff~lkG~f~ 2822 (3550)
T KOG0889|consen 2751 LPDVCLNQLAKIYTLPNVEI---QDAFQKLREQAKCYLQ--NKNELKTGLEVIEST---NLMYFSDRQKAEFFTLKGMFL 2822 (3550)
T ss_pred ChHHHHHHHHHHhccCcchH---HHHHHHHHHHHHHHhc--ChHHHHHHHHHHhcc---cHHHHhhHHHHHHHHhhhHHH
Confidence 34455556666666655431 1111122233444443 335555556777776 345799999999999999999
Q ss_pred hhhcChHHHHHHHHHHHHhc
Q 020262 227 VFNENFPAADQKLSYALINC 246 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c 246 (328)
.--+++++|.+.+..|...|
T Consensus 2823 ~kL~~~eeAn~~fs~AvQi~ 2842 (3550)
T KOG0889|consen 2823 EKLGKFEEANKAFSAAVQID 2842 (3550)
T ss_pred HHhcCcchhHHHHHHHHHHH
Confidence 99999999999999998754
No 100
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=32.95 E-value=2.2e+02 Score=30.13 Aligned_cols=66 Identities=5% Similarity=-0.037 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchH
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (328)
.+-.+|.+.|+++-+...++.+-.. .| +...+.++.|..+...+++.+|..+|..|+...|.....
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~-~P--------~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE-KG--------VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-Cc--------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 3456677777777777766654322 12 122455666777777888888888888888887766543
No 101
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=31.95 E-value=1.4e+02 Score=21.07 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHHHHH--hHHHHHHhhh
Q 020262 286 SNIVQALRRGDLRLLRHALEEHEDQYVL--FIYFTLGSLQ 323 (328)
Q Consensus 286 ~~l~~avk~Gnl~~f~~~l~~~~~~f~k--glylllerlr 323 (328)
-+|-+|+.+||+.........-+..+-. .+=-.+++|+
T Consensus 5 vaiq~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk 44 (53)
T PF08898_consen 5 VAIQQAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLK 44 (53)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 4677899999999999999988887776 5555556554
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=31.41 E-value=82 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=45.6
Q ss_pred HHhcCC--hhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 183 YFKLGT--VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 183 Yfkl~~--~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
|++.|+ .+-+..+++..-.. -|. -++-++.+|..++-.++|.+|..+++.++..-|++..
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~-dP~--------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALAL-DAN--------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHh-CCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 577777 47777777754332 121 2467899999999999999999999999999887663
No 103
>PRK11906 transcriptional regulator; Provisional
Probab=31.33 E-value=77 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=28.0
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.=+||.|.+.+..|+..+|.++++.|++.-|.
T Consensus 373 ~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 373 SLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 34788999999999999999999999999883
No 104
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=31.25 E-value=90 Score=21.16 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhHHHHHH
Q 020262 286 SNIVQALRRGDLRLLRHALEEHEDQYVL 313 (328)
Q Consensus 286 ~~l~~avk~Gnl~~f~~~l~~~~~~f~k 313 (328)
..+.++|..||+..--++++++.....+
T Consensus 6 ~~i~~~i~~g~~~~a~~~~~~~~~~l~~ 33 (58)
T smart00668 6 KRIRELILKGDWDEALEWLSSLKPPLLE 33 (58)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHhc
Confidence 5688999999999999999998776655
No 105
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=38 Score=35.17 Aligned_cols=88 Identities=17% Similarity=0.238 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHH-----------HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHH
Q 020262 170 VGALYLTCQLFK-----------IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQK 238 (328)
Q Consensus 170 ~g~~~l~n~l~k-----------iYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~ 238 (328)
.+.|+.+..++. -|.++||+.+++.+++.--. ..| ++.+..+ ++|.++.-.++|.+|..+
T Consensus 366 maaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a-------i~P-~Dplv~~-Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 366 MAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA-------IAP-SDPLVLH-ELGVVAYTYEEYPEALKY 436 (611)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh-------cCC-Ccchhhh-hhhheeehHhhhHHHHHH
Confidence 455666666654 37789999999999984321 112 2333333 589999999999999999
Q ss_pred HHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCC
Q 020262 239 LSYALINCNPQSEANIRMILKYLIPVKLSIGIL 271 (328)
Q Consensus 239 L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~ 271 (328)
|+.|+..-+... .+.| ...|....+|+.
T Consensus 437 f~~~l~~ik~~~---~e~~--~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 437 FQKALEVIKSVL---NEKI--FWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhhhcc---cccc--chhHHHHhHHHH
Confidence 999995433211 1111 455666666643
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=30.82 E-value=53 Score=32.60 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=30.3
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
--++++|++++-+..+.+|.++|..|+..-|..+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 6789999999999999999999999998776544
No 107
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.00 E-value=1.2e+02 Score=28.90 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=36.9
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCC
Q 020262 224 RLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP 272 (328)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P 272 (328)
..++..++|.+|+.-|..|+..-|... -.|.-+|++.++.|+=|
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDP-----ETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHhCCCh
Confidence 456889999999999999999877653 44888999999999864
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=29.45 E-value=1.8e+02 Score=29.63 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchh-hhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKV-TYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v-~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
..+.+=-.|+++|+++-+-..++. ++-. | ..... .-+|.+|-.|...+++.+|.++|..|+..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~--P------d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELN--P------NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455578999999999888764 5421 3 22222 33699999999999999999999999986
No 109
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.36 E-value=1.2e+02 Score=17.28 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=16.3
Q ss_pred cChHHHHHHHHHHHHhcCc
Q 020262 230 ENFPAADQKLSYALINCNP 248 (328)
Q Consensus 230 ~~~~~A~~~L~~A~~~c~~ 248 (328)
+++..|.+-++.|+..||.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~ 19 (33)
T smart00386 1 GDIERARKIYERALEKFPK 19 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC
Confidence 4678899999999999993
No 110
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.85 E-value=3.4e+02 Score=26.91 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh-hhhcChHHHHHHHHHHHHhcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE-VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~-~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
|+++ .|=.+..++.+=+++..++. .|... .+..+.|+|.|=.+... =..|+..+|.+.+..++..|..
T Consensus 146 ~lll-SyRdiqdydamI~Lve~l~~--~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 146 NLLL-SYRDIQDYDAMIKLVETLEA--LPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HHHH-HhhhhhhHHHHHHHHHHhhc--cCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 4444 49999999999999988875 34443 67788888877444333 2256666666666666655543
No 111
>PLN03218 maturation of RBCL 1; Provisional
Probab=28.19 E-value=9.3e+02 Score=27.37 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
.-|.++..|.+.|+++-|..+++.+....+ ..+.+||.-.+ ..++-.+++.+|.+.+..+.+...
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-------~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGL-------CPNTITYSILL-VASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCC
Confidence 457888888888888888888887764432 23456776665 456677888888888888876543
No 112
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=27.99 E-value=36 Score=21.18 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=18.1
Q ss_pred hhhhhhhhHHhhhhcChHHHH
Q 020262 216 VTYMYYTGRLEVFNENFPAAD 236 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~ 236 (328)
+.-+|.+|.++...|++.+|.
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 356789999999999999986
No 113
>PLN03218 maturation of RBCL 1; Provisional
Probab=27.81 E-value=9.4e+02 Score=27.32 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
.-|.++..|.+.|+++.+..+++.+....+ ..+.++|.- +...++-.+++.+|.+.+......
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-------~PD~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGV-------KPDEVFFSA-LVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHc
Confidence 446677777777777777777777664432 123455543 334456678888888888887764
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=27.65 E-value=8.5e+02 Score=26.78 Aligned_cols=101 Identities=12% Similarity=-0.027 Sum_probs=65.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh--hcChHHHHHHHHHHHHhcCcCchHHHH
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF--NENFPAADQKLSYALINCNPQSEANIR 255 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~--~~~~~~A~~~L~~A~~~c~~~~~~n~~ 255 (328)
.+...|.+.++.+.+...++.+... .| . ..+|+++.++. .+++.+|.+.++.++..-|.+. +
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~-dp------~-----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~----e 204 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAER-DP------T-----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE----E 204 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhccc-Cc------c-----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH----H
Confidence 5589999999999999988887643 12 2 44458887776 4566669999999999977544 3
Q ss_pred HHHHHHHHHHhhcCC-CCChHhhcccC-------c--cccHHHHHHHhhC
Q 020262 256 MILKYLIPVKLSIGI-LPKDWLLEKYN-------L--VEYSNIVQALRRG 295 (328)
Q Consensus 256 ~IL~~LIpv~LllG~-~P~~~ll~~~~-------l--~~y~~l~~avk~G 295 (328)
..+.|.-...- .|- -|-.++..+++ . .+...+++.||.+
T Consensus 205 ~~~~~~~~l~~-~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 205 VLKNHLEILQR-NRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHH-cCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 33333321111 233 24445555554 1 2468888888777
No 115
>PHA02608 67 prohead core protein; Provisional
Probab=25.85 E-value=78 Score=24.11 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=13.7
Q ss_pred HHHHHHHhhCCHHHHHHH
Q 020262 286 SNIVQALRRGDLRLLRHA 303 (328)
Q Consensus 286 ~~l~~avk~Gnl~~f~~~ 303 (328)
..|+.|||+||+..-.+.
T Consensus 2 e~lIeAIKS~DLV~akK~ 19 (80)
T PHA02608 2 EDLIEAIKSGDLVEAKKE 19 (80)
T ss_pred hHHHHHHhcCcHHHHHHH
Confidence 368999999999754443
No 116
>PF12854 PPR_1: PPR repeat
Probab=25.78 E-value=1e+02 Score=18.99 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHh
Q 020262 174 YLTCQLFKIYFKLGTVHLCRSVIRSI 199 (328)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~lik~i 199 (328)
+.-|.|+..|.|.|+++-|..+++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34578999999999999999998764
No 117
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=25.74 E-value=2.2e+02 Score=31.29 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 168 KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 168 Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
-.+++|+ .+-+.|...|+++.|-+++..+-+. +..+..-+.|=+|+.++-.+.|.+|-+.+..++...|
T Consensus 412 d~~dL~~---d~a~al~~~~~~~~Al~~l~~i~~~--------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p 480 (895)
T KOG2076|consen 412 DDVDLYL---DLADALTNIGKYKEALRLLSPITNR--------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP 480 (895)
T ss_pred hhHHHHH---HHHHHHHhcccHHHHHHHHHHHhcC--------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4455555 5667788888888888888766543 3344466777799999999999999999999999988
Q ss_pred cC
Q 020262 248 PQ 249 (328)
Q Consensus 248 ~~ 249 (328)
.+
T Consensus 481 ~~ 482 (895)
T KOG2076|consen 481 DN 482 (895)
T ss_pred Cc
Confidence 55
No 118
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=25.31 E-value=67 Score=33.12 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=42.2
Q ss_pred cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 186 LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 186 l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.|+++.+..-++..- .++ | + +..++++|+++...|++.+|.++++.|++.-|...
T Consensus 433 ~g~~~~A~~~l~rAl-----~L~--p-s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 433 KGKTDEAYQAINKAI-----DLE--M-S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCCHHHHHHHHHHHH-----HcC--C-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 488888887666322 111 3 2 46889999999999999999999999999888543
No 119
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=25.26 E-value=80 Score=27.13 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=23.7
Q ss_pred hhHHhhhhc-ChHHHHHHHHHHHHhcCcC
Q 020262 222 TGRLEVFNE-NFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 222 ~Gr~~~~~~-~~~~A~~~L~~A~~~c~~~ 249 (328)
+|.-.+.++ +..+|-.||..|+.-||+.
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 455566788 9999999999999999954
No 120
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=5.2e+02 Score=24.40 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHH-HHHHHhhccCCCCCCCCCccchhhhhhhhh
Q 020262 145 PEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCR-SVIRSIETARIFDFEEFPKRDKVTYMYYTG 223 (328)
Q Consensus 145 ~~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~-~lik~i~~~~~p~~~~~~~~~~v~y~YY~G 223 (328)
+.++-.|++..+|. +|.+- .+.-|..|.. -.|+|++++++|. .-.++++ + ....|.=+|++|
T Consensus 23 ~k~y~~ai~~y~ra--I~~nP----~~~~Y~tnra-lchlk~~~~~~v~~dcrralq---l-------~~N~vk~h~flg 85 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRA--ICINP----TVASYYTNRA-LCHLKLKHWEPVEEDCRRALQ---L-------DPNLVKAHYFLG 85 (284)
T ss_pred hhhhchHHHHHHHH--HhcCC----CcchhhhhHH-HHHHHhhhhhhhhhhHHHHHh---c-------ChHHHHHHHHHH
Confidence 55666666655554 35553 3333334433 2588899998876 3444444 1 124577789999
Q ss_pred HHhhhhcChHHHHHHHHHHHHh
Q 020262 224 RLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~ 245 (328)
...+....|.+|-.+|+.|+.+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999654
No 121
>PF13982 YbfN: YbfN-like lipoprotein
Probab=25.03 E-value=1.8e+02 Score=22.47 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCc--cccHHHHHHHhhCCHHHHHHHHHH
Q 020262 237 QKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNL--VEYSNIVQALRRGDLRLLRHALEE 306 (328)
Q Consensus 237 ~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l--~~y~~l~~avk~Gnl~~f~~~l~~ 306 (328)
..|.+|+..|-.++.++-.++--.-.++..|.-.--...+-.+-.. ..|..-++|-++||=..++.-..+
T Consensus 9 s~lk~aYsaCIntaeG~peKv~~CqsvLnvlKqek~hq~fa~~EtVrvlDYQ~CIqAa~tGngqa~~a~C~k 80 (89)
T PF13982_consen 9 SKLKQAYSACINTAEGSPEKVEACQSVLNVLKQEKAHQQFASQETVRVLDYQQCIQAAMTGNGQAYTARCDK 80 (89)
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHhhHHHHhhhccccchhccHHHHHHHHHcCCchHHHHHHHH
Confidence 3488999999888877777766555555555432222223233222 459999999999999888876655
No 122
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=24.99 E-value=18 Score=26.03 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhcCC
Q 020262 257 ILKYLIPVKLSIGI 270 (328)
Q Consensus 257 IL~~LIpv~LllG~ 270 (328)
||.+||||++++|-
T Consensus 3 ~l~~Lipvsi~l~~ 16 (58)
T COG3197 3 ILYILIPVSILLGA 16 (58)
T ss_pred eeeeHHHHHHHHHH
Confidence 67899999999874
No 123
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.95 E-value=1.5e+02 Score=22.45 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHhcCcCchH--HHHHHHHHHHHHHhhcCCCC
Q 020262 231 NFPAADQKLSYALINCNPQSEA--NIRMILKYLIPVKLSIGILP 272 (328)
Q Consensus 231 ~~~~A~~~L~~A~~~c~~~~~~--n~~~IL~~LIpv~LllG~~P 272 (328)
.|.+|-+.|.++++.+|.+..+ .+++|..|+==+.-|.-++|
T Consensus 28 ~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v~ 71 (75)
T cd02682 28 NYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQNP 71 (75)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3578888888888899977654 57778777765555544343
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=24.84 E-value=4e+02 Score=30.13 Aligned_cols=133 Identities=15% Similarity=0.040 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc-chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHH
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR-DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 253 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~-~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 253 (328)
-+--+-.+|-..++.+++..|.=. .+...+ .+.++ ..+. +|.+|+--+++.+|-.+++.|++.-|.+....
T Consensus 528 aaaa~adtyae~~~we~a~~I~l~--~~qka~--a~~~k~nW~~----rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W 599 (1238)
T KOG1127|consen 528 AAAASADTYAEESTWEEAFEICLR--AAQKAP--AFACKENWVQ----RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLW 599 (1238)
T ss_pred hHHHHHHHhhccccHHHHHHHHHH--Hhhhch--HHHHHhhhhh----ccccccCccchhhHHHHHHHHhcCCchhHHHH
Confidence 344566788888999998877322 221111 22222 3333 99999999999999999999999999776332
Q ss_pred HHHHHHHHHHHHhhcCCCCCh-HhhcccC----ccccHHHHHHHhhCCHHHHHHHHHHhHHHHHH-hHHHHHH
Q 020262 254 IRMILKYLIPVKLSIGILPKD-WLLEKYN----LVEYSNIVQALRRGDLRLLRHALEEHEDQYVL-FIYFTLG 320 (328)
Q Consensus 254 ~~~IL~~LIpv~LllG~~P~~-~ll~~~~----l~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~k-glyllle 320 (328)
-.+=-.|. -.|++-+. ..+.|-. ...|.....|+-.-|+.++.++++..+...-+ .++.+.+
T Consensus 600 ~gLGeAY~-----~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q 667 (1238)
T KOG1127|consen 600 LGLGEAYP-----ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ 667 (1238)
T ss_pred HHHHHHHH-----hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111221 13443332 3444432 24599999999999999999999998887666 7776654
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=24.52 E-value=60 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=24.1
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHH
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSY 241 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~ 241 (328)
.-.|.|++|..++-.++|.+|.+.++.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455888899999999999999999888
No 126
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.31 E-value=1.2e+02 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.1
Q ss_pred ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 212 KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 212 ~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
+..+..-....|.+.+.+||+..|++++..|-+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4566666778999999999999999999999655
No 127
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.05 E-value=2.1e+02 Score=29.53 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=33.0
Q ss_pred CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 211 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 211 ~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
|.+-.+--+||++..|-..+++.+|.++...|+.+.|+.
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~ 227 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL 227 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Confidence 344455567999999999999999999999999999864
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=82 Score=30.06 Aligned_cols=38 Identities=13% Similarity=-0.096 Sum_probs=32.8
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-+.=...+|++||-.+++.+|..-+..|.+..|++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~ 190 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP 190 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH
Confidence 34456678999999999999999999999999988664
No 129
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.17 E-value=6.1e+02 Score=26.19 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 020262 72 ADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAA 151 (328)
Q Consensus 72 ~~iv~~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~ 151 (328)
..+-..|++-+..-+..+..++.-...+++..++.---.....|.+..+. ...-..+|+.++-.....--++.-.|.|
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk--~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK--ASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH--HhhhhhhhhhhhhhHHHHHHhccCHHHH
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcC
Q 020262 152 GSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNEN 231 (328)
Q Consensus 152 a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~ 231 (328)
.+ |.+.|..--+ ...-.-+|.|+-+||--|-.+++..--=+=..- ..+.+..+-++. .|-+.+.++|
T Consensus 439 ie-ilkv~~~kdn-----k~~saaa~nl~~l~flqggk~~~~aqqyad~al---n~dryn~~a~~n----kgn~~f~ngd 505 (840)
T KOG2003|consen 439 IE-ILKVFEKKDN-----KTASAAANNLCALRFLQGGKDFADAQQYADIAL---NIDRYNAAALTN----KGNIAFANGD 505 (840)
T ss_pred HH-HHHHHHhccc-----hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh---cccccCHHHhhc----CCceeeecCc
Q ss_pred hHHHHHHHHHHHHh
Q 020262 232 FPAADQKLSYALIN 245 (328)
Q Consensus 232 ~~~A~~~L~~A~~~ 245 (328)
+.+|-+.+.+|+++
T Consensus 506 ~dka~~~ykeal~n 519 (840)
T KOG2003|consen 506 LDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHHHHHHcC
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=22.88 E-value=1.9e+02 Score=20.17 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.6
Q ss_pred hHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 223 GRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+++-+++|.+|.+.++.++..-|.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 5678999999999999999999988654
No 131
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.76 E-value=1e+02 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=26.8
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHH
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALI 244 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~ 244 (328)
+.+.=+|.-|+++.-.||+..|...+++|.-
T Consensus 39 ~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g 69 (90)
T COG1849 39 DMAESYFEDAKYFLEKGDYVTAFAALSYAHG 69 (90)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4556678889999999999999999999974
No 132
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=22.31 E-value=1.6e+02 Score=26.82 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh
Q 020262 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF 228 (328)
Q Consensus 149 e~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~ 228 (328)
++|.+.+.++.+.--+|. -+.+.+..++...|+.+-++.+++...... | .+. .+....|..++.
T Consensus 163 ~~A~~~~~~al~~~P~~~-------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~------~~~--~~~~~la~~~~~ 226 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDP-------DARNALAWLLIDMGDYDEAREALKRLLKAA-P------DDP--DLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHH-TT-H-------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H------TSC--CHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c------CHH--HHHHHHHHHhcc
Confidence 455555555544333321 144566777889999998888888776542 2 111 255677999999
Q ss_pred hcChHHHHHHHHHHHHhcCcCc
Q 020262 229 NENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 229 ~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-+++.+|..++..++..-|.+.
T Consensus 227 lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 227 LGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HT-HHHHHHHHHHHHHHSTT-H
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999877554
No 133
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=22.29 E-value=1.6e+02 Score=25.63 Aligned_cols=56 Identities=13% Similarity=-0.032 Sum_probs=39.7
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC
Q 020262 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK 273 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~ 273 (328)
-.=+--+|.+|+--||+.+|.+++..+...|.. .+++--+...+|=+.+..|..+.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCHHH
Confidence 334556788899999999999999999998763 34444455566666666665543
No 134
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.99 E-value=1.6e+02 Score=29.39 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-+.|--+|.|++.+.-|-.-.. +++ .=|.+ |.=.|=.|+.++-.++|..|...|+.|+..-|.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe--------~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLE--------LDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHh--------cCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 4566778999999884432221 222 11233 33356699999999999999999999999999764
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.06 E-value=2e+02 Score=28.72 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=41.4
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHH
Q 020262 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN 253 (328)
Q Consensus 181 kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 253 (328)
-+||++|+++.+-+..+.+.+.+.|+ ++. --|++-.+++-+.|.+|.. +..+||++...+
T Consensus 65 ~C~fhLgdY~~Al~~Y~~~~~~~~~~------~el---~vnLAcc~FyLg~Y~eA~~----~~~ka~k~pL~~ 124 (557)
T KOG3785|consen 65 HCYFHLGDYEEALNVYTFLMNKDDAP------AEL---GVNLACCKFYLGQYIEAKS----IAEKAPKTPLCI 124 (557)
T ss_pred HHHHhhccHHHHHHHHHHHhccCCCC------ccc---chhHHHHHHHHHHHHHHHH----HHhhCCCChHHH
Confidence 46999999999999999887654332 221 1245555566667888875 667888776544
No 136
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.96 E-value=3.6e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=33.4
Q ss_pred CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 210 FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 210 ~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
....+..+=+-=+|.=|+-++|+..|...|..|+++-|....
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~ 70 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL 70 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 445666677777888889999999999999999998886653
No 137
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.68 E-value=5.4e+02 Score=27.19 Aligned_cols=65 Identities=11% Similarity=-0.089 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHH----HHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPA----ADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~----A~~~L~~A~~~c~~~~ 250 (328)
..+...|++.|+++-+...++..-.. .| +....++.+|..+...+++.+ |...++.|+...|.+.
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~-~p--------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALAR-GL--------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc-CC--------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 34556778889888887777654322 12 124566778888888888885 7888888888888653
No 138
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.16 E-value=2.9e+02 Score=26.54 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc--hH
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EA 252 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~ 252 (328)
+...|.++-++.|...-++.-+..+|.... .++....+ .+-.=-..-+++.+.||.+|+..++++.+.-|.+. ..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~--~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGK--IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchh--HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 344566777777777777776666654321 11111111 11111233466788999999997777777666554 56
Q ss_pred HHHHHHHHHH
Q 020262 253 NIRMILKYLI 262 (328)
Q Consensus 253 n~~~IL~~LI 262 (328)
||-+|+.|+=
T Consensus 291 nKALcllYlg 300 (366)
T KOG2796|consen 291 NKALCLLYLG 300 (366)
T ss_pred hHHHHHHHHH
Confidence 9999998863
Done!