Query 020264
Match_columns 328
No_of_seqs 245 out of 1930
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:20:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02883 Branched-chain amino 100.0 4.3E-76 9.3E-81 576.2 31.4 315 12-326 2-318 (384)
2 PLN02259 branched-chain-amino- 100.0 6.6E-75 1.4E-79 568.8 29.7 318 7-326 1-322 (388)
3 KOG0975 Branched chain aminotr 100.0 3.9E-74 8.4E-79 545.8 24.1 274 52-326 36-312 (379)
4 PLN02782 Branched-chain amino 100.0 7.4E-72 1.6E-76 549.7 31.5 274 53-326 62-336 (403)
5 PLN03117 Branched-chain-amino- 100.0 6.3E-62 1.4E-66 473.4 32.3 274 52-326 11-285 (355)
6 PRK13357 branched-chain amino 100.0 1.1E-57 2.3E-62 444.0 32.5 277 50-326 6-283 (356)
7 TIGR01123 ilvE_II branched-cha 100.0 4E-50 8.8E-55 384.4 26.9 241 86-326 1-243 (313)
8 TIGR01122 ilvE_I branched-chai 100.0 2.6E-47 5.6E-52 362.5 26.4 230 86-326 1-236 (298)
9 COG0115 IlvE Branched-chain am 100.0 1.5E-46 3.3E-51 355.2 26.4 227 85-326 4-235 (284)
10 PRK06606 branched-chain amino 100.0 4.8E-46 1E-50 355.2 27.1 231 85-326 9-244 (306)
11 cd01557 BCAT_beta_family BCAT_ 100.0 8.4E-46 1.8E-50 349.4 27.6 226 98-326 1-227 (279)
12 PRK07544 branched-chain amino 100.0 1.2E-45 2.6E-50 350.3 25.5 226 85-326 11-241 (292)
13 PRK12479 branched-chain amino 100.0 3.3E-45 7.2E-50 348.5 26.4 223 85-326 6-236 (299)
14 PRK08320 branched-chain amino 100.0 6.3E-45 1.4E-49 344.4 26.9 226 85-326 5-235 (288)
15 PRK13356 aminotransferase; Pro 100.0 6.8E-45 1.5E-49 344.1 27.1 225 85-326 9-237 (286)
16 cd01558 D-AAT_like D-Alanine a 100.0 1.9E-44 4.2E-49 337.7 26.3 222 86-326 1-226 (270)
17 PRK07650 4-amino-4-deoxychoris 100.0 1.2E-43 2.6E-48 335.1 26.2 223 85-326 2-228 (283)
18 PRK07849 4-amino-4-deoxychoris 100.0 3.8E-43 8.2E-48 333.5 26.9 224 85-326 9-243 (292)
19 PRK06680 D-amino acid aminotra 100.0 7E-43 1.5E-47 330.5 27.3 222 85-326 5-233 (286)
20 TIGR03461 pabC_Proteo aminodeo 100.0 4.9E-43 1.1E-47 326.8 25.5 219 86-326 1-222 (261)
21 TIGR01121 D_amino_aminoT D-ami 100.0 1.7E-42 3.6E-47 326.3 26.7 219 85-326 2-227 (276)
22 PRK12400 D-amino acid aminotra 100.0 2.3E-42 4.9E-47 327.6 26.4 220 85-326 7-234 (290)
23 PLN02845 Branched-chain-amino- 100.0 2.9E-42 6.3E-47 333.4 26.6 223 85-326 43-274 (336)
24 cd01559 ADCL_like ADCL_like: 4 100.0 2.6E-42 5.7E-47 320.0 25.0 206 103-326 1-208 (249)
25 PRK06092 4-amino-4-deoxychoris 100.0 3.6E-42 7.8E-47 322.3 26.1 220 85-326 2-224 (268)
26 cd00449 PLPDE_IV PyridoxaL 5'- 100.0 2E-41 4.4E-46 314.0 26.3 208 103-326 1-212 (256)
27 PRK09266 hypothetical protein; 100.0 1E-39 2.2E-44 305.7 25.6 211 85-326 5-216 (266)
28 PRK07546 hypothetical protein; 100.0 1.3E-30 2.9E-35 236.2 22.2 182 110-326 4-186 (209)
29 PF01063 Aminotran_4: Aminotra 100.0 1.6E-30 3.4E-35 237.0 21.1 183 129-326 1-190 (231)
30 PRK07101 hypothetical protein; 99.9 1.5E-24 3.3E-29 193.7 19.9 166 110-326 3-170 (187)
31 COG5475 Uncharacterized small 31.0 43 0.00094 24.2 2.1 24 72-95 26-55 (60)
32 KOG3442 Uncharacterized conser 30.7 1.1E+02 0.0023 25.8 4.8 40 138-181 58-98 (132)
33 PF13051 DUF3912: Protein of u 30.3 41 0.0009 24.4 2.0 39 277-315 30-68 (68)
34 cd01712 ThiI ThiI is required 23.9 79 0.0017 27.2 3.1 64 250-321 95-161 (177)
35 COG0034 PurF Glutamine phospho 23.4 78 0.0017 32.4 3.2 34 295-328 355-389 (470)
36 PRK13740 conjugal transfer pro 22.9 61 0.0013 24.5 1.8 9 129-137 43-51 (70)
37 PF00356 LacI: Bacterial regul 21.7 58 0.0013 22.3 1.4 20 298-317 25-44 (46)
38 PF07075 DUF1343: Protein of u 20.8 1.1E+02 0.0023 30.5 3.6 56 91-161 194-250 (365)
No 1
>PLN02883 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=4.3e-76 Score=576.21 Aligned_cols=315 Identities=62% Similarity=0.984 Sum_probs=293.3
Q ss_pred HHHH-hhhhhhccccccccCccccchhhhhhccccccCCCCCCCCCccCCCCCCCCCccccccCceEEEEecc-ceEECC
Q 020264 12 CLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQDCEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKG 89 (328)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~~g 89 (328)
.||+ |.|++.+++-.+..+.+.++.+++..++...+.......++..+++||++|+||.+|||||++++|.+ ++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~~~ 81 (384)
T PLN02883 2 ALRRCLPQSSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81 (384)
T ss_pred chhhhccccccchhhhhccccceeccccccccchhhhcccccccccccccCCchhcCcCCeecCceEEEEEcCCCcccCC
Confidence 4666 78888888878899999999999888875444444456777888999999999999999999999886 489999
Q ss_pred eEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCc
Q 020264 90 RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRW 169 (328)
Q Consensus 90 ~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~ 169 (328)
+|+|+++++++|++++||||||||||||+|+++||++++||+++|++||++||++|+||.++.++|.++|+++++.|+.|
T Consensus 82 ~i~p~~~l~l~p~a~~l~YGdgvFEg~kayr~~dG~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~lv~~n~~w 161 (384)
T PLN02883 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRW 161 (384)
T ss_pred eEeeCCCcccCccccHhhcceeeeeeEEEEECCCCCEeeeChhHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHH
Q 020264 170 VPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLK 249 (328)
Q Consensus 170 vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~ 249 (328)
||+.+++++||||+++++++.+|+.++.+++|+|+++|+++|+++|++++++.+++.++|++|++++++|++|||+++++
T Consensus 162 vp~~~~~~lYIRp~v~~~~~~lG~~~~~~~~~~i~~~p~~~y~~~g~~~v~l~~~~~~~Ra~~~g~g~~K~~~nYa~~ll 241 (384)
T PLN02883 162 VPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQNYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLE 241 (384)
T ss_pred CCCCCCceEEEEEEEEecCCccCCCCCCCeEEEEEEEecccccccCcceEEEEECccccccCCCCCcccchhhhHHHHHH
Confidence 99987789999999999988899998888999999999999998899999999988789999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 250 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 250 a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
++++|+++||||+||||+.++|+|+|++++|||++++++|+||+++++|||||||++||++|+++|++|+||+|+.+
T Consensus 242 a~~eA~~~G~de~L~Ld~~~~~~V~E~~~sNlF~v~~~~l~TP~l~~~iLpGITR~svl~la~~~G~~V~Er~i~~~ 318 (384)
T PLN02883 242 VMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVE 318 (384)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEeCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 99999999999999999855689999999999999999999999999999999999999999999999999999864
No 2
>PLN02259 branched-chain-amino-acid aminotransferase 2
Probab=100.00 E-value=6.6e-75 Score=568.84 Aligned_cols=318 Identities=67% Similarity=1.118 Sum_probs=294.9
Q ss_pred HHH-HHHHHH-hhhhhhccccccccCccccchhhhhhccccc-cCCCCCCCCCccCCCCCCCCCccccccCceEEEEecc
Q 020264 7 MIR-NACLRN-FSQSLRVGSAFLKSGDFCRYTSQAAASLQQD-CEPSAYSDDESADHMDWDNLGFGLTPADYMYTMKCSN 83 (328)
Q Consensus 7 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~ 83 (328)
||+ ..+||+ |+..++++. ..++.+.++.+++..++... ........+++.+++||++|+||.++||||++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~~td~m~~~~~~~ 78 (388)
T PLN02259 1 MIKTITSLRKTLVLPLHLHI--RTLQTFAKYNAQAASALREERKKPLYQNGDDVYADLDWDNLGFGLNPADYMYVMKCSK 78 (388)
T ss_pred CccchhhhhhheEeeeehhh--hhhhhhhhhccccccccchhhccccccccccccccCCccccCCCCcccCceEEEEECC
Confidence 667 788999 888888888 88899989999888877532 3333446677778999999999999999999999976
Q ss_pred -ceEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 020264 84 -DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQT 162 (328)
Q Consensus 84 -~~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~l 162 (328)
|+|.||+++|++++.++|.|++||||||||||||+|+.+||++++||+++|++||++||++|+||.++.++|.++|+++
T Consensus 79 ~~~w~~g~ivp~~~~~i~~~drgl~YGdgvFEglkayr~~~G~i~lfr~~~h~~RL~~SA~rL~lp~~~~e~~~~~i~~l 158 (388)
T PLN02259 79 DGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQT 158 (388)
T ss_pred CCeEECCEEeEchhCeeCchhhHHHhhhhhhhcEEEEECCCCeEeecCcHHHHHHHHHhHHHhCCCCcCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccC
Q 020264 163 ALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAIS 242 (328)
Q Consensus 163 v~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~ 242 (328)
++.|..|||+.+++++||||+++|+++.+|++|+.+++++|+++|+++|++.|++++++.+++++.|++|++++++|+++
T Consensus 159 v~~n~~~vp~~~~~~lyiRp~v~g~~~~lG~~p~~~~~~~i~~~p~~~~~~~g~~~i~l~v~~~~~Ra~p~~~g~~K~~~ 238 (388)
T PLN02259 159 ALANKRWVPPAGKGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGGAGGVKSIT 238 (388)
T ss_pred HHhccccCCCCCCceEEEEEEEEecCCccCcCCCCCcEEEEEEEechhhhhcCcceEEEEeecceeccCCCCCcccchhh
Confidence 99999999998778999999999998889999888899999999999999889888999887789999999999999988
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEe
Q 020264 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPL 322 (328)
Q Consensus 243 nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~ 322 (328)
||+++++++++|+++||||+||||+.++|+|+|++++|||+++|++|+||+++++|||||||++||++|+++|++|+||+
T Consensus 239 NY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~TP~l~~~iL~GITR~sIl~la~~~G~~V~Er~ 318 (388)
T PLN02259 239 NYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPATNGTILEGITRKSVMEIASDQGYQVVEKA 318 (388)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEEcCcEEEEEEECCEEEcCCCcCCcCcCHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999986789999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 020264 323 LFGT 326 (328)
Q Consensus 323 i~~~ 326 (328)
|+++
T Consensus 319 i~~~ 322 (388)
T PLN02259 319 VHVD 322 (388)
T ss_pred CCHH
Confidence 9864
No 3
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-74 Score=545.78 Aligned_cols=274 Identities=54% Similarity=0.931 Sum_probs=264.7
Q ss_pred CCCCCccCCCCCCCCCccccccCceEEEEeccceEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecCh
Q 020264 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (328)
Q Consensus 52 ~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl 131 (328)
...+.+...+||++|+||.+|||||++++|+.+.|..|+|.|++++.+||++.+|||||++||||||||++||++++|||
T Consensus 36 ~~~~~k~~~~d~~~L~fg~~~td~m~~~k~~~~gw~~~~I~p~gni~~~Paa~vlhy~~~lfEG~KAyRt~d~~i~LFrP 115 (379)
T KOG0975|consen 36 TQTDEKPAPIDWDELGFGLVFTDHMLTIKWSEDGWSQGEISPFGNLSLHPAAKVLHYGQGLFEGLKAYRTEDGKIRLFRP 115 (379)
T ss_pred ccCCCccCcCCHHHhccCCcccceeEEEeccccCcCCCCccCcCCEeeChhhhceecchhhccccccccCCCCeEEEecc
Confidence 34567778899999999999999999999997789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCcc
Q 020264 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (328)
Q Consensus 132 ~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y 211 (328)
+.|++||++||.+++||.|+.++|.++|++++.+|++|||+.++++|||||+++|+++.+|++++++++|+++++|+++|
T Consensus 116 d~N~~Rm~~sA~r~~lP~p~~~e~ie~i~~lv~~~~~wVP~~~~~SLyirp~l~Gt~~~Lgv~~~~e~~l~vi~spvg~y 195 (379)
T KOG0975|consen 116 DQNMDRMLRSAERACLPSPDVEEFIEAIKQLVLADKEWVPPPGKGSLYIRPLLIGTDPVLGVSPAPEATLFVIVSPVGPY 195 (379)
T ss_pred hhhHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCcccCCCCCceEEEeeeeccCCcccccccCCcceEEEEEcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCE--E
Q 020264 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI--I 289 (328)
Q Consensus 212 ~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~--l 289 (328)
|+.|++++.|.+++.++|++|+|+|+.|.++||+++++++.||+++||+|+||||.. +++|+|+++||||+|++|+ |
T Consensus 196 f~~g~~~v~L~v~~~~~Ra~pgg~g~~k~~~NY~P~vl~q~eA~~~G~~dvLwL~~d-~~~ItEv~tmNiF~v~~n~~el 274 (379)
T KOG0975|consen 196 FKSGFKGVNLLVDPEFVRAWPGGTGGVKLGGNYAPNVLAQKEAKSKGASDVLWLDGD-GGYITEVGTMNIFMVKKNEDEL 274 (379)
T ss_pred ccccccceEEEEecceeecCCCCCCceeeccccchHHHHHHHHHhcCcceeEEEecC-CCceeeccceeEEEEEcCceeE
Confidence 999999999999999999999999999999999999999999999999999999984 3499999999999999988 9
Q ss_pred EcCCCCCCCcchHHHHHHHHHHHHCC-CeEEEEeeecc
Q 020264 290 STPATSGTILAGITRKSIIEIASDCG-FQVRYPLLFGT 326 (328)
Q Consensus 290 iTP~l~~~ILpGITR~svlela~~~G-~~VeEr~i~~~ 326 (328)
+||++++.|||||||++|+|||+++| ++|+||.|+.+
T Consensus 275 vTPp~dg~ILpGvTR~sileLa~~~g~~~V~Er~vtv~ 312 (379)
T KOG0975|consen 275 VTPPLDGTILPGVTRKSILELARDLGEFKVEERDVTVD 312 (379)
T ss_pred ecCCCCCcccCCccHHHHHHHHHHhCceEEEEEEEeHH
Confidence 99999999999999999999999999 99999999864
No 4
>PLN02782 Branched-chain amino acid aminotransferase
Probab=100.00 E-value=7.4e-72 Score=549.67 Aligned_cols=274 Identities=71% Similarity=1.217 Sum_probs=260.0
Q ss_pred CCCCccCCCCCCCCCccccccCceEEEEecc-ceEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecCh
Q 020264 53 SDDESADHMDWDNLGFGLTPADYMYTMKCSN-DYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRP 131 (328)
Q Consensus 53 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~-~~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl 131 (328)
...+...++||++|+||+++||||++++|++ |+|.||+++|++++.|+|.|++||||||||||||+|+++||++++|||
T Consensus 62 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~w~ng~ivp~~~~~i~~~d~gl~YGdgvFEg~kayr~~~G~i~lFr~ 141 (403)
T PLN02782 62 TEVTELADIDWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYRKEDGNILLFRP 141 (403)
T ss_pred cCCcccccCCccccCCCccccCceEEEEECCCCcEeCCEEEECCCCEeChhhhHHhhhhhhhheEEEEEcCCCcEeeeCh
Confidence 3445567899999999999999999999965 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCcc
Q 020264 132 DQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNY 211 (328)
Q Consensus 132 ~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y 211 (328)
++|++||++||++|+||.++.++|.++|+++++.|+.|||+.+++++||||+++|+++.+|+.|+.+++++|+++|+++|
T Consensus 142 d~H~~RL~~SA~rL~lp~~~~e~l~~~i~~lv~~n~~~vP~~~~~~lyiRp~v~g~~~~lG~~~~~~~~~~i~~~p~~~~ 221 (403)
T PLN02782 142 EENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYIRPLLMGSGAVLGLAPAPEYTFLIYVSPVGNY 221 (403)
T ss_pred HHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCCcCcCCCCCcEEEEEEEECccc
Confidence 99999999999999999999999999999999999999999877899999999999888999988889999999999999
Q ss_pred ccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEc
Q 020264 212 FKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIST 291 (328)
Q Consensus 212 ~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liT 291 (328)
++.|++++++.+++++.|++|++++++|++|||+++++++++|+++||||+||||..++|+|+|++++|||++++++|+|
T Consensus 222 ~~~g~~~v~l~v~~~~~Ra~p~g~g~~Kt~~nY~~~l~a~~eA~~~G~de~L~Ld~~~~g~V~E~~~sNlF~v~~~~l~T 301 (403)
T PLN02782 222 FKEGVAPINLIVENEFHRATPGGTGGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVIST 301 (403)
T ss_pred cccCCccEEEEEeCceeecCCCCCcccchhhhHHHHHHHHHHHHHcCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEEc
Confidence 98899999999987799999999999999999999999999999999999999997568999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 292 PATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 292 P~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
|+++++|||||||++||++|+++|++|+||+|+.+
T Consensus 302 P~l~~~iLpGITR~svlela~~~Gi~V~Er~i~~~ 336 (403)
T PLN02782 302 PAIKGTILPGITRKSIIDVARSQGFQVEERNVTVD 336 (403)
T ss_pred CCCcCCcCcCHHHHHHHHHHHHcCCeEEEEECCHH
Confidence 99999999999999999999999999999999864
No 5
>PLN03117 Branched-chain-amino-acid aminotransferase; Provisional
Probab=100.00 E-value=6.3e-62 Score=473.42 Aligned_cols=274 Identities=61% Similarity=1.102 Sum_probs=249.8
Q ss_pred CCCCCccCCCCCCCCCccccccCceEEEEeccc-eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecC
Q 020264 52 YSDDESADHMDWDNLGFGLTPADYMYTMKCSND-YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFR 130 (328)
Q Consensus 52 ~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~-~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFr 130 (328)
...+....++||++||||.+|||||+.++|+++ .|.||+++|.+++.|++.|++|+||||||||||+|+..||++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~~~m~~~~~~~~~~~~ng~~v~~~~a~i~~~drgl~yGDGvFEtir~y~~~~G~i~lf~ 90 (355)
T PLN03117 11 SKADEKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFR 90 (355)
T ss_pred CCccccccccCccccCCCccccCceEEEEcCCCCeEECCEEEEchhceeCcchhhhhhcceeEeeEEEEECCCCcEeeeC
Confidence 345556677999999999999999999999876 7999999999999999999999999999999999988899999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCc
Q 020264 131 PDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGN 210 (328)
Q Consensus 131 l~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~ 210 (328)
+++|++||++||++|+||.++.++|.+.|.++++.|..|+|+.+.+.+||||+++|.++..|+.|+++..+++++.|+++
T Consensus 91 l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i~~lv~~n~~~i~~~~~~~~yir~~~~g~~~~~g~~~~~~~~~~i~~~p~~~ 170 (355)
T PLN03117 91 PDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGN 170 (355)
T ss_pred cHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccccCCCCCcEEEEEEEEEecCccCcCCCCCcEEEEEEEeccc
Confidence 99999999999999999988999999999999999999998876778999998887777778887777888999999877
Q ss_pred cccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEE
Q 020264 211 YFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIIS 290 (328)
Q Consensus 211 y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~li 290 (328)
++.. .+++++.+++++.|+.|.+++++|+++||+.++++.++|+++||||+|++|..++|+|+|++++|||+++|++|+
T Consensus 171 ~~~~-~~gi~l~~~~~~~r~~~~~l~~~K~~~nyl~~vla~~eA~~~G~deaL~ld~~~~g~v~E~~~sNlF~v~~~~l~ 249 (355)
T PLN03117 171 YHKA-SSGLNLKVDHKHRRAHSGGTGGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVS 249 (355)
T ss_pred cccC-CCCEEEEEcCceEeCCCCCccchhhhhhhHHHHHHHHHHHHCCCCEEEEEeCCCCCEEEEcCcEEEEEEECCEEE
Confidence 6542 367888876667899998999999977999999999999999999999999743479999999999999999999
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 291 TPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 291 TP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
||+++.+|||||||++||++|+++|++|+|++|+++
T Consensus 250 TP~l~~~iL~GItR~~vl~la~~~Gi~v~Er~i~~~ 285 (355)
T PLN03117 250 TPPTSGTILPGVTRKSISELARDIGYQVEERDVSVD 285 (355)
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHCCCEEEEEEccHH
Confidence 999999999999999999999999999999999874
No 6
>PRK13357 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.1e-57 Score=444.05 Aligned_cols=277 Identities=44% Similarity=0.800 Sum_probs=248.7
Q ss_pred CCCCCCCccCCCCCCCCCccccccCceEEEEeccceEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeec
Q 020264 50 SAYSDDESADHMDWDNLGFGLTPADYMYTMKCSNDYFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLF 129 (328)
Q Consensus 50 ~~~~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lF 129 (328)
.++.....+..+||++||||++.+|||++..|++|.|.||+++|.+++.|++.|++|+||||||||+|+|++.+|++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~vp~~~a~is~~Drg~~yGDGvFEtir~~~~~~G~~~~f 85 (356)
T PRK13357 6 KPNPTSDEKRAIDWANLGFGYVFTDHMVVIDYKDGKWHDARLVPYGPLELDPAATVLHYGQEIFEGLKAYRHKDGSIVLF 85 (356)
T ss_pred CCCcccccccCCCccccCCCccccceeEEEEecCCcccCCeEeeCCCceeCcccchhhhcceeeeeEEEEEcCCCcEeee
Confidence 34455556677899999999999999999999999999999999999999999999999999999999998889998899
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCC-CCCceEEEEEEEEecCCcccccCCCCcEEEEEEeec
Q 020264 130 RPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPP-PGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPV 208 (328)
Q Consensus 130 rl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~-~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~ 208 (328)
++++|++||.+||++|+||.++.+++.+.+.++++.|..++++ ..++.+|||+++.+++..+|+.+..++++++++.|.
T Consensus 86 ~l~~Hl~RL~~Sa~~L~i~~~~~~~l~~~i~~li~~n~~~~~~~~~~~~~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~ 165 (356)
T PRK13357 86 RPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGASLYLRPFMIATEPFLGVKPAEEYIFCVIASPV 165 (356)
T ss_pred ChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcccccCCCCCCccEEEEEEEEccCCcccccCCCccEEEEEEEec
Confidence 9999999999999999999779999999999999999876533 234589999988876666787766678899999988
Q ss_pred CccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCE
Q 020264 209 GNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNI 288 (328)
Q Consensus 209 ~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~ 288 (328)
++++..+.+++++.+...+.|..|..++++|+..||+.+++++++|+++||||+|++|+.++|+|+|++++|||++++++
T Consensus 166 ~~~~~~~~~~v~l~~~~~~~r~~~~~l~~~Kt~~nyl~~vla~~eA~~~G~deaL~ld~~~~G~V~E~s~sNlF~v~~~~ 245 (356)
T PRK13357 166 GAYFKGGVKPVSIWVSDEYDRAAPGGTGAAKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDG 245 (356)
T ss_pred hhhcccCCCceEEEEcCCeEecCCCCcchhhcccccHHHHHHHHHHHHCCCCEEEEEcCCCCCEEEEcCcEEEEEEECCE
Confidence 77766666788887765788998888899999669999999999999999999999996457999999999999999999
Q ss_pred EEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 289 ISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 289 liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
++||+++.+|||||||+.||++|+++|++|+|++++++
T Consensus 246 l~TPpl~~giL~GItR~~vlela~~~Gi~v~e~~i~~~ 283 (356)
T PRK13357 246 TVTPPLSGSILPGITRDSLLQLAEDLGLTVEERPVSID 283 (356)
T ss_pred EEECCCCCCCCcchHHHHHHHHHHHCCCeEEEEecCHH
Confidence 99999999999999999999999999999999999864
No 7
>TIGR01123 ilvE_II branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family.
Probab=100.00 E-value=4e-50 Score=384.41 Aligned_cols=241 Identities=49% Similarity=0.871 Sum_probs=214.5
Q ss_pred EECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 020264 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (328)
Q Consensus 86 w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~ 165 (328)
|.||+++|.+++.|++.|++|+||||||||||+|+..+|++++|++++|++||.+||++|+||.++.+.|.+.++++++.
T Consensus 1 ~~nG~~~~~~~a~i~~~Drg~~yGdGvFEtir~~~~~~g~~~~~~l~~Hl~RL~~sa~~L~i~~~~~~~l~~~l~~~~~~ 80 (313)
T TIGR01123 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRLLMPELPDELFLEALRQLVKA 80 (313)
T ss_pred CCCCEEEECccCeeCcchhHHHhhhhheeeeeEEECCCCcEeeeChHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997778999899999999999999999999977999999999999999
Q ss_pred cCCcCCCC-CCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCCh
Q 020264 166 NKRWVPPP-GKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNY 244 (328)
Q Consensus 166 ~~~~vP~~-~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY 244 (328)
|..++|+. .++.+|||+++++++..+|+++.+.+.++|++.|.++++..|.+++++.+...+.|..|..++++|+.+||
T Consensus 81 ~~~~~~~~~~~~~~~ir~~v~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~K~~~ny 160 (313)
T TIGR01123 81 NKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVFASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNY 160 (313)
T ss_pred ccccCCCCCCCCcEEEEeEEEecCCccccCCCCccEEEEEEEEchhhccccccceeEEecccceecCCCCCccceecccc
Confidence 98776543 24578999988877666788776678888999988777777777777766567788888878999996699
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEEC-CEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEee
Q 020264 245 APVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKG-NIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLL 323 (328)
Q Consensus 245 ~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~-~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i 323 (328)
..++++.++|+++||||+|++|++.+|+|+|++++|||++++ |+|+||+++.+|||||||+.|+++|+++|++|+|++|
T Consensus 161 l~~vla~~eA~~~g~deal~ld~~g~g~v~E~~~sNlf~v~~~g~l~Tp~l~~~~L~GItR~~vi~l~~~~Gi~v~e~~i 240 (313)
T TIGR01123 161 AASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRI 240 (313)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCeEEEEcCcEeEEEEEcCCEEEeCCCCCCCCcchHHHHHHHHHHHcCCeEEEEec
Confidence 999999999999999999999973224499999999999985 7999999999999999999999999999999999999
Q ss_pred ecc
Q 020264 324 FGT 326 (328)
Q Consensus 324 ~~~ 326 (328)
+++
T Consensus 241 ~~~ 243 (313)
T TIGR01123 241 DID 243 (313)
T ss_pred CHH
Confidence 864
No 8
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=100.00 E-value=2.6e-47 Score=362.48 Aligned_cols=230 Identities=30% Similarity=0.502 Sum_probs=200.4
Q ss_pred EECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Q 020264 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (328)
Q Consensus 86 w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv~ 164 (328)
|.||+++|..++.+++.|++|+||||+|||||+|++.+|. ++|++++|++||.+||++|+|+.+ +.+.+.+.+.++++
T Consensus 1 ~~ng~~v~~~~~~i~~~drg~~~GdgvFEt~r~~~g~~~~-~~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i~ 79 (298)
T TIGR01122 1 WMDGEFVDWEDAKVHVLTHALHYGTGVFEGIRAYDTDKGP-AIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79 (298)
T ss_pred CcCCEEEEhhhcccChhhhhhhccceEEEEEEEEcCCCcc-eeeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999765543 488999999999999999999966 79999999999999
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCccccCC--cccEEEEeeccceecCCCCC-CCCc
Q 020264 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG--LAPLNLYVEDEFHRATPGGA-GGVK 239 (328)
Q Consensus 165 ~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~y~~~G--~~~v~l~v~~~~~R~~p~~~-~~~K 239 (328)
.+.. ...|||++++++.+.+|+.|. .++++++++.|.+.++... .+++++.++ ++.|..+..+ +++|
T Consensus 80 ~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~l~~~-~~~r~~~~~~~~~~K 151 (298)
T TIGR01122 80 KNNL-------RSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVS-SWRRNAPNTIPTAAK 151 (298)
T ss_pred hcCC-------CCEEEEEEEEEccCCCCcCCCCCCCceEEEEEeccccccCcccccCCeEEEEE-EEEcCCCCCcCccch
Confidence 8863 357999888765556777763 3678888888886654321 246777775 4788777664 8999
Q ss_pred ccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEE
Q 020264 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319 (328)
Q Consensus 240 t~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~Ve 319 (328)
+.+||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++|++|+||+++.+||+||||+.|+++|+++|++|+
T Consensus 152 ~~~~yl~~v~a~~~a~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~~~~~~L~GItR~~il~la~~~g~~v~ 229 (298)
T TIGR01122 152 AGGNYLNSLLAKSEARRHGYDEAILLDV--EGYVAEGSGENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVV 229 (298)
T ss_pred hhhhhHHHHHHHHHHHHcCCCEEEEECC--CCCEEECCceEEEEEECCEEECCCCCCCcCcchHHHHHHHHHHHcCCcEE
Confidence 9866999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred EEeeecc
Q 020264 320 YPLLFGT 326 (328)
Q Consensus 320 Er~i~~~ 326 (328)
|++|+++
T Consensus 230 e~~i~~~ 236 (298)
T TIGR01122 230 EQPISRE 236 (298)
T ss_pred EEeCCHH
Confidence 9999864
No 9
>COG0115 IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.5e-46 Score=355.25 Aligned_cols=227 Identities=37% Similarity=0.580 Sum_probs=197.1
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|..++.+++.|+++|||++||||+|+|+ |+ +|++++|++||++||++|+||.+ +.+++....+.++
T Consensus 4 ~~~~g~~~~~~~~~~~~~~~~~~~g~~vFE~~r~~~---g~--~~~l~~H~~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~ 78 (284)
T COG0115 4 IWVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYN---GK--LFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLLL 78 (284)
T ss_pred EeECCEEccCcccccCcccceeccccceeEEEEEeC---Cc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999995 54 89999999999999999999998 5666666666666
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCccccCCc--ccEEEEeeccceecCCCCCC-CCcc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGL--APLNLYVEDEFHRATPGGAG-GVKA 240 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~~~G~--~~v~l~v~~~~~R~~p~~~~-~~Kt 240 (328)
+.+. |.+ .+|+||++++++..+|+.+..++.+.++++|+++|+..+. +++.+.+++.+ |..|.+++ .+|+
T Consensus 79 ~~~~-~~~-----~~y~r~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~k~ 151 (284)
T COG0115 79 AKNN-LVP-----GLYIRPLVRGGGGGLGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKT 151 (284)
T ss_pred HhhC-CCC-----ceEEEEEEEeecCCCCcCCCCccEEEEEEEecccccCcccccCCeEEEEeehh-hccCCCcchhhhh
Confidence 5554 322 3999999999998899988778999999999999988763 56666665444 54544444 4555
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEE-CCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEE
Q 020264 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319 (328)
Q Consensus 241 ~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~-~~~liTP~l~~~ILpGITR~svlela~~~G~~Ve 319 (328)
+||+++++++++|+++|+||+|++|. +|+|+|++++|||+++ ||+++||+++.+|||||||++||++|+++|++|+
T Consensus 152 -~~y~~~~~a~~~A~~~G~~eal~~~~--~G~V~Eg~~sNvf~v~~dg~~~TP~~~~~iL~GitR~~li~la~~~G~~v~ 228 (284)
T COG0115 152 -GNYLSSVLAKREAKAAGADEALLLDE--DGYVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVE 228 (284)
T ss_pred -cccHHHHHHHHHHHHCCCCEEEEecC--CCeEEEcCcceEEEEEECCEEECCCCCCCccccHHHHHHHHHHHHcCceEE
Confidence 69999999999999999999999996 8999999999999999 8899999999999999999999999999999999
Q ss_pred EEeeecc
Q 020264 320 YPLLFGT 326 (328)
Q Consensus 320 Er~i~~~ 326 (328)
|++|+.+
T Consensus 229 E~~i~~~ 235 (284)
T COG0115 229 ERPITLE 235 (284)
T ss_pred EeecCHH
Confidence 9998754
No 10
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=4.8e-46 Score=355.22 Aligned_cols=231 Identities=30% Similarity=0.507 Sum_probs=202.0
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|..++.+++.|++|+||||||||+|+|++++|+. +|+|++|++||.+||+.|+|+.+ +.+.+.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEtir~~~g~~~~~-~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 87 (306)
T PRK06606 9 IWFNGELVPWEDAKVHVLTHALHYGTGVFEGIRAYDTPKGPA-IFRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVV 87 (306)
T ss_pred EEECCEEEEhHHcccChhhhhhhhcceeEEEEEEecCCCCCe-eeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999998876764 78899999999999999999977 7899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC-CCcEEEEEEeecCcccc-CCc-ccEEEEeeccceecCCCC-CCCCc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFK-EGL-APLNLYVEDEFHRATPGG-AGGVK 239 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~-~~~~~~i~~~P~~~y~~-~G~-~~v~l~v~~~~~R~~p~~-~~~~K 239 (328)
+.+.. ...|||++++++...+|+.+. .++.+++.+.|.++++. .+. +++++.++ ++.|..+.. ++.+|
T Consensus 88 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~K 159 (306)
T PRK06606 88 RKNNL-------KSAYIRPLVFVGDEGLGVRPHGLPTDVAIAAWPWGAYLGEEALEKGIRVKVS-SWTRHAPNSIPTRAK 159 (306)
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCceEEEEEeccccccCcccccCCeEEEEe-eEecCCCCCcCcchh
Confidence 98763 367999888766556777654 35678888888766543 222 46777765 467777665 57899
Q ss_pred ccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEE
Q 020264 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319 (328)
Q Consensus 240 t~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~Ve 319 (328)
+.+||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++|++|+||+++.+|||||||+.|+++|+++|++|+
T Consensus 160 ~~~nyl~~vla~~ea~~~G~de~l~l~~--~g~v~E~~~sNlf~v~~~~l~TP~~~~giL~GitR~~vl~~~~~~g~~v~ 237 (306)
T PRK06606 160 ASGNYLNSILAKTEARRNGYDEALLLDV--EGYVSEGSGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVI 237 (306)
T ss_pred hhhccHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEECCCCcCCcCCCHHHHHHHHHHHHcCCcEE
Confidence 8779999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred EEeeecc
Q 020264 320 YPLLFGT 326 (328)
Q Consensus 320 Er~i~~~ 326 (328)
|++|+++
T Consensus 238 e~~i~~~ 244 (306)
T PRK06606 238 ERRITRD 244 (306)
T ss_pred EEeCCHH
Confidence 9999874
No 11
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=100.00 E-value=8.4e-46 Score=349.38 Aligned_cols=226 Identities=47% Similarity=0.811 Sum_probs=198.9
Q ss_pred ccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCce
Q 020264 98 ELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGS 177 (328)
Q Consensus 98 ~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~ 177 (328)
.+++.|++|+||||||||+|+|+..||+.++|++++|++||.+||+.|+|+.++.++|.+.+.++++.|+.|+|......
T Consensus 1 ~i~~~drg~~yGdgvFEtir~~~~~~g~g~~~~l~~Hl~RL~~sa~~l~i~~~~~~~l~~~i~~~i~~~~~~~~~~~~~~ 80 (279)
T cd01557 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFIDAIKELVKLDADWVPYGGGAS 80 (279)
T ss_pred CcCccccHhhcChhheeeEEEEecCCCCEeEECHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCC
Confidence 37899999999999999999997656655689999999999999999999966999999999999999999977655568
Q ss_pred EEEEEEEEecCCcccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhc
Q 020264 178 LYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNR 257 (328)
Q Consensus 178 lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~ 257 (328)
.|||++++++...+|+.+..++++++++.|.++++....+++++.++ ++.|..|...+.+|+..||+.++++.++|+++
T Consensus 81 ~~ir~~v~rg~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~K~~~nyl~~vla~~eA~~~ 159 (279)
T cd01557 81 LYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEKGVSALVS-SFRRAAPGGPGAAKAGGNYAASLLAQKEAAEK 159 (279)
T ss_pred EEEEEEEEeccccCCcCCCCccEEEEEEEEccccccCCCCCeEEEEe-eEEcCCCCCCcccchhhccHHHHHHHHHHHHC
Confidence 99999888766667777655678889999887765433356777766 57888887778899866999999999999999
Q ss_pred CCCeEEEEcCCCC-CeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 258 GFSDVLYLDSVNK-KNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 258 G~ddvL~ld~~~~-g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
|+||+|++|+ + |+|+|++++|||++++++|+||+++.++|+||||+.|+++|+++|++|+|++++++
T Consensus 160 g~de~l~ld~--~~g~v~E~~~sNlf~v~~~~l~TP~~~~~~L~Gitr~~v~~~~~~~Gi~v~e~~i~~~ 227 (279)
T cd01557 160 GYDQALWLDG--AHGYVAEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRD 227 (279)
T ss_pred CCCEEEEEcC--CCCEEEEeCcEEEEEEECCEEEcCCCcCCCCCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 9999999997 6 99999999999999999999999988999999999999999999999999999874
No 12
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=100.00 E-value=1.2e-45 Score=350.28 Aligned_cols=226 Identities=27% Similarity=0.454 Sum_probs=193.5
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|...+.+++.|++|+||||||||+|+| +|+ +|++++|++||++||++|+|+.+ +.+.+.+.+.+++
T Consensus 11 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~~i 85 (292)
T PRK07544 11 IWMDGELVPWRDAKVHVLTHGLHYASSVFEGERAY---GGK--IFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETL 85 (292)
T ss_pred EEECCEEEEhHHCccChhhhHhhhcceeEEeeEee---CCc--ccChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 565 78899999999999999999976 7899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCCC-CcEEEEEEeecCcccc--CCcccEEEEeeccceecCCCCC-CCCc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAP-EYTFLVFASPVGNYFK--EGLAPLNLYVEDEFHRATPGGA-GGVK 239 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~-~~~~~i~~~P~~~y~~--~G~~~v~l~v~~~~~R~~p~~~-~~~K 239 (328)
+.+.. ...|||++++.+.+.+|+.+.. ...++|...|.++++. .+.+++++.++ ++.|..|..+ +.+|
T Consensus 86 ~~~~~-------~~~~ir~~v~rg~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~gv~l~~~-~~~r~~~~~~~~~~k 157 (292)
T PRK07544 86 AANGL-------TDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIA-KWRRPDPETAPSAAK 157 (292)
T ss_pred HhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEeccccccCccccCCCEEEEEe-EEEcCCCCCcCHhhh
Confidence 98863 3568998887655556776543 3556666666654442 33457778775 4677766654 5679
Q ss_pred ccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEE
Q 020264 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319 (328)
Q Consensus 240 t~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~Ve 319 (328)
++|||..+++++++|+++|+||+|++|. +|+|+|++++|||+++||+|+||+++ ++||||||+.|+++|+++|++|+
T Consensus 158 ~~~~yl~~vla~~~A~~~G~deal~ld~--~g~V~E~~~sNlf~v~~~~l~TP~~~-~~L~GItR~~vl~~a~~~g~~v~ 234 (292)
T PRK07544 158 AAGLYMICTISKHAAEAKGYADALMLDY--RGYVAEATGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVV 234 (292)
T ss_pred hhcccHHHHHHHHHHHHcCCCeEEEECC--CCCEEEcCceEEEEEECCEEECCCCc-ccccchhHHHHHHHHHHcCCeEE
Confidence 8889999999999999999999999997 89999999999999999999999985 59999999999999999999999
Q ss_pred EEeeecc
Q 020264 320 YPLLFGT 326 (328)
Q Consensus 320 Er~i~~~ 326 (328)
|++++++
T Consensus 235 e~~i~~~ 241 (292)
T PRK07544 235 ERHIMPE 241 (292)
T ss_pred EEecCHH
Confidence 9999864
No 13
>PRK12479 branched-chain amino acid aminotransferase; Provisional
Probab=100.00 E-value=3.3e-45 Score=348.49 Aligned_cols=223 Identities=26% Similarity=0.402 Sum_probs=194.0
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|...+.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 6 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 80 (299)
T PRK12479 6 IYMNGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSY---GGN--VFCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTL 80 (299)
T ss_pred EEECCEEeEHHHCccccccchhheeeeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 566 78899999999999999999876 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCcc----ccCCcccEEEEeeccceecCCCCC-C
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNY----FKEGLAPLNLYVEDEFHRATPGGA-G 236 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~y----~~~G~~~v~l~v~~~~~R~~p~~~-~ 236 (328)
+.+.. ...|||+++.++++.+|+.+. .+++++|++.|.+.+ +..| +++.+. .+.|..|+.+ .
T Consensus 81 ~~~~~-------~~~~ir~~v~rg~g~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~g---v~~~~~-~~~r~~~~~~~~ 149 (299)
T PRK12479 81 QKNEY-------ADAYIRLIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNG---LSVVSV-ASRRNTPDALDP 149 (299)
T ss_pred HHcCC-------CCeEEEEEEEecCCCCCCCCccCCCceEEEEEEEcccCChhHHhCC---eEEEEE-eEeccCCCccCc
Confidence 98752 356899888765556777654 356788888876532 3344 455554 4678777665 6
Q ss_pred CCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCC
Q 020264 237 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 316 (328)
Q Consensus 237 ~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~ 316 (328)
.+|+. ||..++++.++|+++|+||+||+|+ +|+|+|++++|||+++|++|+||+++.++||||||+.|+++|+++|+
T Consensus 150 ~~K~~-nyl~~vla~~ea~~~g~de~l~ld~--~g~v~E~s~sNlf~v~~~~l~TP~l~~giL~GItR~~il~~~~~~g~ 226 (299)
T PRK12479 150 RIKSM-NYLNNVLVKIEAAQAGVLEALMLNQ--QGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERLSI 226 (299)
T ss_pred cchhh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHcCC
Confidence 89996 9999999999999999999999997 89999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecc
Q 020264 317 QVRYPLLFGT 326 (328)
Q Consensus 317 ~VeEr~i~~~ 326 (328)
+|+|+.|+++
T Consensus 227 ~v~e~~i~~~ 236 (299)
T PRK12479 227 PCEERPFTRH 236 (299)
T ss_pred eEEEEeCCHH
Confidence 9999999874
No 14
>PRK08320 branched-chain amino acid aminotransferase; Reviewed
Probab=100.00 E-value=6.3e-45 Score=344.40 Aligned_cols=226 Identities=30% Similarity=0.439 Sum_probs=192.5
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||++++...+.+++.|++|+|||||||||+++ +|+ +|++++|++||.+||++|+|+.+ +.+.+.+++.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~~GdgvFEt~~v~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~~i 79 (288)
T PRK08320 5 IYLNGEFVPKEEAKVSVFDHGFLYGDGVFEGIRAY---NGR--VFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETL 79 (288)
T ss_pred EEECCEEEEHHHCcccccchhhhhcceEEEEEEEE---CCE--eecHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997 666 77899999999999999999766 7899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCccccC-CcccEEEEeeccceecCCCCC-CCCc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKE-GLAPLNLYVEDEFHRATPGGA-GGVK 239 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~y~~~-G~~~v~l~v~~~~~R~~p~~~-~~~K 239 (328)
+.+.. ...+||+.++++.+.+|+.|. .++.+++++.|.+++... --+++++.+. ++.|..+..+ .++|
T Consensus 80 ~~~~~-------~~~~iri~v~rg~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~r~~~~~~~~~~K 151 (288)
T PRK08320 80 RKNNL-------RDAYIRLVVSRGVGDLGLDPRKCPKPTVVCIAEPIGLYPGELYEKGLKVITV-STRRNRPDALSPQVK 151 (288)
T ss_pred HhcCC-------CCEEEEEEEEECCCcCCCCcccCCCceEEEEEEEcCcCChhHHhcCeEEEEE-eeeccCCCCcCccch
Confidence 98752 457888888765556777664 456777888776543220 0123445443 3567766554 6899
Q ss_pred ccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEE
Q 020264 240 AISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVR 319 (328)
Q Consensus 240 t~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~Ve 319 (328)
+. ||+.++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++.++||||||+.|+++|+++|++|+
T Consensus 152 ~~-nyl~~v~a~~~A~~~g~de~L~ld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~~~L~GitR~~ll~~~~~~g~~v~ 228 (288)
T PRK08320 152 SL-NYLNNILAKIEANLAGVDEAIMLND--EGYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNAVIEIAKELGIPVR 228 (288)
T ss_pred hh-hhHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCcEEEEEEECCEEECCCCcCCCCcCHHHHHHHHHHHHcCCeEE
Confidence 97 9999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred EEeeecc
Q 020264 320 YPLLFGT 326 (328)
Q Consensus 320 Er~i~~~ 326 (328)
|+.++++
T Consensus 229 e~~l~~~ 235 (288)
T PRK08320 229 EELFTLH 235 (288)
T ss_pred EEECCHH
Confidence 9999864
No 15
>PRK13356 aminotransferase; Provisional
Probab=100.00 E-value=6.8e-45 Score=344.12 Aligned_cols=225 Identities=24% Similarity=0.361 Sum_probs=187.6
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||++++.+.+.+++.|++|+||||||||+|+| +|+ +|++++|++||.+||++|+|+.+ +.+++.+.+.+++
T Consensus 9 ~~~nG~~~~~~~~~i~~~drg~~yGdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~i 83 (286)
T PRK13356 9 TFFDGEWHEGNVPIMGPADHAAWLGSTVFDGARAF---EGV--TPDLDLHCARVNRSAEALGLKPTVSAEEIEALAREGL 83 (286)
T ss_pred EEECCEEcchhhcccccccchhhhcceeEEEEEEe---cCC--CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 555 67899999999999999999865 8999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcc-cccCC-CCcEEEEEEeecCccccCCcccEEEEeeccceecCCCC-CCCCcc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPIL-GLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGG-AGGVKA 240 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~l-g~~p~-~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~-~~~~Kt 240 (328)
+.+.. ....|||++++.+.... |+.+. ....+.+...+.+.... +++++.++ ++.|..+.. .+.+|+
T Consensus 84 ~~~~~------~~~~~ir~~v~rg~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~gv~l~~~-~~~r~~~~~~~~~~K~ 153 (286)
T PRK13356 84 KRFDP------DTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEP---TGFSLTLS-PFRRPTLEMAPTDAKA 153 (286)
T ss_pred HHcCC------CCcEEEEEEEEeccCcccCcCCCcCCceEEEEEEccCCCCC---CcEEEEEe-eeecCCCCCCCcccee
Confidence 98752 23678998776443322 44343 23344454544432222 35677765 477776654 367898
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEE
Q 020264 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRY 320 (328)
Q Consensus 241 ~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeE 320 (328)
++||+.++++.++|+++|+||+||+|. +|+|+|++++|||+++|++|+||+++.+|||||||+.|+++|+++|++|+|
T Consensus 154 ~~nyl~~vla~~ea~~~g~deal~ld~--~G~v~E~~~sNlf~v~~~~l~TP~~~~~~L~GItR~~vi~~a~~~gi~v~e 231 (286)
T PRK13356 154 GCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNVFMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVE 231 (286)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCceEEEEEECCEEEcCCCCCCcccCHHHHHHHHHHHHcCCeEEE
Confidence 889999999999999999999999997 899999999999999999999999999999999999999999999999999
Q ss_pred Eeeecc
Q 020264 321 PLLFGT 326 (328)
Q Consensus 321 r~i~~~ 326 (328)
++++++
T Consensus 232 ~~i~~~ 237 (286)
T PRK13356 232 TTLTYE 237 (286)
T ss_pred EecCHH
Confidence 999864
No 16
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=100.00 E-value=1.9e-44 Score=337.66 Aligned_cols=222 Identities=24% Similarity=0.361 Sum_probs=186.6
Q ss_pred EECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHH
Q 020264 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTAL 164 (328)
Q Consensus 86 w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv~ 164 (328)
|.||+++|..++.+++.|++|+||||+|||||+| +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.++++
T Consensus 1 ~~nG~~~~~~~~~i~~~d~g~~~G~gvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 75 (270)
T cd01558 1 YLNGEYVPREEAKVSVFDRGFLFGDGVYEVIRVY---NGK--PFALDEHLDRLYRSAKELRIDIPYTREELKELIRELVA 75 (270)
T ss_pred CcCCeEeEHHHCccccccchhcccceEEEEEEEE---CCE--EecHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999998 566 78899999999999999999865 89999999999999
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCccccCC-cccEEEEeeccceecCCCCCCCCccc
Q 020264 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (328)
Q Consensus 165 ~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p--~~~~~~~i~~~P~~~y~~~G-~~~v~l~v~~~~~R~~p~~~~~~Kt~ 241 (328)
.+.. ..+.+|+|+ .+|.++ .|+.+ ...+.+++.+.|.++++... -+++++.+.+ +.|. ..+++|+.
T Consensus 76 ~~~~-----~~~~~~~~~-t~g~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~~~~~~-~~~~---~~~~~K~~ 144 (270)
T cd01558 76 KNEG-----GEGDVYIQV-TRGVGP-RGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVP-DIRW---LRCDIKSL 144 (270)
T ss_pred HcCC-----CCceEEEEE-EeCCCc-cCCCCCCCCCCEEEEEEEecCCCChhhhhcCeEEEEec-cccc---CCCCchhh
Confidence 8753 346788886 556553 45544 23457777888775322100 1345566553 3443 34689996
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEE
Q 020264 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYP 321 (328)
Q Consensus 242 ~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr 321 (328)
||..++++.++|+++|+||+|++|+ +|+|+|++++|||++++|+|+||+++.++|+||||+.|+++|+++|++|+|+
T Consensus 145 -ny~~~~~a~~~a~~~g~de~l~ld~--~g~v~E~~~sNif~~~~~~l~TP~~~~~~L~GitR~~vl~~a~~~g~~v~e~ 221 (270)
T cd01558 145 -NLLNNVLAKQEAKEAGADEAILLDA--DGLVTEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEER 221 (270)
T ss_pred -ccHHHHHHHHHHHHcCCCEEEEEcC--CCEEEEcCcEEEEEEECCEEECCCCcCCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred eeecc
Q 020264 322 LLFGT 326 (328)
Q Consensus 322 ~i~~~ 326 (328)
.|+++
T Consensus 222 ~i~~~ 226 (270)
T cd01558 222 PFSLE 226 (270)
T ss_pred eCCHH
Confidence 99864
No 17
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=1.2e-43 Score=335.08 Aligned_cols=223 Identities=23% Similarity=0.326 Sum_probs=190.3
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|..++.+++.|++|+||||+|||||+| +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.+++
T Consensus 2 ~~~nG~~~~~~~~~v~~~drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~l~~~~ 76 (283)
T PRK07650 2 IYVNGQYVEEEEARISPFDHGYLYGLGVFETFRIY---NGH--PFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLL 76 (283)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EEcHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999998 666 67799999999999999999976 7899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCccc-cCCcccEEEEeeccceecCCCCCCCCcc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYF-KEGLAPLNLYVEDEFHRATPGGAGGVKA 240 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~y~-~~G~~~v~l~v~~~~~R~~p~~~~~~Kt 240 (328)
+.++. ...|||+.+..+.+.+|+.+. ..++++++..|.++.. .....++.+ .+.|..++...++|+
T Consensus 77 ~~~~~-------~~~~iRl~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Kt 145 (283)
T PRK07650 77 EKNGL-------ENAYVRFNVSAGIGEIGLQTEMYEEPTVIVYMKPLAPPGLPAEKEGVVL----KQRRNTPEGAFRLKS 145 (283)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEEcCCCCChhhcCeEEEE----EEEecCCCCCcchhH
Confidence 88752 457889887765445666543 4567888888875322 111122222 356677777899999
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEE
Q 020264 241 ISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRY 320 (328)
Q Consensus 241 ~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeE 320 (328)
+ ||..++++.++|+++|+||+|++|. +|+|+|++++|||++++|+|+||+++.||||||||+.|+++|++.|++|+|
T Consensus 146 ~-~y~~~v~a~~~a~~~g~de~llln~--~G~v~E~s~sNif~v~~g~l~TP~l~~g~L~GitR~~li~~~~~~g~~v~e 222 (283)
T PRK07650 146 H-HYLNNILGKREIGNDPNKEGIFLTE--EGYVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKE 222 (283)
T ss_pred H-hHHHHHHHHHHHHHcCCCeEEEECC--CCeEEEcCceEEEEEECCEEEcCCCcCCCcccHHHHHHHHHHHHcCCeEEE
Confidence 6 9999999999999999999999997 899999999999999999999999999999999999999999999999999
Q ss_pred Eeeecc
Q 020264 321 PLLFGT 326 (328)
Q Consensus 321 r~i~~~ 326 (328)
+.|+++
T Consensus 223 ~~i~~~ 228 (283)
T PRK07650 223 GFYTKE 228 (283)
T ss_pred EecCHH
Confidence 999864
No 18
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=100.00 E-value=3.8e-43 Score=333.46 Aligned_cols=224 Identities=21% Similarity=0.266 Sum_probs=185.7
Q ss_pred eEECC-----eEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 020264 85 YFEKG-----RLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAV 159 (328)
Q Consensus 85 ~w~~g-----~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i 159 (328)
+|.|| +++|.+++.+++.|++++||||+||||+++ +|+ +|.+++|++||++||+.|+|+.++.+.|.+++
T Consensus 9 ~~~ng~~~~~~~~~~~~a~i~~~drg~~~GdgvFEt~rv~---~g~--i~~l~~Hl~RL~~Sa~~l~i~~~~~~~l~~~i 83 (292)
T PRK07849 9 VTLDPYGGSERVHDPSAPLLHADDLAAVRGDGVFETLLVR---DGR--PCNLEAHLERLARSAALLDLPEPDLDRWRRAV 83 (292)
T ss_pred EEECCCCccceEechHHCCccchhcchhccceEEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 79999 999999999999999999999999999998 566 66789999999999999999988889999999
Q ss_pred HHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEeecCccc-cCCcccEEEEeecc-----ceecCCC
Q 020264 160 KQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASPVGNYF-KEGLAPLNLYVEDE-----FHRATPG 233 (328)
Q Consensus 160 ~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P~~~y~-~~G~~~v~l~v~~~-----~~R~~p~ 233 (328)
.++++.+.. . ....+||+++..+.... ..+.+++.+.|+++.. ....+++++.+++. +.+..|.
T Consensus 84 ~~~v~~~~~---~--~~~~~iRl~v~~g~~~~-----~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~p~ 153 (292)
T PRK07849 84 ELAIEEWRA---P--EDEAALRLVYSRGRESG-----GAPTAWVTVSPVPERVARARREGVSVITLDRGYPSDAAERAPW 153 (292)
T ss_pred HHHHHHhcC---C--CCCeEEEEEEeCCCCCC-----CCCeEEEEEeecCccchhhccCCeEEEEEeccccCcccccCcc
Confidence 999987631 0 13557776554322221 2456788888875432 11124566666431 1123455
Q ss_pred CCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHH
Q 020264 234 GAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASD 313 (328)
Q Consensus 234 ~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~ 313 (328)
.+.++|+. ||..++++.++|+++|+||+|++|. +|+|+|++++|||+++|++|+||+++.||||||||+.|+++|++
T Consensus 154 ~~~~~Kt~-ny~~~i~a~~~A~~~g~dd~L~ld~--~G~v~E~s~~Nif~~~~g~l~TP~~~~giL~GItR~~vie~~~~ 230 (292)
T PRK07849 154 LLAGAKTL-SYAVNMAALRYAARRGADDVIFTST--DGYVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVARE 230 (292)
T ss_pred cccccchh-hhHHHHHHHHHHHHcCCCEEEEEcC--CCcEEECCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHH
Confidence 67889996 9999999999999999999999997 89999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeecc
Q 020264 314 CGFQVRYPLLFGT 326 (328)
Q Consensus 314 ~G~~VeEr~i~~~ 326 (328)
+|++|+||.|+++
T Consensus 231 ~g~~v~er~i~~~ 243 (292)
T PRK07849 231 KGWDCEYRALRPA 243 (292)
T ss_pred cCCceEEEECCHH
Confidence 9999999999864
No 19
>PRK06680 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=7e-43 Score=330.49 Aligned_cols=222 Identities=20% Similarity=0.310 Sum_probs=183.8
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|...+.+++.|++|+||||+|||||+| +|+ +|++++|++||.+||+.|+|+.+ +.+.+.+.+.+++
T Consensus 5 ~~~nG~~~~~~~~~i~~~drg~~yGdGvFEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~L~i~~~~~~~~l~~~i~~~~ 79 (286)
T PRK06680 5 AYVNGRYVNHREARVHIEDRGFQFADGIYEVCAVR---DGK--LVDLDRHLARLFRSLGEIRIAPPMTRAELVEVLRELI 79 (286)
T ss_pred EEECCEEEEHHHCcccccccccceeeEEEEEEEEE---CCE--EechHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998 676 67899999999999999999966 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCccccc-C--CCCcEEEEEEeecCccccC--CcccEEEEeeccceecCCCCCCCC
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-P--APEYTFLVFASPVGNYFKE--GLAPLNLYVEDEFHRATPGGAGGV 238 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~-p--~~~~~~~i~~~P~~~y~~~--G~~~v~l~v~~~~~R~~p~~~~~~ 238 (328)
++++. ..+.+|+++ .+|.+. .|.. | ..++.++|++.|+++|... -.+++++.+.+. .| ....++
T Consensus 80 ~~~~~-----~~~~lr~~v-trG~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~gv~~~~~~~-~~---~~~~~~ 148 (286)
T PRK06680 80 RRNRV-----REGLVYLQV-TRGVAR-RDHVFPAADVKPSVVVFAKSVDFARPAAAAETGIKVITVPD-NR---WKRCDI 148 (286)
T ss_pred HHcCC-----CceEEEEEE-EeCCCC-CCCCCCCCCCCcEEEEEEEeccccCChhHHhCCeEEEEecC-CC---CCCCCc
Confidence 98763 234555553 345442 3433 3 2457788888887652111 013455554432 22 234679
Q ss_pred cccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEE-ECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCe
Q 020264 239 KAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL-KGNIISTPATSGTILAGITRKSIIEIASDCGFQ 317 (328)
Q Consensus 239 Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v-~~~~liTP~l~~~ILpGITR~svlela~~~G~~ 317 (328)
|+. ||..++++.++|+++|+||+|++| +|+|+|++++|||++ +|++|+||+++.+|||||||++|+++|+++|++
T Consensus 149 Ks~-nyl~~vla~~eA~~~g~dd~l~ld---~g~v~E~~~sN~f~~~~~~~l~TP~~~~~iL~Gitr~~il~~a~~~g~~ 224 (286)
T PRK06680 149 KSV-GLLPNVLAKQAAKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAKELGLE 224 (286)
T ss_pred chh-ccHHHHHHHHHHHHCCCCEEEEec---CCEEEEcCcEEEEEEEECCEEEeCCCCCCCCcCHHHHHHHHHHHHcCCe
Confidence 997 899999999999999999999999 589999999999999 999999999999999999999999999999999
Q ss_pred EEEEeeecc
Q 020264 318 VRYPLLFGT 326 (328)
Q Consensus 318 VeEr~i~~~ 326 (328)
|+|++++++
T Consensus 225 v~e~~i~~~ 233 (286)
T PRK06680 225 VEERPFTLQ 233 (286)
T ss_pred EEEEcCCHH
Confidence 999999864
No 20
>TIGR03461 pabC_Proteo aminodeoxychorismate lyase. Members of this protein family are aminodeoxychorismate lyase (ADC lyase), EC 4.1.3.38, the PabC protein of PABA biosynthesis. PABA (para-aminobenzoate) is a precursor of folate, needed for de novo purine biosynthesis. This enzyme is a pyridoxal-phosphate-binding protein in the class IV aminotransferase family (pfam01063).
Probab=100.00 E-value=4.9e-43 Score=326.80 Aligned_cols=219 Identities=23% Similarity=0.297 Sum_probs=181.2
Q ss_pred EECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q 020264 86 FEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALA 165 (328)
Q Consensus 86 w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~ 165 (328)
|.||+. ...+++.|++|+||+|||||||++ +|+ +|++++|++||.+||+.|+||.++.+.+.+.+.++++.
T Consensus 1 ~~nG~~----~~~i~~~d~g~~~G~gvFEt~r~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~~~~~~~~ 71 (261)
T TIGR03461 1 WVNGVL----QTQISVSDRGLQYGDGCFTTAKVR---NGK--IELLDLHLERLQDAAARLGIPLPDWDALREEMAQLAAG 71 (261)
T ss_pred CcCCcc----cCccCcccccccccceeEEEEEEE---CCE--eccHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Confidence 788884 678999999999999999999997 676 67899999999999999999988899999999999986
Q ss_pred cCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCccccCC-cccEEEEeeccceecCCCCCCCCcccC
Q 020264 166 NKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAIS 242 (328)
Q Consensus 166 ~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p--~~~~~~~i~~~P~~~y~~~G-~~~v~l~v~~~~~R~~p~~~~~~Kt~~ 242 (328)
+. ..+||+.+.......|+.+ ..+..+++.+.|+++++... -+++++.+++ +.+..+..+.++|+.
T Consensus 72 ~~---------~~~ir~~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~Kt~- 140 (261)
T TIGR03461 72 YS---------LGVLKVIISRGSGGRGYSPPGCSDPTRIISVSPYPAHYSAWQQQGIRLGVSP-VRLGRNPLLAGIKHL- 140 (261)
T ss_pred CC---------CeEEEEEEecCCCCCCCCCCCCCCCcEEEEeccCcccChhHhcCCEEEEEec-cccCCCCCCcCcccc-
Confidence 52 2356655543222334433 34457788888876544321 1456777654 444444467899997
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEe
Q 020264 243 NYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPL 322 (328)
Q Consensus 243 nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~ 322 (328)
||..++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++.++|+||||+.|+++|++.|++|+|++
T Consensus 141 ~y~~~~~a~~~A~~~g~de~llln~--~g~v~E~s~sNif~~~~~~l~TP~~~~~~L~GItR~~il~~~~~~g~~v~E~~ 218 (261)
T TIGR03461 141 NRLEQVLIKAELENSEADEALVLDT--DGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALLPALGYEIEEVK 218 (261)
T ss_pred ccHHHHHHHHHhhhcCCCEEEEECC--CCCEEEeccEEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 020264 323 LFGT 326 (328)
Q Consensus 323 i~~~ 326 (328)
|+++
T Consensus 219 i~~~ 222 (261)
T TIGR03461 219 AGLE 222 (261)
T ss_pred cCHH
Confidence 9874
No 21
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=100.00 E-value=1.7e-42 Score=326.27 Aligned_cols=219 Identities=20% Similarity=0.336 Sum_probs=178.5
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|.+++.+++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.|.+++
T Consensus 2 ~~~nG~~~~~~~~~i~~~drgl~yGdgvFEtir~~---~g~--~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~ 76 (276)
T TIGR01121 2 VLWNGQLVEREEAKIDIEDRGYQFGDGVYEVIRVY---NGK--LFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELV 76 (276)
T ss_pred EEECCEEeEHHHCeecccccccccccEEEEEEEEE---CCE--EeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999998 565 78899999999999999999966 7999999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCccccc-CC--CCcEEEEEEeecCc---cccCCcccEEEEeeccceecCCCCCCC
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLA-PA--PEYTFLVFASPVGN---YFKEGLAPLNLYVEDEFHRATPGGAGG 237 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~-p~--~~~~~~i~~~P~~~---y~~~G~~~v~l~v~~~~~R~~p~~~~~ 237 (328)
+.+.. ..+.+|+.+ .+|.++ .|.. |. ....++++..|.+. .+..| +++.+..+ .| ....+
T Consensus 77 ~~~~~-----~~~~irl~~-~rg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---v~~~~~~~-~~---~~~~~ 142 (276)
T TIGR01121 77 EKNNL-----NTGHVYFQV-TRGVAP-RNHQFPAGTVKPVITAYTKEVPRPEENLEKG---VKAITVED-IR---WLRCD 142 (276)
T ss_pred HhcCC-----CceEEEEEE-EcCCCC-cCCCCCCCCCCcEEEEEEecccCChhHHhcC---eEEEEecC-CC---ccCCC
Confidence 98763 234555542 344332 3333 22 23456666666542 12334 44443322 22 22467
Q ss_pred CcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCe
Q 020264 238 VKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQ 317 (328)
Q Consensus 238 ~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~ 317 (328)
+|+. ||+.++++.++|+++|+||+|+++ +|+|+|++++|||+++||+|+||+++.++|+||||+.|+++|+++|++
T Consensus 143 ~K~~-nyl~~vla~~eA~~~g~de~l~~~---~g~v~E~~~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~a~~~g~~ 218 (276)
T TIGR01121 143 IKSL-NLLGNVLAKQEAHEKGAYEAILHR---GGTVTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIP 218 (276)
T ss_pred cchh-hhHHHHHHHHHHHHcCCCEEEEec---CCeEEecCceeEEEEECCEEEeCCCcCCCCcCHHHHHHHHHHHHCCCe
Confidence 9986 999999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecc
Q 020264 318 VRYPLLFGT 326 (328)
Q Consensus 318 VeEr~i~~~ 326 (328)
|+|++|+++
T Consensus 219 v~e~~i~~~ 227 (276)
T TIGR01121 219 VKEEPFTKE 227 (276)
T ss_pred EEEEeCCHH
Confidence 999999864
No 22
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=100.00 E-value=2.3e-42 Score=327.64 Aligned_cols=220 Identities=18% Similarity=0.231 Sum_probs=175.9
Q ss_pred eEECCeEeeCCC--cccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGK--IELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQ 161 (328)
Q Consensus 85 ~w~~g~ivp~~~--~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~ 161 (328)
.|.||+++|.++ ..|++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.+ +.+.+.+.+.+
T Consensus 7 ~~~ng~~v~~~~~~~~i~~~drgl~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~~l~~~l~~ 81 (290)
T PRK12400 7 VLWNDAVIDTTKQKTYIELEERGLQFGDGVYEVIRLY---KGN--FHLLDPHITRLYRSMEEIELTLPFSKAELITLLYK 81 (290)
T ss_pred EEECCEEechHHcCceeccccchhhhcceEEEEEEEE---CCE--ecccHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 899999999994 55999999999999999999998 566 67789999999999999999976 78999999999
Q ss_pred HHHHcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCc---cccCCcccEEEEeeccceecCCCCCC
Q 020264 162 TALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGN---YFKEGLAPLNLYVEDEFHRATPGGAG 236 (328)
Q Consensus 162 lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~---y~~~G~~~v~l~v~~~~~R~~p~~~~ 236 (328)
+++.++. ....+||+.+..+....|..++ ..+++++++.|.+. +... ++++...+ ..+....
T Consensus 82 ~~~~~~~------~~~~~iri~v~rG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~----~~~~~~~ 148 (290)
T PRK12400 82 LIENNNF------HEDGTIYLQVSRGVQARTHTFSYDVPPTIYAYITKKERPALWIEY---GVRAISEP----DTRWLRC 148 (290)
T ss_pred HHHhcCC------CCCEEEEEEEEeCCCCCCCCCCCCCCcEEEEEEecccCchhHHhc---CcEEEECC----CCCccCC
Confidence 9998752 1133455444432223444432 34556666654321 1223 34444322 1123346
Q ss_pred CCcccCChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCC
Q 020264 237 GVKAISNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGF 316 (328)
Q Consensus 237 ~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~ 316 (328)
++|+. ||+.++++.++|+++|+||+|++| +|+|+|++++|||+++|++|+||+++.++||||||+.||++|+++|+
T Consensus 149 ~~Kt~-nyl~~vla~~ea~~~g~deaL~l~---~g~v~E~t~sNif~v~~~~l~TPpl~~g~L~GItR~~llela~~~gi 224 (290)
T PRK12400 149 DIKSL-NLLPNILAATKAERKGCKEALFVR---NGTVTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRI 224 (290)
T ss_pred CCccc-ccHHHHHHHHHHHHcCCCEEEEEc---CCEEEEcCceEEEEEECCEEEeCCCCCCcCcCHHHHHHHHHHHHcCC
Confidence 78997 999999999999999999999996 69999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeecc
Q 020264 317 QVRYPLLFGT 326 (328)
Q Consensus 317 ~VeEr~i~~~ 326 (328)
+|+|++++++
T Consensus 225 ~v~E~~i~~~ 234 (290)
T PRK12400 225 PVQEELFSVR 234 (290)
T ss_pred cEEEEeCCHH
Confidence 9999999864
No 23
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=100.00 E-value=2.9e-42 Score=333.35 Aligned_cols=223 Identities=20% Similarity=0.239 Sum_probs=184.7
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTA 163 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv 163 (328)
.|.||+++|.+.+.|++.|++|+||||+||||+++ +|+ +|++++|++||.+||+.|+|+.+ +.+++.+.+.+++
T Consensus 43 ~~~nG~~v~~~~a~i~~~Drgl~~GdGvFETirv~---~G~--~~~le~Hl~RL~~Sa~~L~i~~p~~~~~l~~~i~~~i 117 (336)
T PLN02845 43 SVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIR---DGH--LYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTV 117 (336)
T ss_pred EEECCEEccHHHCcccccccceeecceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999997 666 78899999999999999999876 8899999999999
Q ss_pred HHcCCcCCCCCCceEEEEEEEEecCCcccccC--CCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCccc
Q 020264 164 LANKRWVPPPGKGSLYIRPLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAI 241 (328)
Q Consensus 164 ~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p--~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~ 241 (328)
+++.. ...+||+.+..+...+++.+ ..++++++++.|.+.+.. ..+++++.+++ +.|. +..+.++|+.
T Consensus 118 ~~~~~-------~~~~irl~vtrG~g~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~gv~l~~~~-~~~~-~~~~~~~Kt~ 187 (336)
T PLN02845 118 AASGC-------RNGSLRYWLSAGPGGFSLSPSGCSEPAFYAVVIEDTYAQD-RPEGVKVVTSS-VPIK-PPQFATVKSV 187 (336)
T ss_pred HhcCC-------CcEEEEEEEEeCCCCCCCCCCCCCCCEEEEEEcccccccc-ccCCeEEEEee-eeec-CCccccchhh
Confidence 98753 24567765543333455543 345678888877543221 12456666653 4553 3346789997
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEE-CCEEEcCCCCCCCcchHHHHHHHHHHHHC---C--
Q 020264 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILK-GNIISTPATSGTILAGITRKSIIEIASDC---G-- 315 (328)
Q Consensus 242 ~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~-~~~liTP~l~~~ILpGITR~svlela~~~---G-- 315 (328)
||..++++.++|+++|+||+|++|+ +|+|+|++++||||++ |++|+||+++ +||+||||+.||++|+++ |
T Consensus 188 -nyl~~vla~~eA~~~G~deaLlln~--~G~V~Egt~sNiF~v~~~~~l~TP~l~-~iL~GItR~~vlela~~~~~~G~~ 263 (336)
T PLN02845 188 -NYLPNALSQMEAEERGAFAGIWLDE--EGFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDL 263 (336)
T ss_pred -hhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCcceEEEEEECCEEEeCCCC-CcCccHHHHHHHHHHHhhhccCCc
Confidence 9999999999999999999999997 8999999999999885 9999999997 499999999999999986 8
Q ss_pred CeEEEEeeecc
Q 020264 316 FQVRYPLLFGT 326 (328)
Q Consensus 316 ~~VeEr~i~~~ 326 (328)
++|+|++++++
T Consensus 264 i~V~E~~i~~~ 274 (336)
T PLN02845 264 RGVKQRKISVE 274 (336)
T ss_pred eEEEEEecCHH
Confidence 99999999864
No 24
>cd01559 ADCL_like ADCL_like: 4-Amino-4-deoxychorismate lyase: is a member of the fold-type IV of PLP dependent enzymes that converts 4-amino-4-deoxychorismate (ADC) to p-aminobenzoate and pyruvate. Based on the information available from the crystal structure, most members of this subgroup are likely to function as dimers. The enzyme from E.Coli, the structure of which is available, is a homodimer that is folded into a small and a larger domain. The coenzyme pyridoxal 5; -phosphate resides at the interface of the two domains that is linked by a flexible loop. Members of this subgroup are found in Eukaryotes and bacteria.
Probab=100.00 E-value=2.6e-42 Score=320.01 Aligned_cols=206 Identities=29% Similarity=0.404 Sum_probs=175.7
Q ss_pred CCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEE
Q 020264 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRP 182 (328)
Q Consensus 103 ~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp 182 (328)
|++|+||||+|||||+| +|+ +|++++|++||.+||++|+||.++.+.+.+.+.++++.+.. ...+||+
T Consensus 1 Drg~~~GdgvFEt~~~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~i~~~~~-------~~~~ir~ 68 (249)
T cd01559 1 DRGFAYGDGVFETMRAL---DGR--LFLLDAHLARLERSARRLGIPEPDLPRLRAALESLLAANDI-------DEGRIRL 68 (249)
T ss_pred CCcccccceeEEEEEEE---CCE--EccHHHHHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHhCCC-------CceEEEE
Confidence 68999999999999998 566 67899999999999999999966899999999999998753 3568887
Q ss_pred EEEecCCcccccC--CCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCC
Q 020264 183 LLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFS 260 (328)
Q Consensus 183 ~~~g~~~~lg~~p--~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~d 260 (328)
++..++...|+.+ ..++.+++.+.|.++ ....+++++.+++ +.|..++.++++|+. ||+.++++.++|+++|+|
T Consensus 69 ~v~rg~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~-ny~~~~~a~~~a~~~g~d 144 (249)
T cd01559 69 ILSRGPGGRGYAPSVCPGPALYVSVIPLPP--AWRQDGVRLITCP-VRLGEQPLLAGLKHL-NYLENVLAKREARDRGAD 144 (249)
T ss_pred EEecCCCCCCCCCCCCCCCEEEEEeccCCH--HHHhCCcEEEEcc-cccCCCCCCCCcchh-hhHHHHHHHHHHHhcCCC
Confidence 7764433445544 345678888888754 1112456677654 677777889999996 999999999999999999
Q ss_pred eEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 261 DVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 261 dvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
|+||+|+ +|+|+|++++|||++++|+|+||+++.||||||||+.|+++|+++|++|+|++|+++
T Consensus 145 e~l~l~~--~g~v~E~~~~Nif~~~~~~~~TP~~~~g~L~Gitr~~~l~~~~~~g~~v~e~~i~~~ 208 (249)
T cd01559 145 EALFLDT--DGRVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLE 208 (249)
T ss_pred EEEEEcC--CCCEEEecceEEEEEECCEEECCCcccCccccHHHHHHHHHHHHcCceEEEEecCHH
Confidence 9999997 899999999999999999999999999999999999999999999999999999864
No 25
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=100.00 E-value=3.6e-42 Score=322.31 Aligned_cols=220 Identities=22% Similarity=0.264 Sum_probs=178.7
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~ 164 (328)
.|.||++ ...++++|++|+||||+||||+++ +|+ +|++++|++||++||+.|+||.++.+.+.+.+.+++.
T Consensus 2 ~~~nG~~----~~~i~~~d~g~~~GdgvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~l~~~~~ 72 (268)
T PRK06092 2 FWINGQP----QESLSVSDRSTQYGDGCFTTARVR---DGQ--VSLLSRHLQRLQDACERLAIPLDDWAQLEQEMKQLAA 72 (268)
T ss_pred EEECCcC----cCccCccccccccccceeeEEEEE---CCe--eccHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Confidence 5888886 468999999999999999999997 676 6778999999999999999998877888888887773
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC--CCcEEEEEEeecCccccCC-cccEEEEeeccceecCCCCCCCCccc
Q 020264 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA--PEYTFLVFASPVGNYFKEG-LAPLNLYVEDEFHRATPGGAGGVKAI 241 (328)
Q Consensus 165 ~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~--~~~~~~i~~~P~~~y~~~G-~~~v~l~v~~~~~R~~p~~~~~~Kt~ 241 (328)
.. ...+||+.+..+....|+.+. .++.+++++.|++++.... .+++++.+++ ..+..+..+.++|+.
T Consensus 73 ~~---------~~~~iri~v~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~gv~l~~~~-~~~~~~~~~~~~Kt~ 142 (268)
T PRK06092 73 EL---------ENGVLKVIISRGSGGRGYSPAGCAAPTRILSVSPYPAHYSRWREQGITLALCP-TRLGRNPLLAGIKHL 142 (268)
T ss_pred hC---------CCeEEEEEEEccCCCCCCCCCCCCCCeEEEEeccCCccChhHhhCCEEEEEec-cccCCCCCccCcchh
Confidence 21 234556555443334555543 4457888888886544311 2456677654 334334456789996
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEE
Q 020264 242 SNYAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYP 321 (328)
Q Consensus 242 ~nY~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr 321 (328)
||..++++.++|+++|+||+|++|+ +|+|+|++++|||+++||+|+||+++.++||||||+.|+++|+++|++|+|+
T Consensus 143 -ny~~~~~a~~~A~~~g~de~l~l~~--~g~v~E~s~sNif~v~~~~~~TP~~~~~~L~GitR~~vl~~~~~~g~~v~e~ 219 (268)
T PRK06092 143 -NRLEQVLIRAELEQTEADEALVLDS--EGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELLAQSGYPVVEV 219 (268)
T ss_pred -hhHHHHHHHHHHHhcCCCEEEEECC--CCCEEEccceEEEEEECCEEECCCccccCcccHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999997 8999999999999999999999999889999999999999999999999999
Q ss_pred eeecc
Q 020264 322 LLFGT 326 (328)
Q Consensus 322 ~i~~~ 326 (328)
.|+++
T Consensus 220 ~i~~~ 224 (268)
T PRK06092 220 DASLE 224 (268)
T ss_pred ECCHH
Confidence 99864
No 26
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=100.00 E-value=2e-41 Score=314.04 Aligned_cols=208 Identities=39% Similarity=0.603 Sum_probs=176.9
Q ss_pred CCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHcCCcCCCCCCceEEEE
Q 020264 103 SGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-PSIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (328)
Q Consensus 103 ~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~-~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIR 181 (328)
|++|+||||+||||+++ +|+ +|++++|++||.+||+.|+|+. ++.+.+.+.+.++++.+.. ...+||
T Consensus 1 drg~~~GdgvFEt~r~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~ir 68 (256)
T cd00449 1 DRGLHYGDGVFEGLRAG---KGR--LFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAANNG-------ASLYIR 68 (256)
T ss_pred CceeeccceEEEEEEEc---CcE--EEChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC-------CCEEEE
Confidence 68999999999999996 676 7789999999999999999994 5899999999999988642 467888
Q ss_pred EEEEecCCcccccC--CCCcEEEEEEeecCccccCCcccEEEEeeccceec-CCCCCCCCcccCChHHHHHHHHHHHhcC
Q 020264 182 PLLVGSGPILGLAP--APEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRA-TPGGAGGVKAISNYAPVLKAISRAKNRG 258 (328)
Q Consensus 182 p~~~g~~~~lg~~p--~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~-~p~~~~~~Kt~~nY~~~l~a~~eA~~~G 258 (328)
+.+.++...+|..+ +.++.+++++.|.+++.....+++++.+++. .|. .+..+.++|+. ||..++++.++|+++|
T Consensus 69 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~Kt~-~~~~~~~a~~~a~~~g 146 (256)
T cd00449 69 PLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPD-RRRAAPGGTGDAKTG-GNLNSVLAKQEAAEAG 146 (256)
T ss_pred EEEEecccccCCCCCCCCCcEEEEEEeeccccccccCCCeEEEEeee-EEeCCCCCCccchhh-CCHHHHHHHHHHHHcC
Confidence 88776554566653 3567888988888764111235677777654 443 56678999997 8899999999999999
Q ss_pred CCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 259 FSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 259 ~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
+||+|++|. +|+|+|++++|||++++++|+||+++.|+||||||+.||++|+++|++|+|+.++++
T Consensus 147 ~de~llld~--~g~v~E~s~sNlf~~~~~~l~TP~~~~g~L~GitR~~vl~~~~~~g~~v~e~~i~~~ 212 (256)
T cd00449 147 ADEALLLDD--NGYVTEGSASNVFIVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLD 212 (256)
T ss_pred CCEEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCcCcchhHHHHHHHHHHcCCeEEEEecCHH
Confidence 999999997 799999999999999999999999999999999999999999999999999999864
No 27
>PRK09266 hypothetical protein; Provisional
Probab=100.00 E-value=1e-39 Score=305.66 Aligned_cols=211 Identities=18% Similarity=0.188 Sum_probs=174.8
Q ss_pred eEECCeEeeCCCcccCCCCCccccCCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 020264 85 YFEKGRLSRYGKIELSPSSGVLNYGQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTAL 164 (328)
Q Consensus 85 ~w~~g~ivp~~~~~l~~~~~~l~yG~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~ 164 (328)
.|.||+++|..++. .+++||||+||||+++ +|+ +|++++|++||.+||++|.++.++.+.+.+.+.++++
T Consensus 5 ~~~nG~~~~~~~a~-----~~~~~GdgvFETir~~---~g~--~~~l~~Hl~RL~~sa~~l~~~~~~~~~l~~~l~~~~~ 74 (266)
T PRK09266 5 IELNGRPATAEDLA-----ALALANYGHFTSMQVR---DGR--VRGLDLHLQRLRRASRELFGAALDDDRVRAQLRAALA 74 (266)
T ss_pred EEECCEECCHHHhh-----hHhhccceEEEEEEEE---CCE--EcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 79999999998876 4999999999999997 666 6779999999999999987766689999999999984
Q ss_pred HcCCcCCCCCCceEEEEEEEEecCCcccccCC-CCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCC
Q 020264 165 ANKRWVPPPGKGSLYIRPLLVGSGPILGLAPA-PEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISN 243 (328)
Q Consensus 165 ~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~-~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~n 243 (328)
. . ....|||+.+.+..+.+|..+. .++++++.+.|..++.. +++++.+++ +.|. ..++|+. |
T Consensus 75 ~-~-------~~~~~ir~~v~r~~g~~~~~~~~~~~~~~i~~~~~~~~~~---~~v~l~~~~-~~r~----~~~~K~~-~ 137 (266)
T PRK09266 75 A-G-------PADASVRVTVFAPDFDFRNPLADVAPDVLVATSPPADGPA---GPLRLQSVP-YERE----LPHIKHV-G 137 (266)
T ss_pred c-C-------CCcEEEEEEEEecCcccCCCCCCCCceEEEEEecCCcCCC---CCeEEEEEE-eccc----CCCCCCC-C
Confidence 3 2 2367899887654445565332 45677888877654433 455666553 4554 3579997 7
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEee
Q 020264 244 YAPVLKAISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLL 323 (328)
Q Consensus 244 Y~~~l~a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i 323 (328)
|..++++.++|+++|+||+|++|. +|+|+|++++|||+++||+|+||+. ++||||||+.|+++|+++|++|+|+.+
T Consensus 138 ~l~~vla~~~a~~~g~de~l~ln~--~g~v~E~~~sNlf~v~~~~l~TP~~--~~L~GItR~~ll~~~~~~g~~v~e~~i 213 (266)
T PRK09266 138 TFGQLHLRRLAQRAGFDDALFVDP--DGRVSEGATWNLGFWDGGAVVWPQA--PALPGVTMALLQRGLERLGIPQRTRPV 213 (266)
T ss_pred cHHHHHHHHHHHHcCCCeEEEEcC--CCcEEEcCceEEEEEECCEEECCCC--CccchHHHHHHHHHHHHcCCeeEEEEC
Confidence 888999999999999999999997 8999999999999999999999984 799999999999999999999999999
Q ss_pred ecc
Q 020264 324 FGT 326 (328)
Q Consensus 324 ~~~ 326 (328)
+++
T Consensus 214 ~~~ 216 (266)
T PRK09266 214 TLA 216 (266)
T ss_pred CHH
Confidence 864
No 28
>PRK07546 hypothetical protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=236.16 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=144.8
Q ss_pred CcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCC
Q 020264 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGP 189 (328)
Q Consensus 110 ~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~ 189 (328)
.++||||+++ ++|+ ++++++|++||.+||+.|++|.+ .+.+.+.+.++++.+. +..++|..+.. ++
T Consensus 4 ~~lfETi~~~--~~G~--~~~l~~Hl~RL~~sa~~l~~~~~-~~~l~~~l~~~~~~~~--------~~~~vrl~~~~-~g 69 (209)
T PRK07546 4 FELIETLRWE--PGAG--FPRLDRHLARLERSARALGFPCD-PAAVRAKLAEAVAGAQ--------GPLRLRLTLAR-DG 69 (209)
T ss_pred ccEEEEEEEe--CCCC--cccHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhccC--------CCeEEEEEEcC-CC
Confidence 4699999985 1566 67799999999999999999974 6788889998887531 35677755432 21
Q ss_pred cccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcCCC
Q 020264 190 ILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDSVN 269 (328)
Q Consensus 190 ~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~~~ 269 (328)
.+.+...|+++.... .+.++.+.. ..+..+..+..+|+. ||..+.++.++|+++|+||+|++|.
T Consensus 70 ----------~~~i~~~p~~~~~~~--~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~v~a~~~a~~~g~de~l~l~~-- 133 (209)
T PRK07546 70 ----------RLTVETAPLPPLPPD--TVWRVAIAR-TRLDSADPLLRYKTT-RRAAYDAARAELPPAEADEVILLNE-- 133 (209)
T ss_pred ----------CEEEEEecCCCCCCC--CcEEEEEcC-cccCCCCcchhcccC-ChHHHHHHHHHHhhCCCCEEEEECC--
Confidence 355677776542221 223454443 345555567789996 9999999999999999999999997
Q ss_pred CCeEEeeCceeEEEEECCEEE-cCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 270 KKNLEEVSSCNIFILKGNIIS-TPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 270 ~g~V~E~s~sNif~v~~~~li-TP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
+|+|+|++++||||+++|+|+ ||+++.|+|+||||+.+++. .+|+|+.++++
T Consensus 134 ~G~v~E~s~~Ni~~~~~~~~~~TP~~~~g~L~Gi~R~~ll~~-----~~v~e~~i~~~ 186 (209)
T PRK07546 134 RGEVCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLDA-----GRAREAVLTVD 186 (209)
T ss_pred CCcEEEcCceeEEEEECCEEEECCCCcCCCCccHHHHHHHhh-----CCeEEEEcCHH
Confidence 899999999999999999999 99999999999999999984 67999998864
No 29
>PF01063 Aminotran_4: Aminotransferase class IV; InterPro: IPR001544 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C terminus side of the pyridoxal-phosphate-lysine. The D-amino acid transferases (D-AAT), which are among the members of this entry, are required by bacteria to catalyse the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity [, ]. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1EKV_A 2HGX_A 1EKP_A 1KTA_B 1KT8_B 2A1H_B 2HDK_A 2HGW_B 1EKF_B 2HG8_A ....
Probab=99.97 E-value=1.6e-30 Score=237.00 Aligned_cols=183 Identities=27% Similarity=0.346 Sum_probs=135.5
Q ss_pred cChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEecCCcccccCCCCcEEEEEEee
Q 020264 129 FRPDQNAIRLQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGSGPILGLAPAPEYTFLVFASP 207 (328)
Q Consensus 129 Frl~~Hl~RL~~Sa~~l~ip~~-~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~~~~lg~~p~~~~~~~i~~~P 207 (328)
|++++|++||.+||+.+ ++.+ +.+.+.+.++++++.+.. .+..|||+++.++++..+..+............
T Consensus 1 f~l~~Hl~Rl~~S~~~l-~~~~~~~~~l~~~i~~~~~~~~~------~~~~~ir~~v~~g~~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01063_consen 1 FFLDEHLERLRRSARAL-IGLPFSREELREIIQELLEANPD------QGEGYIRITVTRGGGPLGGSPPENSAPPPFSIA 73 (231)
T ss_dssp ETHHHHHHHHHHHHHHT-TTHSSHHHHHHHHHHHHHHHTTS------SSSEEEEEEEEETSSSSSSSECSEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHH-ccCCcCHHHHHHHHHHHHHHcCC------CCCcEEEEEEEcCCCCcCccCcccccccccccc
Confidence 67999999999999999 4433 789999999999998761 244599988887766666665443322221111
Q ss_pred cCccccCCcccEEEEeeccceecCCC-----CCCCCcccCChHHHHH-HHHHHHhcCCCeEEEEcCCCCCeEEeeCceeE
Q 020264 208 VGNYFKEGLAPLNLYVEDEFHRATPG-----GAGGVKAISNYAPVLK-AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNI 281 (328)
Q Consensus 208 ~~~y~~~G~~~v~l~v~~~~~R~~p~-----~~~~~Kt~~nY~~~l~-a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNi 281 (328)
..... +..........++.+. .++++|++ ||..+.+ +.++|+++|+||+|++|. +|+|+|++++||
T Consensus 74 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~Kt~-~~~~~~~~~~~~a~~~g~de~ll~d~--~G~v~E~~~sNi 145 (231)
T PF01063_consen 74 PPRRP-----PPPLVGSVGVRRASPPLPRPNPLPRHKTT-NRLANVLAALRAAREKGADEALLLDE--DGNVTEGSTSNI 145 (231)
T ss_dssp TCHHH-----HEEEEEECSEECETTTSE-TTTSTTS-BS-HHHHHHHHHHHHHHHTTSSEEEEEET--TSBEEEESSSEE
T ss_pred ccccC-----CcceeeeeeEEeccccccccCCCCCeeEC-CcchhhHHHHHHHHhcCcchhheecC--CCCcCCCCCccc
Confidence 11111 1111111222333332 37899997 7777776 777777999999999997 899999999999
Q ss_pred EEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 282 FILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 282 f~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
|+++||+|+||+++.||||||||+.|+++++++|++|+|++++++
T Consensus 146 f~~~~~~~~TP~~~~giL~Gitr~~ll~~~~~~g~~v~e~~i~~~ 190 (231)
T PF01063_consen 146 FFVKDGTLYTPPLDSGILPGITRQLLLELAKELGIPVEERPITLD 190 (231)
T ss_dssp EEEETTEEEEESGSSSSB--HHHHHHHHHHHHTTSEEEEE-BBHH
T ss_pred ccccCCEEEcCChhhhhccHHHHHHHHHHHHhCCCCcEEEEeCHH
Confidence 999999999999999999999999999999999999999999864
No 30
>PRK07101 hypothetical protein; Provisional
Probab=99.93 E-value=1.5e-24 Score=193.70 Aligned_cols=166 Identities=14% Similarity=0.168 Sum_probs=120.4
Q ss_pred CcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCC-C-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEEEEEEec
Q 020264 110 QGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPS-P-SIDQFIDAVKQTALANKRWVPPPGKGSLYIRPLLVGS 187 (328)
Q Consensus 110 ~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~-~-~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIRp~~~g~ 187 (328)
.++||||+++ +|+ ++++++|++||.+||+.+++.. + +.+.+.+.+.++ . ++..|+|.+. +.
T Consensus 3 ~~l~ETir~~---~g~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~~~~~~~~~~----~-------~~~~r~rl~~-~~ 65 (187)
T PRK07101 3 FPLFETIAIE---DGE--IQNLSYHQQRYERTLAEFYGKEAPFDLAEIIQPPTEL----Q-------EGLVRCRIDY-NA 65 (187)
T ss_pred CcceEEEeee---CCe--eccHHHHHHHHHHHHHHHcccCCcccHHHHhhchhhh----c-------CCCEEEEEEe-cC
Confidence 3699999996 666 6789999999999999998854 3 677777766554 1 2457888644 54
Q ss_pred CCcccccCCCCcEEEEEEeecCccccCCcccEEEEeeccceecCCCCCCCCcccCChHHHHHHHHHHHhcCCCeEEEEcC
Q 020264 188 GPILGLAPAPEYTFLVFASPVGNYFKEGLAPLNLYVEDEFHRATPGGAGGVKAISNYAPVLKAISRAKNRGFSDVLYLDS 267 (328)
Q Consensus 188 ~~~lg~~p~~~~~~~i~~~P~~~y~~~G~~~v~l~v~~~~~R~~p~~~~~~Kt~~nY~~~l~a~~eA~~~G~ddvL~ld~ 267 (328)
+. +-+...|..+.. .+++++...++ ..-.+|+. |+. .+....|++.|+||+|++|
T Consensus 66 g~-----------~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~Kt~-~r~--~~~~~~a~~~g~de~l~~~- 120 (187)
T PRK07101 66 EI-----------YQVQYFPYQRRP---IRSFQPVYCDD-------IDYSLKYT-DRS--ALNELFAQKGECDEIIIIK- 120 (187)
T ss_pred Cc-----------EEEEEEcCCCCC---cCceEEEecCC-------cccccccC-CHH--HHHHHHHHhCCCCEEEEEc-
Confidence 42 223333433221 12344433222 23378997 543 2344556678999999997
Q ss_pred CCCCeEEeeCceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEEeeecc
Q 020264 268 VNKKNLEEVSSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYPLLFGT 326 (328)
Q Consensus 268 ~~~g~V~E~s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr~i~~~ 326 (328)
+|+|+|++++|||+++|++|+||+ .++||||||+.+++ .| +|+|+.|+++
T Consensus 121 --~G~v~E~~~sNi~~~~~~~~~TP~--~~~L~Gi~R~~ll~----~~-~v~e~~i~~~ 170 (187)
T PRK07101 121 --NGLVTDTSIGNLAFFDGKQWFTPK--KPLLKGTQRARLLD----EG-KIKEKDITVE 170 (187)
T ss_pred --CCEEEEccceEEEEEECCEEEcCC--CCCccHHHHHHHHc----cC-CEEEEecCHH
Confidence 699999999999999999999999 48999999999997 35 8999998864
No 31
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.00 E-value=43 Score=24.23 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.2
Q ss_pred ccCceEEEEeccc------eEECCeEeeCC
Q 020264 72 PADYMYTMKCSND------YFEKGRLSRYG 95 (328)
Q Consensus 72 ~td~m~~~~~~~~------~w~~g~ivp~~ 95 (328)
-+|.|+.|.|-+| .+...+++|+.
T Consensus 26 ss~Gmy~C~Wf~g~g~~~~~F~ed~Lvp~~ 55 (60)
T COG5475 26 SSDGMYECRWFDGYGVKREAFHEDELVPGE 55 (60)
T ss_pred ccCCeEEEEEecCCCcccccccccceeccc
Confidence 3679999999885 47777777754
No 32
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.73 E-value=1.1e+02 Score=25.84 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCCC-CHHHHHHHHHHHHHHcCCcCCCCCCceEEEE
Q 020264 138 LQTGAERMCMPSP-SIDQFIDAVKQTALANKRWVPPPGKGSLYIR 181 (328)
Q Consensus 138 L~~Sa~~l~ip~~-~~e~l~~~i~~lv~~~~~~vP~~~~~~lyIR 181 (328)
|+.++..|++..+ +.+++.+--+.|.+.|.. ..+|+.||.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdk----skGGSFYLQ 98 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDK----SKGGSFYLQ 98 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCc----ccCcceeeh
Confidence 6889999999876 899999999999998864 246899996
No 33
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=30.29 E-value=41 Score=24.42 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred CceeEEEEECCEEEcCCCCCCCcchHHHHHHHHHHHHCC
Q 020264 277 SSCNIFILKGNIISTPATSGTILAGITRKSIIEIASDCG 315 (328)
Q Consensus 277 s~sNif~v~~~~liTP~l~~~ILpGITR~svlela~~~G 315 (328)
.-++++++.|++.+--.|.+-+|-|+--...-++|.+.|
T Consensus 30 ~~~~f~ivi~~q~i~velkdivlvgvdvgqfh~wceqng 68 (68)
T PF13051_consen 30 LESHFAIVIGEQSIDVELKDIVLVGVDVGQFHEWCEQNG 68 (68)
T ss_pred cCCcEEEEECCeEEEEEeeeEEEEEecHHHHHHHHhhCC
Confidence 346788888888888888888999998888888887754
No 34
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=23.88 E-value=79 Score=27.23 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCeEEeeCceeEEEE---ECCEEEcCCCCCCCcchHHHHHHHHHHHHCCCeEEEE
Q 020264 250 AISRAKNRGFSDVLYLDSVNKKNLEEVSSCNIFIL---KGNIISTPATSGTILAGITRKSIIEIASDCGFQVRYP 321 (328)
Q Consensus 250 a~~eA~~~G~ddvL~ld~~~~g~V~E~s~sNif~v---~~~~liTP~l~~~ILpGITR~svlela~~~G~~VeEr 321 (328)
+...|++.|++-++.=.. -+...+....|+.-. .+-.+++|-+ +++++-|+++++++|+.+--+
T Consensus 95 ~~~~A~~~g~~~I~~G~~--~~D~~~~~~~~l~~~~~~~~~~i~rPl~------~~~K~eI~~~a~~~gl~~~~~ 161 (177)
T cd01712 95 AEKLAEELGADAIVTGES--LGQVASQTLENLLVISSGTDLPILRPLI------GFDKEEIIGIARRIGTYDISI 161 (177)
T ss_pred HHHHHHHcCCCEEEEccC--cccchHHHHHhhhhcccCCCCeEECCCC------CCCHHHHHHHHHHcCCcceec
Confidence 556788899885444222 233445555665532 3567888853 789999999999999866444
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=23.35 E-value=78 Score=32.37 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCcchHHHHHHHHHHHHCC-CeEEEEeeecccC
Q 020264 295 SGTILAGITRKSIIEIASDCG-FQVRYPLLFGTIR 328 (328)
Q Consensus 295 ~~~ILpGITR~svlela~~~G-~~VeEr~i~~~~~ 328 (328)
+++|..|+|-+.|++++++.| -+|+-|-=+|.|+
T Consensus 355 DDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~ 389 (470)
T COG0034 355 DDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIR 389 (470)
T ss_pred ccccccCccHHHHHHHHHHhCCCEEEEEecCCCcc
Confidence 589999999999999999999 5788877777664
No 36
>PRK13740 conjugal transfer protein TraY; Provisional
Probab=22.93 E-value=61 Score=24.46 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=5.3
Q ss_pred cChHHHHHH
Q 020264 129 FRPDQNAIR 137 (328)
Q Consensus 129 Frl~~Hl~R 137 (328)
+|+.+|+.|
T Consensus 43 lRL~DHL~r 51 (70)
T PRK13740 43 IRLRDHLKR 51 (70)
T ss_pred HHHHHHHHh
Confidence 456666666
No 37
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.68 E-value=58 Score=22.30 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.7
Q ss_pred CcchHHHHHHHHHHHHCCCe
Q 020264 298 ILAGITRKSIIEIASDCGFQ 317 (328)
Q Consensus 298 ILpGITR~svlela~~~G~~ 317 (328)
.+.-=||+.|++.++++||.
T Consensus 25 ~vs~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 25 RVSEETRERILEAAEELGYR 44 (46)
T ss_dssp SSTHHHHHHHHHHHHHHTB-
T ss_pred CCCHHHHHHHHHHHHHHCCC
Confidence 44556899999999999974
No 38
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.85 E-value=1.1e+02 Score=30.47 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=38.3
Q ss_pred EeeCCCcccCCCCCcccc-CCcEEEEEEEEEecCCeEeecChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 020264 91 LSRYGKIELSPSSGVLNY-GQGLFEGMKAYRKEDGQLVLFRPDQNAIRLQTGAERMCMPSPSIDQFIDAVKQ 161 (328)
Q Consensus 91 ivp~~~~~l~~~~~~l~y-G~gvFEgmkay~~~dG~i~lFrl~~Hl~RL~~Sa~~l~ip~~~~e~l~~~i~~ 161 (328)
|++.++ .++-.+.++.| |.++||+..+--|+ |..+.| +.+|-|..+.+.+.+.+.+
T Consensus 194 wv~PSP-Nlpt~~sa~lYpg~~l~EgtnlSeGR-GTt~PF-------------e~iGAP~id~~~la~~ln~ 250 (365)
T PF07075_consen 194 WVPPSP-NLPTLESALLYPGTCLFEGTNLSEGR-GTTRPF-------------EIIGAPWIDPERLAAELNA 250 (365)
T ss_pred CCCCCC-CCCChhHHhhccceeEeccccccccc-CCCccc-------------eeeCCCCCCHHHHHHHHHh
Confidence 344443 67788889999 99999998774332 445556 3578887787777665554
Done!