Query 020263
Match_columns 328
No_of_seqs 215 out of 1338
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dxu_A Biotin--[acetyl-COA-car 100.0 2.7E-51 9.1E-56 379.0 22.1 200 101-322 2-205 (235)
2 3rkx_A Biotin-[acetyl-COA-carb 100.0 7.6E-52 2.6E-56 398.7 19.0 215 91-313 64-286 (323)
3 2eay_A Biotin [acetyl-COA-carb 100.0 1.6E-50 5.6E-55 373.0 16.9 187 109-313 2-195 (233)
4 3rux_A BIRA bifunctional prote 100.0 5.5E-50 1.9E-54 377.2 20.1 219 90-323 11-243 (270)
5 1bia_A BIRA bifunctional prote 100.0 6.5E-49 2.2E-53 377.1 21.7 212 92-313 65-280 (321)
6 2ej9_A Putative biotin ligase; 100.0 2.3E-49 7.8E-54 366.2 17.6 186 111-314 2-200 (237)
7 3bfm_A Biotin protein ligase-l 100.0 2.4E-39 8E-44 298.4 16.8 186 109-322 11-207 (235)
8 2qhs_A Lipoyltransferase; glob 98.3 6.7E-06 2.3E-10 75.4 13.9 119 146-284 92-226 (237)
9 1w66_A Lipoyltransferase; lipo 97.3 0.0037 1.3E-07 57.1 13.9 120 146-284 75-214 (232)
10 2p5i_A BH3822 protein; PFAM030 96.9 0.0085 2.9E-07 56.0 12.3 127 146-283 89-247 (288)
11 2c8m_A Lipoate-protein ligase 96.6 0.034 1.2E-06 51.0 13.5 128 146-284 71-223 (262)
12 2p0l_A Lipoate-protein ligase 96.5 0.015 5E-07 54.4 10.7 129 146-285 86-248 (288)
13 1vqz_A Lipoate-protein ligase, 96.1 0.031 1.1E-06 53.6 10.8 124 146-284 79-222 (341)
14 2e5a_A Lipoyltransferase 1; li 95.9 0.024 8.1E-07 54.4 8.8 125 146-284 72-214 (347)
15 3a7r_A Lipoate-protein ligase 95.8 0.062 2.1E-06 51.3 11.3 123 146-284 69-212 (337)
16 2ddz_A 190AA long hypothetical 85.5 2.9 9.9E-05 36.9 8.0 107 160-287 66-180 (190)
No 1
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=2.7e-51 Score=379.02 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=173.8
Q ss_pred hhccccccCceEEEccCCCCHHHHHHHhcCCCCCceEEEeCcccccccCCCCceecCCCCceeeeeeecC-CCCCcchHH
Q 020263 101 NSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQ 179 (328)
Q Consensus 101 ~~L~t~~~G~~ii~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~-~~~~l~~ls 179 (328)
..|+|..+|+.++|+++++|||++++++ +.++|++|+|++||+||||+||.|+||+|+||||++++++ +...++.++
T Consensus 2 ~~l~t~~~g~~i~~~~~~~STn~~~~~~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~ 79 (235)
T 2dxu_A 2 LGLKTSIIGRRVIYFQEITSTNEFAKTS--YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIV 79 (235)
T ss_dssp CCCCCSSTTSEEEEESSBSCHHHHHHHS--CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHH
T ss_pred CCcccccCCCeEEEECCCCCHHHHHHhc--CCCCCeEEEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHHHHHH
Confidence 4678999999999999999999999987 6789999999999999999999999999999999999876 445688999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCCcceEEEEEeecCCCCCC--cchHHHHHH
Q 020263 180 YVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP--TTCLNAVLR 257 (328)
Q Consensus 180 ~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~~~~vVIGIGINvn~~~p--~t~L~~~i~ 257 (328)
+++|+||++||+++ | .+++||||||||++|+||||||+|+ ...++||||||||++..| .+++...
T Consensus 80 l~~alAv~~al~~~----~---~~~~iKWPNDi~~~gkKl~GIL~E~----~~~~vViGiGiNv~~~~p~~atsL~~~-- 146 (235)
T 2dxu_A 80 FLGAVGVVETLKEF----S---IDGRIKWPNDVLVNYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLE-- 146 (235)
T ss_dssp HHHHHHHHHHHHHT----T---CCCEEETTTEEEETTEEEEEEEEEE----CSSCEEEEEEECSSSCCCTTBCCHHHH--
T ss_pred HHHHHHHHHHHHHh----C---CCeeeeCCCEEEECCEEEEEEEEee----cCCEEEEEEEEEeCCCCCCchhhHHHh--
Confidence 99999999999986 2 5799999999999999999999998 234699999999998644 4566533
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEecc-CCccccccc
Q 020263 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYN-FGFQPFMAV 322 (328)
Q Consensus 258 ~l~~~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~-~~~~~~~~~ 322 (328)
.+..++|++|++.++++|+++|..|. +||+++.++|+++|+ .||.|...+ .+ ..+.++
T Consensus 147 ----~~~~~~r~~ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~-~g~~V~v~~~~~-~~G~~~ 205 (235)
T 2dxu_A 147 ----LGSEVPLLSVFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI-LGVRVKILGDGS-FEGIAE 205 (235)
T ss_dssp ----HTSCCCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC-CSSEEEC----C-CEEEEE
T ss_pred ----hCCCCCHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc-cCCeEEEEECCe-EEEEEE
Confidence 24578999999999999999999999 899999999999999 999998763 33 445444
No 2
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=7.6e-52 Score=398.68 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=175.3
Q ss_pred CCCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHhcC-CCCCceEEEeCcccccccCCCCceecCCC-Cceeeeeee
Q 020263 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQ 168 (328)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~G~~ii~~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~gr~W~Sp~G-~L~fS~~l~ 168 (328)
++.++++.+...|+|..+|+.++|+++++|||+++ +... +.++|+||+|++||+||||+||.|+||+| +||||++++
T Consensus 64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~~l~ 142 (323)
T 3rkx_A 64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKSLVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSVVLR 142 (323)
T ss_dssp CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHHTTTCCCCEEEEEEEEC------------CTTCEEEEEEEEC
T ss_pred cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHHhcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEEEec
Confidence 46799999999999999999999999999999999 6553 57899999999999999999999999999 899999998
Q ss_pred cC-CCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCCc-ceEEEEEeecCCCC
Q 020263 169 ME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVNNE 246 (328)
Q Consensus 169 ~~-~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~~-~~vVIGIGINvn~~ 246 (328)
|+ +...++.+++++|+||++||++++ +++++||||||||++||||||||+|+..+.+. .++|||||||||++
T Consensus 143 p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv~~~ 216 (323)
T 3rkx_A 143 PNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQ 216 (323)
T ss_dssp CCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEecCC
Confidence 87 556789999999999999999874 36899999999999999999999999877654 47999999999983
Q ss_pred ---CCcchHHHHHHhhh-cCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEecc
Q 020263 247 ---EPTTCLNAVLRKLS-DSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYN 313 (328)
Q Consensus 247 ---~p~t~L~~~i~~l~-~~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~ 313 (328)
.|. .+......+. +.+.+++|++|++.++++|+.+|..|.+.||+++.++|+++|++.||.|...+
T Consensus 217 ~~~~p~-~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~ 286 (323)
T 3rkx_A 217 LENFDE-SIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTE 286 (323)
T ss_dssp GGGSCT-TTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEEC
T ss_pred cccCCc-ccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEE
Confidence 232 1221111121 34678999999999999999999999999999999999999999999998863
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=1.6e-50 Score=373.01 Aligned_cols=187 Identities=28% Similarity=0.473 Sum_probs=153.2
Q ss_pred CceEEEccCCCCHHHHHHHhcCCCCCceEEEeCcccccccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHH
Q 020263 109 GRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTE 188 (328)
Q Consensus 109 G~~ii~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~ 188 (328)
...++|+++++|||+++++ .+.++|++|+|++||+||||+||.|+||+|+||||+++++++...++.+++++|+||++
T Consensus 2 ~~~i~~~~~~~STn~~~~~--~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~lAv~~ 79 (233)
T 2eay_A 2 FKNLIWLKEVDSTQERLKE--WNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGLSVSE 79 (233)
T ss_dssp CCEEEEEEEBSCHHHHHHH--SCCCTTEEEEESCBCC------------CCEEEEEEEECTTTCCCTTHHHHHHHHHHHH
T ss_pred CccEEEEcccCCHHHHHHh--cCCCCCeEEEECCcCCCCCCCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999998 56789999999999999999999999999999999999887556788999999999999
Q ss_pred HHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCCcceEEEEEeecCCC-CCC------cchHHHHHHhhhc
Q 020263 189 AINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN-EEP------TTCLNAVLRKLSD 261 (328)
Q Consensus 189 aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~~~~vVIGIGINvn~-~~p------~t~L~~~i~~l~~ 261 (328)
||++++ | .+++||||||||++|+||||||+|+..+.+ ||||||||++ +.| .+++...
T Consensus 80 al~~~~---~---~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~----ViGIGiNv~~~~~p~~~~~~atsL~~~------ 143 (233)
T 2eay_A 80 ALEEIT---E---IPFSLKWPNDVYFQEKKVSGVLCELSKDKL----IVGIGINVNQREIPEEIKDRATTLYEI------ 143 (233)
T ss_dssp HHHHHH---C---CCCEEETTTEEEETTEEEEEEEEEEETTEE----EEEEEEECSCCCCCTTTTTTBCCHHHH------
T ss_pred HHHHhc---C---CCccEeCcceEEECCeEEEEEEEEeecCCC----EEEEEEEcccccCcchhhhhhhhhHHh------
Confidence 999975 2 579999999999999999999999976532 9999999996 223 3455432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEecc
Q 020263 262 STYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYN 313 (328)
Q Consensus 262 ~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~ 313 (328)
.+..++|++|++.++++|+++|..|.++||+++.++|+++|++.||.|....
T Consensus 144 ~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~ 195 (233)
T 2eay_A 144 TGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLG 195 (233)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTTTTSEEEETT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcccCCEEEEEE
Confidence 2467999999999999999999999999999999999999999999998863
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=5.5e-50 Score=377.17 Aligned_cols=219 Identities=21% Similarity=0.219 Sum_probs=183.5
Q ss_pred cCCCCCHHHHHhhc-cccccCceEEEccCCCCHHHHHHHhcC-CC-CCceEEEeCcccccccCCCCceecCCC-Cceeee
Q 020263 90 KQESFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHNFC-EL-PVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSF 165 (328)
Q Consensus 90 ~~~~f~~~~~~~~L-~t~~~G~~ii~~~~v~STn~~a~~~~~-~~-~~g~vviA~~QTaGRGR~gr~W~Sp~G-~L~fS~ 165 (328)
..+.+|.+.+...| .+...++.++++++++|||+++++++. +. ++|+||+|++||+||||+||.|+||+| +||||+
T Consensus 11 ~~~~L~~~~i~~~l~~~~~~~~~i~~~~~~~STN~~~~~~~~~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~ 90 (270)
T 3rux_A 11 LRPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSV 90 (270)
T ss_dssp GCCCCCHHHHHHHHSSTTCCCCEEEEEEEESCHHHHHHHHHHTTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEEEE
T ss_pred CCCCCCHHHHHHhhccccccCceEEEEccCCcHHHHHHHHHhcCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEEEE
Confidence 34669999999999 556667789999999999999998764 34 799999999999999999999999999 899999
Q ss_pred eeecC--CCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCCcceEEEEEeecC
Q 020263 166 TIQME--DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNV 243 (328)
Q Consensus 166 ~l~~~--~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~~~~vVIGIGINv 243 (328)
+++++ +...++.+++++|+||++||+.++.. .+.+++||||||||++||||||||+|... .++||||||||
T Consensus 91 ~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~---~~~~~~iKWPNDI~~~gkKl~GIL~E~~~----~~vViGIGiNv 163 (270)
T 3rux_A 91 GVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAV---PPAETGLKWPNDVLARGGKLAGILAEVAQ----PFVVLGVGLNV 163 (270)
T ss_dssp EEECTTSCGGGTHHHHHHHHHHHHHHHGGGSSS---CCSSCEEETTTEEEETTEEEEEEEEEEET----TEEEEEEEEES
T ss_pred EEccCCCChHHHHHHHHHHHHHHHHHHHHhccc---CCCceEEECCCeEEECCEEEEEEEEEeeC----CeEEEEEEEec
Confidence 99986 33568899999999999999965421 23689999999999999999999999873 47999999999
Q ss_pred CCCC------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEecc--CC
Q 020263 244 NNEE------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYN--FG 315 (328)
Q Consensus 244 n~~~------p~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~--~~ 315 (328)
|+.. +.+||.. ..+.. +|++|++.++++|+++|..|.+. |+++.++|+++|++.||.|.... ..
T Consensus 164 ~~~~~~~~~~~atSL~~------~~~~~-~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~V~v~~~~~~ 235 (270)
T 3rux_A 164 TQAPEEVDPDATSLLDL------GVAAP-DRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLTIGSRVRVELPGGQ 235 (270)
T ss_dssp SCCHHHHCTTBCCTGGG------TCSSC-CHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSSTTSEEEEECTTSC
T ss_pred cCCccccCchhhccHHH------hcCCC-CHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcccCCEEEEEECCCe
Confidence 9852 2455532 12334 99999999999999999999987 99999999999999999999863 23
Q ss_pred cccccccc
Q 020263 316 FQPFMAVK 323 (328)
Q Consensus 316 ~~~~~~~~ 323 (328)
-..+.+++
T Consensus 236 ~~~G~~~g 243 (270)
T 3rux_A 236 DVVGIARD 243 (270)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 34455543
No 5
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=6.5e-49 Score=377.08 Aligned_cols=212 Identities=24% Similarity=0.357 Sum_probs=166.9
Q ss_pred CCCCHHHHHhhccccccCceEEEccCCCCHHHHHHHhcCCCCCceEEEeCcccccccCCCCceecCCC-CceeeeeeecC
Q 020263 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFTIQME 170 (328)
Q Consensus 92 ~~f~~~~~~~~L~t~~~G~~ii~~~~v~STn~~a~~~~~~~~~g~vviA~~QTaGRGR~gr~W~Sp~G-~L~fS~~l~~~ 170 (328)
..++...+...+.+ ..++++++++|||+++++++...++|++|+|++||+||||+||.|+||+| +||||++++++
T Consensus 65 ~~L~~~eI~~~L~~----~~~~~~~~~~STn~~~~~~~~~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~l~~~ 140 (321)
T 1bia_A 65 QLLNAKQILGQLDG----GSVAVLPVIDSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLE 140 (321)
T ss_dssp CCCCHHHHHHTCCS----SCEEECSSBSCHHHHHHTTGGGCCTTCEEEESCBTTC---------CCTTSEEEEEEEEEEC
T ss_pred ccCCHHHHHHhcCC----ceEEEEEeeCChhHHHHHHHhcCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEEEccC
Confidence 56999999888865 56999999999999999887666689999999999999999999999999 79999999886
Q ss_pred -CCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCC-cceEEEEEeecCCCCCC
Q 020263 171 -DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTK-KFNVSIGIGLNVNNEEP 248 (328)
Q Consensus 171 -~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~-~~~vVIGIGINvn~~~p 248 (328)
....++.+++++|+||++||+++ |. .+++||||||||++|+||||||+|+..+.+ ..++||||||||++..+
T Consensus 141 ~~~~~~~~l~l~~~~av~~al~~~----~~--~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~~~~~ 214 (321)
T 1bia_A 141 QGPAAAIGLSLVIGIVMAEVLRKL----GA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRV 214 (321)
T ss_dssp C-CCCTHHHHHHHHHHHHHHHHHT----TC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC---
T ss_pred CChHHHhhHHHHHHHHHHHHHHHh----CC--CCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecCCCcc
Confidence 45578899999999999999986 32 269999999999999999999999976643 35799999999998642
Q ss_pred -cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEecc
Q 020263 249 -TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYN 313 (328)
Q Consensus 249 -~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~ 313 (328)
..++......+...+..++|++|++.++++|+++|..|.++||+++.++|+++|++.||.|...+
T Consensus 215 ~~~~~~~~atsL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~ 280 (321)
T 1bia_A 215 EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLII 280 (321)
T ss_dssp --------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTTTTSEEEEEE
T ss_pred ccchhccccccHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCCEEEEEE
Confidence 12233222223224568999999999999999999999999999999999999999999998864
No 6
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-49 Score=366.21 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=161.6
Q ss_pred eEEEccCCCCHHHHHHHhcC-CCCCceEEEeCcccccccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHHH
Q 020263 111 LLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEA 189 (328)
Q Consensus 111 ~ii~~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~a 189 (328)
.++|+++++|||+++++++. +.+ |++|+|++||+||||+||.|+||+|+||||+++++..... +.+++++|+||++|
T Consensus 2 ~i~~~~~~~STn~~~~~~~~~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~-~~l~l~~~lAv~~a 79 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAKEGKR-NFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-KVINLLVPICIIEV 79 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHHTTCC-SEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH-HHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHHHHHhCCCC-CEEEEECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH-HHHHHHHHHHHHHH
Confidence 47899999999999998764 456 9999999999999999999999999999999999732222 88999999999999
Q ss_pred HHHhhhcCCCCCCCceeeecCceeecC----eEEeEeeceeeccCCcceEEEEEeecCCCCCC------cchHHHHHHhh
Q 020263 190 INYVCSRDGLPCLDIKIKWPNDLYLNG----IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP------TTCLNAVLRKL 259 (328)
Q Consensus 190 L~~~~~~~g~~~l~v~IKWPNDIyv~g----kKIgGILvE~~~~~~~~~vVIGIGINvn~~~p------~t~L~~~i~~l 259 (328)
|++++ +.+++||||||||++| +||||||+|+ ...++||||||||++..| .+++...
T Consensus 80 l~~~~------~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~----~~~~vViGiGiNv~~~~p~~l~~~atsL~~~---- 145 (237)
T 2ej9_A 80 LKNYV------DKELGLKFPNDIMVKVNDNYKKLGGILTEL----TDDYMIIGIGINVNNQIRNEIREIAISLKEI---- 145 (237)
T ss_dssp HTTTC------CSCEEEETTTEEEEEETTEEEEEEEEEEEE----CSSEEEEEEEECSSSCCCGGGGGTBCCHHHH----
T ss_pred HHHhh------CCCcceeCCCEEEECCCcCccEeeEEEEec----CCCeEEEEEEEecCCCCcchhhhhhccHhHh----
Confidence 99864 3579999999999999 9999999998 245799999999998533 3444322
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHhccCCeEEeccC
Q 020263 260 SDSTYQFRREDVIAAFFNKFETFYDTFINQ--GFQTLEELYYKTWLHRFSCSCQYNF 314 (328)
Q Consensus 260 ~~~~~~l~re~Lla~il~~fe~~~~~~~~~--gf~~l~~~y~~~wlh~~Q~v~~~~~ 314 (328)
.+..++|++|++.++++|+++|..|.++ ||+++.++|+++|++.||.|...+.
T Consensus 146 --~~~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~ 200 (237)
T 2ej9_A 146 --TGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQVKILLS 200 (237)
T ss_dssp --HSSCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSSTTCEEEEEET
T ss_pred --HCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCccCCEEEEEEC
Confidence 2467999999999999999999999998 9999999999999999999988643
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=2.4e-39 Score=298.39 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=153.7
Q ss_pred CceEEEccCCCCHHHHHHHhcC-CCCCceEEEeCcccccccCCCCceecCCCCceeeeeeecC-CCCCcchHHHHHHHHH
Q 020263 109 GRLLIWSPRLPSTHDVVSHNFC-ELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVVPLLQYVASLAL 186 (328)
Q Consensus 109 G~~ii~~~~v~STn~~a~~~~~-~~~~g~vviA~~QTaGRGR~gr~W~Sp~G~L~fS~~l~~~-~~~~l~~ls~~~~lAV 186 (328)
+..+.+.++++|||+++++.+. +.++|+||+|+ +.|+||||++++++ ....++.+++++|+||
T Consensus 11 ~~~~~~l~~~~STN~~a~~~a~~g~~~g~vv~A~---------------~g~~L~~S~~l~~~~~~~~~~~lsl~~alAv 75 (235)
T 3bfm_A 11 LMTGEAAGPGQDPFDLACQKAELGVDAGLVVYEL---------------GTDVLRAALVLAPEVPLAKAMAMLPVCGVGF 75 (235)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCCTTEEEEEE---------------CSSEEEEEEEECCSSCHHHHTTHHHHHHHHH
T ss_pred CcceeecCCCCCHHHHHHHHHhcCCCCCEEEEEc---------------CCCCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999999998764 45799999999 44589999999876 3345788999999999
Q ss_pred HHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeecc--CC-cceEEEEEeecCCCCCC------cchHHHHHH
Q 020263 187 TEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR--TK-KFNVSIGIGLNVNNEEP------TTCLNAVLR 257 (328)
Q Consensus 187 ~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~--~~-~~~vVIGIGINvn~~~p------~t~L~~~i~ 257 (328)
++||+++.. +..+++||||||||++||||||||+|+... .+ ..++||||||||++..+ .+++.
T Consensus 76 ~~aL~~~~~----~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~~~~~~atsL~---- 147 (235)
T 3bfm_A 76 QNALGALAP----PEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALY---- 147 (235)
T ss_dssp HHHHHHHSC----TTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGG----
T ss_pred HHHHHHhcC----CCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcccccccccchh----
Confidence 999999742 112399999999999999999999999874 33 45799999999998643 23432
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccCCeEEeccCCccccccc
Q 020263 258 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHRFSCSCQYNFGFQPFMAV 322 (328)
Q Consensus 258 ~l~~~~~~l~re~Lla~il~~fe~~~~~~~~~gf~~l~~~y~~~wlh~~Q~v~~~~~~~~~~~~~ 322 (328)
.+.+..++|++|++.++++|+++|..|.+.||++++++|+++|++.||.|.. + + ..+.++
T Consensus 148 --~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v-~-~-~~G~~~ 207 (235)
T 3bfm_A 148 --AEGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTE-A-G-RSGTFL 207 (235)
T ss_dssp --GTTCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTTTTSEEEE-T-T-EEEEEE
T ss_pred --HhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEE-E-e-EEEEEE
Confidence 1235689999999999999999999999999999999999999999999998 4 4 445544
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.34 E-value=6.7e-06 Score=75.44 Aligned_cols=119 Identities=16% Similarity=0.089 Sum_probs=78.7
Q ss_pred cccCCCCceecCCCCc-eeeeeeecCCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCcee-eecCceeecCeEEeEee
Q 020263 146 GRGRSKNAWESPKGCL-MFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLNGIKVGGIL 223 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L-~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~I-KWPNDIyv~gkKIgGIL 223 (328)
.|-|+|..=+-.+|++ .++++ .... .....--...-+|.++|+++ | ++... ++.|||+++|+|||||-
T Consensus 92 rr~rGGgavyH~pGqlv~Y~i~-~~~~--~~~~~~~~l~~~ii~~L~~l----G---i~a~~~~g~~dv~v~grKIag~g 161 (237)
T 2qhs_A 92 WVERGGDVTYHGPGQLVGYPIF-PVGR--EVRRFLRQIEEAIVRVAAGY----G---ISAYPTPGYAGVWVGEDKLCAIG 161 (237)
T ss_dssp ECCSSSSEEEECTTEEEEEEEC-CCTT--CHHHHHHHHHHHHHHHHHHT----T---CCCBCCSSSSSEEETTEEEEEEE
T ss_pred EEcCCCEEEEECCCCEEEEEEE-ECCc--CHHHHHHHHHHHHHHHHHHc----C---CcEEEeCCCCCEEECCcEEEEEe
Confidence 5678888777778876 44444 3322 11111112345677777664 5 45556 68999999999999999
Q ss_pred ceeeccCCcceEEEEEeecCCCCC--------------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 020263 224 CTSTYRTKKFNVSIGIGLNVNNEE--------------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (328)
Q Consensus 224 vE~~~~~~~~~vVIGIGINvn~~~--------------p~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~ 284 (328)
+... ...+.-|+.||++.+. ..+++...+ +..++.+++...+++.|.+.|.
T Consensus 162 ~~~~----~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l------~~~~~~~ev~~~l~~~f~~~~~ 226 (237)
T 2qhs_A 162 VAVK----EGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL------GRKVPMEEAKARVVAAFAEVFG 226 (237)
T ss_dssp EEEE----TTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHH------TSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEee----CCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhh------CCCCCHHHHHHHHHHHHHHHhC
Confidence 8743 1245679999998741 124554332 4578999999999999887663
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=97.33 E-value=0.0037 Score=57.12 Aligned_cols=120 Identities=19% Similarity=0.163 Sum_probs=79.8
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchHHHH--HHHHHHHHHHHhhhcCCCCCCCceeee-cCceeec---CeEE
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYV--ASLALTEAINYVCSRDGLPCLDIKIKW-PNDLYLN---GIKV 219 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~--~~lAV~~aL~~~~~~~g~~~l~v~IKW-PNDIyv~---gkKI 219 (328)
.|.|+|..-+-.+|++.+.+++.... ....-.++ ..-+|.++|+++ | ++...+= .|||+++ |+||
T Consensus 75 r~~rGG~~tYHgPGQlv~Y~Il~l~~--~~~v~~~v~~le~~vI~~L~~~----G---i~a~~~~g~~gV~v~~~~~rKI 145 (232)
T 1w66_A 75 DTDRGGKITWHGPGQLVGYPIIGLAE--PLDVVNYVRRLEESLIQVCADL----G---LHAGRVDGRSGVWLPGRPARKV 145 (232)
T ss_dssp ECSSSSSEEEECTTEEEEEEECBBCS--SCCHHHHHHHHHHHHHHHHHHT----T---CCCEEETTEEEEEECSSSCEEE
T ss_pred EecCCCceEEECCCCeEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHc----C---CCeEecCCCCeEEecCCCCCEE
Confidence 57888887777788888888887543 22222332 345677777764 4 4555442 4899999 9999
Q ss_pred eEeeceeeccCCcceEEEEEeecCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 020263 220 GGILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (328)
Q Consensus 220 gGILvE~~~~~~~~~vVIGIGINvn~~~-------p-------~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~ 284 (328)
|||=+-.. .....=|+-+|++.+. | .+|+... .+..++.+++...++++|.+.+.
T Consensus 146 aaig~r~~----~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~~ 214 (232)
T 1w66_A 146 AAIGVRVS----RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAALD 214 (232)
T ss_dssp EEEEEEEE----TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEeeeeee----CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHhC
Confidence 99877532 1234478889998741 1 2444422 14578999999999998887653
No 10
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=96.92 E-value=0.0085 Score=56.00 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=70.6
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCcee--------eecCceeecCe
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLNGI 217 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~I--------KWPNDIyv~gk 217 (328)
.|-|+|+.=+-.+|++.+|++.+......+-..--...-.|.++|++ +| +++.. .=.|||.++|+
T Consensus 89 RR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~----lG---i~a~~~~~~~~~c~g~~dl~v~gr 161 (288)
T 2p5i_A 89 VRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQD----HR---EQIEAREIVGSYCPGSYDLSIDGK 161 (288)
T ss_dssp EESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC----------CCCEECCCTTSSSCCTTCEEETTE
T ss_pred EEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHH----cC---CcEEEeccccCCCCCCccEEECCE
Confidence 56778886666678999999876431111111111223445555544 34 23333 11499999999
Q ss_pred EEeEeeceeeccCCcceEEEEEeecCCCCCCc--ch----HHHHHH-----------------hhhc-CCCCCCHHHHHH
Q 020263 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLR-----------------KLSD-STYQFRREDVIA 273 (328)
Q Consensus 218 KIgGILvE~~~~~~~~~vVIGIGINvn~~~p~--t~----L~~~i~-----------------~l~~-~~~~l~re~Lla 273 (328)
||||+=.-.. ...+..|+-||++.+... .- ....+. .+.+ .+..++.+++..
T Consensus 162 KI~G~Aqr~~----~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~ 237 (288)
T 2p5i_A 162 KFAGISQRRI----RGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLL 237 (288)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHH
T ss_pred EEEEEEEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHH
Confidence 9999854432 124567888999864211 00 001100 0000 134678999999
Q ss_pred HHHHHHHHHH
Q 020263 274 AFFNKFETFY 283 (328)
Q Consensus 274 ~il~~fe~~~ 283 (328)
.+++.|.+.+
T Consensus 238 ~l~~~f~~~~ 247 (288)
T 2p5i_A 238 KALMTLQQHG 247 (288)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 9999888764
No 11
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=96.59 E-value=0.034 Score=51.04 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=74.5
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcc-hHHHHHHHHHHHHHHHhhhcCCCC-------CCCceeeecCceeecCe
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVP-LLQYVASLALTEAINYVCSRDGLP-------CLDIKIKWPNDLYLNGI 217 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~-~ls~~~~lAV~~aL~~~~~~~g~~-------~l~v~IKWPNDIyv~gk 217 (328)
.|-|+|+.=+-.+|+|.+|++.+.... ... ... ...-.|.++|+++ |++ ..+....=.|||+++|+
T Consensus 71 rR~sGGgavyhd~G~l~ys~i~~~~~~-~~~~~y~-~l~~~ii~~l~~l----Gi~~~~~~~~~~~a~~~g~~dv~v~g~ 144 (262)
T 2c8m_A 71 RRYTGGGAVYHDLGDLNFSVVRSSDDM-DITSMFR-TMNEAVVNSLRIL----GLDARPGELNDVSIPVNKKTDIMAGEK 144 (262)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECSSC-CHHHHHH-HHHHHHHHHHHHT----TCCCEECCBCCTTSSSSBTTSEEETTE
T ss_pred EECCCCceEEeCCCcEEEEEEEcCCCC-CHHHHHH-HHHHHHHHHHHHc----CCCcccccccCCcceECCcCcEEECCe
Confidence 566777755555689999999864321 111 111 2345566666654 531 00333333599999999
Q ss_pred EEeEeeceeeccCCcceEEEEEeecCCCCC--------Ccch-HHHH--------HHhhhcCCCCCCHHHHHHHHHHHHH
Q 020263 218 KVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------PTTC-LNAV--------LRKLSDSTYQFRREDVIAAFFNKFE 280 (328)
Q Consensus 218 KIgGILvE~~~~~~~~~vVIGIGINvn~~~--------p~t~-L~~~--------i~~l~~~~~~l~re~Lla~il~~fe 280 (328)
||||+=.-.. ...+..|.-||++.+. +..| +... ...+.+.. .++.+++...+.+.|.
T Consensus 145 Ki~G~aqr~~----~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 145 KIMGAAGAMR----KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEe----CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999854432 1246788889998641 0001 1100 01111212 5889999999999998
Q ss_pred HHHH
Q 020263 281 TFYD 284 (328)
Q Consensus 281 ~~~~ 284 (328)
+.+.
T Consensus 220 ~~~~ 223 (262)
T 2c8m_A 220 ETLH 223 (262)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8774
No 12
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=96.52 E-value=0.015 Score=54.41 Aligned_cols=129 Identities=21% Similarity=0.140 Sum_probs=72.4
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchH--HHHHHHHHHHHHHHhhhcCCCCCCCcee--------eecCceeec
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLL--QYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLN 215 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~l--s~~~~lAV~~aL~~~~~~~g~~~l~v~I--------KWPNDIyv~ 215 (328)
.|-|+|+.=+-.+|++.+|++.+.........- --...-.|.++|++ +| +++.. .=.|||.++
T Consensus 86 RR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~----lG---i~a~~~~~~~~~c~g~~Dl~v~ 158 (288)
T 2p0l_A 86 VRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD----FY---QPIEHFEVETSYCPGKFDLSIN 158 (288)
T ss_dssp ECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT----SC---SCCEECCCTTSSSCCTTCEEET
T ss_pred EEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH----cC---CcEEEccccCCCCCCCccEEEC
Confidence 566777766666779999999765311111111 11123445555544 34 23332 125999999
Q ss_pred CeEEeEeeceeeccCCcceEEEEEeecCCCCCCc--ch----HHHHHH-----------------hhhc-CCCCCCHHHH
Q 020263 216 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLR-----------------KLSD-STYQFRREDV 271 (328)
Q Consensus 216 gkKIgGILvE~~~~~~~~~vVIGIGINvn~~~p~--t~----L~~~i~-----------------~l~~-~~~~l~re~L 271 (328)
|+||||+=.-.. ...+..|+-||++.+... .. ....+. .+.+ .+..++.+++
T Consensus 159 grKI~G~Aqr~~----~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v 234 (288)
T 2p0l_A 159 GKKFAGLAQRRI----KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDV 234 (288)
T ss_dssp TEEEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHH
T ss_pred CEEEEEEeEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHH
Confidence 999999854432 123567888898864210 00 000100 0000 1335889999
Q ss_pred HHHHHHHHHHHHHH
Q 020263 272 IAAFFNKFETFYDT 285 (328)
Q Consensus 272 la~il~~fe~~~~~ 285 (328)
...+++.|.+.|..
T Consensus 235 ~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 235 IDRMLISLKQVGFN 248 (288)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887654
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=96.13 E-value=0.031 Score=53.58 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=77.4
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeece
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 225 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE 225 (328)
.|-|+|..=+-.+|+|.+|++.+........ .. ...-.|.++|+++ | +++.+.=.|||+++|+||||+=.-
T Consensus 79 RR~sGGgaVyHd~G~l~ys~i~~~~~~~~~~-y~-~l~~~ii~aL~~l----G---i~a~~~gr~Di~v~grKIsG~Aqr 149 (341)
T 1vqz_A 79 RRISGGGAVYHDLNNLNYTIISKEDENKAFD-FK-SFSTPVINTLAQL----G---VKAEFTGRNDLEIDGKKFCGNAQA 149 (341)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECCTTCCCS-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEETTEEEEEEEEE
T ss_pred EECCCCCeEEECCCceEEEEEEcCcccCCcc-HH-HHHHHHHHHHHHc----C---CeEEECCCCCEEEeCEEEEEEEEE
Confidence 5667777666668889999987543221121 22 2345677777664 4 456665569999999999998544
Q ss_pred eeccCCcceEEEEEeecCCCCCCcchHHHH-------------------HHhhhc-CCCCCCHHHHHHHHHHHHHHHHH
Q 020263 226 STYRTKKFNVSIGIGLNVNNEEPTTCLNAV-------------------LRKLSD-STYQFRREDVIAAFFNKFETFYD 284 (328)
Q Consensus 226 ~~~~~~~~~vVIGIGINvn~~~p~t~L~~~-------------------i~~l~~-~~~~l~re~Lla~il~~fe~~~~ 284 (328)
.. ...+..|.-||++.+.. .+... ...+.+ .+..++.+++...+++.|.+.+.
T Consensus 150 ~~----~~~~lhhgtllvd~Dl~--~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~ 222 (341)
T 1vqz_A 150 YI----NGRIMHHGCLLFDVDLS--VLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP 222 (341)
T ss_dssp EE----TTEEEEEEEEESSCCTT--HHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred EE----CCEEEEEEEEEecCCHH--HHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 32 12466788888875321 01101 011111 12368999999999999988763
No 14
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=95.90 E-value=0.024 Score=54.44 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=72.7
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecC-eEEeEeec
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 224 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~g-kKIgGILv 224 (328)
.|-|+|..=+-.+|++.+|++.+.... ... ...-.|.++|+++ |+ ++++...=.|||+++| +||||+=.
T Consensus 72 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~~~--~~~~~ii~~L~~l----G~-~i~a~~~g~~di~v~g~~KIsG~Aq 141 (347)
T 2e5a_A 72 RRRSGGGTVYHDMGNINLTFFTTKKKY---DRM--ENLKLVVRALKAV----HP-HLDVQATKRFDLLLDGQFKISGTAS 141 (347)
T ss_dssp ECSSCSCCEEECTTEEEEEEEECGGGC---CHH--HHHHHHHHHHHHH----ST-TCCEEECTTSCEEETTTEEEECEEE
T ss_pred EECCCCCcEEECCCcEEEEEEeccccC---CHH--HHHHHHHHHHHHh----CC-ceEEEECCCCcEEECCCcEEEEEeE
Confidence 556777766666888999998743321 121 2345567777775 31 2455665459999998 99999833
Q ss_pred eeeccCCcceEEEEEeecCCCCC----------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 020263 225 TSTYRTKKFNVSIGIGLNVNNEE----------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (328)
Q Consensus 225 E~~~~~~~~~vVIGIGINvn~~~----------p-------~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~ 284 (328)
.... ..+.-+.-||++.+. | .+++...+..+.+..+.++.+++...+++.|.+.|.
T Consensus 142 -~~~~---~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 142 -KIGR---NAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp -EECS---SCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EeeC---CeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2211 123445567775431 1 001110000000112458899999999999988875
No 15
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=95.82 E-value=0.062 Score=51.30 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=76.1
Q ss_pred cccCCCCceecCCCCceeeeeeecCCCCCcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceee---cC-eEEeE
Q 020263 146 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL---NG-IKVGG 221 (328)
Q Consensus 146 GRGR~gr~W~Sp~G~L~fS~~l~~~~~~~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv---~g-kKIgG 221 (328)
.|-|+|..=+-.+|+|.+|++.+.... .+ . ...-.|.++|+++ | +++.+.=.|||++ +| +||||
T Consensus 69 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~y-~-~l~~~ii~~L~~l----G---i~a~~~g~~di~v~~~~g~rKIsG 136 (337)
T 3a7r_A 69 RRSSGGGAVFHDLGNTCFTFMAGKPEY---DK-T-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTVEGDRKVSG 136 (337)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEETTTC---CH-H-HHHHHHHHHHHHT----T---CCEEEETTTEEEECCTTSCEEEEE
T ss_pred EEcCCCccEEECCCcEEEEEEECCccc---CH-H-HHHHHHHHHHHHc----C---CeEEECCCCcEEEEeCCCceEEEE
Confidence 566777766666899999998754321 12 1 2345666777664 4 4566665799999 89 99999
Q ss_pred eeceeeccCCcceEEEEEeecCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 020263 222 ILCTSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 284 (328)
Q Consensus 222 ILvE~~~~~~~~~vVIGIGINvn~~~----------p~-------t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~ 284 (328)
+=.-.. ...+.-|.-||++.+. |. +++......+.+....++.+++...+++.|.+.|.
T Consensus 137 ~Aqr~~----~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 137 SAYRET----KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp EEEEEC----SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEE----CCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 854332 1246678888887531 10 00000001111112348899999999999988764
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=85.47 E-value=2.9 Score=36.90 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=63.2
Q ss_pred Cceeeeeee-cCCCC--CcchHHHHHHHHHHHHHHHhhhcCCCCCCCceeeecCceeecCeEEeEeeceeeccCCcceEE
Q 020263 160 CLMFSFTIQ-MEDGR--VVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVS 236 (328)
Q Consensus 160 ~L~fS~~l~-~~~~~--~l~~ls~~~~lAV~~aL~~~~~~~g~~~l~v~IKWPNDIyv~gkKIgGILvE~~~~~~~~~vV 236 (328)
.-+.-|++. ++.+. .....|-+...-+.+.|++. | +.+ .+=-.|||+||+|+.=-....+.. -.-
T Consensus 66 ~dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~~----g---~~~-~R~GDDLy~~~~KLSVSIAt~s~v----S~k 133 (190)
T 2ddz_A 66 DDMVHYILELFWHPDILLASSLQKLLIARLVELLWNY----G---IEA-SRRGDDIYVNGRKLSISIATVSPV----SIK 133 (190)
T ss_dssp EEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTT----T---CCE-EEETTEEEETTEECEEEEEEECSS----CEE
T ss_pred ccceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHHc----C---Cee-eeccCeeeECCCEEEEEEEecCcc----hhe
Confidence 456667764 33211 22344545555556666643 3 222 446899999999987444443322 234
Q ss_pred EEEeecCCCC-----CCcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020263 237 IGIGLNVNNE-----EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFI 287 (328)
Q Consensus 237 IGIGINvn~~-----~p~t~L~~~i~~l~~~~~~l~re~Lla~il~~fe~~~~~~~ 287 (328)
|=+||||... .|+..|.+. | ++.+++.+.+..++.+-++...
T Consensus 134 IH~GiNV~s~g~P~~V~aigL~dl-------G--i~i~~~~~~i~~~y~~E~~~Ie 180 (190)
T 2ddz_A 134 IHIGLNVKTVGVPPGVDAIGLEEL-------G--IDPTEFMERSAKALVEEIEKVR 180 (190)
T ss_dssp EEEEEESCCSSCCSSSCBCCHHHH-------T--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccCCCCCccccCHHHc-------C--CCHHHHHHHHHHHHHHHHHHHH
Confidence 6779999864 234456543 3 3788888888887776665544
Done!