Query 020262
Match_columns 328
No_of_seqs 170 out of 470
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 1.7E-63 6E-68 493.5 24.6 309 10-326 1-342 (455)
2 3t5x_A PCI domain-containing p 100.0 2.8E-34 9.5E-39 257.0 11.6 119 208-326 6-125 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 7.9E-29 2.7E-33 247.1 14.7 169 152-326 211-387 (523)
4 3txn_A 26S proteasome regulato 98.7 9.3E-07 3.2E-11 86.0 20.2 208 99-313 59-287 (394)
5 4b4t_O 26S proteasome regulato 98.4 2.1E-06 7.2E-11 83.3 13.1 155 170-325 124-294 (393)
6 4b4t_P 26S proteasome regulato 98.0 3.4E-05 1.2E-09 76.0 11.9 161 147-310 152-321 (445)
7 4b0z_A RPN12, 26S proteasome r 97.6 0.00011 3.6E-09 66.2 7.7 127 180-308 14-161 (229)
8 4b4t_Q 26S proteasome regulato 97.6 0.0036 1.2E-07 58.7 18.2 164 147-313 150-327 (434)
9 4b4t_R RPN7, 26S proteasome re 96.7 0.02 6.7E-07 55.7 13.9 150 149-305 148-309 (429)
10 1qqe_A Vesicular transport pro 95.2 0.82 2.8E-05 40.8 16.2 216 71-309 33-265 (292)
11 3gw4_A Uncharacterized protein 94.9 0.84 2.9E-05 37.1 14.3 99 147-249 81-180 (203)
12 3nf1_A KLC 1, kinesin light ch 94.7 1.1 3.9E-05 38.7 15.2 148 85-248 122-310 (311)
13 3nf1_A KLC 1, kinesin light ch 94.7 1.2 4.2E-05 38.5 15.4 147 85-248 80-227 (311)
14 3ro3_A PINS homolog, G-protein 94.7 1.1 3.7E-05 34.3 13.7 98 147-248 64-161 (164)
15 3edt_B KLC 2, kinesin light ch 94.5 0.58 2E-05 39.8 12.5 147 85-248 54-201 (283)
16 3ulq_A Response regulator aspa 94.2 0.77 2.6E-05 42.2 13.6 173 79-274 108-283 (383)
17 3sf4_A G-protein-signaling mod 94.1 2.7 9.1E-05 37.9 16.8 123 147-273 242-365 (406)
18 3ro2_A PINS homolog, G-protein 93.4 2.6 8.7E-05 36.4 14.9 98 147-248 238-335 (338)
19 3ro3_A PINS homolog, G-protein 93.2 0.68 2.3E-05 35.5 9.8 99 147-249 24-122 (164)
20 3q15_A PSP28, response regulat 93.1 0.88 3E-05 41.8 12.0 173 79-273 106-279 (378)
21 2vyi_A SGTA protein; chaperone 93.0 1.9 6.7E-05 31.6 12.8 88 147-250 27-114 (131)
22 2ifu_A Gamma-SNAP; membrane fu 93.0 2.6 8.9E-05 37.7 14.7 212 70-305 31-256 (307)
23 3sz7_A HSC70 cochaperone (SGT) 92.8 1.7 5.7E-05 34.7 11.9 89 147-251 26-114 (164)
24 3qky_A Outer membrane assembly 92.8 1.8 6.3E-05 37.2 12.9 148 77-250 18-182 (261)
25 2fbn_A 70 kDa peptidylprolyl i 92.6 1.7 5.8E-05 35.8 12.0 95 147-250 53-156 (198)
26 4a1s_A PINS, partner of inscut 92.6 5.9 0.0002 36.0 17.1 123 148-274 199-322 (411)
27 3k9i_A BH0479 protein; putativ 92.4 1.2 4.1E-05 33.6 10.0 68 174-250 28-95 (117)
28 4gco_A Protein STI-1; structur 92.3 1 3.5E-05 35.0 9.6 88 147-250 28-115 (126)
29 2xev_A YBGF; tetratricopeptide 92.2 2.8 9.4E-05 31.3 12.0 94 147-250 17-110 (129)
30 2lni_A Stress-induced-phosphop 92.2 1.9 6.5E-05 32.0 10.8 66 176-250 53-118 (133)
31 3edt_B KLC 2, kinesin light ch 92.0 4.9 0.00017 33.8 17.5 145 85-245 96-281 (283)
32 4ga2_A E3 SUMO-protein ligase 91.9 0.85 2.9E-05 36.5 8.9 65 178-251 36-100 (150)
33 2yhc_A BAMD, UPF0169 lipoprote 91.9 5.2 0.00018 33.7 17.0 63 184-250 107-181 (225)
34 2vgx_A Chaperone SYCD; alterna 91.8 2.3 7.8E-05 33.9 11.5 88 147-250 36-123 (148)
35 3ro2_A PINS homolog, G-protein 91.8 2.8 9.4E-05 36.2 12.8 98 147-248 198-295 (338)
36 3sf4_A G-protein-signaling mod 91.7 4 0.00014 36.7 14.3 99 147-249 202-300 (406)
37 3ma5_A Tetratricopeptide repea 91.5 0.75 2.6E-05 34.0 7.7 64 178-250 12-75 (100)
38 3hym_B Cell division cycle pro 91.4 2.5 8.4E-05 36.8 12.2 76 175-251 195-271 (330)
39 2qfc_A PLCR protein; TPR, HTH, 91.3 2.9 0.0001 36.9 12.7 98 147-248 170-269 (293)
40 2kck_A TPR repeat; tetratricop 91.1 2.2 7.6E-05 30.4 9.9 90 147-250 21-111 (112)
41 3q49_B STIP1 homology and U bo 91.1 1 3.5E-05 34.2 8.3 86 147-248 24-109 (137)
42 2xcb_A PCRH, regulatory protei 91.1 2.6 8.9E-05 32.8 10.9 88 147-250 33-120 (142)
43 3u3w_A Transcriptional activat 91.0 2.8 9.5E-05 37.0 12.3 98 147-249 130-229 (293)
44 2dba_A Smooth muscle cell asso 90.9 2.2 7.5E-05 32.4 10.2 91 147-250 43-133 (148)
45 2l6j_A TPR repeat-containing p 90.9 1.9 6.6E-05 31.2 9.4 64 177-249 8-71 (111)
46 3gyz_A Chaperone protein IPGC; 90.8 2.9 9.9E-05 33.9 11.2 90 147-252 51-140 (151)
47 4a1s_A PINS, partner of inscut 90.7 3.2 0.00011 37.8 12.7 99 147-249 238-336 (411)
48 1elw_A TPR1-domain of HOP; HOP 90.7 2.3 7.8E-05 30.6 9.7 88 147-250 19-106 (118)
49 3uq3_A Heat shock protein STI1 90.6 2.9 0.0001 34.8 11.5 103 147-250 53-173 (258)
50 2kc7_A BFR218_protein; tetratr 90.6 1.5 5.1E-05 31.5 8.5 64 179-251 6-70 (99)
51 2xev_A YBGF; tetratricopeptide 90.6 1.3 4.6E-05 33.1 8.5 66 179-250 8-73 (129)
52 1hz4_A MALT regulatory protein 90.5 8.5 0.00029 34.6 15.3 123 148-272 69-191 (373)
53 1na3_A Designed protein CTPR2; 90.4 2.6 8.8E-05 29.2 9.4 65 177-250 13-77 (91)
54 3rkv_A Putative peptidylprolyl 90.2 1.6 5.6E-05 34.7 9.1 69 173-250 63-131 (162)
55 3u3w_A Transcriptional activat 90.0 9.4 0.00032 33.4 15.3 96 148-247 171-268 (293)
56 3ieg_A DNAJ homolog subfamily 89.9 9.3 0.00032 33.3 15.4 92 147-250 249-340 (359)
57 1hh8_A P67PHOX, NCF-2, neutrop 89.9 2 6.8E-05 35.3 9.7 106 147-260 52-165 (213)
58 3as5_A MAMA; tetratricopeptide 89.5 5.3 0.00018 31.1 11.6 87 147-249 57-143 (186)
59 2fo7_A Synthetic consensus TPR 89.3 4.4 0.00015 29.5 10.4 86 147-248 50-135 (136)
60 1elr_A TPR2A-domain of HOP; HO 89.3 1.9 6.4E-05 31.8 8.2 93 147-248 19-111 (131)
61 3gw4_A Uncharacterized protein 89.1 4.9 0.00017 32.3 11.4 97 147-248 41-139 (203)
62 3upv_A Heat shock protein STI1 89.1 3.1 0.00011 31.2 9.6 85 147-247 19-103 (126)
63 3ulq_A Response regulator aspa 89.1 9 0.00031 34.8 14.4 98 147-249 199-297 (383)
64 2kat_A Uncharacterized protein 89.1 1.7 5.9E-05 32.3 8.0 65 176-249 22-86 (115)
65 1xnf_A Lipoprotein NLPI; TPR, 89.0 6.4 0.00022 33.2 12.6 64 178-250 82-145 (275)
66 4b4t_Q 26S proteasome regulato 88.9 2.4 8.4E-05 39.0 10.5 97 147-247 110-206 (434)
67 1elw_A TPR1-domain of HOP; HOP 88.9 3 0.0001 29.9 9.1 65 177-250 8-72 (118)
68 1a17_A Serine/threonine protei 88.8 6.8 0.00023 30.2 12.0 88 147-250 28-115 (166)
69 2kck_A TPR repeat; tetratricop 88.8 2.5 8.7E-05 30.1 8.5 62 178-248 11-72 (112)
70 2ho1_A Type 4 fimbrial biogene 88.7 4.3 0.00015 34.0 11.1 31 218-248 143-173 (252)
71 2lni_A Stress-induced-phosphop 88.5 3.3 0.00011 30.6 9.2 65 177-250 20-84 (133)
72 3q49_B STIP1 homology and U bo 88.5 3.4 0.00012 31.1 9.4 65 177-250 13-77 (137)
73 2vyi_A SGTA protein; chaperone 88.3 5.4 0.00018 29.0 10.3 68 174-250 13-80 (131)
74 2vq2_A PILW, putative fimbrial 88.3 8.5 0.00029 31.1 12.4 90 147-250 57-147 (225)
75 3q15_A PSP28, response regulat 87.7 16 0.00054 33.2 15.6 98 147-249 197-294 (378)
76 2ho1_A Type 4 fimbrial biogene 87.5 9.1 0.00031 31.9 12.4 69 173-250 141-209 (252)
77 4gco_A Protein STI-1; structur 87.5 2.8 9.5E-05 32.4 8.4 64 178-251 18-82 (126)
78 1na0_A Designed protein CTPR3; 87.5 6.4 0.00022 28.3 12.0 88 147-250 24-111 (125)
79 2y4t_A DNAJ homolog subfamily 87.1 18 0.00061 33.1 16.0 92 147-250 272-363 (450)
80 3sz7_A HSC70 cochaperone (SGT) 87.0 3.9 0.00013 32.4 9.3 65 177-250 15-79 (164)
81 4i17_A Hypothetical protein; T 87.0 1.4 4.8E-05 36.9 6.9 71 176-248 79-149 (228)
82 2xpi_A Anaphase-promoting comp 87.0 3.2 0.00011 40.0 10.2 94 148-250 491-584 (597)
83 2xcb_A PCRH, regulatory protei 86.8 4.5 0.00015 31.4 9.4 65 178-251 23-87 (142)
84 3u4t_A TPR repeat-containing p 86.7 9 0.00031 32.3 12.1 91 147-250 18-108 (272)
85 2qfc_A PLCR protein; TPR, HTH, 86.1 4.1 0.00014 35.9 9.8 96 147-247 130-227 (293)
86 1ihg_A Cyclophilin 40; ppiase 86.0 16 0.00053 34.0 14.2 72 170-250 270-341 (370)
87 2vq2_A PILW, putative fimbrial 85.9 5.6 0.00019 32.2 10.0 59 177-244 46-105 (225)
88 2q7f_A YRRB protein; TPR, prot 85.9 10 0.00034 31.2 11.7 88 147-250 106-193 (243)
89 3upv_A Heat shock protein STI1 85.5 6 0.00021 29.6 9.3 64 178-250 9-72 (126)
90 4i17_A Hypothetical protein; T 85.5 13 0.00043 30.8 12.2 88 147-250 22-110 (228)
91 2dba_A Smooth muscle cell asso 85.4 5.9 0.0002 29.8 9.3 69 175-249 30-98 (148)
92 2vgx_A Chaperone SYCD; alterna 85.3 6.5 0.00022 31.1 9.8 67 176-251 24-90 (148)
93 3uq3_A Heat shock protein STI1 85.3 13 0.00044 30.7 12.1 67 175-250 141-207 (258)
94 1hxi_A PEX5, peroxisome target 85.2 4.4 0.00015 30.9 8.4 63 179-250 23-85 (121)
95 2xpi_A Anaphase-promoting comp 85.2 18 0.0006 34.6 14.6 95 147-250 456-550 (597)
96 1elr_A TPR2A-domain of HOP; HO 85.2 8.8 0.0003 27.9 10.0 64 177-249 8-71 (131)
97 1p5q_A FKBP52, FK506-binding p 85.1 7.8 0.00027 35.3 11.4 95 147-250 162-264 (336)
98 2e2e_A Formate-dependent nitri 84.9 7.9 0.00027 30.8 10.3 88 147-250 59-149 (177)
99 4abn_A Tetratricopeptide repea 84.9 9.3 0.00032 36.6 12.4 96 146-250 193-292 (474)
100 1na0_A Designed protein CTPR3; 84.8 7.9 0.00027 27.8 9.4 65 177-250 13-77 (125)
101 3as5_A MAMA; tetratricopeptide 84.8 6 0.0002 30.8 9.3 66 176-250 45-110 (186)
102 2fo7_A Synthetic consensus TPR 84.7 9.3 0.00032 27.6 11.8 87 147-249 16-102 (136)
103 3urz_A Uncharacterized protein 84.5 5.5 0.00019 33.3 9.4 67 176-251 57-123 (208)
104 2q7f_A YRRB protein; TPR, prot 84.5 14 0.00049 30.2 12.1 88 147-250 72-159 (243)
105 3qky_A Outer membrane assembly 84.4 2.7 9.2E-05 36.1 7.5 67 178-250 20-86 (261)
106 3hym_B Cell division cycle pro 84.4 3.8 0.00013 35.6 8.6 94 148-250 209-304 (330)
107 1kt0_A FKBP51, 51 kDa FK506-bi 84.2 9.9 0.00034 36.3 12.2 95 147-250 283-385 (457)
108 3mv2_B Coatomer subunit epsilo 84.0 1.6 5.4E-05 40.6 6.1 115 147-275 115-231 (310)
109 1a17_A Serine/threonine protei 84.0 7.5 0.00026 29.9 9.5 66 176-250 16-81 (166)
110 3u4t_A TPR repeat-containing p 83.9 3.7 0.00013 34.8 8.2 71 178-251 181-256 (272)
111 3gyz_A Chaperone protein IPGC; 83.8 7 0.00024 31.5 9.4 65 178-251 41-105 (151)
112 3qww_A SET and MYND domain-con 83.5 14 0.0005 35.4 13.0 95 147-245 313-411 (433)
113 3vtx_A MAMA; tetratricopeptide 83.4 1.7 5.9E-05 34.9 5.5 37 214-250 3-39 (184)
114 4gcn_A Protein STI-1; structur 83.2 4 0.00014 31.4 7.4 63 178-250 13-76 (127)
115 1fch_A Peroxisomal targeting s 83.1 11 0.00036 33.4 11.2 30 218-247 287-316 (368)
116 1qqe_A Vesicular transport pro 83.0 9.5 0.00033 33.6 10.8 101 147-250 133-233 (292)
117 3vtx_A MAMA; tetratricopeptide 82.9 2.5 8.5E-05 33.9 6.3 64 177-249 111-174 (184)
118 1fch_A Peroxisomal targeting s 82.8 14 0.00048 32.6 12.0 89 148-250 197-285 (368)
119 3cv0_A Peroxisome targeting si 82.6 16 0.00053 31.5 11.9 89 146-250 152-240 (327)
120 4ga2_A E3 SUMO-protein ligase 82.4 1.9 6.6E-05 34.3 5.3 39 213-251 28-66 (150)
121 4eqf_A PEX5-related protein; a 82.3 26 0.0009 31.0 15.0 86 148-249 229-314 (365)
122 3n71_A Histone lysine methyltr 82.0 16 0.00056 35.7 12.9 95 147-245 324-422 (490)
123 2fbn_A 70 kDa peptidylprolyl i 81.6 14 0.00048 30.0 10.7 75 175-250 40-122 (198)
124 1hh8_A P67PHOX, NCF-2, neutrop 81.4 4.6 0.00016 33.0 7.6 67 175-250 39-105 (213)
125 2v5f_A Prolyl 4-hydroxylase su 81.3 7.1 0.00024 29.1 8.0 75 178-255 10-87 (104)
126 2ifu_A Gamma-SNAP; membrane fu 81.0 7.9 0.00027 34.4 9.5 99 147-250 130-228 (307)
127 3ieg_A DNAJ homolog subfamily 80.4 20 0.00069 31.1 11.9 67 179-250 240-306 (359)
128 4gcn_A Protein STI-1; structur 80.0 9.3 0.00032 29.2 8.5 92 147-248 23-115 (127)
129 3ma5_A Tetratricopeptide repea 79.9 3.9 0.00013 29.9 5.9 37 215-251 6-42 (100)
130 1na3_A Designed protein CTPR2; 79.6 3.8 0.00013 28.3 5.6 37 214-250 7-43 (91)
131 3fp2_A TPR repeat-containing p 78.8 13 0.00044 34.9 10.7 61 178-248 248-308 (537)
132 2v5f_A Prolyl 4-hydroxylase su 78.7 2 6.9E-05 32.2 4.0 55 218-272 7-63 (104)
133 3cv0_A Peroxisome targeting si 78.1 21 0.0007 30.7 11.1 86 148-249 188-273 (327)
134 1wao_1 Serine/threonine protei 78.1 22 0.00077 34.1 12.3 89 146-250 20-108 (477)
135 1p5q_A FKBP52, FK506-binding p 77.5 15 0.00052 33.3 10.5 77 173-250 147-230 (336)
136 4eqf_A PEX5-related protein; a 77.2 11 0.00038 33.6 9.3 91 146-250 191-281 (365)
137 1hxi_A PEX5, peroxisome target 76.7 11 0.00037 28.6 7.9 87 147-249 32-118 (121)
138 3qwp_A SET and MYND domain-con 76.2 27 0.00093 33.3 12.2 75 167-245 323-400 (429)
139 1xnf_A Lipoprotein NLPI; TPR, 76.0 9 0.00031 32.2 7.9 64 178-251 116-179 (275)
140 2y4t_A DNAJ homolog subfamily 75.4 13 0.00044 34.0 9.4 64 177-249 30-93 (450)
141 3k9i_A BH0479 protein; putativ 75.1 4.9 0.00017 30.0 5.4 38 213-250 24-61 (117)
142 2pl2_A Hypothetical conserved 74.4 29 0.001 28.8 10.8 87 147-250 99-185 (217)
143 2pl2_A Hypothetical conserved 74.1 19 0.00066 30.0 9.5 64 178-250 10-73 (217)
144 1w3b_A UDP-N-acetylglucosamine 73.9 30 0.001 31.0 11.5 62 179-249 39-100 (388)
145 3mkr_A Coatomer subunit epsilo 73.5 29 0.001 30.6 11.0 93 173-279 166-260 (291)
146 2yhc_A BAMD, UPF0169 lipoprote 73.5 38 0.0013 28.1 16.7 65 178-249 152-217 (225)
147 2gw1_A Mitochondrial precursor 73.3 20 0.00068 33.2 10.3 72 176-250 375-449 (514)
148 2e2e_A Formate-dependent nitri 72.8 18 0.00061 28.6 8.6 65 177-250 48-115 (177)
149 3rkv_A Putative peptidylprolyl 72.7 13 0.00043 29.2 7.6 75 177-251 15-98 (162)
150 2gw1_A Mitochondrial precursor 72.6 18 0.00061 33.5 9.7 64 174-247 238-301 (514)
151 2c2l_A CHIP, carboxy terminus 72.4 7.9 0.00027 34.2 6.8 87 147-249 19-105 (281)
152 4g1t_A Interferon-induced prot 71.8 12 0.00041 34.6 8.3 103 147-250 66-172 (472)
153 1hz4_A MALT regulatory protein 71.0 35 0.0012 30.4 11.1 98 147-248 108-206 (373)
154 1pc2_A Mitochondria fission pr 70.9 3.8 0.00013 34.1 4.0 36 214-249 69-104 (152)
155 3urz_A Uncharacterized protein 69.4 16 0.00054 30.3 7.8 61 181-250 12-88 (208)
156 2l6j_A TPR repeat-containing p 69.2 9.6 0.00033 27.2 5.7 35 216-250 4-38 (111)
157 1w3b_A UDP-N-acetylglucosamine 68.4 24 0.00081 31.7 9.3 66 176-250 240-305 (388)
158 4abn_A Tetratricopeptide repea 68.4 50 0.0017 31.4 12.1 78 159-248 91-169 (474)
159 2kat_A Uncharacterized protein 67.3 11 0.00036 27.7 5.7 35 216-250 19-53 (115)
160 2if4_A ATFKBP42; FKBP-like, al 67.1 6.7 0.00023 35.8 5.3 66 176-250 233-298 (338)
161 2pzi_A Probable serine/threoni 65.3 20 0.00068 36.2 8.9 65 178-251 438-502 (681)
162 2vsy_A XCC0866; transferase, g 65.1 52 0.0018 31.7 11.6 31 218-248 93-123 (568)
163 3ax2_A Mitochondrial import re 64.5 6 0.0002 28.8 3.4 29 222-250 23-51 (73)
164 1kt0_A FKBP51, 51 kDa FK506-bi 64.5 32 0.0011 32.7 9.8 78 173-251 268-352 (457)
165 2c2l_A CHIP, carboxy terminus 61.8 28 0.00096 30.5 8.3 64 178-250 9-72 (281)
166 2vsy_A XCC0866; transferase, g 59.4 41 0.0014 32.4 9.7 66 176-250 26-91 (568)
167 3bee_A Putative YFRE protein; 59.3 6.6 0.00022 29.1 3.0 34 215-248 42-75 (93)
168 3ffl_A Anaphase-promoting comp 57.7 13 0.00044 31.3 4.9 40 208-247 55-94 (167)
169 2h6f_A Protein farnesyltransfe 56.4 42 0.0014 31.3 8.8 34 217-250 167-200 (382)
170 4gyw_A UDP-N-acetylglucosamine 56.3 38 0.0013 34.8 9.1 65 176-250 12-77 (723)
171 4gyw_A UDP-N-acetylglucosamine 55.6 88 0.003 32.0 11.8 62 178-249 82-144 (723)
172 1om2_A Protein (mitochondrial 53.1 11 0.00036 28.9 3.2 39 211-249 10-53 (95)
173 3fp2_A TPR repeat-containing p 53.1 1.4E+02 0.0048 27.5 17.8 66 176-250 313-378 (537)
174 4h7y_A Dual specificity protei 51.7 90 0.0031 26.0 8.9 96 146-250 33-128 (161)
175 2kc7_A BFR218_protein; tetratr 50.1 29 0.001 24.2 5.3 32 219-250 3-34 (99)
176 1nzn_A CGI-135 protein, fissio 47.9 18 0.00061 29.0 4.0 37 213-249 71-107 (126)
177 2h6f_A Protein farnesyltransfe 45.5 71 0.0024 29.7 8.5 72 177-257 170-243 (382)
178 1ihg_A Cyclophilin 40; ppiase 45.1 87 0.003 28.7 9.0 74 176-250 226-307 (370)
179 1ouv_A Conserved hypothetical 44.9 64 0.0022 27.1 7.6 56 179-245 12-71 (273)
180 3mkr_A Coatomer subunit epsilo 43.5 87 0.003 27.4 8.4 58 178-249 106-163 (291)
181 1wao_1 Serine/threonine protei 43.4 44 0.0015 32.0 6.8 60 182-250 15-74 (477)
182 3fbl_A Putative uncharacterize 43.0 17 0.00057 25.6 2.7 28 160-187 10-40 (82)
183 2r5s_A Uncharacterized protein 41.0 39 0.0013 26.7 5.2 34 216-249 108-141 (176)
184 2r5s_A Uncharacterized protein 39.6 91 0.0031 24.4 7.3 61 178-245 113-173 (176)
185 3c18_A Nucleotidyltransferase- 38.2 40 0.0014 30.9 5.2 46 220-280 134-180 (290)
186 4g1t_A Interferon-induced prot 37.7 27 0.00091 32.2 4.1 68 177-247 55-125 (472)
187 3o48_A Mitochondria fission 1 36.7 29 0.00099 28.1 3.6 38 213-250 75-112 (134)
188 1ouv_A Conserved hypothetical 33.2 1.3E+02 0.0044 25.1 7.7 81 147-247 129-217 (273)
189 2kxw_B Sodium channel protein 31.7 28 0.00097 20.2 2.0 17 147-163 4-20 (27)
190 2if4_A ATFKBP42; FKBP-like, al 31.3 58 0.002 29.3 5.3 73 176-250 182-264 (338)
191 2hr2_A Hypothetical protein; a 29.5 1E+02 0.0035 25.3 6.0 34 215-248 10-43 (159)
192 4g26_A Pentatricopeptide repea 29.0 3.9E+02 0.013 25.6 11.9 118 146-309 84-203 (501)
193 2ond_A Cleavage stimulation fa 28.8 2.8E+02 0.0095 23.8 11.1 68 177-249 207-274 (308)
194 3rjv_A Putative SEL1 repeat pr 27.0 48 0.0016 27.4 3.6 27 219-245 21-47 (212)
195 3qou_A Protein YBBN; thioredox 26.8 75 0.0026 27.6 5.0 62 178-248 122-183 (287)
196 3n71_A Histone lysine methyltr 26.6 2.7E+02 0.0091 26.9 9.4 137 86-245 321-464 (490)
197 2pzi_A Probable serine/threoni 26.4 2.4E+02 0.0082 28.1 9.3 62 179-250 473-534 (681)
198 4f3v_A ESX-1 secretion system 26.0 1.4E+02 0.0047 26.9 6.7 57 182-245 144-200 (282)
199 2hr2_A Hypothetical protein; a 25.6 2.5E+02 0.0084 22.9 7.7 75 171-245 9-86 (159)
200 1y8m_A FIS1; mitochondria, unk 25.6 77 0.0026 25.9 4.4 36 214-249 75-110 (144)
201 3qou_A Protein YBBN; thioredox 24.1 1.1E+02 0.0038 26.5 5.6 35 215-249 218-252 (287)
202 2l53_B CAM, voltage-gated sodi 23.7 47 0.0016 19.9 2.0 17 147-163 4-20 (31)
203 1klx_A Cysteine rich protein B 23.0 47 0.0016 25.6 2.6 59 181-250 65-131 (138)
204 3txn_A 26S proteasome regulato 22.4 3E+02 0.01 25.9 8.6 90 149-244 76-167 (394)
205 2ond_A Cleavage stimulation fa 21.3 3.9E+02 0.013 22.9 11.6 61 178-249 139-202 (308)
206 1zu2_A Mitochondrial import re 21.0 58 0.002 26.8 2.8 33 218-250 82-125 (158)
207 1klx_A Cysteine rich protein B 20.6 1E+02 0.0036 23.5 4.2 31 217-247 58-92 (138)
208 3rjv_A Putative SEL1 repeat pr 20.1 1.6E+02 0.0055 24.0 5.6 83 147-245 68-158 (212)
209 4b4t_P 26S proteasome regulato 20.0 2.3E+02 0.008 26.8 7.4 66 175-243 139-204 (445)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-63 Score=493.48 Aligned_cols=309 Identities=18% Similarity=0.226 Sum_probs=277.2
Q ss_pred hHHHHHHHHHHHHHHhcCChHHHhccccCcCCCCc--hhhHHhhhh--hhhhHHHHhhhc---CCCCChHHHHHHHHHHh
Q 020262 10 HRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS--LLSLADSLN--VFQDANRLIKQS---DNYSPFADITVPLFRSL 82 (328)
Q Consensus 10 ~~~l~~yl~~v~~ai~~~dg~~La~lls~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~iv~~~l~~~ 82 (328)
|..+++|+.+|.+ |. ..+|+++|+.|. ...+++.+. .+.++++.|++. .+|.+|.++|.+|++++
T Consensus 1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~ 72 (455)
T 3t5v_B 1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA 72 (455)
T ss_dssp -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 5678999999998 33 999999998763 445554432 234677777765 56788899999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcccCCcee---hHHHHHHHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHH
Q 020262 83 QHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWA---LEALYVIAYEIRVLAERADRELASNG-KSPEKLKAAGSFLMKV 158 (328)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~---lp~L~~~~~~l~~la~~~D~~~~~~~-~~~~~le~~a~~l~~~ 158 (328)
+++++|++.++|+.+.+++++++++|.+++.+|+ +|+++.+++.++.+|.++|++....+ .+.+++|+||++|+|+
T Consensus 73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~ 152 (455)
T 3t5v_B 73 RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRL 152 (455)
T ss_dssp HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999998778998 88888899999999999999884433 4468999999999999
Q ss_pred HHhhhCCC------C---chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccchhhhhhhhhHHhhh
Q 020262 159 FGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVF 228 (328)
Q Consensus 159 f~~~~~D~------s---Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~-~p~~~~~~~~~~v~y~YY~Gr~~~~ 228 (328)
|+.|++|+ | ||+|++|++|+|||+|||+|+++||+|++++++++. +|+++.+|++|+|||+||+||++++
T Consensus 153 F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~ 232 (455)
T 3t5v_B 153 FNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL 232 (455)
T ss_dssp HHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH
Confidence 99999983 3 999999999999999999999999999999999875 4688999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHh-cCcC-----chHHHHHHHHHHHHHHhhcCCCCChHhhccc---Cccc-cHHHHHHHhhCCHH
Q 020262 229 NENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEKY---NLVE-YSNIVQALRRGDLR 298 (328)
Q Consensus 229 ~~~~~~A~~~L~~A~~~-c~~~-----~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~---~l~~-y~~l~~avk~Gnl~ 298 (328)
+++|.+|+++|++||++ ||.+ +.+|+++||+||||++|++|++|++++|+++ .+.+ |.+|++|||+||+.
T Consensus 233 ~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~ 312 (455)
T 3t5v_B 233 NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQ 312 (455)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999 9987 4799999999999999999999999999994 4666 99999999999999
Q ss_pred HHHHHHHHhHHHHHH-hH-HHHHHhhhhhc
Q 020262 299 LLRHALEEHEDQYVL-FI-YFTLGSLQLSI 326 (328)
Q Consensus 299 ~f~~~l~~~~~~f~k-gl-ylllerlr~~v 326 (328)
+|++++++|+.+|++ |+ |+++||||++|
T Consensus 313 ~F~~~L~~~~~~f~~~gily~LlerLr~~v 342 (455)
T 3t5v_B 313 GVSLWLRQNERHLCARQLLIVLLEKLPMVT 342 (455)
T ss_dssp HHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999 99 99999999986
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=257.05 Aligned_cols=119 Identities=37% Similarity=0.730 Sum_probs=114.6
Q ss_pred CCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHH
Q 020262 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSN 287 (328)
Q Consensus 208 ~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l~~y~~ 287 (328)
+.||++|+|||+||+||++++++||.+|+++|++||++||+++.+|+++||+||||++|++|++|+++++++|++.+|.+
T Consensus 6 ~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~y~~ 85 (203)
T 3t5x_A 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAE 85 (203)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGGGHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHhHHHHHH-hHHHHHHhhhhhc
Q 020262 288 IVQALRRGDLRLLRHALEEHEDQYVL-FIYFTLGSLQLSI 326 (328)
Q Consensus 288 l~~avk~Gnl~~f~~~l~~~~~~f~k-glylllerlr~~v 326 (328)
|++|||+||+.+|++++++|+++|++ |+|++++|+|++|
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v 125 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIIT 125 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999987
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.9e-29 Score=247.10 Aligned_cols=169 Identities=15% Similarity=0.260 Sum_probs=150.4
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhc
Q 020262 152 GSFLMKVFGVLA-GKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNE 230 (328)
Q Consensus 152 a~~l~~~f~~~~-~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~ 230 (328)
-..++...+.+. ..+ -.+.-.+.|+++|.|.+.+.+++|.++++... +|. ...+.+|+++|+||.||++++++
T Consensus 211 r~~Ll~~~rta~lr~D--~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~-~~~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 211 RSTMMKFLKIASLKHD--NETKAMLINLILRDFLNNGEVDSASDFISKLE---YPH-TDVSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp HTHHHHHHHHCCSCSS--SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCT-TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccC--cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCc-ccCCHHHHHHHHHHHHHHHHHhc
Confidence 346666666643 211 25667799999999999999999999999775 664 34789999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCCCChHhhcccCc----cccHHHHHHHhhCCHHHHHHHH
Q 020262 231 NFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILPKDWLLEKYNL----VEYSNIVQALRRGDLRLLRHAL 304 (328)
Q Consensus 231 ~~~~A~~~L~~A~~~c~~~~--~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l----~~y~~l~~avk~Gnl~~f~~~l 304 (328)
+|.+|+++|++|+++||+++ .++++.|++|+|||+|++|.+|++.++.++++ .+|.+|++|||.||+.+|++++
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L 364 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTI 364 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999774 58999999999999999999999999999985 5799999999999999999999
Q ss_pred HHhHHHHHH-hHHHHHHhhhhhc
Q 020262 305 EEHEDQYVL-FIYFTLGSLQLSI 326 (328)
Q Consensus 305 ~~~~~~f~k-glylllerlr~~v 326 (328)
++|+.+|++ |+|.+++|||..|
T Consensus 365 ~~h~~~F~~Dgty~LI~rLr~~v 387 (523)
T 4b4t_S 365 TKYKQLLLKDDTYQLCVRLRSNV 387 (523)
T ss_dssp HHTHHHHHHTTCTHHHHHHHHHH
T ss_pred HHhcceeccCChhHHHHHHHHHH
Confidence 999999999 9999999999887
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.73 E-value=9.3e-07 Score=85.96 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=144.7
Q ss_pred HHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHH---------HHHhCCCChhHHHHHHHHHHHHHHhhhCCCCch
Q 020262 99 KSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADR---------ELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKR 169 (328)
Q Consensus 99 ~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~---------~~~~~~~~~~~le~~a~~l~~~f~~~~~D~sKk 169 (328)
++|+.++..|...+.. ....+.+|.+.+.+|..-++ .+..-=-......+|...+.+.-+-|..-+ .+
T Consensus 59 k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~ 135 (394)
T 3txn_A 59 KLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLD-DK 135 (394)
T ss_dssp HHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CT
T ss_pred HHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cc
Confidence 4556666666543211 36666667666666642110 000000001245566677777777776522 24
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC--CCCCCCCCccchhhhhhhhhHHhh-hhcChHHHHHHHHHHHHhc
Q 020262 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR--IFDFEEFPKRDKVTYMYYTGRLEV-FNENFPAADQKLSYALINC 246 (328)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~--~p~~~~~~~~~~v~y~YY~Gr~~~-~~~~~~~A~~~L~~A~~~c 246 (328)
.-++-+--+..++|+.++|+.-++..+..-.... ++ .|..-+..++.+.|++++ .+.+|.+|...|-.||...
T Consensus 136 ~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~----~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 136 NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY----CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC----CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 6666677788999999999999998887554321 21 356778999999999999 9999999999999999887
Q ss_pred CcCchHHHHHHHHHHHHHHhhcCCCCChHh-hc-----cc---CccccHHHHHHHhhCCHHHHHHHHHHhHHHHHH
Q 020262 247 NPQSEANIRMILKYLIPVKLSIGILPKDWL-LE-----KY---NLVEYSNIVQALRRGDLRLLRHALEEHEDQYVL 313 (328)
Q Consensus 247 ~~~~~~n~~~IL~~LIpv~LllG~~P~~~l-l~-----~~---~l~~y~~l~~avk~Gnl~~f~~~l~~~~~~f~k 313 (328)
.......+..+++|++-++|+++..|...- +. +| .+..+..++.|.+.||+..|.+.+++++..|..
T Consensus 212 ~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~ 287 (394)
T 3txn_A 212 DSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAE 287 (394)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTT
T ss_pred cccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 655556778899999999999998666532 21 12 233478899999999999999999998765444
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.1e-06 Score=83.33 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+.+++-..+.+.|++.|..+.|+++++.+++. +...+..+..-...|++..|.++..+++|.+++.+.-.++..++..
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~-l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~ 202 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKT-LDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS 202 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-HHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-hhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 678889999999999999999999999988753 2112223333334444446777889999999999999999877633
Q ss_pred --chHHHHHHHHHHHHHHhhcC-CCCCh-HhhcccCc---------cccHHHHHHHhhCCHHHHHHHHHHhHHH--HHH-
Q 020262 250 --SEANIRMILKYLIPVKLSIG-ILPKD-WLLEKYNL---------VEYSNIVQALRRGDLRLLRHALEEHEDQ--YVL- 313 (328)
Q Consensus 250 --~~~n~~~IL~~LIpv~LllG-~~P~~-~ll~~~~l---------~~y~~l~~avk~Gnl~~f~~~l~~~~~~--f~k- 313 (328)
.....+.-+.+.+.+..++| .+|.+ +++..+.+ ..+.++.++...||+..|++.++.|... ++.
T Consensus 203 ~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~ 282 (393)
T 4b4t_O 203 TSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ 282 (393)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh
Confidence 24555666677666777764 45555 56665532 2368899999999999999988777553 455
Q ss_pred hHHHHHHhhhhh
Q 020262 314 FIYFTLGSLQLS 325 (328)
Q Consensus 314 glylllerlr~~ 325 (328)
+.-.+++|+|.+
T Consensus 283 ~~~~l~~kirll 294 (393)
T 4b4t_O 283 HESFLRQKICLM 294 (393)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 555566666543
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.4e-05 Score=75.95 Aligned_cols=161 Identities=12% Similarity=0.074 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
...+|+++|...-.-+.+-.+ +.--.-+.....|+|+..+++.-++.+++.+....+.. .-+..-+..|+.|.|+++
T Consensus 152 ~~~eA~~iL~~l~~Et~~~~~-~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~ 228 (445)
T 4b4t_P 152 KIDEAADILCELQVETYGSME-MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKIS 228 (445)
T ss_dssp CHHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHH
Confidence 456777777777655543222 33344455689999999999999999999886432211 235567899999999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC-chHHHHHHHHHHHHHHhhcCCCCChH-hhccc-------CccccHHHHHHHhhCCH
Q 020262 227 VFNENFPAADQKLSYALINCNPQ-SEANIRMILKYLIPVKLSIGILPKDW-LLEKY-------NLVEYSNIVQALRRGDL 297 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~-~~~n~~~IL~~LIpv~LllG~~P~~~-ll~~~-------~l~~y~~l~~avk~Gnl 297 (328)
+.+.+|.+|..++..+|...... ....+...|.+.|-+.++.+.-|..+ ++.+. .+..|..+.++..++++
T Consensus 229 ~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L 308 (445)
T 4b4t_P 229 LHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308 (445)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence 99999999999999999876543 34567778888888888887777654 34332 13458999999999999
Q ss_pred HHHHHHHHHhHHH
Q 020262 298 RLLRHALEEHEDQ 310 (328)
Q Consensus 298 ~~f~~~l~~~~~~ 310 (328)
..|...++.++..
T Consensus 309 ~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 309 MRWPIVQKTYEPV 321 (445)
T ss_dssp SSHHHHHHHTCSS
T ss_pred hhhHHHHHHHHHH
Confidence 9999999987653
No 7
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.63 E-value=0.00011 Score=66.23 Aligned_cols=127 Identities=9% Similarity=0.056 Sum_probs=98.7
Q ss_pred HHHHHhcCChhhHHHHHHHhhc-----cCCCCCCCCCcc--chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc--
Q 020262 180 FKIYFKLGTVHLCRSVIRSIET-----ARIFDFEEFPKR--DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS-- 250 (328)
Q Consensus 180 ~kiYfkl~~~~l~~~lik~i~~-----~~~p~~~~~~~~--~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-- 250 (328)
++.++.-++++.|.++++.+.- ..+|+ ..++. +..++-|+.|.+..++.+..+|++....+++.-|.+.
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p--~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~ 91 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVP--TSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLV 91 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSC--CSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCC
Confidence 5677888999999999998752 22443 22333 3679999999999999999999999999999887653
Q ss_pred -hHHHHHHHHHHHHHHhhcCCCCChHhh-ccc---C-------ccccHHHHHHHhhCCHHHHHHHHHHhH
Q 020262 251 -EANIRMILKYLIPVKLSIGILPKDWLL-EKY---N-------LVEYSNIVQALRRGDLRLLRHALEEHE 308 (328)
Q Consensus 251 -~~n~~~IL~~LIpv~LllG~~P~~~ll-~~~---~-------l~~y~~l~~avk~Gnl~~f~~~l~~~~ 308 (328)
..|+..++.|-|-.-|.+|.+|..... +.- . +.....+.+|+..||+.+|-+..++..
T Consensus 92 ~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p 161 (229)
T 4b0z_A 92 PSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN 161 (229)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc
Confidence 358888999888888889999886543 221 1 123588999999999999999988753
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0036 Score=58.70 Aligned_cols=164 Identities=14% Similarity=0.187 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.+....+.... .+....-+.+.+.++|..+|++..++.+++...... +.. .-|...+.+++.+.|+++
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA-NSI-YCPTQTVAELDLMSGILH 226 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHS-CCCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh-hcC-CCchHHHHHHHHHHHHHH
Confidence 45677778888877766532 345666778899999999999999999987654321 111 124566789999999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC----chHHHHHHHHHHHHHHhhcCCCCCh-Hhhcc------cC---ccccHHHHHHH
Q 020262 227 VFNENFPAADQKLSYALINCNPQ----SEANIRMILKYLIPVKLSIGILPKD-WLLEK------YN---LVEYSNIVQAL 292 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~----~~~n~~~IL~~LIpv~LllG~~P~~-~ll~~------~~---l~~y~~l~~av 292 (328)
..+++|.+|..++..|+...+.. ........+.+.+.+.++.+..+.. ..+.. .. ...+..+..+.
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAY 306 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 99999999999999999876532 2234445566666666665433222 11111 11 12478899999
Q ss_pred hhCCHHHHHHHHHHhHHHHHH
Q 020262 293 RRGDLRLLRHALEEHEDQYVL 313 (328)
Q Consensus 293 k~Gnl~~f~~~l~~~~~~f~k 313 (328)
..+++..|.+.++.+...+..
T Consensus 307 ~~~~l~~~~~~~~~~~~~~~~ 327 (434)
T 4b4t_Q 307 NNRSLLDFNTALKQYEKELMG 327 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHTC
T ss_pred HhhhHHHHHHHHHHHHHHHcc
Confidence 999999999999998765544
No 9
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.02 Score=55.71 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh
Q 020262 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF 228 (328)
Q Consensus 149 e~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~ 228 (328)
+.|.+.+.++...|.+++ .+..+ .-.++++|+..+++..++..++.+++... +.-....+.+++.|.|++++.
T Consensus 148 ~~A~~~~~~~~~~~~~~~-~kid~---~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~~~~lk~~~gl~~l~ 220 (429)
T 4b4t_R 148 DNAEKTLGKSLSKAISTG-AKIDV---MLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWERRNRYKTYYGIHCLA 220 (429)
T ss_dssp TTHHHHHHHHHHHHTCCC-SHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCChH-HHHHH---HHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHH
Confidence 346677888777787763 33333 33678999999999999999998875411 112345567999999999999
Q ss_pred hcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC--------hHhhcccC----ccccHHHHHHHhhCC
Q 020262 229 NENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK--------DWLLEKYN----LVEYSNIVQALRRGD 296 (328)
Q Consensus 229 ~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~--------~~ll~~~~----l~~y~~l~~avk~Gn 296 (328)
..+|.+|..+|-.++........-....+++|.+.+.++....+. .....-.. +..+..++.+.-.++
T Consensus 221 ~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~ 300 (429)
T 4b4t_R 221 VRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASD 300 (429)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTC
T ss_pred hChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhcc
Confidence 999999999999999987766666677788888888888643221 11111111 123455678888899
Q ss_pred HHHHHHHHH
Q 020262 297 LRLLRHALE 305 (328)
Q Consensus 297 l~~f~~~l~ 305 (328)
+..|-+.+.
T Consensus 301 ~~~~~~~~l 309 (429)
T 4b4t_R 301 YASYFPYLL 309 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 10
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.21 E-value=0.82 Score=40.76 Aligned_cols=216 Identities=11% Similarity=-0.007 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 020262 71 FADITVPLFRSLQHY-RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLK 149 (328)
Q Consensus 71 ~~~iv~~~l~~~~~~-~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le 149 (328)
|++.+..|-+....+ ..+++.+|.+.+.+.+....+. + +.. ..+..+..++..... . ...+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~-------~~a~~~~~lg~~~~~----~----g~~~ 94 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-G--NED-------EAGNTYVEAYKCFKS----G----GNSV 94 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-T--CHH-------HHHHHHHHHHHHHHH----T----TCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C--CHH-------HHHHHHHHHHHHHHH----C----CCHH
Confidence 666666666665443 3577888888877766543321 1 110 112222233322211 1 1345
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 150 AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 150 ~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl-~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
+|...+.++....... ....+.....+.+-.+|.+. |+++.+-..++ +++-. |. .-........+.-+|.++.
T Consensus 95 ~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~--~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQ--DQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--Hh--CCChHHHHHHHHHHHHHHH
Confidence 5555555555544322 12344455566778899995 99999877665 44321 21 1112233456777899999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCchH--HHHHHHHHHHHHHhhcCCCCChH-hhccc-----Cc------cccHHHHHHHh
Q 020262 228 FNENFPAADQKLSYALINCNPQSEA--NIRMILKYLIPVKLSIGILPKDW-LLEKY-----NL------VEYSNIVQALR 293 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~--n~~~IL~~LIpv~LllG~~P~~~-ll~~~-----~l------~~y~~l~~avk 293 (328)
-.++|.+|.++++.|+..+|..... .....+.-+.-+.+-+|++.... .+++. .. ..+..+..+..
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999866421 22223333344445567665432 23332 11 11456778888
Q ss_pred hCCHHHHHHHHHHhHH
Q 020262 294 RGDLRLLRHALEEHED 309 (328)
Q Consensus 294 ~Gnl~~f~~~l~~~~~ 309 (328)
.||...|+++++.++.
T Consensus 250 ~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDN 265 (292)
T ss_dssp TTCTTTHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcc
Confidence 9999999999998853
No 11
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=94.93 E-value=0.84 Score=37.10 Aligned_cols=99 Identities=14% Similarity=0.023 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|.+.+.++...+...+..........+.+-.+|.+.|+++-+...+... +... . .-.....+.-++.+|.+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ--Q--ADDQVAIACAFRGLGDL 156 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--h--ccchHHHHHHHHHHHHH
Confidence 45566667777766654322234466667778889999999999998777643 2211 1 11223445567889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcC
Q 020262 226 EVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
+...+++.+|.+++..|+..+...
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999887643
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.67 E-value=1.1 Score=38.67 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=89.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 020262 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (328)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (328)
...+++.+|...+.+.+....+.+.. +....... +..+|... . .. ...++|...+.++...+..
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~-------~~~la~~~---~-~~----~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGK-DHPDVAKQ-------LNNLALLC---Q-NQ----GKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHH-------HHHHHHHH---H-TT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCC-CChHHHHH-------HHHHHHHH---H-Hc----CCHHHHHHHHHHHHHHHHH
Confidence 34578888988888877766655443 21111111 11222111 1 11 2456666667776665432
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC----CCC---------------------------------
Q 020262 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR----IFD--------------------------------- 206 (328)
Q Consensus 165 D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~----~p~--------------------------------- 206 (328)
. +..........+.+-.+|.+.|+++-+...++..-... ++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 11134445566778899999999999988876443210 000
Q ss_pred -CCC--CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 207 -FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 207 -~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
+.. -...+....++.+|.++...+++.+|.+++..|+...|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 000 023556778899999999999999999999999988664
No 13
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.67 E-value=1.2 Score=38.49 Aligned_cols=147 Identities=10% Similarity=-0.048 Sum_probs=88.8
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 020262 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (328)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (328)
...+++.+|...+.+.+...-+.+.. +......... .+|... . . ....++|...+.++...+..
T Consensus 80 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~-------~l~~~~---~-~----~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 80 RDQNKYKDAANLLNDALAIREKTLGK-DHPAVAATLN-------NLAVLY---G-K----RGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH-------HHHHHH---H-T----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHH-------HHHHHH---H-H----cCcHHHHHHHHHHHHHHHHH
Confidence 34578888888877777666555432 2111112111 122111 1 1 12445566666666555421
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 020262 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (328)
Q Consensus 165 D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (328)
. +..........+.+-.+|.+.|+++.+...++..-... .....-.....+..++.+|.++...+++.+|.+++..|+
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 01124455566778899999999999988877543210 000001234567788899999999999999999999999
Q ss_pred HhcCc
Q 020262 244 INCNP 248 (328)
Q Consensus 244 ~~c~~ 248 (328)
..+|.
T Consensus 223 ~~~~~ 227 (311)
T 3nf1_A 223 TRAHE 227 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 14
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.66 E-value=1.1 Score=34.26 Aligned_cols=98 Identities=10% Similarity=-0.082 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.+.+.++.......+ ...........+-.+|+..|+++.+...++..-.. .+. .-........++.+|.++
T Consensus 64 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 64 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE--LKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHH--ccchHhHHHHHHHHHHHH
Confidence 34555556666655543321 12333445567788999999999998877643221 011 112345577788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..|+..+..
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 15
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.46 E-value=0.58 Score=39.80 Aligned_cols=147 Identities=9% Similarity=-0.034 Sum_probs=89.2
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 020262 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (328)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (328)
...+++.+|...+.+.+....+.+.. +......++ ..+|... ... ...++|...+.++...+..
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~-------~~l~~~~----~~~----g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 54 RDQNKYKEAAHLLNDALAIREKTLGK-DHPAVAATL-------NNLAVLY----GKR----GKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCT-TCHHHHHHH-------HHHHHHH----HTT----TCHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHcCC-cchHHHHHH-------HHHHHHH----HHh----ccHHHHHHHHHHHHHHHHH
Confidence 45678999999888887776665542 222222222 2222211 111 2445555566665554421
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 020262 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (328)
Q Consensus 165 D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (328)
. +............+-.+|++.|+++-+...++..-... .....-.....+..++.+|.++...+++.+|.+++..|+
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY-ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 01123445556678889999999999988877443210 000001134567788899999999999999999999999
Q ss_pred HhcCc
Q 020262 244 INCNP 248 (328)
Q Consensus 244 ~~c~~ 248 (328)
..+|.
T Consensus 197 ~~~~~ 201 (283)
T 3edt_B 197 TRAHE 201 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.18 E-value=0.77 Score=42.20 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=102.9
Q ss_pred HHHhhhhccCCHHHHHHHHHHHHHHHHHHhccc-CCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 020262 79 FRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMK 157 (328)
Q Consensus 79 l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~ 157 (328)
++.......+++.+|...+.+.+.. +... +.... +..+..+|...- . . ...++|...+.+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~-------a~~~~~lg~~~~---~-~----~~~~~A~~~~~~ 168 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESK----LIFVKDRIEK-------AEFFFKMSESYY---Y-M----KQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHHH-------HHHHHHHHHHHH---H-T----TCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHHHH-------HHHHHHHHHHHH---H-c----CCHHHHHHHHHH
Confidence 3444456678899998877666532 2221 11111 112222332111 0 1 234556666777
Q ss_pred HHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHH
Q 020262 158 VFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAAD 236 (328)
Q Consensus 158 ~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~ 236 (328)
+.......+....+.....+.+-.+|..+|+++.|...++. ++-. |.. -.......-++.+|.++...++|.+|.
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA--EAE--KQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHc--CChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 76666654333556667778888999999999999887763 3321 111 123345667788999999999999999
Q ss_pred HHHHHHHHhcCcCch-HHHHHHHHHHHHHHhhcCCCCCh
Q 020262 237 QKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPKD 274 (328)
Q Consensus 237 ~~L~~A~~~c~~~~~-~n~~~IL~~LIpv~LllG~~P~~ 274 (328)
+++..|+..++.... .+.-.++..+--+-.-+|++...
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 999999997654322 23334444444444456765543
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.06 E-value=2.7 Score=37.86 Aligned_cols=123 Identities=10% Similarity=-0.055 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++.......+ ...........+-.+|.+.|+++-+...++..-.. .+. .-........++.+|.++
T Consensus 242 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE--LNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHh--cCCcHHHHHHHHHHHHHH
Confidence 34556666666665544321 24455566678889999999999998887744321 111 112455677888999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcCCCCC
Q 020262 227 VFNENFPAADQKLSYALINCNPQS-EANIRMILKYLIPVKLSIGILPK 273 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~-~~n~~~IL~~LIpv~LllG~~P~ 273 (328)
.-.+++.+|.+++..|+..++... ......++..|.-+...+|...+
T Consensus 318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999999999999887543 34555556666666666786544
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.40 E-value=2.6 Score=36.41 Aligned_cols=98 Identities=10% Similarity=-0.082 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++.......+ ...........+-.+|++.|+++.+...++..-.. .|. .-........++.+|.++
T Consensus 238 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQE--LKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--HTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHh--cCCcHHHHHHHHHHHHHH
Confidence 34455556666655544321 23445556667889999999999999887744321 111 112445677788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..|+..++.
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC---
T ss_pred HHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999988763
No 19
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.25 E-value=0.68 Score=35.48 Aligned_cols=99 Identities=9% Similarity=-0.025 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...+... ..........+.+-.+|+..|+++.+...++..-.. .+. .-.....+...+.+|.++
T Consensus 24 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~~ 99 (164)
T 3ro3_A 24 NFRDAVIAHEQRLLIAKEF-GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTY 99 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHH--hCCcHHHHHHHHHHHHHH
Confidence 3455555666665554322 113455566778889999999999999888754321 111 112345677889999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|.+++..|+..++..
T Consensus 100 ~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 100 TLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999887643
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.14 E-value=0.88 Score=41.85 Aligned_cols=173 Identities=10% Similarity=-0.015 Sum_probs=97.7
Q ss_pred HHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 020262 79 FRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKV 158 (328)
Q Consensus 79 l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~ 158 (328)
++.......+++.+|.+.+.+.+..+ ...... | ..+.....+|...- .. ...+.|...+.++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~---~---~~a~~~~~lg~~y~----~~----~~~~~A~~~~~~a 167 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKEL----PFVSDD---I---EKAEFHFKVAEAYY----HM----KQTHVSMYHILQA 167 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTG----GGCCCH---H---HHHHHHHHHHHHHH----HT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH----hhCCCh---H---HHHHHHHHHHHHHH----Hc----CCcHHHHHHHHHH
Confidence 34444466788888888776655332 211111 1 11222222332111 01 1344555666666
Q ss_pred HHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHH
Q 020262 159 FGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237 (328)
Q Consensus 159 f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~ 237 (328)
..................+.+-.+|.++|+++.|...+. +++-.. . .-.......-++.+|.++...+++.+|.+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM--D--IQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--H--cCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 555554332234566667788889999999999987665 343221 1 01223556678889999999999999999
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCC
Q 020262 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPK 273 (328)
Q Consensus 238 ~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~ 273 (328)
++..|+..+........-.++..+--+-.-+|+...
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence 999999865532222223344444444444566543
No 21
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=93.03 E-value=1.9 Score=31.58 Aligned_cols=88 Identities=15% Similarity=-0.063 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. .|. ....++.+|.++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~ 90 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPAN----AV---YFCNRAAAYSKLGNYAGAVQDCERAICI-DPA--------YSKAYGRMGLAL 90 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC----HH---HHHHHHHHHHHhhchHHHHHHHHHHHhc-Ccc--------CHHHHHHHHHHH
Confidence 3455555666555442221 12 3345667889999999998888755432 121 145679999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.+..|+...|.+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhCCHHHHHHHHHHHHhcCccch
Confidence 999999999999999999988654
No 22
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.00 E-value=2.6 Score=37.69 Aligned_cols=212 Identities=12% Similarity=0.026 Sum_probs=115.4
Q ss_pred ChHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 020262 70 PFADITVPLFRSLQHY-RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKL 148 (328)
Q Consensus 70 ~~~~iv~~~l~~~~~~-~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~l 148 (328)
.|++.+..|-+....+ ..+++.+|-+.+.+.+...-+. ...+ ..+..+..++...- ..+ ..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~------~~a~~~~~lg~~~~----~~g----~~ 92 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN----RSLF------HAAKAFEQAGMMLK----DLQ----RM 92 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHH------HHHHHHHHHHHHHH----HTT----CG
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CCHH------HHHHHHHHHHHHHH----hCC----CH
Confidence 4666665665554432 3467888877776665543221 1111 11222223332111 111 22
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 149 KAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 149 e~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
++|...+.++....... ....+.....+.+-.+|.+ |+++.+-..++ +++-. |... ........++-+|.++.
T Consensus 93 ~~A~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~~--~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVEN-GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENEE--RLRQAAELIGKASRLLV 166 (307)
T ss_dssp GGGHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHHHHH
Confidence 33334444443332221 1123444455667778888 99998876665 44321 1111 12344667788999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCch-HHHHHHHHHHHHHHhhcCCCCChH-hhccc----Cc------cccHHHHHHHhhC
Q 020262 228 FNENFPAADQKLSYALINCNPQSE-ANIRMILKYLIPVKLSIGILPKDW-LLEKY----NL------VEYSNIVQALRRG 295 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~-~n~~~IL~~LIpv~LllG~~P~~~-ll~~~----~l------~~y~~l~~avk~G 295 (328)
-.++|.+|.++++.|+..+|.... ......+.-+.-+.+-+|++.... .+++. .. .....+..++..|
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~ 246 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ 246 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998875542 222333444444555557654331 22221 11 1246778889999
Q ss_pred CHHHHHHHHH
Q 020262 296 DLRLLRHALE 305 (328)
Q Consensus 296 nl~~f~~~l~ 305 (328)
|...|.++.+
T Consensus 247 d~~~~~~~~~ 256 (307)
T 2ifu_A 247 DEEQLLRVCR 256 (307)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHh
Confidence 9999999433
No 23
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.81 E-value=1.7 Score=34.69 Aligned_cols=89 Identities=6% Similarity=-0.074 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. +...+-.+|+++|+++-+...++..-.. .|. ....+|.+|.++
T Consensus 26 ~~~~A~~~~~~al~~~p~~----~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~ 89 (164)
T 3sz7_A 26 EYSKAIDLYTQALSIAPAN----PI---YLSNRAAAYSASGQHEKAAEDAELATVV-DPK--------YSKAWSRLGLAR 89 (164)
T ss_dssp CHHHHHHHHHHHHHHSTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcC----HH---HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 4566666666665543332 22 3345667899999999998887754322 132 267789999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCch
Q 020262 227 VFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
...++|.+|.+++..|+...|.+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999997764
No 24
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=92.76 E-value=1.8 Score=37.21 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=85.7
Q ss_pred HHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 020262 77 PLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLM 156 (328)
Q Consensus 77 ~~l~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~ 156 (328)
.|.+....+..+++.+|...+.+++. .. ++..+....++..+.-... . ...++|...+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~----~~--p~~~~~~~a~~~lg~~~~~-----------~----~~~~~A~~~~~ 76 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFT----YG--RTHEWAADAQFYLARAYYQ-----------N----KEYLLAASEYE 76 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGG----GC--SCSTTHHHHHHHHHHHHHH-----------T----TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH----hC--CCCcchHHHHHHHHHHHHH-----------h----CcHHHHHHHHH
Confidence 34555555667888888876655542 11 2333433333333321111 1 24566666666
Q ss_pred HHHHhhhCCCCchhHHHHHHHHHHHHHHh--------cCChhhHHHHHHHhhccCCCCCCCCCc---------cchhhhh
Q 020262 157 KVFGVLAGKGSKRVGALYLTCQLFKIYFK--------LGTVHLCRSVIRSIETARIFDFEEFPK---------RDKVTYM 219 (328)
Q Consensus 157 ~~f~~~~~D~sKk~g~~~l~n~l~kiYfk--------l~~~~l~~~lik~i~~~~~p~~~~~~~---------~~~v~y~ 219 (328)
+....--++...-.+.+ .+-.+|++ .|+++-+...++.+-.. .|.-..... .+...-.
T Consensus 77 ~~l~~~p~~~~~~~a~~----~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 77 RFIQIYQIDPRVPQAEY----ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHCTTCTTHHHHHH----HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchhHHHHH----HHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCchhHHHHHHHHHHHHHHHHHHH
Confidence 66555333321122222 34557778 99999999888865433 342111000 0011113
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 220 YYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|.+|+++.-.++|.+|...++.++...|.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 8999999999999999999999999988654
No 25
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=92.59 E-value=1.7 Score=35.83 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhH---------HHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVG---------ALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT 217 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g---------~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~ 217 (328)
..++|...+.++...+-.+.....+ ...+...+-.+|+++|+++.|...+...-.. .| +...
T Consensus 53 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~ 123 (198)
T 2fbn_A 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DK--------NNVK 123 (198)
T ss_dssp CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST--------TCHH
T ss_pred CHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cc--------ccHH
Confidence 4556666666666555443211111 1234556778899999999998877754322 12 2356
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+|.+|..+...++|.+|.+++..|+...|.+.
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 789999999999999999999999999988664
No 26
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=92.57 E-value=5.9 Score=35.96 Aligned_cols=123 Identities=11% Similarity=-0.017 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|...+.++....... ............+-.+|++.|+++.+...++..-.. .|. .-.....+..++.+|.++.
T Consensus 199 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDL-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-ARE--FGDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHh--cCCcHHHHHHHHHHHHHHH
Confidence 566666666665554322 123555566678889999999999999887744321 111 1123345667889999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCc-hHHHHHHHHHHHHHHhhcCCCCCh
Q 020262 228 FNENFPAADQKLSYALINCNPQS-EANIRMILKYLIPVKLSIGILPKD 274 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~-~~n~~~IL~~LIpv~LllG~~P~~ 274 (328)
..+++.+|.+++..|+..++... ....-.++..+.-+-+.+|++...
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999988543 223334444444444556776543
No 27
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.44 E-value=1.2 Score=33.57 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.....+-.+|++.|+++-+...++..-.. .|. . ...++.+|..+...+++.+|.+.+..|+...|.+.
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~------~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQ-FPN------H--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT------C--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 34456778899999999999888755332 232 1 56788999999999999999999999999988664
No 28
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.29 E-value=1 Score=35.02 Aligned_cols=88 Identities=8% Similarity=-0.149 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ ...+ ..+-.+|+++|+++.|-..++..-.. -|. -+..+|.+|.++
T Consensus 28 ~~~~A~~~~~~al~~~p~~----~~~~---~~~~~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~ 91 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPEN----AILY---SNRAACLTKLMEFQRALDDCDTCIRL-DSK--------FIKGYIRKAACL 91 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----HHHH---HHHhhHHHhhccHHHHHHHHHHHHHh-hhh--------hhHHHHHHHHHH
Confidence 4566777666665443222 2222 35567889999999988777643221 121 245689999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...++|.+|.++++.|+...|.+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCH
Confidence 999999999999999999999765
No 29
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.20 E-value=2.8 Score=31.30 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.+.+.+....--++. .....+ ..+-.+|++.|+++-+...++.+-.. .|+ ......-+|.+|.++
T Consensus 17 ~~~~A~~~~~~~~~~~p~~~-~~~~~~---~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 17 KYDDASQLFLSFLELYPNGV-YTPNAL---YWLGESYYATRNFQLAEAQFRDLVSR-YPT-----HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp CHHHHHHHHHHHHHHCSSST-THHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-----STTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCc-ccHHHH---HHHHHHHHHhccHHHHHHHHHHHHHH-CCC-----CcccHHHHHHHHHHH
Confidence 45566666665544322221 111222 24556789999999999888765432 232 112346688999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.+..++...|.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999999988765
No 30
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.15 E-value=1.9 Score=32.01 Aligned_cols=66 Identities=11% Similarity=-0.139 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...+++.+|.+++..|+...|.+.
T Consensus 53 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 53 YSNRAACYTKLLEFQLALKDCEECIQL-EPT--------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 345667899999999998888754332 121 245788999999999999999999999999988654
No 31
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=92.01 E-value=4.9 Score=33.76 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=87.6
Q ss_pred hccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhhC
Q 020262 85 YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAG 164 (328)
Q Consensus 85 ~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~f~~~~~ 164 (328)
...+++.+|.+.+.+.+...-+.... +....... +..+|... . . ....++|...+.++...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~-------~~~la~~~---~-~----~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGK-FHPDVAKQ-------LNNLALLC---Q-N----QGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCT-TCHHHHHH-------HHHHHHHH---H-T----TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCC-CChHHHHH-------HHHHHHHH---H-H----cCCHHHHHHHHHHHHHHHHH
Confidence 44678999999888888776666543 21111111 12222211 1 1 12455666666666665422
Q ss_pred C-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhcc----CCCC---------------------------------
Q 020262 165 K-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA----RIFD--------------------------------- 206 (328)
Q Consensus 165 D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~----~~p~--------------------------------- 206 (328)
. +............+-.+|.+.|+++-+...++..-.. ..+.
T Consensus 160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (283)
T 3edt_B 160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239 (283)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1 0112344455667889999999999998887644321 0000
Q ss_pred -CCC--CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 207 -FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 207 -~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
... -...+....++.+|.++...+++.+|.+.+..|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 240 WYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 022456677889999999999999999999999863
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.90 E-value=0.85 Score=36.48 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=52.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+=++|++.|+++.|...++..-.. .|. -...++.+|.++...+++.+|.+++..|+...|.+..
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 100 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV-QER--------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKD 100 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHH
Confidence 3557899999999999888754322 132 2567899999999999999999999999999997653
No 33
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.88 E-value=5.2 Score=33.74 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=44.2
Q ss_pred HhcCChhhHHHHHHHhhccCCCCCCCCCccc------------hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 184 FKLGTVHLCRSVIRSIETARIFDFEEFPKRD------------KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 184 fkl~~~~l~~~lik~i~~~~~p~~~~~~~~~------------~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...|+++-+...++.+-.. .|+- +... ...+.+.+|++++-+++|.+|...++.++...|.+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~~-~P~~---~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRG-YPNS---QYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTT-CTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred cCcHHHHHHHHHHHHHHHH-CcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 3456777777777655432 3431 1111 123458899999999999999999999999999764
No 34
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.82 E-value=2.3 Score=33.88 Aligned_cols=88 Identities=8% Similarity=-0.066 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.+....--+ ....+ ..+-.+|+++|+++-+...++..-.. .|. -...+|++|..+
T Consensus 36 ~~~~A~~~~~~al~~~p~----~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~l-~p~--------~~~~~~~lg~~~ 99 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHY----DSRFF---LGLGACRQAMGQYDLAIHSYSYGAVM-DIX--------EPRFPFHAAECL 99 (148)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCcc----cHHHH---HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CchHHHHHHHHH
Confidence 455566655555433222 22222 35677899999999998888754322 132 134679999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+..+|.+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCC
Confidence 999999999999999999998643
No 35
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=91.77 E-value=2.8 Score=36.19 Aligned_cols=98 Identities=9% Similarity=-0.024 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...+... ............+-.+|++.|+++.+...++..-.. .|. .-.........+.+|.++
T Consensus 198 ~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~ 273 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTY 273 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHh--hcchhHHHHHHHHHHHHH
Confidence 3455555666665554432 123445556677888999999999998888754321 111 112345577888999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..|+...+.
T Consensus 274 ~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 274 TLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988764
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=91.74 E-value=4 Score=36.68 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...+...+ .........+.+-.+|++.|+++.+...++..-.. .|. .-.....+..++.+|.++
T Consensus 202 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQ--LKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHh--CcCchHHHHHHHHHHHHH
Confidence 44556666666666554432 23455556778888999999999998887744321 111 112445677889999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|.+++..|+...+..
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887654
No 37
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.49 E-value=0.75 Score=34.02 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-.+|++.|+++-+...++..-.. .|. ....++++|.++...+++.+|.+.+..|+..+|...
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVET-DPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 5567889999999999888754332 232 234788999999999999999999999999887543
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=91.41 E-value=2.5 Score=36.83 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCC-CCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDF-EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~-~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
..+.+-.+|++.|+++-+...++..-.. .|.. +..........++.+|.++...+++.+|.++++.|+...|.+..
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence 4456778899999999999888755332 1111 12223455678889999999999999999999999999887653
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.26 E-value=2.9 Score=36.86 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|...+.++...+...+........+.+.+-.+|+++|+++-|-..++.. +-. +. .-........+|.+|.+
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~--~~~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--CR--INSMALIGQLYYQRGEC 245 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--TTBCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--Hh--cCcHHHHHHHHHHHHHH
Confidence 45566666777665543322222222256678889999999999999887743 321 11 11123457788999999
Q ss_pred hhhhcChHHH-HHHHHHHHHhcCc
Q 020262 226 EVFNENFPAA-DQKLSYALINCNP 248 (328)
Q Consensus 226 ~~~~~~~~~A-~~~L~~A~~~c~~ 248 (328)
+.-.+++.+| .+++..|+..+..
T Consensus 246 y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999 8999999987643
No 40
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=91.11 E-value=2.2 Score=30.43 Aligned_cols=90 Identities=7% Similarity=-0.081 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ ...+ ..+-.+|++.|+++.+...++..-.. .| ........+.+|.++
T Consensus 21 ~~~~A~~~~~~a~~~~~~~----~~~~---~~~a~~~~~~~~~~~A~~~~~~a~~~-~~------~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEE----SKYW---LMKGKALYNLERYEEAVDCYNYVINV-IE------DEYNKDVWAAKADAL 86 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCC----HHHH---HHHHHHHHHTTCHHHHHHHHHHHHHT-SC------CTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCC----HHHH---HHHHHHHHHccCHHHHHHHHHHHHHh-Cc------ccchHHHHHHHHHHH
Confidence 4455666666655443221 2222 35567889999999998887754332 12 122356788999999
Q ss_pred hhh-cChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFN-ENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~-~~~~~A~~~L~~A~~~c~~~~ 250 (328)
... +++.+|.++++.+....|.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999 999999999999999988653
No 41
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.10 E-value=1 Score=34.24 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. .|. ....+|.+|.++
T Consensus 24 ~~~~A~~~~~~al~~~~~~----~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~ 87 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLV----AV---YYTNRALCYLKMQQPEQALADCRRALEL-DGQ--------SVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCc----HH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cch--------hHHHHHHHHHHH
Confidence 4556666666655543222 22 3346677889999999998887754332 121 355788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..|+...|.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999886
No 42
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=91.06 E-value=2.6 Score=32.82 Aligned_cols=88 Identities=9% Similarity=-0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.+....--. ....+ ..+-.+|++.|+++.+...++..-.. .|. -...+|.+|.++
T Consensus 33 ~~~~A~~~~~~al~~~p~----~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~ 96 (142)
T 2xcb_A 33 KWDDAQKIFQALCMLDHY----DARYF---LGLGACRQSLGLYEQALQSYSYGALM-DIN--------EPRFPFHAAECH 96 (142)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCc----cHHHH---HHHHHHHHHHhhHHHHHHHHHHHHhc-CCC--------CcHHHHHHHHHH
Confidence 455555555555433212 22222 24566789999999998888754332 131 134678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+...|.+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999988553
No 43
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.03 E-value=2.8 Score=37.02 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc-c-CCCCCCCCCccchhhhhhhhhH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET-A-RIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~-~-~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
..++|...+.++....... ....+...+.+.+-.+|++.|+++.+...++..-. . ..| -.....+..+|.+|.
T Consensus 130 ~~~~Ai~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCC-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS----CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHH
Confidence 4566666677776643332 22345666788899999999999999887774432 1 121 145577788999999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 225 LEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
++.-.++|.+|.+++..|+..|+..
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988644
No 44
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.92 E-value=2.2 Score=32.42 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-+ ..........+-.+|++.|+++-+...++..-.. .|. ....+|.+|.++
T Consensus 43 ~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 109 (148)
T 2dba_A 43 DYGGALAAYTQALGLDAT----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGG--------DVKALYRRSQAL 109 (148)
T ss_dssp CHHHHHHHHHHHHTSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSC--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccc----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-Ccc--------CHHHHHHHHHHH
Confidence 445555555555433211 1112334446677899999999998887754322 121 256788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+...|.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999999988654
No 45
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.92 E-value=1.9 Score=31.16 Aligned_cols=64 Identities=13% Similarity=-0.072 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+-..|++.|+++-+...++..-.. .|. ....++.+|..+...++|.+|.++++.|+...|.+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA-QPQ--------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34557889999999998877744322 132 14668899999999999999999999999999976
No 46
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.79 E-value=2.9 Score=33.91 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.+.+.+....--+ ....+ ..+=.+|+++|+++-+-..++..-.. .|. -...+|.+|..+
T Consensus 51 ~~~eA~~~~~~al~~~P~----~~~~~---~~lg~~~~~~g~~~~Ai~~~~~al~l-~P~--------~~~~~~~lg~~~ 114 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFY----NVDYI---MGLAAIYQIKEQFQQAADLYAVAFAL-GKN--------DYTPVFHTGQCQ 114 (151)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHH-SSS--------CCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC----CHHHH---HHHHHHHHHHccHHHHHHHHHHHHhh-CCC--------CcHHHHHHHHHH
Confidence 556666666665443222 22222 24557899999999998877644322 132 235688999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCchH
Q 020262 227 VFNENFPAADQKLSYALINCNPQSEA 252 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (328)
...+++.+|.+++..|+..+|.+..+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~~~ 140 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEKLK 140 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999977644
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.74 E-value=3.2 Score=37.83 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...+.... ...........+-.+|.+.|+++.+...++..-.. .|. .-........++.+|.++
T Consensus 238 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~~~~~~~la~~~ 313 (411)
T 4a1s_A 238 DFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL-AVE--LGEREVEAQSCYSLGNTY 313 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-HHH--cCCHHHHHHHHHHHHHHH
Confidence 34556666666666554321 23445556678889999999999999888744321 111 112345677889999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|.++++.|+..++..
T Consensus 314 ~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 314 TLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999887643
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.72 E-value=2.3 Score=30.62 Aligned_cols=88 Identities=11% Similarity=-0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-++ . .....+-.+|++.|+++.+...++..-.. .|. ....++.+|..+
T Consensus 19 ~~~~A~~~~~~~~~~~~~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 82 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHN----H---VLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPD--------WGKGYSRKAAAL 82 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCc----H---HHHHHHHHHHHhhccHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 4556666666665543222 1 13345566889999999999888755432 121 245678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+...|.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 999999999999999999988654
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.63 E-value=2.9 Score=34.82 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCC-----------------
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE----------------- 209 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~----------------- 209 (328)
..++|...+.++....-.+.............+-.+|.+.|+++-+...++..-.. .|.-+.
T Consensus 53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CchhHHHHHHhHHHHHHHHHHHH
Confidence 34556666666655544432223333455567778889999999888877754432 111000
Q ss_pred -CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 210 -FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 210 -~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
....+....++.+|.++...+++.+|.+++..|+...|.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 173 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH
Confidence 01234566788999999999999999999999999988764
No 50
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.62 E-value=1.5 Score=31.53 Aligned_cols=64 Identities=9% Similarity=-0.024 Sum_probs=50.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhh-hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVT-YMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~-y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.-..|++.|+++-+...++..-.. .|. -.. .++.+|.++...+++.+|.+++..|+...|.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPV--------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSS--------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 345788999999998888755332 121 134 7889999999999999999999999999997753
No 51
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.56 E-value=1.3 Score=33.13 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+-..|++.|+++.+...++.+-.. .|. ........|.+|..++..++|.+|.+.+..++...|.+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~p~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-YPN-----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CSS-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-CCC-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 446788999999999988866543 232 122336788999999999999999999999999988663
No 52
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=90.47 E-value=8.5 Score=34.63 Aligned_cols=123 Identities=13% Similarity=-0.006 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|.+.+.+........+ ...+.....+.+-.+|+..|+++-+...++..-.. .+.............++.+|.++.
T Consensus 69 ~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 69 LTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccCcHHHHHHHHHHHHHH
Confidence 4445555555555443321 23455566677888999999999998877643221 011001111234556677999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCC
Q 020262 228 FNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILP 272 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P 272 (328)
..+++.+|..++..|+..++.......-..+..+--+.+..|++.
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 191 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999986433222223333333444456554
No 53
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=90.42 E-value=2.6 Score=29.24 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-.+|++.++++.+...++..-.. .|. .....+.+|.++...+++.+|.+++..|+...|.+.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 35567889999999998887754322 121 145678999999999999999999999999988654
No 54
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.20 E-value=1.6 Score=34.67 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+.+.+-.+|+++|+++.|...+...-.. -|. .+..+|.+|..+...++|.+|...+..|+...|.+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-EET--------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-CCc--------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 344567778999999999988776643222 121 256789999999999999999999999999998765
No 55
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=89.97 E-value=9.4 Score=33.45 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
.++|.....++......-+........+.+.+-.+|+++|+++.|...++ +++-. +. .-........+|.+|.++
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~--~~--~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--CR--INSMALIGQLYYQRGECL 246 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH--TTBCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HH--cCcHHHHHHHHHHHHHHH
Confidence 45555555555544332112345666677889999999999999988776 33322 11 112334578899999999
Q ss_pred hhhc-ChHHHHHHHHHHHHhcC
Q 020262 227 VFNE-NFPAADQKLSYALINCN 247 (328)
Q Consensus 227 ~~~~-~~~~A~~~L~~A~~~c~ 247 (328)
.-.+ +|.+|.+++..|+..+.
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH
Confidence 9999 57999999999998654
No 56
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=89.91 E-value=9.3 Score=33.29 Aligned_cols=92 Identities=11% Similarity=-0.034 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ ..........+-.+|++.|+++-+...++..-.. .|. ....++.+|.++
T Consensus 249 ~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~~~~~ 316 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPSV---AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPD--------NVNALKDRAEAY 316 (359)
T ss_dssp CHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 3455555555554433222 2223334456778999999999999888865432 121 245788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.++++.|+...|.+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999988664
No 57
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.88 E-value=2 Score=35.32 Aligned_cols=106 Identities=10% Similarity=0.031 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCC--------CCCccchhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFE--------EFPKRDKVTY 218 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~--------~~~~~~~v~y 218 (328)
..++|...+.++....-+ ... ..+.+-.+|++.|+++.+...++..-.. .|.-. ..-.......
T Consensus 52 ~~~~A~~~~~~al~~~~~----~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 52 NMTEAEKAFTRSINRDKH----LAV---AYFQRGMLYYQTEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp CHHHHHHHHHHHHHHCTT----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHH
T ss_pred CHHHHHHHHHHHHHhCcc----chH---HHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHH
Confidence 345555556555544222 122 2345667899999999999888754332 22211 0022345677
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHH
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKY 260 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~ 260 (328)
+|.+|..+...+++.+|.+.+..|+...|..........+..
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~ 165 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 165 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHH
Confidence 899999999999999999999999999997765544444443
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=89.50 E-value=5.3 Score=31.07 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 57 ~~~~A~~~~~~~~~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 120 (186)
T 3as5_A 57 AVDRGTELLERSLADAPDN----VK---VATVLGLTYVQVQKYDLAVPLLIKVAEA-NPI--------NFNVRFRLGVAL 120 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC----HH---HHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcH--------hHHHHHHHHHHH
Confidence 3455666666665542221 22 2345667888999999999888765432 121 235678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|.+.+..|+..+|.+
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCcHHHHHHHHHHHHhcCccc
Confidence 99999999999999999988765
No 59
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=89.27 E-value=4.4 Score=29.50 Aligned_cols=86 Identities=13% Similarity=0.004 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++-+...++..-.. .|. .....+.+|.++
T Consensus 50 ~~~~A~~~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 113 (136)
T 2fo7_A 50 DYDEAIEYYQKALELDPRS----AE---AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAY 113 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCc----hH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHH
Confidence 3455555555554432221 11 2345678899999999999888765432 121 134567789999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+.+..++...|.
T Consensus 114 ~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 114 YKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999988774
No 60
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.26 E-value=1.9 Score=31.79 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...+...-.. .|.. .-........+|.+|.++
T Consensus 19 ~~~~A~~~~~~a~~~~~~~----~~---~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTN----MT---YITNQAAVYFEKGDYNKCRELCEKAIEV-GREN-REDYRQIAKAYARIGNSY 89 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHS-TTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcc----HH---HHHHHHHHHHHhccHHHHHHHHHHHHhh-cccc-chhHHHHHHHHHHHHHHH
Confidence 4556666666665543221 22 3345677899999999998887754332 1210 011122366788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCc
Q 020262 227 VFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+++.+|.+++..|+...|.
T Consensus 90 ~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998873
No 61
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.14 E-value=4.9 Score=32.30 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhccC-CCCCCCCCccchhhhhhhhhH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETAR-IFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~~-~p~~~~~~~~~~v~y~YY~Gr 224 (328)
..++|...+.++...+...+ .........+.+-.+|...|+++-+...+.. ++-.. .++ .....+..++.+|.
T Consensus 41 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~lg~ 115 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE----DPLAASANAYEVAT 115 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc----cHHHHHHHHHHHHH
Confidence 34556666666666555431 2455566677888999999999999887764 33211 110 12256778899999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCc
Q 020262 225 LEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
++...+++.+|.+++..|+..++.
T Consensus 116 ~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 116 VALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 62
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=89.13 E-value=3.1 Score=31.21 Aligned_cols=85 Identities=8% Similarity=-0.116 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-++ . .....+-.+|+++|+++-+...++..-.. .|. ....+|.+|.++
T Consensus 19 ~~~~A~~~~~~al~~~p~~----~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~ 82 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPED----A---RGYSNRAAALAKLMSFPEAIADCNKAIEK-DPN--------FVRAYIRKATAQ 82 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----h---HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHH
Confidence 4566666666665543332 2 23345667899999999998877744322 132 256789999999
Q ss_pred hhhcChHHHHHHHHHHHHhcC
Q 020262 227 VFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (328)
...++|.+|.+++..|+...|
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999983
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.08 E-value=9 Score=34.80 Aligned_cols=98 Identities=5% Similarity=-0.096 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i-~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|...+.++...+...+ .........+.+-.+|+++|+++.|...++.. +-.. . .-.......-.+.+|.+
T Consensus 199 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~--~--~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE--E--SNILPSLPQAYFLITQI 273 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H--TTCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--h--hccchhHHHHHHHHHHH
Confidence 45666666777766654331 24455566677889999999999998877643 3110 0 01113447778999999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcC
Q 020262 226 EVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
+...+++.+|.+++..|+..++..
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998754
No 64
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.08 E-value=1.7 Score=32.28 Aligned_cols=65 Identities=12% Similarity=-0.015 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+-.+|++.|+++-+...++..-.. .|. ....+|.+|.++...+++.+|...+..|+...|..
T Consensus 22 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 22 RFTLGKTYAEHEQFDAALPHLRAALDF-DPT--------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 345667899999999998888754322 121 24567899999999999999999999999988754
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=89.02 E-value=6.4 Score=33.19 Aligned_cols=64 Identities=9% Similarity=-0.115 Sum_probs=38.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-.+|.+.|+++.+...++..-.. .|. ....++.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL-DPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc-Ccc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 4445666677777666666543322 121 135566677777777777777777777777666554
No 66
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.95 E-value=2.4 Score=39.00 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..+.+.....++...+... .+.....-+...+-++|+..|+++-+..+++.+.... .. .-.+.+.+.+....|+++
T Consensus 110 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKRE-KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF-KK--LDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHS-SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TT--SSCSTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH-Hh--cccchhHHHHHHHHHHHH
Confidence 4455555555555544332 2233445566788999999999999999988765421 11 224678899999999999
Q ss_pred hhhcChHHHHHHHHHHHHhcC
Q 020262 227 VFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~ 247 (328)
...+||.+|...++.|....+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhh
Confidence 999999999999999997654
No 67
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=88.87 E-value=3 Score=29.90 Aligned_cols=65 Identities=3% Similarity=-0.185 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-..|++.|+++.+...+...-.. .|. -....+.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL-DPH--------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH-CCC--------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 35567888999999999888765432 121 256788999999999999999999999999988643
No 68
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.79 E-value=6.8 Score=30.18 Aligned_cols=88 Identities=8% Similarity=-0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|.+.|+++.+...++..-.. .|. ....++.+|.++
T Consensus 28 ~~~~A~~~~~~al~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~ 91 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSN----AI---YYGNRSLAYLRTECYGYALGDATRAIEL-DKK--------YIKGYYRRAASN 91 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----hH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 3455555555555432221 22 2335667889999999998887754432 121 245678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+...|.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999988654
No 69
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.77 E-value=2.5 Score=30.09 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...++|.+|.++++.|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL-DPE--------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4556789999999998888754332 121 2346788999999999999999999999999887
No 70
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=88.68 E-value=4.3 Score=34.01 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=16.4
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
..+.+|.++...+++.+|.+++..|+...|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 3444555555555555555555555555543
No 71
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.51 E-value=3.3 Score=30.65 Aligned_cols=65 Identities=6% Similarity=-0.201 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-.+|++.|+++.+...+...-.. .|. -...++.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR-NPK--------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT-CTT--------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 34566889999999999888755422 121 256788999999999999999999999999888654
No 72
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=88.47 E-value=3.4 Score=31.13 Aligned_cols=65 Identities=9% Similarity=-0.226 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-..|++.|+++.+...++..-.. .|. ....++.+|.+++..++|.+|..++..|+...|.+.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhh-CcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence 35567889999999999888754322 122 256889999999999999999999999999988654
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=88.33 E-value=5.4 Score=29.02 Aligned_cols=68 Identities=10% Similarity=-0.127 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.....+-.+|+..|+++.+...++..-.. .|. ....++.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-NPA--------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 34456677889999999999888755432 121 155788999999999999999999999999887653
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=88.29 E-value=8.5 Score=31.08 Aligned_cols=90 Identities=7% Similarity=-0.082 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhc-CChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKL-GTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl-~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|...+.++....-.+ .. ....+-.+|++. |+++-+...++.+-. .|. . ......++.+|.+
T Consensus 57 ~~~~A~~~~~~a~~~~~~~----~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~~---~--~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 57 VNDKAQESFRQALSIKPDS----AE---INNNYGWFLCGRLNRPAESMAYFDKALA--DPT---Y--PTPYIANLNKGIC 122 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHTTTCCHHHHHHHHHHHHT--STT---C--SCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCC----hH---HHHHHHHHHHHhcCcHHHHHHHHHHHHc--CcC---C--cchHHHHHHHHHH
Confidence 3455556666665443221 11 234567788999 999999888876543 121 1 2345667889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...+++.+|.+.+..|+...|.+.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999888653
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=87.73 E-value=16 Score=33.17 Aligned_cols=98 Identities=8% Similarity=-0.099 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...+...+ .........+.+-.+|.+.|+++.|...++..-.. .. .........-.+.+|.++
T Consensus 197 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~-~~---~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 197 HYDKALPHLEAALELAMDIQ-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV-SR---EKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HH---HHCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HH---hhCChhHHHHHHHHHHHH
Confidence 45566666666666554321 23455666778889999999999998877743221 00 001112267789999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.-.+++.+|.+++..|+..++..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998854
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=87.47 E-value=9.1 Score=31.95 Aligned_cols=69 Identities=6% Similarity=-0.077 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
......+-.+|++.|+++.+...++..-.. .| +....++.+|.++...+++.+|.+.+..++...|...
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NR--------NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Cc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 344456778899999999999888765432 12 1256778999999999999999999999999888543
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=87.46 E-value=2.8 Score=32.41 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
..=..||+.|+++.+-..++. ++.. |. ....++.+|..+...+++.+|.+.++.|+...|....
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~--p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD--PE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 344578999999999888764 4421 21 2567889999999999999999999999999887653
No 78
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.45 E-value=6.4 Score=28.32 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ . .....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 24 ~~~~A~~~~~~~~~~~~~~----~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~ 87 (125)
T 1na0_A 24 DYDEAIEYYQKALELDPNN----A---EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAY 87 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCc----H---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHH
Confidence 4455666666665442221 1 23446678899999999999888765432 121 134678899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.+..|+...|.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999988654
No 79
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=87.10 E-value=18 Score=33.07 Aligned_cols=92 Identities=12% Similarity=-0.033 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-++ ..........+-.+|.+.|+++-+...++..-.. .|+ ....++.+|..+
T Consensus 272 ~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~--------~~~~~~~l~~~~ 339 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSI---AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPD--------NVNALKDRAEAY 339 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc--------cHHHHHHHHHHH
Confidence 4556666666665532221 2222345667788999999999999888865322 121 236788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.++.|+...|.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchH
Confidence 999999999999999999988764
No 80
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=86.99 E-value=3.9 Score=32.41 Aligned_cols=65 Identities=6% Similarity=-0.138 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-.+|++.|+++-+...++..-.. .|. ....++.+|.+++..++|.+|.+++..|+...|.+.
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 79 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSI-APA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS 79 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 45667889999999998888754322 132 257889999999999999999999999999988664
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.96 E-value=1.4 Score=36.94 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
...+-.+|.+.|+++.+...++..-.. .|. +.......+..++.+|.++...++|.+|.++++.|+...|.
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKA-VPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 345777899999999999888755432 232 11112344578999999999999999999999999999887
No 82
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=86.95 E-value=3.2 Score=40.00 Aligned_cols=94 Identities=10% Similarity=-0.074 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|...+.++.......+..........+.+..+|.+.|+++.+...++.+-... |+ ....++.+|.++.
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~--------~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN--------DANVHTAIALVYL 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC--------ChHHHHHHHHHHH
Confidence 44555555555544322110111113355678899999999999999998654331 21 2467889999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCc
Q 020262 228 FNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+++.+|.+.+..|+...|.+.
T Consensus 562 ~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999765
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=86.80 E-value=4.5 Score=31.38 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=52.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-..|++.|+++-+...++..-.. .| ....+++.+|.++...++|.+|.+++..|+...|.+..
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCML-DH--------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHh-CC--------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 4556789999999999988865432 12 12467889999999999999999999999999887653
No 84
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.68 E-value=9 Score=32.32 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-++ ....+ .+-.+|++.|+++.|...++..-.. |+ .......-++.+|.++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~---~~~~~----~l~~~~~~~~~~~~A~~~~~~a~~~--~~----~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNS---PYIYN----RRAVCYYELAKYDLAQKDIETYFSK--VN----ATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCC---STTHH----HHHHHHHHTTCHHHHHHHHHHHHTT--SC----TTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc---HHHHH----HHHHHHHHHhhHHHHHHHHHHHHhc--cC----chhHHHHHHHHHHHHH
Confidence 4556666666665432222 12222 3444888999999888877755331 21 0111344468889999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+++..|+...|...
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~ 108 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRL 108 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHcccHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999888665
No 85
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=86.15 E-value=4.1 Score=35.87 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
..++|...+.++....... ...++.....+.+-.+|.+.|+++.|...+.. ++-. ..|. .....+..+|.+|.
T Consensus 130 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~----~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTG-IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAK 204 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCS-SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc----cccchHHHHHhHHH
Confidence 4566667777776655432 22345666778899999999999999888764 4211 1221 11223478899999
Q ss_pred HhhhhcChHHHHHHHHHHHHhcC
Q 020262 225 LEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
++...++|.+|.+++..|+..++
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 86
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=86.03 E-value=16 Score=34.00 Aligned_cols=72 Identities=10% Similarity=-0.134 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 170 VGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.....+.+.+-.+|+++++++.|...++..-.. -| +....+|.+|..+...++|.+|.++|+.|+...|.+
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-DP--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-Cc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 334455667888999999999998877644322 12 235678999999999999999999999999999865
Q ss_pred c
Q 020262 250 S 250 (328)
Q Consensus 250 ~ 250 (328)
.
T Consensus 341 ~ 341 (370)
T 1ihg_A 341 K 341 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=85.89 E-value=5.6 Score=32.21 Aligned_cols=59 Identities=14% Similarity=-0.031 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhh-cChHHHHHHHHHHHH
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFN-ENFPAADQKLSYALI 244 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~-~~~~~A~~~L~~A~~ 244 (328)
..+-.+|.+.|+++-+...++..-.. .|. ....++.+|.++... +++.+|.+.+..++.
T Consensus 46 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSI-KPD--------SAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 35566777888888777776644322 121 133567778888888 888888888888887
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=85.87 E-value=10 Score=31.23 Aligned_cols=88 Identities=11% Similarity=-0.016 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ .. ....+-.+|++.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 106 ~~~~A~~~~~~~~~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~ 169 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMEN----GD---LFYMLGTVLVKLEQPKLALPYLQRAVEL-NEN--------DTEARFQFGMCL 169 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCS----HH---HHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCC----HH---HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHH
Confidence 3455566666665543322 11 2335667788888888888877754332 121 234677888888
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.+..|+...|.+.
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCcccH
Confidence 888999999999998888877543
No 89
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=85.50 E-value=6 Score=29.56 Aligned_cols=64 Identities=11% Similarity=-0.103 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+=..|++.|+++-+...++..-.. .|. -...++.+|..+...++|.+|.++++.|+...|...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 4456789999999998888744322 132 247889999999999999999999999999988664
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=85.49 E-value=13 Score=30.81 Aligned_cols=88 Identities=5% Similarity=-0.161 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLA-GKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~-~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|...+.++....- .| ...++ .+-.+|+++|+++-+...+...-.. .| +....++.+|.+
T Consensus 22 ~~~~A~~~~~~al~~~~~~~----~~~~~---~~~~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~l~~~ 85 (228)
T 4i17_A 22 NYAVAFEKYSEYLKLTNNQD----SVTAY---NCGVCADNIKKYKEAADYFDIAIKK-NY--------NLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHHTTTCC----HHHHH---HHHHHHHHTTCHHHHHHHHHHHHHT-TC--------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCC----cHHHH---HHHHHHHHhhcHHHHHHHHHHHHHh-Cc--------chHHHHHHHHHH
Confidence 45666667776665543 22 22222 2677899999999998877754322 12 245678899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...++|.+|.+.++.|+...|.+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~ 110 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNA 110 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999999765
No 91
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.36 E-value=5.9 Score=29.84 Aligned_cols=69 Identities=12% Similarity=-0.030 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
....+-..|++.|+++.+...++..-.. .|. ..+....++.+|..+...++|.+|.+.+..|+...|.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL-DAT-----PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-ccc-----chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 3446677899999999999888865422 121 12357788999999999999999999999999987765
No 92
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=85.32 E-value=6.5 Score=31.11 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
...+-..|++.|+++-+...++..-.. -|. -..+++.+|..+...++|.+|.+.+..|+...|.+..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVL-DHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-Ccc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 335667889999999999888855332 121 2467789999999999999999999999999887653
No 93
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=85.28 E-value=13 Score=30.72 Aligned_cols=67 Identities=10% Similarity=-0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
....+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...+++.+|.+++..|+...|...
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKR-APE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-Ccc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH
Confidence 3445677788888888888877755332 121 135677888888888888888888888888877543
No 94
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=85.22 E-value=4.4 Score=30.90 Aligned_cols=63 Identities=13% Similarity=-0.102 Sum_probs=49.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+-..|++.|+++-+...++..-.. .|. -...+|.+|.++...+++.+|...+..|+...|.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK-EPE--------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 445678899999998888754332 132 256778999999999999999999999999988664
No 95
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=85.21 E-value=18 Score=34.62 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.+.+.++....-.| . ...+.+..+|.+.|+++-+..+++.+-.. .|... ......+..++.+|..+
T Consensus 456 ~~~~A~~~~~~~~~~~~~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYD----P---LLLNELGVVAFNKSDMQTAINHFQNALLL-VKKTQ-SNEKPWAATWANLGHAY 526 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHSC-CCSGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----h---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-hhccc-cchhhHHHHHHHHHHHH
Confidence 3455555555554432221 2 23557888999999999999999866432 11110 11222367788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.++.|+...|.+.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999988654
No 96
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=85.20 E-value=8.8 Score=27.88 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...++|.+|.+++..|+...|..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-DPT--------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 45567889999999999988855432 121 24678899999999999999999999999988754
No 97
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=85.06 E-value=7.8 Score=35.27 Aligned_cols=95 Identities=14% Similarity=-0.007 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhCCC---C-----chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKG---S-----KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTY 218 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~---s-----Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y 218 (328)
..++|...+.++....-.+. . .+.......+.+-.+|+++|+++-|...++..-.. .|. .+..
T Consensus 162 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a 232 (336)
T 1p5q_A 162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-DSN--------NEKG 232 (336)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHH
T ss_pred CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------cHHH
Confidence 45666666666665544331 0 11112334556778999999999998887754322 121 3567
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+|.+|..+...++|.+|..+|..|+...|.+.
T Consensus 233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 233 LSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 89999999999999999999999999999764
No 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=84.94 E-value=7.9 Score=30.76 Aligned_cols=88 Identities=9% Similarity=0.070 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHH-HHhcCCh--hhHHHHHHHhhccCCCCCCCCCccchhhhhhhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKI-YFKLGTV--HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTG 223 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~ki-Yfkl~~~--~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~G 223 (328)
..++|...+.++....-++ ... ...+-.+ |++.|++ +.+...++..-.. .|. ....++.+|
T Consensus 59 ~~~~A~~~~~~al~~~p~~----~~~---~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la 122 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLRGEN----AEL---YAALATVLYYQASQHMTAQTRAMIDKALAL-DSN--------EITALMLLA 122 (177)
T ss_dssp CHHHHHHHHHHHHHHHCSC----HHH---HHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-CTT--------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC----HHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHh-CCC--------cHHHHHHHH
Confidence 3455556666655543332 222 2234455 8889997 8787777644322 121 145688999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 224 RLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 224 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.++...+++.+|.+++..|+...|.+.
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999764
No 99
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=84.91 E-value=9.3 Score=36.61 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCC----hhhHHHHHHHhhccCCCCCCCCCccchhhhhhh
Q 020262 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGT----VHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY 221 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~----~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY 221 (328)
...++|...+.++....-++ -...+.++..+.+.||..++ ++.|...++..-.. .|. ..+....++.
T Consensus 193 g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~-----~~~~~~~~~~ 263 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-DRK-----ASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CGG-----GGGCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-CCC-----cccCHHHHHH
Confidence 35566666666666553332 35556677777777777765 67676666543321 121 2356778999
Q ss_pred hhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+|.++...++|.+|.+++..|+..-|...
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999988765
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=84.79 E-value=7.9 Score=27.77 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+-.+|++.|+++.+...++..-.. .|. .....+.+|..+...+++.+|...+..++...|.+.
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL-DPN--------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-CcC--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 45667899999999999888765432 121 245678899999999999999999999999877653
No 101
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=84.76 E-value=6 Score=30.75 Aligned_cols=66 Identities=17% Similarity=0.013 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++.+...++..-.. .|. .....+.+|.++...+++.+|.+++..|+...|.+.
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLAD-APD--------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 345666777888888887777654322 121 134566778888888888888888888888777543
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=84.71 E-value=9.3 Score=27.62 Aligned_cols=87 Identities=13% Similarity=0.005 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++......+ .. ....+-.+|.+.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 16 ~~~~A~~~~~~~~~~~~~~----~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~~ 79 (136)
T 2fo7_A 16 DYDEAIEYYQKALELDPRS----AE---AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPR--------SAEAWYNLGNAY 79 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcc----hh---HHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCC--------chHHHHHHHHHH
Confidence 3455555555554432221 11 2335677889999999999888765432 121 134567889999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|.+.+..++...|..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999987754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=84.55 E-value=5.5 Score=33.25 Aligned_cols=67 Identities=10% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+.+-.+|++.|+++-+...++..-.. .|. -+..++.+|.++...+++.+|.+.++.|+..-|.+..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK-APN--------NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 455778899999999999888754322 132 2567889999999999999999999999999997754
No 104
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.53 E-value=14 Score=30.22 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-.+ . .....+-.+|.+.|+++.+...++..-.. .|. .....+.+|.++
T Consensus 72 ~~~~A~~~~~~~~~~~~~~----~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~~a~~~ 135 (243)
T 2q7f_A 72 ELERALAFYDKALELDSSA----A---TAYYGAGNVYVVKEMYKEAKDMFEKALRA-GME--------NGDLFYMLGTVL 135 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCC--------SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcc----h---HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 3455556666655442221 2 23345678899999999999888765432 121 134578899999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.+..|+...|.+.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCccH
Confidence 999999999999999999988654
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=84.40 E-value=2.7 Score=36.13 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=53.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-..|++.|+++-+...++.+-.. .|. ......-+|++|..+...++|.+|.+.++.++...|.+.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~-~p~-----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY-GRT-----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG-CSC-----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-CCC-----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 3445788999999999999876543 232 123367789999999999999999999999999988653
No 106
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=84.38 E-value=3.8 Score=35.57 Aligned_cols=94 Identities=16% Similarity=0.043 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 148 LKAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~--sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
.++|...+.++........ ............+-.+|.+.|+++-+...++..-.. .|. ....++.+|.+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~ 279 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQ--------NASTYSAIGYI 279 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-Ccc--------chHHHHHHHHH
Confidence 4555566666655543211 000111123346777899999999999888855432 121 35678899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...+++.+|.+++..|+...|.+.
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHhccHHHHHHHHHHHHccCCCch
Confidence 9999999999999999999988765
No 107
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=84.22 E-value=9.9 Score=36.33 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCC--------chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGS--------KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTY 218 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~s--------Kk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y 218 (328)
..++|.....++....-.+.. .......+-+.+-.+|+++++++.|...++..-.. .|. .+..
T Consensus 283 ~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a 353 (457)
T 1kt0_A 283 KYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-DSA--------NEKG 353 (457)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHH
T ss_pred CHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCc--------cHHH
Confidence 456666666666655443310 11122344556778899999999998877744322 121 3567
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+|.+|..++..++|.+|..+|+.|+...|.+.
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 89999999999999999999999999998664
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=84.02 E-value=1.6 Score=40.60 Aligned_cols=115 Identities=6% Similarity=-0.039 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|-+++.+.. -.++ ..+-+-..-.+.++|.++|++++++.+++.+.... | +.....+.+....-.|-+.
T Consensus 115 ~~eeAL~~l~~~i---~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-~--d~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 115 DLDKSLETCVEGI---DNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-E--DTVSGDNEMILNLAESYIK 186 (310)
T ss_dssp CHHHHHHHHHHHH---TSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C--HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---ccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-c--cccccchHHHHHHHHHHHH
Confidence 4566666666652 1111 13555566688999999999999999999886431 1 0011135566666668888
Q ss_pred hhhc--ChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChH
Q 020262 227 VFNE--NFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDW 275 (328)
Q Consensus 227 ~~~~--~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ 275 (328)
+.++ ++.+|+..++.+...+|. .+.-..++. +.+.+|++|..+
T Consensus 187 l~~g~~~~q~A~~~f~El~~~~p~--~~~~~lLln----~~~~~g~~~eAe 231 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQTFPT--WKTQLGLLN----LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHH----HHHHHTCHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhCCC--cccHHHHHH----HHHHcCCHHHHH
Confidence 8888 999999999999988885 122222222 788889999874
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=84.00 E-value=7.5 Score=29.92 Aligned_cols=66 Identities=11% Similarity=-0.119 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-..|++.|+++.+...+...-.. .|. ....++.+|.++...++|.+|.+.+..|+...|.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 345667889999999998888754332 121 156788999999999999999999999999988664
No 110
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=83.89 E-value=3.7 Score=34.84 Aligned_cols=71 Identities=13% Similarity=-0.045 Sum_probs=50.3
Q ss_pred HHHHHHHhcCC---hhhHHHHHHH-hhcc-CCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGT---VHLCRSVIRS-IETA-RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~---~~l~~~lik~-i~~~-~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-++|+.+++ ++.+...++. ++.. ..|+. .....+..++++|.++...+++.+|.++++.|+...|.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK---YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG---GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 45677778887 5555555443 2221 11221 14456788999999999999999999999999999997753
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=83.79 E-value=7 Score=31.55 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+=..|++.|+++-+...++..-.. .| .-..+++.+|..+...++|.+|.+++..|+...|.+..
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~-~P--------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY-DF--------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 4556789999999999998865432 13 22457889999999999999999999999999997763
No 112
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=83.50 E-value=14 Score=35.45 Aligned_cols=95 Identities=13% Similarity=-0.026 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHh-hc--cCCCCCCCCCccchhhhhhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI-ET--ARIFDFEEFPKRDKVTYMYYT 222 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i-~~--~~~p~~~~~~~~~~v~y~YY~ 222 (328)
..++|.....++......- +.....+.-..|.|..+|...|+++-|..+.+.. +. ..+++ .-.+..+-++-+
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nL 388 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV----YSLNVASMWLKL 388 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHH
Confidence 4566666666666543322 2457889999999999999999999888877633 21 11222 234677778899
Q ss_pred hHHhhhhcChHHHHHHHHHHHHh
Q 020262 223 GRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
|.+|..+++|.+|...+..|+..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999964
No 113
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=83.41 E-value=1.7 Score=34.94 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=23.8
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
|..+-++-+|..+.-+|+|.+|.++++.|+...|.+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~ 39 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV 39 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3445556667777777777777777777777666543
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.16 E-value=4 Score=31.36 Aligned_cols=63 Identities=13% Similarity=0.020 Sum_probs=49.8
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+=..|++.|+++-+-..++ +++- .|. -+.+++.+|.+++..++|.+|.++++.|+...|...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~--------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPS--------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 45567899999999988776 4442 132 256788999999999999999999999999887554
No 115
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=83.11 E-value=11 Score=33.44 Aligned_cols=30 Identities=17% Similarity=-0.066 Sum_probs=14.6
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
.++.+|.++...+++.+|.+++..|+...|
T Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 287 SRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344445555555555555555555554444
No 116
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.02 E-value=9.5 Score=33.58 Aligned_cols=101 Identities=9% Similarity=-0.088 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|.....++......++. ........+.+-.+|.++|+++-+-..++..-.. .|.. ....-....+++-+|.++
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~-~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGN-RLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSC-TTTGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcC-CcccHHHHHHHHHHHHHH
Confidence 345666666666655544322 2333445667788999999999999888755432 1221 011112233667789999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.-.+++.+|.++++.|+...|...
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC-----
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999888544
No 117
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.93 E-value=2.5 Score=33.95 Aligned_cols=64 Identities=11% Similarity=-0.095 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+-.+|+++|+++-+-..++..-.. .|. ....++.+|.++...+++.+|.++++.|+..-|.+
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTISI-KPG--------FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHh-cch--------hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 34567899999999998887754322 131 24568899999999999999999999999886643
No 118
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=82.85 E-value=14 Score=32.59 Aligned_cols=89 Identities=8% Similarity=-0.065 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|...+.++....-.+ .. ..+.+.+-.+|.+.|+++-+...++..-.. .|. ....++.+|.++.
T Consensus 197 ~~~A~~~~~~a~~~~p~~--~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~l~~~~~ 262 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTS--ID---PDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPN--------DYLLWNKLGATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHSTTS--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCc--cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcC--------CHHHHHHHHHHHH
Confidence 445555555554432221 01 223446778899999999999888754322 121 1456789999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcCc
Q 020262 228 FNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..+++.+|.+.++.|+...|...
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999988654
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=82.56 E-value=16 Score=31.46 Aligned_cols=89 Identities=11% Similarity=-0.015 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
...++|.+.+.++....-.+ . .....+-.+|.+.|+++-+...++..-.. .|. ....++.+|.+
T Consensus 152 ~~~~~A~~~~~~~~~~~~~~----~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~l~~~ 215 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPND----A---QLHASLGVLYNLSNNYDSAAANLRRAVEL-RPD--------DAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHH
Confidence 35566666666665543322 1 23445667889999999998888755432 121 23567889999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...+++.+|.+.++.|+...|.+.
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999988654
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=82.39 E-value=1.9 Score=34.28 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=33.8
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+.....|.+|++|+-.++|.+|.++++.|+...|.+..
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~ 66 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK 66 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 345556789999999999999999999999999997753
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=82.29 E-value=26 Score=31.02 Aligned_cols=86 Identities=10% Similarity=-0.110 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|...+.++....-++ . ...+.+-.+|.+.|+++-+...++..-.. .|. ....++.+|.++.
T Consensus 229 ~~~A~~~~~~al~~~p~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPED----Y---SLWNRLGATLANGDRSEEAVEAYTRALEI-QPG--------FIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC--------chHHHHHHHHHHH
Confidence 445555555554442221 1 23456777888899998888887754322 122 1566788899999
Q ss_pred hhcChHHHHHHHHHHHHhcCcC
Q 020262 228 FNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+++.+|.+++..|+..+|..
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999888764
No 122
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=82.02 E-value=16 Score=35.68 Aligned_cols=95 Identities=6% Similarity=-0.058 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc--CCCCCCCCCccchhhhhhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGK-GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA--RIFDFEEFPKRDKVTYMYYT 222 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D-~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~--~~p~~~~~~~~~~v~y~YY~ 222 (328)
+.++|.....++......- +.....+....|.|..+|...|+++-|..+.+. ++.. .+++ .-.+..+-++-+
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~----~Hp~~a~~l~nL 399 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH----NNAQLGMAVMRA 399 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT----TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 4455555555555443221 235788999999999999999999999887763 3221 1222 234677888899
Q ss_pred hHHhhhhcChHHHHHHHHHHHHh
Q 020262 223 GRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 223 Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
|.+|..+|+|.+|...+..|+..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999963
No 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=81.56 E-value=14 Score=30.04 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCcc--------chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhc
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKR--------DKVTYMYYTGRLEVFNENFPAADQKLSYALINC 246 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~--------~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 246 (328)
....+-..|++.|+++.+...++..-.. .|....+... -.+..++.+|..++..++|.+|.++++.|+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDF-FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3445667889999999998888754322 1221111100 024788899999999999999999999999998
Q ss_pred CcCc
Q 020262 247 NPQS 250 (328)
Q Consensus 247 ~~~~ 250 (328)
|...
T Consensus 119 p~~~ 122 (198)
T 2fbn_A 119 KNNV 122 (198)
T ss_dssp TTCH
T ss_pred cccH
Confidence 8654
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=81.44 E-value=4.6 Score=33.01 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
....+-.+|++.|+++-+...++..-.. .|. .+..++.+|.++.-.++|.+|.++++.|+..+|.+.
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINR-DKH--------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 4456777899999999998887754322 121 246678999999999999999999999999988654
No 125
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=81.32 E-value=7.1 Score=29.06 Aligned_cols=75 Identities=13% Similarity=0.048 Sum_probs=54.9
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc--hHHH
Q 020262 178 QLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANI 254 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~n~ 254 (328)
.+=+.+++.+.+..|..-++. ++... ++ ..+.......++++|..+.-.+++.+|..++..|+..-|.+. ..|+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~-~~--~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLD-EG--EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-TT--CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhh-cc--CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 345678899999999887764 33211 11 112345667779999999999999999999999999988764 3455
Q ss_pred H
Q 020262 255 R 255 (328)
Q Consensus 255 ~ 255 (328)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 5
No 126
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.00 E-value=7.9 Score=34.43 Aligned_cols=99 Identities=9% Similarity=0.034 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++......++ .........+.+-.+|.++|+++-+-..++..-.. .|... .......+.+-.|.++
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~--~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM-YKEME--NYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTT--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcC--ChhHHHHHHHHHHHHH
Confidence 45666666777666554432 23444556677888999999999998877744221 11111 1223445677778888
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+..+++.+|.++++.|+ ..|...
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHcCCHHHHHHHHHHHh-CCCCCC
Confidence 88899999999999999 887544
No 127
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=80.40 E-value=20 Score=31.06 Aligned_cols=67 Identities=12% Similarity=-0.173 Sum_probs=51.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+-.+|++.|+++-+...++..-.. .|. ........++.+|.++...+++.+|.+.++.|+...|.+.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~-~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT-EPS----VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CCS----SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCC----chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 467799999999999988865433 232 1223335577899999999999999999999999988664
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=80.05 E-value=9.3 Score=29.19 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|.....++....-.+ .. ..+.+-.+|+++|+++-|-..++ +++-. |.. .........-++-+|..
T Consensus 23 ~~~~A~~~y~~Al~~~p~~----~~---~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 23 DFEKAHVHYDKAIELDPSN----IT---FYNNKAAVYFEEKKFAECVQFCEKAVEVG--RET-RADYKLIAKAMSRAGNA 92 (127)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-TCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC----HH---HHHhHHHHHHHhhhHHHHHHHHHHHHHhC--ccc-chhhHHHHHHHHHHHHH
Confidence 4667777777665542221 22 23456678999999999877665 44422 210 11122344556779999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
+.-.++|.+|.++++.|+...|.
T Consensus 93 ~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999999999999999998774
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.85 E-value=3.9 Score=29.94 Aligned_cols=37 Identities=8% Similarity=-0.121 Sum_probs=32.6
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
-...+|.+|..++..++|.+|.++++.|+...|....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 42 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3467899999999999999999999999999887653
No 130
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.59 E-value=3.8 Score=28.34 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=32.5
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.....++.+|..+...++|.+|..++..|+...|.+.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 43 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 43 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3456788999999999999999999999999988654
No 131
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=78.77 E-value=13 Score=34.87 Aligned_cols=61 Identities=7% Similarity=-0.190 Sum_probs=28.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.+-.+|+..|+++.+...++..-.. .| . ....+.+|.++...+++.+|.+.+..|+...|.
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~-~~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 308 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL-HP------T---PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CC------C---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc-CC------C---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC
Confidence 3444555566665555555533221 01 1 233444455544445555555555555544443
No 132
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=78.75 E-value=2 Score=32.24 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=39.8
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc--hHHHHHHHHHHHHHHhhcCCCC
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQS--EANIRMILKYLIPVKLSIGILP 272 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~n~~~IL~~LIpv~LllG~~P 272 (328)
=+|-+|+.++-+++|..|..++..|+..-+... .-.+..|+..|.-+-.-+|.+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~ 63 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH
Confidence 468899999999999999999999998754332 1234566666665555566543
No 133
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=78.12 E-value=21 Score=30.65 Aligned_cols=86 Identities=12% Similarity=-0.055 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhh
Q 020262 148 LKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEV 227 (328)
Q Consensus 148 le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~ 227 (328)
.++|...+.++....-.+ . .....+-.+|++.|+++.+...++..-.. .|. ....++.+|.++.
T Consensus 188 ~~~A~~~~~~~~~~~~~~----~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDD----A---QLWNKLGATLANGNRPQEALDAYNRALDI-NPG--------YVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc----H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHH
Confidence 445555555554442221 1 23456778899999999999888765332 121 2346788999999
Q ss_pred hhcChHHHHHHHHHHHHhcCcC
Q 020262 228 FNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 228 ~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+++.+|.+.++.|+...|..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTS
T ss_pred HhccHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999988863
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=78.05 E-value=22 Score=34.11 Aligned_cols=89 Identities=8% Similarity=-0.050 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
...++|...+.++....-.+ . ...+.+-.+|+++|+++.|...++..-.. .| +....+|.+|..
T Consensus 20 g~~~~A~~~~~~Al~~~p~~----~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p--------~~~~~~~~lg~~ 83 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSN----A---IYYGNRSLAYLRTECYGYALGDATRAIEL-DK--------KYIKGYYRRAAS 83 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----H---HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CT--------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc----H---HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHH
Confidence 35677777777776653221 2 23345667899999999998877744322 12 224578899999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...++|.+|.+.++.|+...|.+.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999988665
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=77.54 E-value=15 Score=33.29 Aligned_cols=77 Identities=14% Similarity=0.031 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCC-------ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
....+.+-..|++.|+++.|...++..-.. .|....+. ....+..++.+|.+++..++|.+|.++++.|+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334456667889999999998887744322 23211111 1123688899999999999999999999999999
Q ss_pred cCcCc
Q 020262 246 CNPQS 250 (328)
Q Consensus 246 c~~~~ 250 (328)
.|.+.
T Consensus 226 ~p~~~ 230 (336)
T 1p5q_A 226 DSNNE 230 (336)
T ss_dssp CTTCH
T ss_pred CCCcH
Confidence 98765
No 136
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=77.16 E-value=11 Score=33.60 Aligned_cols=91 Identities=10% Similarity=-0.040 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
...++|...+.++....-.. .... ..+.+-.+|.+.|+++-+...++..-.. .|. ....++.+|.+
T Consensus 191 g~~~~A~~~~~~al~~~p~~--~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~ 256 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDM--IDPD---LQTGLGVLFHLSGEFNRAIDAFNAALTV-RPE--------DYSLWNRLGAT 256 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSS--CCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCc--cCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHH
Confidence 34566666666665542220 0122 2335667888899999988888754322 121 14467888999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+...+++.+|.+++..|+...|...
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCch
Confidence 9999999999999999999888664
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=76.75 E-value=11 Score=28.60 Aligned_cols=87 Identities=14% Similarity=-0.099 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...--+ ....++ .+-.+|.+.|+++.+...++..-.. -|. ....++.+|.++
T Consensus 32 ~~~~A~~~~~~al~~~P~----~~~a~~---~lg~~~~~~g~~~~A~~~~~~al~l-~P~--------~~~~~~~la~~~ 95 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPE----REEAWR---SLGLTQAENEKDGLAIIALNHARML-DPK--------DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHHHHHSTT----CHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCC----CHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHH
Confidence 445556665555443222 233333 4566788999999998877744322 132 234679999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|..++..|+..-|..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999877743
No 138
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=76.21 E-value=27 Score=33.34 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=60.0
Q ss_pred CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhc---cCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 020262 167 SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET---ARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (328)
Q Consensus 167 sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~---~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (328)
.....+.-..|.|..+|...|+++-|..+.+..-. ..+|+ .-.+..+-++-+|.+|..+++|.+|...+..|+
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45788999999999999999999988877763321 11332 234677788889999999999999999999999
Q ss_pred Hh
Q 020262 244 IN 245 (328)
Q Consensus 244 ~~ 245 (328)
..
T Consensus 399 ~i 400 (429)
T 3qwp_A 399 DI 400 (429)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 139
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=75.98 E-value=9 Score=32.23 Aligned_cols=64 Identities=8% Similarity=-0.089 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-.+|++.|+++-+...++..-.. .|. .. .+..+.+ +...++++.+|...+..++...|.+..
T Consensus 116 ~la~~~~~~g~~~~A~~~~~~a~~~-~~~------~~--~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (275)
T 1xnf_A 116 NRGIALYYGGRDKLAQDDLLAFYQD-DPN------DP--FRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQW 179 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTT------CH--HHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CCC------Ch--HHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchH
Confidence 4457899999999999888765432 122 11 2223333 446779999999999999999887653
No 140
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=75.43 E-value=13 Score=34.00 Aligned_cols=64 Identities=14% Similarity=-0.052 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
+.+-..|++.|+++-+..+++.+-.. .|. .+..++.+|..++..+++.+|.+.+..|+...|..
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 93 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDG-DPD--------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34445566666666666665543321 111 14455556666666666666666666666665544
No 141
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=75.08 E-value=4.9 Score=29.98 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=34.2
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+.+..++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 45678899999999999999999999999999988764
No 142
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=74.35 E-value=29 Score=28.79 Aligned_cols=87 Identities=16% Similarity=-0.003 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++...--+ ....+ ..+-.+|.+.|+++-+...++..-... +....++.+|.++
T Consensus 99 ~~~~A~~~~~~al~~~P~----~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~----------~~~~~~~~la~~~ 161 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPR----YAPLH---LQRGLVYALLGERDKAEASLKQALALE----------DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHHHHHHHHHHHCTT----CHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHC----------CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcc----cHHHH---HHHHHHHHHcCChHHHHHHHHHHHhcc----------cchHHHHHHHHHH
Confidence 455666666555443211 12222 356678999999999988887543221 2355678999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 227 VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+++.+|.+.++.|+..-|.+.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999988664
No 143
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=74.12 E-value=19 Score=29.96 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-..|++.|+++-+...++..-.. -| +....++.+|.++.-.+++.+|...++.|+...|.+.
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKE-NP--------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-SS--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 4566789999999999888754322 12 2356788999999999999999999999999999775
No 144
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=73.95 E-value=30 Score=30.96 Aligned_cols=62 Identities=11% Similarity=-0.127 Sum_probs=30.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
+-.+|++.++++-+...++..-.. .| ..+..++.+|..+.-.+++.+|.+.++.|+...|..
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQ-NP--------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CC--------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch
Confidence 334455555555555554432211 11 123345555555555555555555555555555543
No 145
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=73.53 E-value=29 Score=30.62 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCchH
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEA 252 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 252 (328)
..++...+.++...|+++-+..+++.+-.. .|+ ....++-+|..++-.+++.+|.+.|..|+..-|.+..-
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~--------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSP--------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 334444555566667888888777755432 231 35567778999999999999999999999998866533
Q ss_pred HHHHHHHHHHHHHhhcCCCCC--hHhhcc
Q 020262 253 NIRMILKYLIPVKLSIGILPK--DWLLEK 279 (328)
Q Consensus 253 n~~~IL~~LIpv~LllG~~P~--~~ll~~ 279 (328)
+..++-+...+|+.+. ..++++
T Consensus 237 -----l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 237 -----LINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp -----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4444555556888654 245544
No 146
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=73.53 E-value=38 Score=28.11 Aligned_cols=65 Identities=6% Similarity=-0.062 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccc-hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRD-KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~-~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+-.+|++.|++.-+...++.+-.. .| .+. ...-+|++|..+.-.+++.+|.+.+..+....|.+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~-~p------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD-YP------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-ST------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH-Cc------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 3457899999999999888865432 23 332 33678999999999999999999999988887754
No 147
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=73.35 E-value=20 Score=33.17 Aligned_cols=72 Identities=11% Similarity=-0.171 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh---hcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF---NENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~---~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++-+...++..-.. .|. .......+..++.+|.++.. .+++.+|.+.+..|+...|...
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIEL-ENK--LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HHT--SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-hhc--cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 345677899999999998888755332 122 11223345688999999999 9999999999999999887654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=72.82 E-value=18 Score=28.56 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH-hhhhcCh--HHHHHHHHHHHHhcCcCc
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL-EVFNENF--PAADQKLSYALINCNPQS 250 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~-~~~~~~~--~~A~~~L~~A~~~c~~~~ 250 (328)
..+-.+|+..|+++.+...++..-.. .|. -....+.+|.+ +...+++ .+|...+..|+...|.+.
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 115 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQL-RGE--------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-HCS--------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence 45667899999999999888754332 132 14577889999 7888999 999999999999988654
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=72.68 E-value=13 Score=29.21 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccC-CCCCCC--CC-----ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIR-SIETAR-IFDFEE--FP-----KRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik-~i~~~~-~p~~~~--~~-----~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
...=..||+.|+++.+-..+. +++... .+..+. -+ ....+..++.+|..++-.++|.+|..+++.|+...|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 344556788888888876665 333200 000000 01 345667889999999999999999999999999988
Q ss_pred cCch
Q 020262 248 PQSE 251 (328)
Q Consensus 248 ~~~~ 251 (328)
....
T Consensus 95 ~~~~ 98 (162)
T 3rkv_A 95 TNEK 98 (162)
T ss_dssp TCHH
T ss_pred cchH
Confidence 7653
No 150
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=72.60 E-value=18 Score=33.50 Aligned_cols=64 Identities=9% Similarity=-0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 174 YLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
.....+-.+|++.|+++-+...++..-.. .| . ...++.+|.++...+++.+|.+.+..|+...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~------~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 301 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIEL-FP------R---VNSYIYMALIMADRNDSTEYYNYFDKALKLDS 301 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH-CC------C---HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-Cc------c---HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc
Confidence 33445555566666666666555533211 01 1 33344444444444444444444444444444
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=72.36 E-value=7.9 Score=34.17 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
..++|...+.++....-. ... +...+-.+|.++|+++-+...++..-.. .| +-+..+|.+|..+
T Consensus 19 ~~~~A~~~~~~al~~~p~----~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 19 KYPEAAACYGRAITRNPL----VAV---YYTNRALCYLKMQQPEQALADCRRALEL-DG--------QSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHHCSC----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTS-CT--------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc----cHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHH
Confidence 445555666555543222 122 2335667899999999998887754322 12 2346788999999
Q ss_pred hhhcChHHHHHHHHHHHHhcCcC
Q 020262 227 VFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+++.+|...++.|+...|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998855
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=71.79 E-value=12 Score=34.64 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhhCCC--CchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhH
Q 020262 147 KLKAAGSFLMKVFGVLAGKG--SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~--sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
..++|.+.+.++......+. .-.......-+.+-.+|+++|+++-+...+..+.... |.+......+...-+...|.
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~-~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC-EKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCSSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-HhcccccchhhHHHHHHHHH
Confidence 34555555555544433221 1122233344567889999999999988776443210 11111112233344455564
Q ss_pred Hh--hhhcChHHHHHHHHHHHHhcCcCc
Q 020262 225 LE--VFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 225 ~~--~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+ +-.++|.+|.++++.|+...|.+.
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 44 445789999999999999998764
No 153
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=71.02 E-value=35 Score=30.40 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCc-hhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSK-RVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sK-k~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..++|...+.+........... ..+.....+.+-.+|...|+++-+...+...-.. .|.. ...+.+..++.+|++
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSY---QPQQQLQCLAMLIQC 183 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTS---CGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hhcc---CcHHHHHHHHHHHHH
Confidence 3455555666665554322111 1344455566778999999999999887743221 1221 112355667789999
Q ss_pred hhhhcChHHHHHHHHHHHHhcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
+...+++.+|..++..|....+.
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987654
No 154
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=70.86 E-value=3.8 Score=34.07 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=33.4
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
++..+.||+|.-++-.+||.+|.+++..+++.=|.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 567899999999999999999999999999998855
No 155
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=69.41 E-value=16 Score=30.31 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhh----------------hhHHhhhhcChHHHHHHHHHHHH
Q 020262 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYY----------------TGRLEVFNENFPAADQKLSYALI 244 (328)
Q Consensus 181 kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY----------------~Gr~~~~~~~~~~A~~~L~~A~~ 244 (328)
..+++.|+++.+...++..-.. .| +....+|+ +|..+.-.++|.+|..+++.|+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL-NI--------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CH--------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CC--------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677889999888877754322 12 12234556 99999999999999999999999
Q ss_pred hcCcCc
Q 020262 245 NCNPQS 250 (328)
Q Consensus 245 ~c~~~~ 250 (328)
..|.+.
T Consensus 83 ~~p~~~ 88 (208)
T 3urz_A 83 KAPNNV 88 (208)
T ss_dssp HCTTCH
T ss_pred HCCCCH
Confidence 999765
No 156
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=69.15 E-value=9.6 Score=27.16 Aligned_cols=35 Identities=6% Similarity=-0.121 Sum_probs=30.8
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+.-++.+|..++..++|.+|.++++.|+...|.+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 38 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP 38 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 34567899999999999999999999999988764
No 157
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=68.40 E-value=24 Score=31.71 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+.+-.+|.+.|+++.+...++..-.. .|. ...-++.+|..+.-.+++.+|.+.++.|+..+|.+.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL-QPH--------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-CSS--------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 346678899999999998888755332 121 123467889999999999999999999999998765
No 158
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=68.40 E-value=50 Score=31.36 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=55.3
Q ss_pred HHhhhCCCCchhHHHHHHHHHHHHHHhcCCh-hhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHH
Q 020262 159 FGVLAGKGSKRVGALYLTCQLFKIYFKLGTV-HLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237 (328)
Q Consensus 159 f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~-~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~ 237 (328)
+..+..+.......++ .+-++|+..|++ +-|...++..-.. .|. ....++.+|.++...+++.+|.+
T Consensus 91 l~~~~~~~~~~a~~~~---~lg~~~~~~g~~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 91 MEEVLGSAQVEAQALM---LKGKALNVTPDYSPEAEVLLSKAVKL-EPE--------LVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHTTCCCCHHHHH---HHHHHHTSSSSCCHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhccCchhHHHHH---HHHHHHHhccccHHHHHHHHHHHHhh-CCC--------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344443333344443 455778999999 8888877744322 121 24578999999999999999999
Q ss_pred HHHHHHHhcCc
Q 020262 238 KLSYALINCNP 248 (328)
Q Consensus 238 ~L~~A~~~c~~ 248 (328)
++..|+...|.
T Consensus 159 ~~~~al~~~p~ 169 (474)
T 4abn_A 159 CFSGALTHCKN 169 (474)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHhhCCC
Confidence 99999999886
No 159
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=67.26 E-value=11 Score=27.71 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=31.3
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+|.+|.++...+++.+|...+..|+...|...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 53 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS 53 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence 45788999999999999999999999999988654
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=67.06 E-value=6.7 Score=35.83 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+.+-.+|+++|+++.|...++..-.. .| +.+..+|.+|+.++..++|.+|.++|..|+...|.+.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTE-EE--------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 346677899999999998777644222 12 2356789999999999999999999999998887543
No 161
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=65.34 E-value=20 Score=36.15 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 251 (328)
.+-.+|++.|+++.+...++..-.. .|. -...+|++|..+...++|.+|.++++.|+..-|.+..
T Consensus 438 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 438 MEVRALLDLGDVAKATRKLDDLAER-VGW--------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HCC--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcc-Ccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 5567889999999999888754332 132 2567899999999999999999999999999997753
No 162
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=65.12 E-value=52 Score=31.69 Aligned_cols=31 Identities=13% Similarity=-0.091 Sum_probs=15.9
Q ss_pred hhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 218 YMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 218 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.++.+|..+...+++.+|.++++.|+...|.
T Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444555555555555555555555555443
No 163
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=64.46 E-value=6 Score=28.76 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.4
Q ss_pred hhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 222 TGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 222 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+|.-.+-++++.+|-.||..|+.-||+..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 57777889999999999999999999654
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=64.45 E-value=32 Score=32.69 Aligned_cols=78 Identities=10% Similarity=-0.087 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCC-------ccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 173 LYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFP-------KRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~-------~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
....+.+=..|++.|+++.|...++..-.. .|....+. ....+..++.+|..++..++|.+|.++++.|+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 334456667899999999998877743221 13211111 1233688899999999999999999999999999
Q ss_pred cCcCch
Q 020262 246 CNPQSE 251 (328)
Q Consensus 246 c~~~~~ 251 (328)
-|.+..
T Consensus 347 ~p~~~~ 352 (457)
T 1kt0_A 347 DSANEK 352 (457)
T ss_dssp STTCHH
T ss_pred CCccHH
Confidence 887643
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=61.75 E-value=28 Score=30.45 Aligned_cols=64 Identities=9% Similarity=-0.215 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+-..|++.|+++-+...++..-.. .|. ...+++.+|..+.-.++|.+|.+.++.|+..-|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~-~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITR-NPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 4556789999999999888754322 121 357889999999999999999999999999888654
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.43 E-value=41 Score=32.42 Aligned_cols=66 Identities=11% Similarity=-0.040 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++.+...++..-.. .| +....++.+|.++...+++.+|.++++.|+...|.+.
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLAL-HP--------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT-ST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 345667888999999999888754322 12 1256788999999999999999999999999988764
No 167
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=59.34 E-value=6.6 Score=29.13 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=30.7
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
-++=.+++|..++.+++|.+|..+++..+..-|.
T Consensus 42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 42 NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566788899999999999999999999999887
No 168
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=57.68 E-value=13 Score=31.34 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 208 ~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
+.++..+..+-.+|.|-..+-+++|..|...+..|+..|-
T Consensus 55 ~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 55 ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999998764
No 169
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=56.40 E-value=42 Score=31.30 Aligned_cols=34 Identities=6% Similarity=-0.179 Sum_probs=19.2
Q ss_pred hhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 217 TYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 217 ~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
..++++|.++...++|.+|...++.|+..-|.+.
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 3455555555555666666666666665555443
No 170
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=56.28 E-value=38 Score=34.78 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+.|=.+|.+.|+++-|...++. ++- .|+ ....++.+|.++...+++.+|.++++.|++..|...
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEV--FPE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 34556677888888888777663 332 122 234567778888888888888888888888777654
No 171
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=55.65 E-value=88 Score=31.96 Aligned_cols=62 Identities=11% Similarity=-0.081 Sum_probs=32.3
Q ss_pred HHHHHHHhcCChhhHHHHHH-HhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIR-SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik-~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+-.+|.++|+++.+...++ +++- .|. ...-++.+|.++...+++.+|.++++.|++..|..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l--~P~--------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQI--NPA--------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34445555666665555444 2221 121 12345556666666666666666666666665544
No 172
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=53.13 E-value=11 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.271 Sum_probs=29.9
Q ss_pred Cccchhhhhhh-----hhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 211 PKRDKVTYMYY-----TGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 211 ~~~~~v~y~YY-----~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
|..+...=.|| +|.-.+-++++..|-.||..|+.-||+.
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 44444444555 4666788999999999999999999964
No 173
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=53.11 E-value=1.4e+02 Score=27.52 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
...+-.+|++.|+++.+...++..-.. .|. ....++.+|.++...+++.+|.+.+..|+...|.+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 378 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSL-NPE--------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP 378 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 345567788888888888877755432 121 124567788888888888888888888888877665
No 174
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=51.69 E-value=90 Score=25.97 Aligned_cols=96 Identities=10% Similarity=-0.017 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHH
Q 020262 146 EKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRL 225 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~ 225 (328)
..|++.-++..+++...-.+..+.|--|..+=.=+-.+..+++++-|+.+++..-+. -..| ....---+.+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~----hKkF-----AKiwi~~AqF 103 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN----CKKF-----AFVHISFAQF 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH----CTTB-----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hHHH-----HHHHHHHHHH
Confidence 345555566666666554443444555544444444567889999999999976432 1233 2333333555
Q ss_pred hhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 226 EVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 226 ~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-.-|++...|.+-|..|+..||+..
T Consensus 104 EiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 104 ELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHcccHHHHHHHHHHHhccCCCcH
Confidence 5679999999999999999999764
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=50.05 E-value=29 Score=24.21 Aligned_cols=32 Identities=16% Similarity=-0.099 Sum_probs=28.2
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.|-.|..++..++|.+|.+.++.|+...|.+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 35678999999999999999999999988664
No 176
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=47.88 E-value=18 Score=28.96 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=33.8
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.++-.|.||+|.-+.--++|.+|..++...++.=|.+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3678899999999999999999999999999998854
No 177
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=45.49 E-value=71 Score=29.66 Aligned_cols=72 Identities=8% Similarity=-0.181 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCch--HHH
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE--ANI 254 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~--~n~ 254 (328)
+.+-.+|.++|+++-+-..++..-.. -| . -..-++++|.++...+++.+|.++++.|+..-|.+.. .++
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~l-dP------~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQ-DA------K--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHH-CT------T--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh-Cc------c--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34445666777777666655533211 12 1 2345789999999999999999999999999887653 344
Q ss_pred HHH
Q 020262 255 RMI 257 (328)
Q Consensus 255 ~~I 257 (328)
..+
T Consensus 241 g~~ 243 (382)
T 2h6f_A 241 YFV 243 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=45.12 E-value=87 Score=28.75 Aligned_cols=74 Identities=8% Similarity=-0.021 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhccCCCC------CCC--CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRSIETARIFD------FEE--FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~------~~~--~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
...+=..|++.|+++.|...++..-.. .|. .+. -........++.+|..++..++|.+|.++++.|+...|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRY-VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH-hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345556788899998887766633210 000 000 01234567888999999999999999999999999988
Q ss_pred cCc
Q 020262 248 PQS 250 (328)
Q Consensus 248 ~~~ 250 (328)
.+.
T Consensus 305 ~~~ 307 (370)
T 1ihg_A 305 SNT 307 (370)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
No 179
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=44.95 E-value=64 Score=27.15 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=30.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh----hcChHHHHHHHHHHHHh
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALIN 245 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~----~~~~~~A~~~L~~A~~~ 245 (328)
+=.+|++.++++.+...++..-. |. ...-.|.+|.++.. .+++.+|.+++..|...
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~---~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACD---LK--------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---TT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---CC--------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 34456666666666665553321 10 01234556666666 66666666666666654
No 180
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.47 E-value=87 Score=27.41 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+-.+|.+.|+++-+-..++. | .-...++-+|.+++..+++.+|.+.|..+....|..
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~------~--------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQ------G--------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT------C--------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHhC------C--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 334566777777777666543 1 223355667777777777777777777777776654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=43.38 E-value=44 Score=32.02 Aligned_cols=60 Identities=12% Similarity=-0.091 Sum_probs=46.6
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 182 iYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.|++.|+++-|...++..-.. .|. ....++.+|..+...++|.+|.+.++.|+..-|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPS--------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 467788888888777643221 122 267889999999999999999999999999988654
No 182
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=42.97 E-value=17 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=22.9
Q ss_pred HhhhCC--CCchhHHH-HHHHHHHHHHHhcC
Q 020262 160 GVLAGK--GSKRVGAL-YLTCQLFKIYFKLG 187 (328)
Q Consensus 160 ~~~~~D--~sKk~g~~-~l~n~l~kiYfkl~ 187 (328)
..|..| ++-||||| .++-.|+|.|.|+.
T Consensus 10 eicktdgipnikwgmyiafgekllksylkmk 40 (82)
T 3fbl_A 10 EICKTDGIPNIKWGMYIAFGEKLLKSYLKMK 40 (82)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 357778 48899998 57889999999974
No 183
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=40.96 E-value=39 Score=26.71 Aligned_cols=34 Identities=9% Similarity=-0.329 Sum_probs=30.6
Q ss_pred hhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 216 v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
...+|.+|.++...+++.+|..++..+++.-|..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 4677899999999999999999999999998854
No 184
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=39.57 E-value=91 Score=24.43 Aligned_cols=61 Identities=11% Similarity=-0.053 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
.+-.+|.+.|+++-+...++.+-.. -| ......-++.+|.++...+++.+|..++..|+..
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~-~p------~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKV-NL------GAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CT------TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh-Cc------ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 5566789999999999888755322 13 2222345678899999999999999999988854
No 185
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=38.20 E-value=40 Score=30.87 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=36.3
Q ss_pred hhhhHHhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhh-cCCCCChHhhccc
Q 020262 220 YYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS-IGILPKDWLLEKY 280 (328)
Q Consensus 220 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~Ll-lG~~P~~~ll~~~ 280 (328)
|=.|+.++.++++-+|+++...|+.+ +.- ..+. .|.+|+..+|.+-
T Consensus 134 y~~~K~~l~~~~~ldAY~~vi~aLhh------------~Ar---L~vie~G~~pe~tvw~qv 180 (290)
T 3c18_A 134 FQDGRNLFSRGNYYDAYTHVHHALHH------------LAR---LSVLEKGAHPEVVVWEQA 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHH---HHHHHTTCCCCTTHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHH------------HHH---hheeccCCcCchhHHHHH
Confidence 34588889999999999999999988 111 2233 6999999999984
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=37.72 E-value=27 Score=32.21 Aligned_cols=68 Identities=9% Similarity=-0.020 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhhccC--CCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIR-SIETAR--IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCN 247 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik-~i~~~~--~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 247 (328)
|.|=.+|+..|+++-|-..++ +++-.. .+. . .....+.-+.-+|.+|...++|.+|.+++..|+..++
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--Q-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--G-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--c-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 677789999999998865554 443210 010 1 1122334456789999999999999999999998765
No 187
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=36.67 E-value=29 Score=28.12 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=34.1
Q ss_pred cchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 213 RDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 213 ~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.++-.|.||++.=+.--++|.+|..+....++.-|.+.
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45788999999999999999999999999999988553
No 188
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=33.21 E-value=1.3e+02 Score=25.14 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 222 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfk----l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~ 222 (328)
..++|...+.++... ++ ..+.+ .+-.+|.+ .++++.+...++..-... ...-.|.+
T Consensus 129 ~~~~A~~~~~~a~~~--~~---~~a~~----~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~l 188 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL--ND---GDGCT----ILGSLYDAGRGTPKDLKKALASYDKACDLK-----------DSPGCFNA 188 (273)
T ss_dssp CHHHHHHHHHHHHHT--TC---HHHHH----HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--Cc---HHHHH----HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHH
Confidence 455555555555432 11 22233 34456666 888888887776443211 13556889
Q ss_pred hHHhhh----hcChHHHHHHHHHHHHhcC
Q 020262 223 GRLEVF----NENFPAADQKLSYALINCN 247 (328)
Q Consensus 223 Gr~~~~----~~~~~~A~~~L~~A~~~c~ 247 (328)
|.++.. .+++.+|.++++.|...-|
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 999988 9999999999999998755
No 189
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=31.67 E-value=28 Score=20.20 Aligned_cols=17 Identities=0% Similarity=0.108 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020262 147 KLKAAGSFLMKVFGVLA 163 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~ 163 (328)
.-|.||.+|+++|+.-+
T Consensus 4 ~Ee~aA~vIQrA~R~yl 20 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34789999999998644
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=31.28 E-value=58 Score=29.34 Aligned_cols=73 Identities=11% Similarity=-0.096 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hhccCCCCCCCC---------CccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 176 TCQLFKIYFKLGTVHLCRSVIRS-IETARIFDFEEF---------PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~lik~-i~~~~~p~~~~~---------~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
...+-..|++.++++.|...++. ++. .|....+ ........++.+|..++-.++|.+|.++++.|+..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555677788888877776654 331 1210000 00011236788999999999999999999999999
Q ss_pred cCcCc
Q 020262 246 CNPQS 250 (328)
Q Consensus 246 c~~~~ 250 (328)
.|.+.
T Consensus 260 ~p~~~ 264 (338)
T 2if4_A 260 EEKNP 264 (338)
T ss_dssp CTTCH
T ss_pred CCCCH
Confidence 88664
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=29.54 E-value=1e+02 Score=25.31 Aligned_cols=34 Identities=6% Similarity=0.026 Sum_probs=30.3
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
+.....-.|..++-.++|.+|.+.++.|++..|.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 3456677899999999999999999999999997
No 192
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.04 E-value=3.9e+02 Score=25.58 Aligned_cols=118 Identities=7% Similarity=-0.017 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHh-hhCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhH
Q 020262 146 EKLKAAGSFLMKVFGV-LAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224 (328)
Q Consensus 146 ~~le~~a~~l~~~f~~-~~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr 224 (328)
..+++|-+++.++-.. +..| ...-|.+++.|.+.|+++.|..+++.+....++ .+.++|.--+.
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-------Pd~~tyn~lI~- 148 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPN-------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-------PRLRSYGPALF- 148 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-------CCHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CccceehHHHH-
Confidence 4577777776665332 1222 124578999999999999999999999876432 23455433222
Q ss_pred HhhhhcChHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcCCCCChHhhcccCccccHHHHH-HHhhCCHHHHHHH
Q 020262 225 LEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQ-ALRRGDLRLLRHA 303 (328)
Q Consensus 225 ~~~~~~~~~~A~~~L~~A~~~c~~~~~~n~~~IL~~LIpv~LllG~~P~~~ll~~~~l~~y~~l~~-avk~Gnl~~f~~~ 303 (328)
-++-.++..+|.+.+..-.. .|..|+.. .|.-++. +.+.|++.+-.+.
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~-----------------------~G~~Pd~~--------ty~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVE-----------------------SEVVPEEP--------ELAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------------------TTCCCCHH--------HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh-----------------------cCCCCCHH--------HHHHHHHHHhhCCCHHHHHHH
Confidence 12456777777765554332 24455442 2444444 3567777666666
Q ss_pred HHHhHH
Q 020262 304 LEEHED 309 (328)
Q Consensus 304 l~~~~~ 309 (328)
+++-++
T Consensus 198 l~~Mr~ 203 (501)
T 4g26_A 198 LQRLRD 203 (501)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 193
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=28.79 E-value=2.8e+02 Score=23.82 Aligned_cols=68 Identities=7% Similarity=-0.023 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 177 n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
..+...+.+.|+++-+..++...-... ..+..+......-.+.+..-.|++.+|...+..|+..+|.+
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 444556667777777776666432210 01112233344444555566677777777777777777754
No 194
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=26.95 E-value=48 Score=27.41 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=15.9
Q ss_pred hhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 219 MYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 219 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
.|.+|.++..++++.+|.++++.|...
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 455566665566666666666666543
No 195
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.76 E-value=75 Score=27.61 Aligned_cols=62 Identities=5% Similarity=-0.146 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCc
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNP 248 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 248 (328)
.+-..+.+.|+++-+...++..-.. -| . ....++-+|++++..+++.+|.+.|..|...-|.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~-~P------~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQL-SN------Q--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-TT------S--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh-CC------c--chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 4556678899999999988865432 13 2 2456899999999999999999999999888773
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=26.59 E-value=2.7e+02 Score=26.88 Aligned_cols=137 Identities=8% Similarity=0.003 Sum_probs=81.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccCCceehHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH---HHhh
Q 020262 86 RTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKV---FGVL 162 (328)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~lp~L~~~~~~l~~la~~~D~~~~~~~~~~~~le~~a~~l~~~---f~~~ 162 (328)
..+++.+|-..+.+.+....+.+.. +.-++.. .+-.+|..... . ...++|.....++ +...
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~-~Hp~~a~-------~~~nLa~~y~~----~----g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFAD-TNLYVLR-------LLSIASEVLSY----L----QAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCT-TSHHHHH-------HHHHHHHHHHH----T----TCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCC-CCHHHHH-------HHHHHHHHHHH----h----cCHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877776666653 2222222 22233322211 1 1344444444443 4455
Q ss_pred hCCCCchhHHHHHHHHHHHHHHhcCChhhHHHHHHH-hhcc--CC-CCCCCCCccchhhhhhhhhHHhhhhcChHHHHHH
Q 020262 163 AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRS-IETA--RI-FDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQK 238 (328)
Q Consensus 163 ~~D~sKk~g~~~l~n~l~kiYfkl~~~~l~~~lik~-i~~~--~~-p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~ 238 (328)
++. ....+....|.|=.+|...|+++-|..+++. ++-. .+ |+ . | +...=.=-++..++-.+.|.+|+..
T Consensus 385 lG~--~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--H-p--~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 385 YHH--NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS--H-P--ITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp SCT--TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--S-H--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--C-h--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 4788888999999999999999999988763 3211 11 21 1 1 1111113456666777889999999
Q ss_pred HHHHHHh
Q 020262 239 LSYALIN 245 (328)
Q Consensus 239 L~~A~~~ 245 (328)
+..|-..
T Consensus 458 ~~~~~~~ 464 (490)
T 3n71_A 458 YHKMREA 464 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888543
No 197
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=26.40 E-value=2.4e+02 Score=28.05 Aligned_cols=62 Identities=3% Similarity=-0.132 Sum_probs=38.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcCc
Q 020262 179 LFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 179 l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
+=.+|.+.|+++.|...++..-.. .|. -...++.+|.++...++|.+ .++++.|+..-|.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l-~P~--------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~ 534 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDT-FPG--------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVI 534 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-STT--------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCC--------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchH
Confidence 334567777777777666543221 121 13455677777777777777 777777777766554
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=25.98 E-value=1.4e+02 Score=26.86 Aligned_cols=57 Identities=14% Similarity=-0.075 Sum_probs=43.3
Q ss_pred HHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 182 iYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
+|++.+.++-+...++.... .| +.-....-+||+|..+.-.+++.+|..+|+.|...
T Consensus 144 l~~~~~r~~dA~~~l~~a~~--~~-----d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGK--WP-----DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGG--CS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHhhc--cC-----CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 89999999999988863221 11 11123456899999999999999999999999843
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=25.63 E-value=2.5e+02 Score=22.91 Aligned_cols=75 Identities=13% Similarity=-0.079 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHH-Hhhcc-CCCCCCC-CCccchhhhhhhhhHHhhhhcChHHHHHHHHHHHHh
Q 020262 171 GALYLTCQLFKIYFKLGTVHLCRSVIR-SIETA-RIFDFEE-FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245 (328)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~lik-~i~~~-~~p~~~~-~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 245 (328)
+.-......=..+|+.|+++-+-.-.+ +++-. +.|+-+. .........++-.|..+.-.++|.+|.+.++.|+..
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444555667888999988876655 44422 1222110 001112337788899999999999999999999998
No 200
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.58 E-value=77 Score=25.89 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=33.1
Q ss_pred chhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 214 DKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 214 ~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
++-.|.||++.=+.--+||.+|..+....++.-|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 577899999999999999999999999999998854
No 201
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=24.06 E-value=1.1e+02 Score=26.46 Aligned_cols=35 Identities=9% Similarity=-0.301 Sum_probs=29.3
Q ss_pred hhhhhhhhhHHhhhhcChHHHHHHHHHHHHhcCcC
Q 020262 215 KVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 215 ~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 249 (328)
-...+|-+|..+...+++.+|.+.|..+++.-|..
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 34567888999999999999999999999887755
No 202
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=23.65 E-value=47 Score=19.95 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 020262 147 KLKAAGSFLMKVFGVLA 163 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~ 163 (328)
.=|.||.+|+++|+.=+
T Consensus 4 ~Ee~aA~vIQrA~R~yl 20 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHL 20 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34789999999998643
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.03 E-value=47 Score=25.64 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=39.8
Q ss_pred HHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh----hcChHHHHHHHHHHHHhcCcCc
Q 020262 181 KIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF----NENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 181 kiYfk----l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~----~~~~~~A~~~L~~A~~~c~~~~ 250 (328)
.+|.. -+++..+...++.--... -..=.|.+|.+|.. ..|+.+|.++++.|...-+..+
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A 131 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGLN-----------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHH
Confidence 44555 567777766665332111 12235788988887 9999999999999998755443
No 204
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.43 E-value=3e+02 Score=25.90 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHH--HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHh
Q 020262 149 KAAGSFLMKVFGVLAGKGSKRVGALY--LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLE 226 (328)
Q Consensus 149 e~~a~~l~~~f~~~~~D~sKk~g~~~--l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~ 226 (328)
+.-.++..+++.-|.++ ||+ .+- +=..|.+.|+..|++.-|-.+++.+... ...++ .+.+.+.=+-...++|
T Consensus 76 ~~~~~~~~~~~~~a~~~--~r~-flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~d--d~~~llev~lle~~~~ 149 (394)
T 3txn_A 76 GIEVQLCKDCIEWAKQE--KRT-FLRQSLEARLIALYFDTALYTEALALGAQLLRE-LKKLD--DKNLLVEVQLLESKTY 149 (394)
T ss_dssp HHHHHHHHHHHHHHHHT--TCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-Hhccc--cchhHHHHHHHHHHHH
Confidence 44456666666666653 332 222 4557899999999999998888877542 22222 3688888888899999
Q ss_pred hhhcChHHHHHHHHHHHH
Q 020262 227 VFNENFPAADQKLSYALI 244 (328)
Q Consensus 227 ~~~~~~~~A~~~L~~A~~ 244 (328)
...+|+.+|...++.|-.
T Consensus 150 ~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 150 HALSNLPKARAALTSART 167 (394)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHh
Confidence 999999999999999974
No 205
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=21.30 E-value=3.9e+02 Score=22.85 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=33.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhh---hcChHHHHHHHHHHHHhcCcC
Q 020262 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVF---NENFPAADQKLSYALINCNPQ 249 (328)
Q Consensus 178 ~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~---~~~~~~A~~~L~~A~~~c~~~ 249 (328)
.+...+.+.|+++-+..+++..-.. + |.. +..|.|...+- .+++.+|.+.++.|+..+|.+
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~--~-----p~~----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKARED--A-----RTR----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTS--T-----TCC----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc--C-----CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3444556667777666666533211 1 111 33444544442 577777777777777777754
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=21.04 E-value=58 Score=26.84 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.8
Q ss_pred hhhhhhHHhhhh-----------cChHHHHHHHHHHHHhcCcCc
Q 020262 218 YMYYTGRLEVFN-----------ENFPAADQKLSYALINCNPQS 250 (328)
Q Consensus 218 y~YY~Gr~~~~~-----------~~~~~A~~~L~~A~~~c~~~~ 250 (328)
-+|.+|..|... ++|.+|.++++.|+..-|.+.
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 467888888765 599999999999999999764
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.59 E-value=1e+02 Score=23.52 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=25.9
Q ss_pred hhhhhhhHHhhh----hcChHHHHHHHHHHHHhcC
Q 020262 217 TYMYYTGRLEVF----NENFPAADQKLSYALINCN 247 (328)
Q Consensus 217 ~y~YY~Gr~~~~----~~~~~~A~~~L~~A~~~c~ 247 (328)
.=.|.+|.+|.. +.|+.+|.++++.|...-+
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 92 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND 92 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC
Confidence 445788988887 8999999999999988733
No 208
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=20.06 E-value=1.6e+02 Score=24.01 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHHHHHh----cCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhh
Q 020262 147 KLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFK----LGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 222 (328)
Q Consensus 147 ~le~~a~~l~~~f~~~~~D~sKk~g~~~l~n~l~kiYfk----l~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~ 222 (328)
..++|...+.++-. .++ -.+.+.++ .+|.. .++++.+...++..-.. -+..+.+.=.|.+
T Consensus 68 ~~~~A~~~~~~A~~--~g~---~~a~~~Lg----~~y~~g~g~~~d~~~A~~~~~~A~~~-------~~~~~~~~a~~~L 131 (212)
T 3rjv_A 68 DYPQARQLAEKAVE--AGS---KSGEIVLA----RVLVNRQAGATDVAHAITLLQDAARD-------SESDAAVDAQMLL 131 (212)
T ss_dssp CHHHHHHHHHHHHH--TTC---HHHHHHHH----HHHTCGGGSSCCHHHHHHHHHHHTSS-------TTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--CCC---HHHHHHHH----HHHHcCCCCccCHHHHHHHHHHHHHc-------CCCcchHHHHHHH
Confidence 56666666666622 122 23444444 45655 67888887777643211 1111345668899
Q ss_pred hHHhhh----hcChHHHHHHHHHHHHh
Q 020262 223 GRLEVF----NENFPAADQKLSYALIN 245 (328)
Q Consensus 223 Gr~~~~----~~~~~~A~~~L~~A~~~ 245 (328)
|.++.. +.|+.+|.++++.|...
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 999988 89999999999999987
No 209
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.03 E-value=2.3e+02 Score=26.82 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhhHHhhhhcChHHHHHHHHHHH
Q 020262 175 LTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL 243 (328)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~lik~i~~~~~p~~~~~~~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~ 243 (328)
+.-.|-++|+.-|++.-|.+++..+.... ...-++.+.+.|.--.-|+++-.+||..|...++.|-
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et---~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVET---YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34568899999999999999999885421 1234688999999999999999999999999998874
Done!