Query 020265
Match_columns 328
No_of_seqs 332 out of 1382
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2730 BglC Endoglucanase [Ca 99.7 9.3E-18 2E-22 166.9 7.8 106 202-309 46-154 (407)
2 cd00257 Fascin Fascin-like dom 99.7 6.6E-17 1.4E-21 133.8 10.9 113 67-187 2-114 (119)
3 PF06268 Fascin: Fascin domain 99.6 8.4E-15 1.8E-19 120.5 8.2 103 78-187 3-106 (111)
4 PF00150 Cellulase: Cellulase 99.3 1.1E-12 2.4E-17 121.6 5.2 77 222-299 13-90 (281)
5 cd00257 Fascin Fascin-like dom 98.9 9E-09 1.9E-13 85.0 8.9 71 112-187 3-73 (119)
6 PF06229 FRG1: FRG1-like famil 98.4 1.3E-06 2.8E-11 78.9 8.9 82 99-186 26-109 (191)
7 PF06268 Fascin: Fascin domain 98.4 4E-07 8.6E-12 74.8 5.1 77 66-149 35-111 (111)
8 TIGR03356 BGL beta-galactosida 98.2 1.4E-06 3E-11 87.7 5.9 67 223-292 50-116 (427)
9 PRK09852 cryptic 6-phospho-bet 97.8 4E-05 8.7E-10 78.2 6.1 67 223-292 67-134 (474)
10 PF06229 FRG1: FRG1-like famil 97.7 6.3E-05 1.4E-09 68.0 5.9 108 35-152 4-118 (191)
11 PF02449 Glyco_hydro_42: Beta- 97.7 4.7E-05 1E-09 75.0 5.2 61 230-295 11-73 (374)
12 PRK15014 6-phospho-beta-glucos 97.5 0.00021 4.6E-09 73.0 6.9 69 221-292 63-132 (477)
13 COG2723 BglB Beta-glucosidase/ 97.1 0.0011 2.3E-08 67.2 6.3 66 224-292 56-122 (460)
14 PRK13511 6-phospho-beta-galact 97.0 0.0014 3.1E-08 66.8 6.4 68 222-292 49-116 (469)
15 PF00232 Glyco_hydro_1: Glycos 97.0 0.0007 1.5E-08 68.7 4.0 67 223-292 54-121 (455)
16 PF07745 Glyco_hydro_53: Glyco 96.9 0.0028 6E-08 62.0 7.2 55 231-292 26-80 (332)
17 TIGR01233 lacG 6-phospho-beta- 96.8 0.0023 4.9E-08 65.4 6.3 68 222-292 48-115 (467)
18 COG3867 Arabinogalactan endo-1 96.8 0.0032 7E-08 60.4 6.8 57 232-292 66-126 (403)
19 PLN02998 beta-glucosidase 96.8 0.0025 5.4E-08 65.6 6.2 68 222-292 77-144 (497)
20 PRK09589 celA 6-phospho-beta-g 96.7 0.0026 5.6E-08 65.1 6.3 67 223-292 63-130 (476)
21 PRK09593 arb 6-phospho-beta-gl 96.7 0.0028 6E-08 64.9 6.2 67 223-292 69-136 (478)
22 PLN02814 beta-glucosidase 96.7 0.0029 6.3E-08 65.2 6.1 67 223-292 73-139 (504)
23 PLN02849 beta-glucosidase 96.6 0.0028 6.1E-08 65.3 5.7 66 224-292 76-141 (503)
24 PF01301 Glyco_hydro_35: Glyco 96.3 0.0051 1.1E-07 59.7 5.0 57 232-290 27-83 (319)
25 PF04601 DUF569: Protein of un 96.2 0.067 1.4E-06 46.2 10.6 105 65-174 6-118 (142)
26 smart00642 Aamy Alpha-amylase 96.2 0.018 3.9E-07 50.7 7.2 57 234-291 24-91 (166)
27 PF00128 Alpha-amylase: Alpha 95.9 0.015 3.2E-07 54.0 5.8 58 233-290 8-72 (316)
28 TIGR01515 branching_enzym alph 95.7 0.023 4.9E-07 60.0 6.7 54 235-290 163-226 (613)
29 TIGR02402 trehalose_TreZ malto 95.5 0.03 6.6E-07 58.2 6.7 55 234-290 116-180 (542)
30 PRK12313 glycogen branching en 95.3 0.035 7.6E-07 58.7 6.6 54 235-290 177-240 (633)
31 COG1523 PulA Type II secretory 95.2 0.051 1.1E-06 58.0 7.5 80 220-300 191-297 (697)
32 PLN00196 alpha-amylase; Provis 94.8 0.098 2.1E-06 53.0 7.7 59 233-292 48-117 (428)
33 PRK05402 glycogen branching en 94.7 0.064 1.4E-06 57.7 6.6 54 235-290 272-335 (726)
34 COG1874 LacA Beta-galactosidas 94.6 0.044 9.6E-07 58.2 4.8 52 232-288 33-86 (673)
35 COG0296 GlgB 1,4-alpha-glucan 94.5 0.072 1.6E-06 56.2 6.1 58 231-290 167-234 (628)
36 PRK10933 trehalose-6-phosphate 94.4 0.1 2.2E-06 54.4 7.2 58 233-292 37-103 (551)
37 TIGR02403 trehalose_treC alpha 94.4 0.11 2.4E-06 54.0 7.4 57 233-290 31-95 (543)
38 PLN02960 alpha-amylase 94.3 0.085 1.8E-06 57.5 6.3 58 231-290 419-486 (897)
39 PRK12568 glycogen branching en 94.3 0.092 2E-06 56.4 6.5 57 232-290 273-339 (730)
40 PLN02361 alpha-amylase 94.0 0.17 3.6E-06 50.9 7.3 59 233-292 33-101 (401)
41 TIGR02100 glgX_debranch glycog 93.9 0.11 2.3E-06 55.7 6.1 56 234-290 189-265 (688)
42 PRK10785 maltodextrin glucosid 93.7 0.15 3.3E-06 53.7 6.7 58 233-292 183-248 (598)
43 PLN02447 1,4-alpha-glucan-bran 93.6 0.14 3E-06 55.3 6.5 59 231-290 253-320 (758)
44 PRK03705 glycogen debranching 93.6 0.14 3.1E-06 54.5 6.4 56 234-290 184-262 (658)
45 PRK14705 glycogen branching en 93.5 0.15 3.2E-06 57.7 6.6 57 233-290 770-835 (1224)
46 PRK09505 malS alpha-amylase; R 93.4 0.21 4.6E-06 53.4 7.3 57 234-292 235-314 (683)
47 TIGR02456 treS_nterm trehalose 93.3 0.24 5.2E-06 51.4 7.4 58 234-292 33-98 (539)
48 PRK09441 cytoplasmic alpha-amy 93.1 0.23 5E-06 50.7 6.9 59 230-290 24-101 (479)
49 PRK14706 glycogen branching en 92.9 0.22 4.7E-06 53.0 6.4 55 235-290 174-237 (639)
50 PLN02784 alpha-amylase 92.6 0.59 1.3E-05 51.1 9.2 63 232-296 524-596 (894)
51 TIGR02104 pulA_typeI pullulana 92.4 0.26 5.7E-06 51.9 6.3 57 233-290 168-249 (605)
52 PF04601 DUF569: Protein of un 92.4 0.64 1.4E-05 40.2 7.6 61 111-173 8-68 (142)
53 COG0366 AmyA Glycosidases [Car 92.4 0.21 4.6E-06 50.1 5.5 58 233-292 33-99 (505)
54 PF00167 FGF: Fibroblast growt 92.3 0.98 2.1E-05 37.4 8.5 64 113-181 3-67 (122)
55 COG2730 BglC Endoglucanase [Ca 92.2 0.042 9.2E-07 55.0 0.1 81 30-127 13-94 (407)
56 PF14488 DUF4434: Domain of un 92.1 0.39 8.5E-06 42.4 6.1 61 232-292 23-87 (166)
57 PRK14510 putative bifunctional 91.7 0.34 7.3E-06 55.2 6.4 64 232-296 190-275 (1221)
58 PLN03059 beta-galactosidase; P 91.5 0.35 7.6E-06 52.6 6.1 56 232-289 62-117 (840)
59 KOG3962 Predicted actin-bundli 91.5 0.31 6.6E-06 45.0 4.8 69 99-173 82-150 (246)
60 KOG3962 Predicted actin-bundli 91.2 0.72 1.6E-05 42.6 6.9 72 112-186 49-123 (246)
61 TIGR02102 pullulan_Gpos pullul 90.8 0.52 1.1E-05 53.0 6.7 22 269-290 554-575 (1111)
62 PF03198 Glyco_hydro_72: Gluca 90.4 0.57 1.2E-05 45.5 5.8 52 232-299 56-107 (314)
63 PF01373 Glyco_hydro_14: Glyco 90.1 0.61 1.3E-05 46.8 5.9 59 232-295 19-79 (402)
64 smart00791 Agglutinin Amaranth 89.9 2 4.2E-05 36.9 7.9 94 68-173 7-113 (139)
65 TIGR02401 trehalose_TreY malto 89.4 1 2.2E-05 49.2 7.3 58 233-292 20-87 (825)
66 PLN02877 alpha-amylase/limit d 89.1 0.93 2E-05 50.3 6.8 22 269-290 465-486 (970)
67 PRK14511 maltooligosyl trehalo 88.9 1.1 2.5E-05 49.1 7.3 56 233-290 24-89 (879)
68 PF02836 Glyco_hydro_2_C: Glyc 88.9 0.56 1.2E-05 44.6 4.5 43 232-292 39-81 (298)
69 PF14200 RicinB_lectin_2: Rici 88.7 2.7 5.9E-05 33.4 7.8 71 101-174 3-80 (105)
70 PLN02801 beta-amylase 88.3 1.6 3.4E-05 45.0 7.4 60 232-296 40-101 (517)
71 PRK14507 putative bifunctional 88.1 0.97 2.1E-05 52.9 6.4 56 233-290 762-827 (1693)
72 PLN02705 beta-amylase 87.7 1.5 3.2E-05 46.1 6.9 60 232-296 271-332 (681)
73 PLN02161 beta-amylase 87.4 1.9 4.2E-05 44.4 7.4 57 232-292 120-178 (531)
74 smart00791 Agglutinin Amaranth 86.8 2.1 4.6E-05 36.7 6.1 59 112-172 7-67 (139)
75 PLN02803 beta-amylase 86.6 2 4.3E-05 44.5 7.0 57 232-292 110-168 (548)
76 PLN00197 beta-amylase; Provisi 85.8 2.3 4.9E-05 44.3 7.0 60 232-296 130-191 (573)
77 PLN02905 beta-amylase 85.0 2.6 5.5E-05 44.6 6.9 57 232-292 289-347 (702)
78 PRK05904 coproporphyrinogen II 84.6 1.4 3E-05 43.4 4.7 69 221-296 93-166 (353)
79 TIGR00539 hemN_rel putative ox 84.3 1.7 3.6E-05 42.7 5.2 73 221-297 90-164 (360)
80 PRK08208 coproporphyrinogen II 84.1 1.4 3E-05 44.5 4.6 72 222-297 132-205 (430)
81 PF13204 DUF4038: Protein of u 84.0 2.6 5.6E-05 40.4 6.2 59 234-292 35-111 (289)
82 PF07468 Agglutinin: Agglutini 84.0 3.6 7.8E-05 36.0 6.4 74 98-172 40-124 (153)
83 PF14871 GHL6: Hypothetical gl 82.7 3.6 7.9E-05 34.9 5.9 56 233-290 4-64 (132)
84 COG3589 Uncharacterized conser 82.4 2.2 4.8E-05 41.9 5.0 54 231-292 15-71 (360)
85 KOG0471 Alpha-amylase [Carbohy 82.1 2.2 4.7E-05 44.6 5.2 58 233-292 44-110 (545)
86 PRK05628 coproporphyrinogen II 81.3 2.3 4.9E-05 42.0 4.8 66 228-297 104-172 (375)
87 PRK13347 coproporphyrinogen II 80.6 2.1 4.5E-05 43.5 4.4 71 222-297 143-216 (453)
88 KOG0626 Beta-glucosidase, lact 80.3 4.3 9.3E-05 42.1 6.5 74 232-307 94-170 (524)
89 cd00058 FGF Acidic and basic f 80.2 9.6 0.00021 31.9 7.6 60 117-181 5-65 (123)
90 smart00442 FGF Acidic and basi 79.4 11 0.00024 31.7 7.7 64 113-181 5-69 (126)
91 PRK05660 HemN family oxidoredu 79.3 2.9 6.2E-05 41.5 4.8 73 220-296 96-170 (378)
92 PF07468 Agglutinin: Agglutini 79.0 13 0.00029 32.5 8.2 60 113-175 8-74 (153)
93 KOG0496 Beta-galactosidase [Ca 77.7 4.8 0.0001 42.7 6.0 69 232-305 52-120 (649)
94 PRK08446 coproporphyrinogen II 77.2 4.7 0.0001 39.5 5.6 70 222-296 89-161 (350)
95 PRK05799 coproporphyrinogen II 76.3 4.6 0.0001 39.7 5.3 67 228-297 95-163 (374)
96 PRK07379 coproporphyrinogen II 75.7 4.1 8.9E-05 40.7 4.8 64 229-297 112-179 (400)
97 TIGR02455 TreS_stutzeri trehal 75.0 8.5 0.00018 41.2 6.9 60 232-292 77-152 (688)
98 PRK09057 coproporphyrinogen II 74.7 4.8 0.0001 39.9 4.9 72 221-298 94-168 (380)
99 PRK10150 beta-D-glucuronidase; 74.5 4.6 0.0001 42.4 5.0 41 232-290 316-356 (604)
100 PRK09058 coproporphyrinogen II 74.4 3.8 8.2E-05 41.7 4.2 73 221-297 153-227 (449)
101 TIGR01210 conserved hypothetic 74.4 4.6 9.9E-05 39.1 4.6 69 226-296 111-181 (313)
102 PRK08207 coproporphyrinogen II 73.8 3.9 8.5E-05 42.2 4.2 72 223-297 260-333 (488)
103 KOG0470 1,4-alpha-glucan branc 73.0 3.5 7.6E-05 44.2 3.6 63 230-292 256-336 (757)
104 PF05913 DUF871: Bacterial pro 72.8 4.3 9.4E-05 40.2 4.0 51 234-292 19-69 (357)
105 TIGR01211 ELP3 histone acetylt 72.6 5.2 0.00011 41.7 4.7 69 226-296 200-268 (522)
106 PRK09249 coproporphyrinogen II 72.2 5 0.00011 40.7 4.5 67 228-297 147-215 (453)
107 PRK06294 coproporphyrinogen II 72.2 6.3 0.00014 38.9 5.1 72 222-297 94-167 (370)
108 TIGR00538 hemN oxygen-independ 71.0 4.7 0.0001 40.9 3.9 67 228-297 147-215 (455)
109 PRK08599 coproporphyrinogen II 70.9 6.4 0.00014 38.8 4.8 67 228-297 96-164 (377)
110 COG3250 LacZ Beta-galactosidas 69.9 6.4 0.00014 43.1 4.9 43 232-292 324-366 (808)
111 TIGR02103 pullul_strch alpha-1 69.8 5.1 0.00011 44.4 4.1 28 268-296 402-432 (898)
112 PRK09525 lacZ beta-D-galactosi 69.6 7.5 0.00016 43.8 5.4 41 232-290 374-414 (1027)
113 PRK06582 coproporphyrinogen II 67.1 8.9 0.00019 38.3 4.9 75 220-297 100-174 (390)
114 PRK10340 ebgA cryptic beta-D-g 66.5 8.6 0.00019 43.3 5.1 41 232-290 358-398 (1021)
115 PF00167 FGF: Fibroblast growt 66.0 30 0.00064 28.5 7.1 72 98-175 29-104 (122)
116 PF04055 Radical_SAM: Radical 65.1 4.8 0.0001 33.1 2.2 65 228-296 86-153 (166)
117 TIGR01531 glyc_debranch glycog 64.6 13 0.00029 43.0 6.1 59 232-291 135-206 (1464)
118 PF02638 DUF187: Glycosyl hydr 64.3 16 0.00035 35.3 6.0 53 233-287 23-87 (311)
119 PRK08898 coproporphyrinogen II 60.5 12 0.00025 37.4 4.4 73 221-297 112-185 (394)
120 PLN03244 alpha-amylase; Provis 59.9 8.6 0.00019 42.1 3.4 24 267-290 438-461 (872)
121 cd03174 DRE_TIM_metallolyase D 59.6 11 0.00024 34.6 3.8 59 232-290 77-135 (265)
122 cd07944 DRE_TIM_HOA_like 4-hyd 59.2 24 0.00053 33.3 6.1 49 230-292 83-131 (266)
123 cd07948 DRE_TIM_HCS Saccharomy 58.9 12 0.00027 35.3 4.0 61 230-292 72-134 (262)
124 PRK08354 putative aminotransfe 58.1 16 0.00034 34.6 4.7 25 268-292 135-159 (311)
125 TIGR00433 bioB biotin syntheta 57.8 20 0.00043 33.8 5.2 57 228-288 119-176 (296)
126 cd00842 MPP_ASMase acid sphing 57.6 27 0.00058 32.9 6.1 80 219-299 137-228 (296)
127 PRK05664 threonine-phosphate d 57.6 22 0.00048 34.0 5.6 55 238-292 103-166 (330)
128 TIGR03471 HpnJ hopanoid biosyn 57.0 13 0.00028 37.8 4.1 65 229-297 284-350 (472)
129 PF01261 AP_endonuc_2: Xylose 56.0 14 0.0003 32.0 3.6 61 232-292 74-134 (213)
130 cd07937 DRE_TIM_PC_TC_5S Pyruv 55.2 28 0.00061 32.9 5.8 49 230-292 92-140 (275)
131 TIGR00542 hxl6Piso_put hexulos 55.1 20 0.00044 33.4 4.8 58 233-292 98-155 (279)
132 PRK05301 pyrroloquinoline quin 53.5 28 0.00061 34.2 5.7 24 228-251 100-123 (378)
133 smart00729 Elp3 Elongator prot 52.9 27 0.00059 29.8 5.0 61 228-290 96-157 (216)
134 PRK06425 histidinol-phosphate 52.5 30 0.00065 33.1 5.6 24 268-291 140-163 (332)
135 COG0436 Aspartate/tyrosine/aro 50.8 26 0.00057 34.9 5.0 62 222-290 119-203 (393)
136 PF04343 DUF488: Protein of un 48.9 26 0.00057 28.8 4.0 28 272-300 2-29 (122)
137 TIGR01305 GMP_reduct_1 guanosi 48.7 49 0.0011 32.7 6.4 59 229-289 158-218 (343)
138 cd07939 DRE_TIM_NifV Streptomy 48.6 19 0.00042 33.6 3.5 58 231-290 71-130 (259)
139 PRK13210 putative L-xylulose 5 48.3 29 0.00063 32.1 4.7 58 233-292 98-155 (284)
140 TIGR02109 PQQ_syn_pqqE coenzym 47.9 39 0.00085 32.8 5.7 59 228-289 91-151 (358)
141 cd07938 DRE_TIM_HMGL 3-hydroxy 46.1 27 0.00058 33.1 4.1 60 231-292 75-136 (274)
142 COG0635 HemN Coproporphyrinoge 45.7 28 0.00061 35.1 4.4 68 228-297 133-201 (416)
143 PRK08195 4-hyroxy-2-oxovalerat 45.4 58 0.0013 31.9 6.4 48 231-292 90-137 (337)
144 PRK13209 L-xylulose 5-phosphat 44.3 31 0.00066 32.1 4.2 58 233-292 103-160 (283)
145 PRK05692 hydroxymethylglutaryl 43.8 29 0.00063 33.2 4.0 60 231-292 81-142 (287)
146 TIGR02090 LEU1_arch isopropylm 43.6 26 0.00057 34.6 3.7 60 231-292 73-134 (363)
147 TIGR03217 4OH_2_O_val_ald 4-hy 43.2 63 0.0014 31.6 6.3 48 231-292 89-136 (333)
148 PF14701 hDGE_amylase: glucano 43.2 65 0.0014 32.8 6.5 61 232-292 25-99 (423)
149 PF04273 DUF442: Putative phos 42.9 19 0.00041 29.6 2.2 18 229-246 14-31 (110)
150 PRK09440 avtA valine--pyruvate 42.6 30 0.00065 34.1 4.0 25 268-292 197-221 (416)
151 PLN02450 1-aminocyclopropane-1 42.2 29 0.00062 35.3 3.9 25 268-292 209-233 (468)
152 PRK09997 hydroxypyruvate isome 42.1 46 0.00099 30.7 4.9 58 233-292 89-146 (258)
153 PF01212 Beta_elim_lyase: Beta 42.0 21 0.00046 34.2 2.7 59 228-291 104-166 (290)
154 PF01229 Glyco_hydro_39: Glyco 41.7 29 0.00063 35.6 3.8 77 206-295 23-108 (486)
155 cd00058 FGF Acidic and basic f 41.1 2.1E+02 0.0045 23.8 8.8 70 99-174 28-101 (123)
156 TIGR02026 BchE magnesium-proto 41.1 35 0.00076 35.1 4.3 63 231-297 286-350 (497)
157 PLN02368 alanine transaminase 40.2 33 0.00072 34.3 3.9 23 268-290 228-250 (407)
158 COG0399 WecE Predicted pyridox 38.8 26 0.00056 35.0 2.9 40 272-312 138-177 (374)
159 PRK11858 aksA trans-homoaconit 38.6 37 0.00081 33.7 4.0 58 231-290 77-136 (378)
160 TIGR03234 OH-pyruv-isom hydrox 38.3 50 0.0011 30.1 4.6 58 233-292 88-145 (254)
161 TIGR03235 DNA_S_dndA cysteine 38.3 53 0.0012 31.4 4.9 26 267-292 152-177 (353)
162 PF14200 RicinB_lectin_2: Rici 37.9 86 0.0019 24.6 5.3 60 68-127 16-79 (105)
163 cd07945 DRE_TIM_CMS Leptospira 37.5 35 0.00076 32.5 3.4 59 232-292 77-137 (280)
164 PRK05839 hypothetical protein; 37.4 37 0.0008 33.1 3.7 25 268-292 173-197 (374)
165 cd06565 GH20_GcnA-like Glycosy 36.9 96 0.0021 29.8 6.4 56 234-292 22-82 (301)
166 PRK07681 aspartate aminotransf 36.9 38 0.00083 33.2 3.7 25 268-292 184-208 (399)
167 PLN02376 1-aminocyclopropane-1 36.8 40 0.00087 34.7 4.0 24 268-291 217-240 (496)
168 TIGR03849 arch_ComA phosphosul 36.8 85 0.0018 29.5 5.8 49 232-292 74-122 (237)
169 COG3934 Endo-beta-mannanase [C 36.4 27 0.00059 36.2 2.5 66 222-292 19-89 (587)
170 PRK07590 L,L-diaminopimelate a 36.3 38 0.00083 33.4 3.6 23 268-290 194-216 (409)
171 TIGR02660 nifV_homocitr homoci 36.2 36 0.00079 33.6 3.4 58 231-290 74-133 (365)
172 PLN02746 hydroxymethylglutaryl 36.0 44 0.00095 33.1 3.9 60 231-292 123-184 (347)
173 PRK09147 succinyldiaminopimela 35.8 40 0.00087 33.0 3.7 24 268-291 184-207 (396)
174 PRK08068 transaminase; Reviewe 35.8 40 0.00087 32.9 3.7 25 268-292 185-209 (389)
175 PRK07094 biotin synthase; Prov 35.8 45 0.00098 31.9 3.9 57 230-290 127-185 (323)
176 TIGR02666 moaA molybdenum cofa 34.8 84 0.0018 30.2 5.7 58 232-292 102-162 (334)
177 PRK09148 aminotransferase; Val 34.4 43 0.00092 33.1 3.6 25 268-292 183-207 (405)
178 PF02679 ComA: (2R)-phospho-3- 34.0 71 0.0015 30.1 4.8 49 232-292 87-135 (244)
179 PLN00143 tyrosine/nicotianamin 33.9 50 0.0011 32.7 4.0 25 268-292 188-212 (409)
180 TIGR01212 radical SAM protein, 33.9 53 0.0011 31.5 4.0 69 226-296 117-189 (302)
181 PLN02607 1-aminocyclopropane-1 33.8 50 0.0011 33.4 4.1 25 268-292 218-242 (447)
182 PRK08636 aspartate aminotransf 33.8 46 0.00099 32.8 3.7 25 268-292 193-217 (403)
183 PRK09257 aromatic amino acid a 33.7 51 0.0011 32.3 4.0 25 268-292 190-214 (396)
184 PF01041 DegT_DnrJ_EryC1: DegT 33.6 39 0.00084 32.9 3.2 38 270-308 127-164 (363)
185 PRK09389 (R)-citramalate synth 33.4 48 0.0011 34.2 3.9 61 232-292 76-136 (488)
186 TIGR03538 DapC_gpp succinyldia 33.1 43 0.00092 32.8 3.4 25 268-292 183-207 (393)
187 PRK07366 succinyldiaminopimela 33.1 48 0.001 32.3 3.7 23 268-290 183-205 (388)
188 PF10566 Glyco_hydro_97: Glyco 33.0 99 0.0021 29.6 5.7 49 232-292 109-157 (273)
189 PRK13397 3-deoxy-7-phosphohept 32.9 1.5E+02 0.0032 28.1 6.8 49 238-292 38-88 (250)
190 PRK06207 aspartate aminotransf 32.8 52 0.0011 32.5 3.9 25 268-292 196-220 (405)
191 PRK12399 tagatose 1,6-diphosph 32.7 80 0.0017 31.0 5.0 54 234-292 110-164 (324)
192 PF07555 NAGidase: beta-N-acet 32.7 72 0.0016 31.0 4.7 54 233-292 19-78 (306)
193 PRK06959 putative threonine-ph 32.5 1.1E+02 0.0025 29.3 6.2 54 237-292 109-172 (339)
194 PRK09856 fructoselysine 3-epim 32.4 67 0.0015 29.6 4.4 58 233-292 94-151 (275)
195 PF00728 Glyco_hydro_20: Glyco 31.8 76 0.0016 30.5 4.8 67 228-298 13-99 (351)
196 PF01791 DeoC: DeoC/LacD famil 31.8 37 0.0008 31.1 2.5 53 232-289 79-131 (236)
197 PTZ00377 alanine aminotransfer 31.7 54 0.0012 33.3 3.9 23 268-290 236-258 (481)
198 COG0535 Predicted Fe-S oxidore 31.4 1.4E+02 0.0031 28.1 6.5 60 228-290 104-165 (347)
199 TIGR03542 DAPAT_plant LL-diami 31.4 54 0.0012 32.2 3.8 25 268-292 191-215 (402)
200 PRK06256 biotin synthase; Vali 31.1 55 0.0012 31.5 3.7 58 229-290 149-207 (336)
201 cd07943 DRE_TIM_HOA 4-hydroxy- 31.1 1.4E+02 0.0031 27.8 6.4 46 231-290 87-132 (263)
202 PRK06290 aspartate aminotransf 31.0 54 0.0012 32.6 3.7 25 268-292 197-221 (410)
203 PF10566 Glyco_hydro_97: Glyco 30.8 1.3E+02 0.0029 28.7 6.2 59 234-292 37-95 (273)
204 COG2100 Predicted Fe-S oxidore 30.6 1.5E+02 0.0033 29.4 6.5 64 228-298 200-269 (414)
205 PTZ00376 aspartate aminotransf 30.5 60 0.0013 32.0 3.9 25 268-292 194-218 (404)
206 COG3280 TreY Maltooligosyl tre 30.4 67 0.0015 35.1 4.4 68 234-303 24-104 (889)
207 COG1649 Uncharacterized protei 30.3 88 0.0019 31.9 5.0 55 233-287 68-132 (418)
208 PF13378 MR_MLE_C: Enolase C-t 30.2 1.6E+02 0.0036 23.2 5.8 48 228-288 3-51 (111)
209 cd07941 DRE_TIM_LeuA3 Desulfob 30.0 63 0.0014 30.5 3.8 56 232-289 81-138 (273)
210 cd00958 DhnA Class I fructose- 30.0 57 0.0012 29.6 3.5 51 234-292 81-131 (235)
211 PRK05093 argD bifunctional N-s 30.0 45 0.00098 32.8 3.0 23 268-290 203-225 (403)
212 PLN02231 alanine transaminase 29.6 61 0.0013 33.7 4.0 23 268-290 289-311 (534)
213 PRK06855 aminotransferase; Val 29.3 64 0.0014 32.3 3.9 23 268-290 189-211 (433)
214 PF00155 Aminotran_1_2: Aminot 29.1 54 0.0012 31.2 3.2 25 268-292 166-190 (363)
215 KOG0256 1-aminocyclopropane-1- 29.1 63 0.0014 32.9 3.7 31 260-290 235-266 (471)
216 PRK13361 molybdenum cofactor b 29.0 1.4E+02 0.003 28.8 6.1 19 233-251 105-123 (329)
217 PF15632 ATPgrasp_Ter: ATP-gra 29.0 55 0.0012 32.1 3.3 26 267-292 50-75 (329)
218 PLN02389 biotin synthase 28.8 97 0.0021 31.0 5.1 56 228-287 174-230 (379)
219 PRK00125 pyrF orotidine 5'-pho 28.6 58 0.0012 31.2 3.3 25 268-292 71-95 (278)
220 smart00633 Glyco_10 Glycosyl h 28.5 62 0.0013 30.0 3.5 23 268-292 14-36 (254)
221 TIGR01302 IMP_dehydrog inosine 28.2 1.8E+02 0.0038 29.7 6.9 62 228-289 272-333 (450)
222 PRK00278 trpC indole-3-glycero 28.2 63 0.0014 30.4 3.5 23 270-292 147-169 (260)
223 PRK04161 tagatose 1,6-diphosph 28.1 72 0.0016 31.4 3.9 58 230-292 108-166 (329)
224 PRK08175 aminotransferase; Val 28.1 53 0.0011 32.2 3.0 24 268-291 182-205 (395)
225 cd01335 Radical_SAM Radical SA 28.0 96 0.0021 25.8 4.3 62 230-292 86-147 (204)
226 PRK14012 cysteine desulfurase; 27.9 1.1E+02 0.0024 30.0 5.3 30 267-297 158-187 (404)
227 TIGR03539 DapC_actino succinyl 27.9 51 0.0011 31.8 2.8 25 268-292 160-184 (357)
228 PLN02397 aspartate transaminas 27.8 72 0.0016 31.8 4.0 25 268-292 212-236 (423)
229 PRK08247 cystathionine gamma-s 27.7 71 0.0015 31.2 3.9 31 260-292 145-175 (366)
230 PRK13355 bifunctional HTH-doma 27.7 67 0.0015 33.0 3.9 24 268-291 299-322 (517)
231 cd01299 Met_dep_hydrolase_A Me 27.7 2E+02 0.0044 27.2 7.0 57 233-292 124-180 (342)
232 TIGR03128 RuMP_HxlA 3-hexulose 27.5 65 0.0014 28.5 3.3 44 234-292 68-111 (206)
233 TIGR01232 lacD tagatose 1,6-di 27.4 68 0.0015 31.5 3.5 55 233-292 110-165 (325)
234 cd00617 Tnase_like Tryptophana 27.3 58 0.0013 33.1 3.2 25 268-292 171-195 (431)
235 cd00609 AAT_like Aspartate ami 27.3 56 0.0012 30.4 2.9 25 268-292 150-174 (350)
236 cd00019 AP2Ec AP endonuclease 27.2 76 0.0016 29.5 3.8 56 234-292 90-145 (279)
237 PRK05942 aspartate aminotransf 27.1 52 0.0011 32.2 2.8 24 268-291 188-211 (394)
238 KOG4485 Uncharacterized conser 27.0 67 0.0015 33.2 3.5 39 227-265 259-297 (724)
239 PRK13237 tyrosine phenol-lyase 26.8 59 0.0013 33.5 3.1 28 268-296 196-223 (460)
240 cd02742 GH20_hexosaminidase Be 26.7 1.7E+02 0.0038 27.9 6.3 68 228-298 11-98 (303)
241 COG1692 Calcineurin-like phosp 26.7 1.4E+02 0.003 28.5 5.3 28 265-292 125-152 (266)
242 cd07940 DRE_TIM_IPMS 2-isoprop 26.6 65 0.0014 30.1 3.3 57 231-289 71-133 (268)
243 PF13899 Thioredoxin_7: Thiore 26.4 54 0.0012 24.6 2.2 22 271-292 5-26 (82)
244 KOG3770 Acid sphingomyelinase 26.4 1.7E+02 0.0036 31.1 6.3 75 220-297 284-371 (577)
245 PRK05939 hypothetical protein; 26.3 1.1E+02 0.0023 30.6 4.9 33 267-300 145-178 (397)
246 PRK12331 oxaloacetate decarbox 26.2 1.4E+02 0.003 30.6 5.7 48 230-291 97-144 (448)
247 TIGR02006 IscS cysteine desulf 26.1 1.1E+02 0.0024 30.0 4.9 29 267-296 156-184 (402)
248 PRK07865 N-succinyldiaminopime 26.1 63 0.0014 31.1 3.1 25 268-292 166-190 (364)
249 TIGR03402 FeS_nifS cysteine de 25.9 1.1E+02 0.0023 29.7 4.7 30 267-297 150-179 (379)
250 PRK01278 argD acetylornithine 25.8 61 0.0013 31.6 3.0 23 268-290 194-216 (389)
251 PRK05957 aspartate aminotransf 25.8 59 0.0013 31.8 2.9 25 268-292 178-202 (389)
252 cd06570 GH20_chitobiase-like_1 25.7 2.3E+02 0.0051 27.4 7.0 67 228-298 13-94 (311)
253 PF13200 DUF4015: Putative gly 25.6 1.1E+02 0.0024 29.9 4.7 58 233-290 17-81 (316)
254 PRK00164 moaA molybdenum cofac 25.6 1.5E+02 0.0033 28.4 5.7 18 234-251 110-127 (331)
255 cd07947 DRE_TIM_Re_CS Clostrid 25.5 82 0.0018 30.1 3.7 60 230-291 75-136 (279)
256 PRK07807 inosine 5-monophospha 25.3 2E+02 0.0042 29.8 6.7 63 230-292 277-339 (479)
257 TIGR01140 L_thr_O3P_dcar L-thr 25.2 64 0.0014 30.8 3.0 25 268-292 143-167 (330)
258 cd06522 GH25_AtlA-like AtlA is 24.7 2.2E+02 0.0047 25.2 6.1 25 268-292 72-100 (192)
259 PRK08960 hypothetical protein; 24.7 69 0.0015 31.2 3.2 23 268-290 183-205 (387)
260 PF08915 tRNA-Thr_ED: Archaea- 24.7 49 0.0011 28.5 1.8 20 236-255 102-121 (138)
261 PRK09265 aminotransferase AlaT 24.7 65 0.0014 31.6 3.0 23 268-290 186-208 (404)
262 KOG3885 Fibroblast growth fact 24.3 2.8E+02 0.0061 24.4 6.5 61 114-179 29-91 (155)
263 TIGR03540 DapC_direct LL-diami 24.3 65 0.0014 31.3 2.9 25 268-292 182-206 (383)
264 PF00682 HMGL-like: HMGL-like 23.9 68 0.0015 29.1 2.8 59 230-290 64-128 (237)
265 PRK06358 threonine-phosphate d 23.9 70 0.0015 30.9 3.0 23 268-290 159-181 (354)
266 PLN00175 aminotransferase fami 23.8 72 0.0016 31.7 3.1 25 268-292 205-229 (413)
267 PRK09856 fructoselysine 3-epim 23.6 1.9E+02 0.0041 26.6 5.8 55 230-292 14-68 (275)
268 PF03851 UvdE: UV-endonuclease 23.4 45 0.00097 32.0 1.5 21 272-292 192-212 (275)
269 PRK07550 hypothetical protein; 23.3 73 0.0016 31.0 3.0 25 268-292 181-205 (386)
270 PRK12858 tagatose 1,6-diphosph 23.2 1.3E+02 0.0027 29.8 4.6 52 234-290 111-163 (340)
271 cd00610 OAT_like Acetyl ornith 23.1 73 0.0016 31.0 3.0 24 268-291 210-233 (413)
272 TIGR02618 tyr_phenol_ly tyrosi 23.1 76 0.0016 32.6 3.1 25 268-292 189-213 (450)
273 smart00518 AP2Ec AP endonuclea 23.0 2.4E+02 0.0052 25.9 6.3 58 229-292 41-105 (273)
274 PRK07324 transaminase; Validat 23.0 74 0.0016 31.0 3.0 23 268-290 171-193 (373)
275 PRK09028 cystathionine beta-ly 23.0 1.3E+02 0.0028 30.1 4.8 42 260-303 155-196 (394)
276 PLN02721 threonine aldolase 23.0 76 0.0017 30.0 3.0 23 268-290 156-178 (353)
277 TIGR01303 IMP_DH_rel_1 IMP deh 22.9 2.8E+02 0.0061 28.6 7.3 62 229-290 274-335 (475)
278 cd06454 KBL_like KBL_like; thi 22.9 56 0.0012 30.8 2.1 26 267-292 146-171 (349)
279 PRK06348 aspartate aminotransf 22.9 76 0.0016 30.9 3.1 25 268-292 180-204 (384)
280 PRK06108 aspartate aminotransf 22.9 77 0.0017 30.5 3.1 24 268-291 176-199 (382)
281 COG3623 SgaU Putative L-xylulo 22.6 72 0.0016 30.2 2.6 21 267-287 93-113 (287)
282 PRK03244 argD acetylornithine 22.6 76 0.0016 31.0 3.0 23 268-290 202-224 (398)
283 PLN00145 tyrosine/nicotianamin 22.6 76 0.0016 31.8 3.0 25 268-292 208-232 (430)
284 COG0641 AslB Arylsulfatase reg 22.5 2.5E+02 0.0055 28.1 6.7 55 228-285 100-157 (378)
285 COG0520 csdA Selenocysteine ly 22.4 1.4E+02 0.003 30.0 4.9 59 234-292 127-201 (405)
286 PRK07309 aromatic amino acid a 22.2 82 0.0018 30.8 3.1 25 268-292 184-208 (391)
287 PRK13745 anaerobic sulfatase-m 22.2 1.9E+02 0.0041 28.9 5.8 56 228-286 111-169 (412)
288 PRK08056 threonine-phosphate d 22.2 76 0.0016 30.6 2.9 24 268-291 160-183 (356)
289 PRK08508 biotin synthase; Prov 22.1 1.6E+02 0.0035 27.8 5.0 54 228-286 98-153 (279)
290 PRK02936 argD acetylornithine 22.1 79 0.0017 30.6 3.0 23 268-290 186-208 (377)
291 PRK09082 methionine aminotrans 22.1 71 0.0015 31.2 2.7 25 268-292 181-205 (386)
292 PRK02627 acetylornithine amino 22.0 80 0.0017 30.6 3.0 23 268-290 201-223 (396)
293 TIGR01244 conserved hypothetic 22.0 75 0.0016 26.6 2.5 20 227-246 12-31 (135)
294 PLN02651 cysteine desulfurase 22.0 1.3E+02 0.0029 28.9 4.5 29 267-296 152-180 (364)
295 smart00442 FGF Acidic and basi 21.9 4.7E+02 0.01 21.8 8.9 71 99-175 32-106 (126)
296 PRK08912 hypothetical protein; 21.9 71 0.0015 31.1 2.6 25 268-292 177-201 (387)
297 PRK10076 pyruvate formate lyas 21.7 3.1E+02 0.0067 25.0 6.6 21 268-288 191-211 (213)
298 TIGR03403 nifS_epsilon cystein 21.7 1.4E+02 0.0031 28.8 4.7 30 267-297 154-183 (382)
299 cd00245 Glm_e Coenzyme B12-dep 21.7 95 0.0021 31.7 3.5 54 237-292 116-172 (428)
300 TIGR03573 WbuX N-acetyl sugar 21.6 1.1E+02 0.0023 30.0 3.8 59 234-292 104-169 (343)
301 COG2108 Uncharacterized conser 21.6 2.7E+02 0.0059 27.6 6.4 59 228-298 120-178 (353)
302 PRK07777 aminotransferase; Val 21.6 81 0.0018 30.7 3.0 25 268-292 177-201 (387)
303 COG2896 MoaA Molybdenum cofact 21.6 1.4E+02 0.003 29.3 4.5 61 229-296 98-163 (322)
304 PRK12381 bifunctional succinyl 21.6 76 0.0017 31.4 2.8 22 268-289 202-223 (406)
305 COG1167 ARO8 Transcriptional r 21.5 2.4E+02 0.0052 28.7 6.5 58 234-291 192-268 (459)
306 PF15647 Tox-REase-3: Restrict 21.5 69 0.0015 26.2 2.0 21 271-291 88-108 (109)
307 TIGR03801 asp_4_decarbox aspar 21.4 1.5E+02 0.0033 30.9 5.0 23 268-290 258-282 (521)
308 PRK13758 anaerobic sulfatase-m 21.4 2.2E+02 0.0049 27.6 6.0 57 228-287 102-161 (370)
309 PRK06939 2-amino-3-ketobutyrat 21.3 59 0.0013 31.3 1.9 26 267-292 188-213 (397)
310 PLN02187 rooty/superroot1 21.3 82 0.0018 32.0 3.0 24 268-291 222-245 (462)
311 PRK15481 transcriptional regul 21.2 1.1E+02 0.0023 30.4 3.8 24 268-291 230-254 (431)
312 PRK13238 tnaA tryptophanase/L- 21.2 88 0.0019 31.9 3.2 23 268-290 196-218 (460)
313 TIGR03537 DapC succinyldiamino 21.0 84 0.0018 30.1 2.9 25 268-292 154-178 (350)
314 TIGR02127 pyrF_sub2 orotidine 21.0 1E+02 0.0022 29.2 3.4 25 268-292 71-95 (261)
315 PRK06225 aspartate aminotransf 20.9 85 0.0018 30.4 3.0 23 268-290 175-197 (380)
316 PRK09276 LL-diaminopimelate am 20.9 86 0.0019 30.4 3.0 25 268-292 184-208 (385)
317 TIGR01264 tyr_amTase_E tyrosin 20.7 88 0.0019 30.6 3.0 25 268-292 186-210 (401)
318 PLN00144 acetylornithine trans 20.6 88 0.0019 30.8 3.0 21 269-289 187-207 (382)
319 cd00019 AP2Ec AP endonuclease 20.6 3E+02 0.0064 25.4 6.4 25 267-292 82-106 (279)
320 PTZ00433 tyrosine aminotransfe 20.5 88 0.0019 30.9 3.0 25 268-292 195-219 (412)
321 PRK07337 aminotransferase; Val 20.4 95 0.0021 30.2 3.2 23 268-290 181-203 (388)
322 TIGR02017 hutG_amidohyd N-form 20.4 1.1E+02 0.0024 28.9 3.5 27 270-297 125-152 (263)
323 cd06502 TA_like Low-specificit 20.1 92 0.002 29.2 2.9 23 268-290 144-166 (338)
324 cd06562 GH20_HexA_HexB-like Be 20.1 2.5E+02 0.0054 27.5 6.0 29 268-298 68-96 (348)
325 PRK00854 rocD ornithine--oxo-a 20.1 92 0.002 30.4 3.0 23 269-291 207-229 (401)
No 1
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=9.3e-18 Score=166.91 Aligned_cols=106 Identities=29% Similarity=0.499 Sum_probs=94.0
Q ss_pred cccchhhhhccCCCCCchHHHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC-CCCCcc--ccHHHHHHHHHH
Q 020265 202 RMQGEFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVG--GSLRALDNAFTW 278 (328)
Q Consensus 202 ~~~dE~~l~~~~G~~~a~~~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~-~~p~~~--~~~~~ld~~i~w 278 (328)
.+.++..++..+|...+...++.||.+++|++||.+|+++|||+||||++||.+ ...+ .+|++. .++.+||++|+|
T Consensus 46 ~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~~ld~~I~~ 124 (407)
T COG2730 46 QLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLKILDEAINW 124 (407)
T ss_pred eeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHHHHHHHHHH
Confidence 457788888888988899999999999999999999999999999999999987 3333 478876 367799999999
Q ss_pred HHhCCCceEEeeCCCCCCCCCCCCCCCCCCC
Q 020265 279 AGYAFFPVPSDITISVTTSQDLTIMGGPVHN 309 (328)
Q Consensus 279 a~~~gl~VilDlH~~~pG~qn~~~~sG~~~~ 309 (328)
|+++||+|+||+|+ +||++++.++||..+.
T Consensus 125 a~~~gi~V~iD~H~-~~~~~~~~~~s~~~~~ 154 (407)
T COG2730 125 AKKLGIYVLIDLHG-YPGGNNGHEHSGYTSD 154 (407)
T ss_pred HHhcCeeEEEEecc-cCCCCCCcCccccccc
Confidence 99999999999999 9999999999996543
No 2
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=99.71 E-value=6.6e-17 Score=133.77 Aligned_cols=113 Identities=28% Similarity=0.398 Sum_probs=100.6
Q ss_pred cceeeeeeecccccccccCCChhhhhcccccccccceEEEeeccccEEEeecCccEEEeecCCCCceeeecCCCCCCCCc
Q 020265 67 TQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSET 146 (328)
Q Consensus 67 ~~v~l~~~~~~kyv~ae~gg~~~l~Anr~~~~hWEtF~l~~ite~d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~ 146 (328)
.+++|++. +++||+++++| ..+.|++...+.||+|+|+..+++.++||+.||+||+++. .+.+.|++. |+.+|.
T Consensus 2 p~v~Lrs~-~gkyl~~~~~g-~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~---~g~l~~~~~-~~~~e~ 75 (119)
T cd00257 2 PQVVLRSV-NGRYLSAEAGG-DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADS---DGGVQLEGH-PNADCR 75 (119)
T ss_pred cEEEEEEc-CCCEEEEeccC-CEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEEC---CCCEEecCC-CCCCcE
Confidence 46889987 99999999876 3688999998899999999988888999999999999987 446888888 999999
Q ss_pred eEEEEccCCCceeEEEcCCceEEeeccceeEeeccCCCCCC
Q 020265 147 FEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSW 187 (328)
Q Consensus 147 F~~~~~~~~~~~v~lra~nG~~v~a~~~~~l~A~~~~~~~W 187 (328)
|.++.++| ++++||+.||+||+++..+.|.++....+.|
T Consensus 76 F~~e~~~~--g~~al~~~~G~yl~~~~~g~l~~~~~~~~~~ 114 (119)
T cd00257 76 FTLEFHGD--GKWALRAENGRYLGGDGSGTLKASSETVGPD 114 (119)
T ss_pred EEEEECCC--CeEEEEcCCCCEEeecCCCeEEEecCCCCcc
Confidence 99999876 4799999999999999888999999876666
No 3
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=99.56 E-value=8.4e-15 Score=120.50 Aligned_cols=103 Identities=32% Similarity=0.464 Sum_probs=88.4
Q ss_pred cccccccCCChhhhhcccccccccceEEEeecccc-EEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCC
Q 020265 78 KYLCAENGGGTIVVANRTSASGWETFKLWRINETN-FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDL 156 (328)
Q Consensus 78 kyv~ae~gg~~~l~Anr~~~~hWEtF~l~~ite~d-~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~ 156 (328)
+|++++..+ ..+.||+.++++||+|+|+...++. ++||+++|+||+++. .+.+.|++.+++.++.|++++++
T Consensus 3 ~~~~~~k~~-~~l~an~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~---~G~v~~~~~~~~~~~~F~i~~~~--- 75 (111)
T PF06268_consen 3 GYLVSEKFG-AHLNANRASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDS---DGSVVADSETPGPDEFFEIEWHG--- 75 (111)
T ss_dssp EEEEETTCT-CBEEEEESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEET---TSEEEEEESSSSGGGCBEEEEET---
T ss_pred cEEEEEEcC-CEEECChhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcC---CCeEEecCCCCCCCcEEEEEECC---
Confidence 344444433 4688999888999999999776644 699999999999987 66899999999999999999994
Q ss_pred ceeEEEcCCceEEeeccceeEeeccCCCCCC
Q 020265 157 SRVRIKAPNGFFLQAKTEELVTADYEGATSW 187 (328)
Q Consensus 157 ~~v~lra~nG~~v~a~~~~~l~A~~~~~~~W 187 (328)
+.+.++++||+||++++++.|.|+....+.|
T Consensus 76 ~~~~~~~~nGkYl~~~~~g~l~a~~~~~~~~ 106 (111)
T PF06268_consen 76 GKVALRASNGKYLSAGPNGQLKANATSPGKD 106 (111)
T ss_dssp TEEEEECTTSCEEEEETTTEEEEEESSSSGG
T ss_pred CEEEEECCCCCEEeeCCCCeEEEcCCCCCcc
Confidence 6899999999999999999999999887776
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.33 E-value=1.1e-12 Score=121.59 Aligned_cols=77 Identities=31% Similarity=0.427 Sum_probs=59.3
Q ss_pred HhhcccC-CCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCCC
Q 020265 222 MRKHWST-YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 299 (328)
Q Consensus 222 l~~h~~t-~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~qn 299 (328)
++.||.+ +++++||+.|+++|+|+|||||.|..+..+.+.-.+....+++||++|++|+++||+||||+|. .|+..+
T Consensus 13 ~n~~w~~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~-~~~w~~ 90 (281)
T PF00150_consen 13 FNTHWYNPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN-APGWAN 90 (281)
T ss_dssp EEETTSGGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE-STTCSS
T ss_pred eecccCCCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc-Cccccc
Confidence 4455654 3999999999999999999999986554322221233458999999999999999999999999 876643
No 5
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=98.88 E-value=9e-09 Score=84.99 Aligned_cols=71 Identities=15% Similarity=0.317 Sum_probs=61.9
Q ss_pred cEEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEcCCceEEeeccceeEeeccCCCCCC
Q 020265 112 NFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATSW 187 (328)
Q Consensus 112 d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra~nG~~v~a~~~~~l~A~~~~~~~W 187 (328)
.+.||+.||+||+++. +| ..+.|++.+|+.||+|+++..++ ++|+||+.||+||++...+.|.++.. .+.|
T Consensus 3 ~v~Lrs~~gkyl~~~~-~g-~~v~a~~~~~~~~e~F~l~~~~~--g~v~Lrs~~G~yls~~~~g~l~~~~~-~~~~ 73 (119)
T cd00257 3 QVVLRSVNGRYLSAEA-GG-DKVDANRDSLKGDETFTLEFDNT--GKYALRSHDGKYLSADSDGGVQLEGH-PNAD 73 (119)
T ss_pred EEEEEEcCCCEEEEec-cC-CEEEEcCccCCCceEEEEEECCC--CeEEEEECCCcEEEEECCCCEEecCC-CCCC
Confidence 3689999999999998 53 48999999999999999999874 57999999999999988788998887 5655
No 6
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=98.40 E-value=1.3e-06 Score=78.88 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=54.2
Q ss_pred cccceEEEee-ccccEEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeecccee
Q 020265 99 GWETFKLWRI-NETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEEL 176 (328)
Q Consensus 99 hWEtF~l~~i-te~d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~~~~ 176 (328)
..|.|....+ ++..|+||+.+|+|++++. .|.++|++.++|++|+|.++...+ +.++.+ .|++||+++..+-
T Consensus 26 p~qV~va~~v~~~~~iafKs~~GkYLs~Dk---~G~v~a~sdAiGp~E~f~~V~~~~---~~a~~~~~~~~FLs~~~~~~ 99 (191)
T PF06229_consen 26 PRQVWVATRVPGDEKIAFKSGHGKYLSCDK---DGIVSARSDAIGPQEQFEPVFQDG---KPALFSSSNNKFLSVDEEGD 99 (191)
T ss_dssp TTT-EEEEE--SSS-EEEEETTS-BEEE-S---SSBEEE--SS--TTTBEEEE-STT-----EEEE-TTS-BEEE-SSS-
T ss_pred hhHeEEEEEecCCCceEeeccCccEEEEcC---CCcEEEEeecCCCceEEEEEECCC---CeEEEecCCCeEEEEecccC
Confidence 4689999999 7888999999999999997 668999999999999999999863 578888 9999999998666
Q ss_pred EeeccCCCCC
Q 020265 177 VTADYEGATS 186 (328)
Q Consensus 177 l~A~~~~~~~ 186 (328)
+.|+-...+.
T Consensus 100 i~a~s~~a~~ 109 (191)
T PF06229_consen 100 IRADSKTAGE 109 (191)
T ss_dssp EEE--S---T
T ss_pred eeeccccCCC
Confidence 7777665443
No 7
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=98.40 E-value=4e-07 Score=74.80 Aligned_cols=77 Identities=23% Similarity=0.367 Sum_probs=64.1
Q ss_pred CcceeeeeeecccccccccCCChhhhhcccccccccceEEEeeccccEEEeecCccEEEeecCCCCceeeecCCCCCCCC
Q 020265 66 GTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSE 145 (328)
Q Consensus 66 g~~v~l~~~~~~kyv~ae~gg~~~l~Anr~~~~hWEtF~l~~ite~d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE 145 (328)
+..+.|++ .+|||++++.-| .+++++...+.++.|+|+.- .+.+.+++.||+|+++.. ++.+.|++++|+.||
T Consensus 35 ~~~v~lrs-~~GkYls~~~~G--~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~---~g~l~a~~~~~~~~e 107 (111)
T PF06268_consen 35 SYKVALRS-HNGKYLSVDSDG--SVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP---NGQLKANATSPGKDE 107 (111)
T ss_dssp EEEEEEEC-TTSEEEEEETTS--EEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET---TTEEEEEESSSSGGG
T ss_pred CCEEEEEc-CCCCEEEEcCCC--eEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC---CCeEEEcCCCCCcce
Confidence 34567884 699999976544 37788887789999999987 556788889999999876 778999999999999
Q ss_pred ceEE
Q 020265 146 TFEI 149 (328)
Q Consensus 146 ~F~~ 149 (328)
.|++
T Consensus 108 lf~~ 111 (111)
T PF06268_consen 108 LFEY 111 (111)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9975
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=98.24 E-value=1.4e-06 Score=87.67 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=54.2
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-.||..| ++|++.|+++|+|++|+||.|-.+. +.....+...++++.|++|+.|+++||.+|++||.
T Consensus 50 ~d~y~~y--~eDi~l~~~~G~~~~R~si~Wsri~-p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 50 CDHYHRY--EEDVALMKELGVDAYRFSIAWPRIF-PEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred ccHHHhH--HHHHHHHHHcCCCeEEcccchhhcc-cCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 3456666 6999999999999999999887654 33112344458999999999999999999999966
No 9
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.76 E-value=4e-05 Score=78.20 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=54.5
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCC-CCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDP-TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~-~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-.||..| ++|++.|+++|+|+.|++|.|.-+... .+..| -..++++-+++|+.|+++||.+||.||.
T Consensus 67 ~D~Yhry--~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~-n~~~~~~Y~~~i~~l~~~gi~p~VtL~H 134 (474)
T PRK09852 67 IDFYHRY--KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTP-NQQGIAFYRSVFEECKKYGIEPLVTLCH 134 (474)
T ss_pred Cchhhhh--HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 3567777 799999999999999999999866431 11122 3458999999999999999999999986
No 10
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=97.71 E-value=6.3e-05 Score=67.99 Aligned_cols=108 Identities=25% Similarity=0.307 Sum_probs=57.6
Q ss_pred cceEeccCcEeeccCCC------CCcCcCCCCCCCCCCcceeeeeeecccccccccCCChhhhhcccccccccceEEEee
Q 020265 35 IKAVNLGGWLVTEGWIK------PSLFDGIPNKDFLDGTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRI 108 (328)
Q Consensus 35 ~~GVNLG~WlVlE~wi~------pslF~~~~~~~~~~g~~v~l~~~~~~kyv~ae~gg~~~l~Anr~~~~hWEtF~l~~i 108 (328)
+..+.-|.--+.||=-. ...|..+. +.+...++||+ .+|+||+.+.-| .++|++..++.+|+|+++.
T Consensus 4 i~a~d~G~~t~~ePhd~~~~p~p~qV~va~~---v~~~~~iafKs-~~GkYLs~Dk~G--~v~a~sdAiGp~E~f~~V~- 76 (191)
T PF06229_consen 4 IEALDNGLFTTGEPHDVGEGPDPRQVWVATR---VPGDEKIAFKS-GHGKYLSCDKDG--IVSARSDAIGPQEQFEPVF- 76 (191)
T ss_dssp EEE-TTS-EEE----SSS----TTT-EEEEE-----SSS-EEEEE-TTS-BEEE-SSS--BEEE--SS--TTTBEEEE--
T ss_pred eeeeccCCccccCCCcCCCCCChhHeEEEEE---ecCCCceEeec-cCccEEEEcCCC--cEEEEeecCCCceEEEEEE-
Confidence 33444455566666665 34454321 11346799997 699999998765 4889999999999999988
Q ss_pred ccccEEEee-cCccEEEeecCCCCceeeecCCCCCCCCceEEEEc
Q 020265 109 NETNFHFRV-FNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRN 152 (328)
Q Consensus 109 te~d~~lra-~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~ 152 (328)
++++.++.+ .|++|+++.. . +.+.|++.+.+..|.+.|--+
T Consensus 77 ~~~~~a~~~~~~~~FLs~~~-~--~~i~a~s~~a~~~e~~~iR~~ 118 (191)
T PF06229_consen 77 QDGKPALFSSSNNKFLSVDE-E--GDIRADSKTAGENEMIKIRSD 118 (191)
T ss_dssp STT--EEEE-TTS-BEEE-S-S--S-EEE--S---TTT--EEEE-
T ss_pred CCCCeEEEecCCCeEEEEec-c--cCeeeccccCCCCceEEEEEe
Confidence 567788777 8999999987 3 339999999999998876433
No 11
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.69 E-value=4.7e-05 Score=75.01 Aligned_cols=61 Identities=23% Similarity=0.286 Sum_probs=42.6
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee--CCCCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI--TISVT 295 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl--H~~~p 295 (328)
.-++|++.|+++|+|+|||..-.|...++.+ ..| .|+.||++|+.|+++||+|||-+ +. +|
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~y---dF~~lD~~l~~a~~~Gi~viL~~~~~~-~P 73 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQY---DFSWLDRVLDLAAKHGIKVILGTPTAA-PP 73 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTT-S-
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCC-Cee---ecHHHHHHHHHHHhccCeEEEEecccc-cc
Confidence 3479999999999999999655555444433 234 58999999999999999999987 44 55
No 12
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.49 E-value=0.00021 Score=72.97 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=55.2
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC-CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~-~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+--+||..| ++|++.|+++|+|+.|++|.|--+. |.. ....-..++++-+++|+.++++||..||.||.
T Consensus 63 ~A~D~Yhry--~EDI~Lm~elG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H 132 (477)
T PRK15014 63 EAVDFYGHY--KEDIKLFAEMGFKCFRTSIAWTRIF-PKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH 132 (477)
T ss_pred cccCccccc--HHHHHHHHHcCCCEEEecccceeec-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC
Confidence 344678788 8999999999999999999987554 221 11123458999999999999999999999954
No 13
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.0011 Score=67.17 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=53.6
Q ss_pred hcccCCCcHHHHHHHHhcCCcEEEeccccccccC-CCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 224 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASD-PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 224 ~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~-~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.||..| ++|++.++++|+|+.|+.|.|--++. ....+|- +.++++-+++|+-|.++||.-++-||.
T Consensus 56 d~YhrY--keDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N-~~gl~fY~~l~del~~~gIep~vTL~H 122 (460)
T COG2723 56 DFYHRY--KEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVN-EKGLRFYDRLFDELKARGIEPFVTLYH 122 (460)
T ss_pred chhhhh--HHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcC-HHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 566667 79999999999999999999865542 2221232 348999999999999999999999998
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.96 E-value=0.0014 Score=66.78 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=55.6
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
=-+||..| ++|++.|+++|+|+.|+.|.|--+. |....+.-..++++=+++|+.++++||.-+|.||.
T Consensus 49 a~d~Y~ry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H 116 (469)
T PRK13511 49 ASDFYHRY--PEDLKLAEEFGVNGIRISIAWSRIF-PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH 116 (469)
T ss_pred ccchhhhh--HHHHHHHHHhCCCEEEeeccHhhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 34577777 8999999999999999999986554 32222333458999999999999999999999987
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.95 E-value=0.0007 Score=68.68 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=50.3
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC-CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~-~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-+||..| ++|++.|+++|+|+.|+.|.|--+. |.+ .......++++-+++|+.++++||..|+.||.
T Consensus 54 ~d~y~~y--~eDi~l~~~lg~~~yRfsi~W~Ri~-P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H 121 (455)
T PF00232_consen 54 CDHYHRY--KEDIALMKELGVNAYRFSISWSRIF-PDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH 121 (455)
T ss_dssp TGHHHHH--HHHHHHHHHHT-SEEEEE--HHHHS-TTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred ccchhhh--hHHHHHHHhhccceeeeecchhhee-ecccccccCHhHhhhhHHHHHHHHhhccceeeeeee
Confidence 4566666 7999999999999999999987554 432 22333458999999999999999999999996
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.86 E-value=0.0028 Score=62.01 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=37.7
Q ss_pred cHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++-|+.|++.|+|.|||=+ | -+|.. .-+ ..+++..++.+.|+++||+|+||+|-
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--w--v~P~~-~g~--~~~~~~~~~akrak~~Gm~vlldfHY 80 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--W--VNPYD-GGY--NDLEDVIALAKRAKAAGMKVLLDFHY 80 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-TT-TTT--TSHHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred CCCHHHHHHhcCCCeEEEEe--c--cCCcc-ccc--CCHHHHHHHHHHHHHCCCeEEEeecc
Confidence 45778899999999999988 4 23321 011 26899999999999999999999998
No 17
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.80 E-value=0.0023 Score=65.38 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=55.5
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
=-.||..| ++|++.|+++|+|+.|+.|.|--+. |....++-..++++=+++|+.++++||..||-||.
T Consensus 48 a~d~yhry--~eDi~L~~~lG~~~yRfSIsWsRI~-P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H 115 (467)
T TIGR01233 48 ASDFYHKY--PVDLELAEEYGVNGIRISIAWSRIF-PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH 115 (467)
T ss_pred cCchhhhH--HHHHHHHHHcCCCEEEEecchhhcc-CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC
Confidence 34567777 7999999999999999999986554 32223444458999999999999999999999987
No 18
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.0032 Score=60.38 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCC--CCCCCCccc--cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGG--SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~--~~~~p~~~~--~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.+-|+.|+++|+|.|||-| +-+| +.+.+|-.| .++..-.+-+.|++.||+|++|+|-
T Consensus 66 qD~~~iLK~~GvNyvRlRv----wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV----WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE----ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 4567788999999999988 2233 234566432 3455555556788999999999998
No 19
>PLN02998 beta-glucosidase
Probab=96.75 E-value=0.0025 Score=65.58 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=55.5
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
=-+||..| ++|++.|+++|+|+-|+.|.|--+. |+...++-..++++=+++|+.++++||..|+-||.
T Consensus 77 a~D~Yhry--~EDi~lmk~lG~~~YRfSIsWsRI~-P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H 144 (497)
T PLN02998 77 ACDQYHKY--KEDVKLMADMGLEAYRFSISWSRLL-PSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH 144 (497)
T ss_pred cccHHHhh--HHHHHHHHHcCCCeEEeeccHHhcC-cCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 34567777 7999999999999999999986554 32222344458999999999999999999999987
No 20
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.75 E-value=0.0026 Score=65.08 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=54.2
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC-CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~-~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-+||..| ++|++.|+++|+|+.|+.|.|--+. |.. ....-..++++=+++|+.++++||.-||-||.
T Consensus 63 ~D~Yhry--~eDi~Lm~~lG~~~yRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H 130 (476)
T PRK09589 63 IDFYHRY--KEDIALFAEMGFKCFRTSIAWTRIF-PQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH 130 (476)
T ss_pred ccHHHhh--HHHHHHHHHcCCCEEEeccchhhcC-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4567677 7999999999999999999986554 321 11223458999999999999999999999987
No 21
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.72 E-value=0.0028 Score=64.94 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=54.1
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC-CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP-PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~-~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-.||..| ++|++.|+++|+|+.|+.|.|--+. |.. ....-..++++=+++|+.++++||..++-||.
T Consensus 69 ~d~Yhry--~eDi~Lm~~lG~~aYRfSIsWsRI~-P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H 136 (478)
T PRK09593 69 IDMYHHY--KEDIALFAEMGFKTYRMSIAWTRIF-PKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH 136 (478)
T ss_pred cchHHhh--HHHHHHHHHcCCCEEEEecchhhcc-cCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3567777 7999999999999999999986554 321 11223458999999999999999999999976
No 22
>PLN02814 beta-glucosidase
Probab=96.69 E-value=0.0029 Score=65.17 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=54.7
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-+||..| ++|++.|+++|+|+-|+.|.|--+. |+...+.-..++++=+++|+.|+++||..++-||.
T Consensus 73 ~D~Yhry--~EDI~L~k~lG~~ayRfSIsWsRI~-P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H 139 (504)
T PLN02814 73 SDGYHKY--KEDVKLMAEMGLESFRFSISWSRLI-PNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH 139 (504)
T ss_pred ccHHHhh--HHHHHHHHHcCCCEEEEeccHhhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence 3566667 7999999999999999999986554 32222333458999999999999999999999987
No 23
>PLN02849 beta-glucosidase
Probab=96.65 E-value=0.0028 Score=65.27 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=54.3
Q ss_pred hcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 224 KHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 224 ~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+||..| ++|++.|+++|+|+-|+.|.|--+. |....+.-..++++=+++|+.++++||.-++-||.
T Consensus 76 D~YhrY--~eDI~Lm~~lG~~aYRfSIsWsRI~-P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H 141 (503)
T PLN02849 76 DGYHKY--KEDVKLMVETGLDAFRFSISWSRLI-PNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH 141 (503)
T ss_pred cHHHhH--HHHHHHHHHcCCCeEEEeccHHhcC-cCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC
Confidence 466666 7999999999999999999986554 33223344458999999999999999999999987
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=96.31 E-value=0.0051 Score=59.75 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
++-++.||++|+|+|-++|.|-..+ +.++ -|.-....-|++.|+.|+++||+|||-.
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he-~~~g-~~df~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHE-PEEG-QFDFTGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHS-SBTT-B---SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHhCCcceEEEeccccccC-CCCC-cccccchhhHHHHHHHHHHcCcEEEecc
Confidence 4779999999999999999776543 3332 3432345679999999999999999863
No 25
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=96.19 E-value=0.067 Score=46.23 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=66.3
Q ss_pred CCcceeeeeeecccccccccCC-ChhhhhcccccccccceEEEeecccc--EEEeecCccEEEeecCCC-----Cceeee
Q 020265 65 DGTQLQFKSVTVGKYLCAENGG-GTIVVANRTSASGWETFKLWRINETN--FHFRVFNKQFIGLDTNGN-----GIDIVA 136 (328)
Q Consensus 65 ~g~~v~l~~~~~~kyv~ae~gg-~~~l~Anr~~~~hWEtF~l~~ite~d--~~lra~n~~~v~a~~~~g-----~~~l~A 136 (328)
++..|-|++ ..+|||.|+.-| +..+-.++. .+=..|++..+.++. +-||++-|+|+++.+ .. .+..+.
T Consensus 6 d~~~VRLRS-~~~kYL~ADeDg~~Vs~~~~~~--s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~-~~~~lG~~G~~v~ 81 (142)
T PF04601_consen 6 DGKHVRLRS-HHGKYLHADEDGEGVSQDRRGA--SLNAAWTVERVPGSPNYVRLRSAYGRYLAASD-EPALLGHTGRRVV 81 (142)
T ss_pred CCCEEEEEe-cCCCEEEEcCCCCeEEECCCCC--CCcceEEEEEecCCCCEEEEeeccCceEeccC-CcCCCCCCCCEEE
Confidence 477889999 899999987533 333333333 345678888877633 689999999999975 21 122222
Q ss_pred cCCCCCCCCceEEEEccCCCceeEEEcCCceEEeeccc
Q 020265 137 ESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTE 174 (328)
Q Consensus 137 ~~~~~g~wE~F~~~~~~~~~~~v~lra~nG~~v~a~~~ 174 (328)
+..-........++.-.+| ..|.||..+|+||.|+++
T Consensus 82 Q~~~~~~d~~~~Wepvr~g-~~V~Lr~~~gr~LRANG~ 118 (142)
T PF04601_consen 82 QTDPDRLDSSVEWEPVRDG-FYVKLRHRSGRYLRANGG 118 (142)
T ss_pred ecCCccCCCCceEEEecCC-CEEEEEecCCceEEcCCC
Confidence 2221112222333333343 689999999999999864
No 26
>smart00642 Aamy Alpha-amylase domain.
Probab=96.16 E-value=0.018 Score=50.72 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHhcCCcEEEecccccccc--------CCCC---CCCCccccHHHHHHHHHHHHhCCCceEEeeC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMAS--------DPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~--------~~~~---~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
.+++|+++|+++|-|+=-+-... ++.. .+|- -|..+.|+++|+.|+++||+||+|+=
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~-~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPR-FGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcc-cCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 36689999999999765332211 1100 1121 15789999999999999999999983
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=95.92 E-value=0.015 Score=53.98 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCC--C-----ccccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAP--Y-----VGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p--~-----~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-+++|+++|+++|-|+=-+-.-.....+.| | .-|..+.|+++|+.|+++||+||||+
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3478999999999997642221000011111 1 01578999999999999999999999
No 28
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.67 E-value=0.023 Score=59.96 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=39.2
Q ss_pred HHHHHhcCCcEEEe-cccc------ccccCCC-C--CCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 235 FKFIAGNGLNAVRI-PVGW------WMASDPT-P--PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 235 f~~ia~~G~N~VRi-Pv~y------w~~~~~~-~--~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++|+++|+|+|=| ||.- |-. ++. . .+|- -|..+.|+++|+.|+++||+||||+
T Consensus 163 ~dyl~~LGvt~i~L~Pi~e~~~~~~wGY-~~~~y~~~~~~-~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 163 IPYVKELGFTHIELLPVAEHPFDGSWGY-QVTGYYAPTSR-FGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCcccccc-cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 48999999999998 8831 211 111 0 1111 1467899999999999999999997
No 29
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.49 E-value=0.03 Score=58.21 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcEEEe-ccc------cccccCCC---CCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 234 DFKFIAGNGLNAVRI-PVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 234 Df~~ia~~G~N~VRi-Pv~------yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
-+++|+++|+|+|-| ||. +|-. ++. ..+|- -|..+.|+++|+.|+++||+||||+
T Consensus 116 ~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY-~~~~~~~~~~~-~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 116 KLPYLADLGITAIELMPVAQFPGTRGWGY-DGVLPYAPHNA-YGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred hhHHHHHcCCCEEEeCccccCCCCCCCCC-CccCccccccc-cCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 378999999999994 551 1211 110 01111 1468999999999999999999997
No 30
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.31 E-value=0.035 Score=58.70 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=39.0
Q ss_pred HHHHHhcCCcEEE-eccc------cccccCCC---CCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 235 FKFIAGNGLNAVR-IPVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 235 f~~ia~~G~N~VR-iPv~------yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++|+++|+|+|= .||- .|-. ++. ..+|- -|..+.|+++|+.|+++||+||||+
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY-~~~~y~~i~~~-~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGY-QLTGYFAPTSR-YGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCC-CCcCcCcCCCC-CCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5899999999999 5761 2211 110 01121 1578999999999999999999997
No 31
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.051 Score=58.01 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=54.6
Q ss_pred HHHhhcccCCCcHHHHHHHHhcCCcEEE-eccccccccCCC---------CCCC---------Ccc-----ccHHHHHHH
Q 020265 220 QVMRKHWSTYIVEDDFKFIAGNGLNAVR-IPVGWWMASDPT---------PPAP---------YVG-----GSLRALDNA 275 (328)
Q Consensus 220 ~~l~~h~~t~ite~Df~~ia~~G~N~VR-iPv~yw~~~~~~---------~~~p---------~~~-----~~~~~ld~~ 275 (328)
+.+++-+.....+..+++|++.|+++|. +||-.+..+... .++| |.. .....++.+
T Consensus 191 ~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~m 270 (697)
T COG1523 191 EELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDM 270 (697)
T ss_pred hhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHH
Confidence 3344444455556669999999999999 799755432210 1122 211 247899999
Q ss_pred HHHHHhCCCceEEee---CCCCCCCCCC
Q 020265 276 FTWAGYAFFPVPSDI---TISVTTSQDL 300 (328)
Q Consensus 276 i~wa~~~gl~VilDl---H~~~pG~qn~ 300 (328)
|+.++++||.||||+ |. +-|...+
T Consensus 271 V~~lHkaGI~VILDVVfNHT-ae~~~~g 297 (697)
T COG1523 271 VKALHKAGIEVILDVVFNHT-AEGNELG 297 (697)
T ss_pred HHHHHHcCCEEEEEEeccCc-ccccCcC
Confidence 999999999999998 77 6554433
No 32
>PLN00196 alpha-amylase; Provisional
Probab=94.77 E-value=0.098 Score=52.97 Aligned_cols=59 Identities=22% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCC---Cc-----cccHHHHHHHHHHHHhCCCceEEee---CC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAP---YV-----GGSLRALDNAFTWAGYAFFPVPSDI---TI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p---~~-----~~~~~~ld~~i~wa~~~gl~VilDl---H~ 292 (328)
+.+.+|+++|+++|=||=.+.... ...+.| |. -|..+.|+++|+.|+++||+||+|+ |.
T Consensus 48 ~kldyL~~LGvtaIWL~P~~~s~s-~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 48 GKVDDIAAAGITHVWLPPPSHSVS-EQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCC-CCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 568999999999999985432211 111111 10 1567899999999999999999998 66
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.69 E-value=0.064 Score=57.70 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=38.6
Q ss_pred HHHHHhcCCcEEE-eccc------cccccCCC---CCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 235 FKFIAGNGLNAVR-IPVG------WWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 235 f~~ia~~G~N~VR-iPv~------yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++|+++|+|+|= .||- +|-. ++. ..+|-+ |..+.|+++|+.|+++||+||||+
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY-~~~~y~ai~~~~-Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGY-QPTGYYAPTSRF-GTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5889999999998 4662 1211 111 012211 468999999999999999999997
No 34
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.56 E-value=0.044 Score=58.22 Aligned_cols=52 Identities=29% Similarity=0.346 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcEEEe-ccccccccCCCCCCCCccccHHHHHHH-HHHHHhCCCceEE
Q 020265 232 EDDFKFIAGNGLNAVRI-PVGWWMASDPTPPAPYVGGSLRALDNA-FTWAGYAFFPVPS 288 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRi-Pv~yw~~~~~~~~~p~~~~~~~~ld~~-i~wa~~~gl~Vil 288 (328)
++|++.++++|+|+||+ .|.|- +..+..+ .| .|.-+|.. ++.|.+.||+|||
T Consensus 33 ~ddl~~mk~~G~N~V~ig~faW~-~~eP~eG-~f---df~~~D~~~l~~a~~~Gl~vil 86 (673)
T COG1874 33 MDDLRKMKALGLNTVRIGYFAWN-LHEPEEG-KF---DFTWLDEIFLERAYKAGLYVIL 86 (673)
T ss_pred HHHHHHHHHhCCCeeEeeeEEee-ccCcccc-cc---CcccchHHHHHHHHhcCceEEE
Confidence 68999999999999999 88665 3344333 23 24456666 9999999999998
No 35
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.072 Score=56.21 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=41.7
Q ss_pred cHHHHHHHHhcCCcEEE-eccccc----ccc-CC----CCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVR-IPVGWW----MAS-DP----TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VR-iPv~yw----~~~-~~----~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++-+.+|+++|+++|- +||.=. .++ ++ .|...| |.-+-|+++|+.|+++||.||||.
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sry--GtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRY--GTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccC--CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 34556789999999999 688311 111 11 112223 578999999999999999999997
No 36
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=94.43 E-value=0.1 Score=54.40 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCcEEEec-c--------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIP-V--------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiP-v--------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.+++|+++|+++|=|+ | +|+.. +-..-+|-+ |..+.|+++|+.|+++||+||||+=-
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~-d~~~id~~~-Gt~~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVA-NYTAIDPTY-GTLDDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCCcc-cCCCcCccc-CCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45889999999999863 3 23321 111112222 57899999999999999999999943
No 37
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=94.42 E-value=0.11 Score=54.02 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCC--------CCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTP--------PAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~--------~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-+++|+++|+++|=|+=-|-.-....+ -+|- -|..+.|+++|+.|+++||+||||+
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~-~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPL-FGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3478999999999986432221111001 1222 1578999999999999999999998
No 38
>PLN02960 alpha-amylase
Probab=94.29 E-value=0.085 Score=57.50 Aligned_cols=58 Identities=19% Similarity=0.074 Sum_probs=40.6
Q ss_pred cHHHHHHHHhcCCcEEE-eccc----c--ccccCCC-CC--CCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVR-IPVG----W--WMASDPT-PP--APYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VR-iPv~----y--w~~~~~~-~~--~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++-+.+|+++|+|+|- +||. + |-. ++. .. ++-+ |..+.|+++|+.|+++||+||||+
T Consensus 419 ~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY-~~~~yfa~~~~y-Gtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 419 TQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGY-KVTNFFAVSSRF-GTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCC-CcccCCCccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34458899999999999 5662 1 110 110 01 1111 467999999999999999999997
No 39
>PRK12568 glycogen branching enzyme; Provisional
Probab=94.27 E-value=0.092 Score=56.42 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCcEEE-eccc------cccccCCC-CC--CCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVR-IPVG------WWMASDPT-PP--APYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VR-iPv~------yw~~~~~~-~~--~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
++-+.+|+++|+|+|= +||- +|-. ++. .. +|- -|..+.|+++|+.|+++||+||||+
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY-~~~~~~a~~~~-~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGY-QPLGLYAPTAR-HGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCC-CCCcCCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4457899999999998 5662 2311 111 11 121 1568999999999999999999998
No 40
>PLN02361 alpha-amylase
Probab=93.96 E-value=0.17 Score=50.92 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCC---c----cccHHHHHHHHHHHHhCCCceEEee---CC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY---V----GGSLRALDNAFTWAGYAFFPVPSDI---TI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~---~----~~~~~~ld~~i~wa~~~gl~VilDl---H~ 292 (328)
+.+++|+++|++.|=||=.+-... ...+.|. . -|..+.|+++|+.|+++||+||+|+ |.
T Consensus 33 ~kl~~l~~lG~t~iwl~P~~~~~~-~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 33 GKVPDLAKSGFTSAWLPPPSQSLA-PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHcCCCEEEeCCCCcCCC-CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 458899999999999987543221 1122221 0 1578999999999999999999999 65
No 41
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=93.86 E-value=0.11 Score=55.72 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=39.1
Q ss_pred HHHHHHhcCCcEEEe-ccc---------------cccccCCC---CCCCCcc--ccHHHHHHHHHHHHhCCCceEEee
Q 020265 234 DFKFIAGNGLNAVRI-PVG---------------WWMASDPT---PPAPYVG--GSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 234 Df~~ia~~G~N~VRi-Pv~---------------yw~~~~~~---~~~p~~~--~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
-+++|+++|+|+|=| ||- ||-. ++. ..+|-+. +..+.|+++|+.|+++||+||||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGY-d~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGY-NTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCc-CcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999984 552 1211 110 1122121 357899999999999999999998
No 42
>PRK10785 maltodextrin glucosidase; Provisional
Probab=93.66 E-value=0.15 Score=53.67 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCcEEEe-ccc-------cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRI-PVG-------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRi-Pv~-------yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-+++|+++|+|+|=| ||- |+.. +-..-+|-. |..+.|+++|+.|+++||+||||+=-
T Consensus 183 ~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~-Dy~~iDp~~-Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 183 EKLPYLKKLGVTALYLNPIFTAPSVHKYDTE-DYRHVDPQL-GGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred HHHHHHHHcCCCEEEeCCcccCCCCCCcCcc-cccccCccc-CCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3489999999999996 441 2211 100112322 57899999999999999999999943
No 43
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.64 E-value=0.14 Score=55.27 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=40.4
Q ss_pred cHHHHHHHHhcCCcEEEe-ccc------cccc--cCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVRI-PVG------WWMA--SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRi-Pv~------yw~~--~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++-+.+|+++|+|+|-| ||- .|-. .+-...+|.. |..+.|+++|+.|+++||+||||+
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345689999999999984 551 1111 0100112221 467899999999999999999997
No 44
>PRK03705 glycogen debranching enzyme; Provisional
Probab=93.61 E-value=0.14 Score=54.54 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=38.4
Q ss_pred HHHHHHhcCCcEEEe-ccc---------------cccccCC---CCCCCCcc----ccHHHHHHHHHHHHhCCCceEEee
Q 020265 234 DFKFIAGNGLNAVRI-PVG---------------WWMASDP---TPPAPYVG----GSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 234 Df~~ia~~G~N~VRi-Pv~---------------yw~~~~~---~~~~p~~~----~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
-+++|+++|+|+|=| ||- ||-. ++ ...+|-+. ...+.|+++|+.|+++||+||||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGY-d~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGY-NPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCc-ccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999985 551 1210 11 01122111 135789999999999999999998
No 45
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.47 E-value=0.15 Score=57.72 Aligned_cols=57 Identities=21% Similarity=0.120 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcEEE-eccc------cccccCCC-CCCCCc-cccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVR-IPVG------WWMASDPT-PPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VR-iPv~------yw~~~~~~-~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-+++|+++|+|+|= +||. +|-. ++. ...|-. -|..+-|+++|+.|+++||+||||+
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY-~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGY-QVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCC-CccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 347899999999998 6772 2311 111 111110 1468999999999999999999997
No 46
>PRK09505 malS alpha-amylase; Reviewed
Probab=93.37 E-value=0.21 Score=53.42 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHhcCCcEEEeccc-----------------------cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 234 DFKFIAGNGLNAVRIPVG-----------------------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~-----------------------yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
-+++|+++|+++|=|+=. ||.. +-..-+|- -|..+.|+++|+.|+++||+||+|+
T Consensus 235 kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~-D~~~id~~-~Gt~~dfk~Lv~~aH~~Gi~VilD~ 312 (683)
T PRK09505 235 KLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTL-DWTKLDAN-MGTEADLRTLVDEAHQRGIRILFDV 312 (683)
T ss_pred hhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCcc-ccccCCCC-CCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999999986421 2211 10011221 1578999999999999999999997
Q ss_pred CC
Q 020265 291 TI 292 (328)
Q Consensus 291 H~ 292 (328)
=-
T Consensus 313 V~ 314 (683)
T PRK09505 313 VM 314 (683)
T ss_pred Cc
Confidence 44
No 47
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=93.28 E-value=0.24 Score=51.44 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=39.8
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCC--------CCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~--------~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-+++|++.|+|+|=|+=-|-.-.....+ +|-. |..+.++++|+.|+++||+||+|+=-
T Consensus 33 ~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~-Gt~~df~~Lv~~ah~~Gi~vilD~V~ 98 (539)
T TIGR02456 33 KLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF-GTIDDFKDFVDEAHARGMRVIIDLVL 98 (539)
T ss_pred hHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh-CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3889999999999864322110000011 1211 56899999999999999999999833
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.12 E-value=0.23 Score=50.74 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhcCCcEEEecccccccc-------CCCCC------------CCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMAS-------DPTPP------------APYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~-------~~~~~------------~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
|++. +++|+++|++.|=|+=.+.... ++.+. +|- -|..+.|+++|+.|+++||+||+|+
T Consensus 24 I~~k-ldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~-fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 24 LAER-APELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTK-YGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHH-HHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcC-cCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5544 8899999999999765332210 00000 121 1578999999999999999999998
No 49
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.88 E-value=0.22 Score=53.00 Aligned_cols=55 Identities=18% Similarity=0.043 Sum_probs=38.5
Q ss_pred HHHHHhcCCcEEE-eccc------cccccCCC-CCCCCc-cccHHHHHHHHHHHHhCCCceEEee
Q 020265 235 FKFIAGNGLNAVR-IPVG------WWMASDPT-PPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 235 f~~ia~~G~N~VR-iPv~------yw~~~~~~-~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++|+++|+|+|- +||- +|-. ++. ...|-. -|..+.|+++|+.|+++||+||||+
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4789999999999 5772 2211 110 011100 1468999999999999999999997
No 50
>PLN02784 alpha-amylase
Probab=92.60 E-value=0.59 Score=51.07 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCC--c-----cccHHHHHHHHHHHHhCCCceEEee---CCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY--V-----GGSLRALDNAFTWAGYAFFPVPSDI---TISVTT 296 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~--~-----~~~~~~ld~~i~wa~~~gl~VilDl---H~~~pG 296 (328)
++.+++|+++|+++|=||=.+-... ...+.|+ + -|..+.|+.+|+.|+++||+||+|+ |. +..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s-~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~-ag~ 596 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVS-PEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHR-CAH 596 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCC-CCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccc-ccc
Confidence 3568999999999999987543221 1123332 1 1568999999999999999999998 76 543
No 51
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.44 E-value=0.26 Score=51.92 Aligned_cols=57 Identities=25% Similarity=0.443 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCcEEEe-ccc-------------c-ccccCCCC---C------CCCc-cccHHHHHHHHHHHHhCCCceE
Q 020265 233 DDFKFIAGNGLNAVRI-PVG-------------W-WMASDPTP---P------APYV-GGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRi-Pv~-------------y-w~~~~~~~---~------~p~~-~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
+-+++|+++|+|+|=| ||- | |-. ++.. . +|.. .+..+.|+++|+.|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY-~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGY-DPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCC-CCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 3489999999999984 662 1 111 1100 0 1110 0125889999999999999999
Q ss_pred Eee
Q 020265 288 SDI 290 (328)
Q Consensus 288 lDl 290 (328)
||+
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 998
No 52
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=92.42 E-value=0.64 Score=40.21 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=44.8
Q ss_pred ccEEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEcCCceEEeecc
Q 020265 111 TNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKT 173 (328)
Q Consensus 111 ~d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra~nG~~v~a~~ 173 (328)
.-+.||+..+||+.|+. .|.+ +.-.+.....+..+.++.-.++.+-|.||+.-|+||.+..
T Consensus 8 ~~VRLRS~~~kYL~ADe-Dg~~-Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~ 68 (142)
T PF04601_consen 8 KHVRLRSHHGKYLHADE-DGEG-VSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASD 68 (142)
T ss_pred CEEEEEecCCCEEEEcC-CCCe-EEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccC
Confidence 44799999999999997 3232 3333333345667778777776789999999999999853
No 53
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=92.40 E-value=0.21 Score=50.10 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCcEEEe-cc--------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRI-PV--------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRi-Pv--------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-+++|+++|++.|=| |+ +||.. +-..-+|- -|..+.++++++.|+++||+||+|+--
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~-Dy~~id~~-~Gt~~d~~~li~~~H~~gi~vi~D~V~ 99 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVS-DYTKVDPH-FGTEEDFKELVEEAHKRGIKVILDLVF 99 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCcccc-chhhcCcc-cCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4578899999999953 33 34421 11112231 257999999999999999999999954
No 54
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=92.34 E-value=0.98 Score=37.41 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=52.9
Q ss_pred EEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeeccceeEeecc
Q 020265 113 FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADY 181 (328)
Q Consensus 113 ~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~~~~l~A~~ 181 (328)
++|-+.+++|+++.. ++.+.+..+..+....|.++..+. +.|.||+ ..++||+.+..|.|.+..
T Consensus 3 ~~Ly~~~~~~L~i~~---~g~V~gt~~~~~~~s~~~i~~~~~--g~V~i~~~~s~~YLcmn~~G~ly~~~ 67 (122)
T PF00167_consen 3 VQLYCRTGYFLQINP---NGTVDGTGDDNSPYSVFEIHSVGF--GVVRIRGVKSCRYLCMNKCGRLYGSK 67 (122)
T ss_dssp EEEEETTSEEEEEET---TSBEEEESSTTSTTGEEEEEEEET--TEEEEEETTTTEEEEEBTTSBEEEES
T ss_pred EEEEECCCeEEEECC---CCeEeCCCCcCcceeEEEEEeccc--eEEEEEEecceEEEEECCCCeEcccc
Confidence 356666799999987 567888888888899999998875 5899999 689999999878887654
No 55
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=92.24 E-value=0.042 Score=55.04 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=55.7
Q ss_pred CCCCccceEeccCcEeeccCCCCCcCcCCCCCCCCCCcceeeeeeecccccccccCCChhhhhcccccccccceEEEeec
Q 020265 30 NPAFRIKAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTQLQFKSVTVGKYLCAENGGGTIVVANRTSASGWETFKLWRIN 109 (328)
Q Consensus 30 ~~~~~~~GVNLG~WlVlE~wi~pslF~~~~~~~~~~g~~v~l~~~~~~kyv~ae~gg~~~l~Anr~~~~hWEtF~l~~it 109 (328)
+....++|||+| +++|||+++.+|.--+. .....-.+....|..++.. ++.-+.+ .||.+| ++
T Consensus 13 ~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~lg~~------~~~~~~~-~~w~~~----~~ 75 (407)
T COG2730 13 VLTFLVSGVNLG--LVLEPTIADGLFKTDPK----ESPGQLVGVSWFGLNLGNH------LAQGLLE-SHWGNF----IT 75 (407)
T ss_pred cceEEEeccccc--ceeeeeecCceeecCCC----CCcceeecccccceecCch------hhcccch-hccchh----hh
Confidence 345689999999 99999999998721111 1111123444455555432 4455566 699998 99
Q ss_pred cccE-EEeecCccEEEeec
Q 020265 110 ETNF-HFRVFNKQFIGLDT 127 (328)
Q Consensus 110 e~d~-~lra~n~~~v~a~~ 127 (328)
+.++ .++..+.++||++-
T Consensus 76 ~~~~~~ik~~G~n~VRiPi 94 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPI 94 (407)
T ss_pred hhHHHHHHHcCCcEEEccc
Confidence 8887 77778999999986
No 56
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=92.13 E-value=0.39 Score=42.39 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCcEEEecc-cccccc-CCCCC--CCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPV-GWWMAS-DPTPP--APYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv-~yw~~~-~~~~~--~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+++|+.|++.|+++|=|.- +|.-.. .+... .-+....-+.|+.+++.|.++||+|++-|.-
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~ 87 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF 87 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC
Confidence 4789999999999997663 121110 01100 0122235689999999999999999999987
No 57
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=91.70 E-value=0.34 Score=55.21 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCcEEE-ecccc---------------ccc--cCCCCCCCCcc-ccHHHHHHHHHHHHhCCCceEEee--
Q 020265 232 EDDFKFIAGNGLNAVR-IPVGW---------------WMA--SDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDI-- 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VR-iPv~y---------------w~~--~~~~~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDl-- 290 (328)
++.+++|+++|+|+|= +||.- |-. .+-...+|-+. +..+.++++|+.|+++||+||||+
T Consensus 190 ~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~ 269 (1221)
T PRK14510 190 PEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVF 269 (1221)
T ss_pred chhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 3568899999999998 46621 110 00001122111 267899999999999999999997
Q ss_pred -CCCCCC
Q 020265 291 -TISVTT 296 (328)
Q Consensus 291 -H~~~pG 296 (328)
|. ..+
T Consensus 270 NHt-~~~ 275 (1221)
T PRK14510 270 NHT-GES 275 (1221)
T ss_pred ccc-cCC
Confidence 66 544
No 58
>PLN03059 beta-galactosidase; Provisional
Probab=91.53 E-value=0.35 Score=52.61 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
++-++.+|++|+|+|-.-|.|- +-++.++ -|.-.+..-|.+.|+.|++.||+|||=
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn-~HEp~~G-~~dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWN-GHEPSPG-NYYFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccCCCCC-eeeccchHHHHHHHHHHHHcCCEEEec
Confidence 4668899999999999999665 4344433 333235678999999999999999984
No 59
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=91.52 E-value=0.31 Score=45.05 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=61.0
Q ss_pred cccceEEEeeccccEEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEcCCceEEeecc
Q 020265 99 GWETFKLWRINETNFHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKT 173 (328)
Q Consensus 99 hWEtF~l~~ite~d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra~nG~~v~a~~ 173 (328)
.=|.|.++.+.+.+|+|++-=|+|++++. .+-+++.+.++|.=|+|..+-+. ++..+.++|+.+...+.
T Consensus 82 p~e~f~avki~dsrIaLKsGyGKYlsins---dglvvg~qeAvG~~EQw~~vFq~---~r~a~~as~s~~~~~~e 150 (246)
T KOG3962|consen 82 PEEQFMAVKISDSRIALKSGYGKYLSINS---DGLVVGRQEAVGSREQWEPVFQE---GRMALLASNSCFIRCNE 150 (246)
T ss_pred chhhEEEEEccCceEEecccccceeeecC---CccEEEehhhcCcHhhchhhhhc---cceEEeeccceeEEech
Confidence 45889999999999999998899999988 66799999999999999988887 57899999988877654
No 60
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton]
Probab=91.24 E-value=0.72 Score=42.65 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=55.6
Q ss_pred cEEEeecCccEEEeecCCC---CceeeecCCCCCCCCceEEEEccCCCceeEEEcCCceEEeeccceeEeeccCCCCC
Q 020265 112 NFHFRVFNKQFIGLDTNGN---GIDIVAESNTPRSSETFEIVRNSNDLSRVRIKAPNGFFLQAKTEELVTADYEGATS 186 (328)
Q Consensus 112 d~~lra~n~~~v~a~~~~g---~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra~nG~~v~a~~~~~l~A~~~~~~~ 186 (328)
.+++.-..+.|+.+..|++ +.|..+-. -|.+-|.|..+.-+| ++|+||+.-|+||+.+..+.|.+....+++
T Consensus 49 ~v~ie~~~~~yl~a~dng~ft~g~ph~~~~-gp~p~e~f~avki~d--srIaLKsGyGKYlsinsdglvvg~qeAvG~ 123 (246)
T KOG3962|consen 49 TVAIEIDDGTYLGAMDNGLFTLGAPHDEVD-GPEPEEQFMAVKISD--SRIALKSGYGKYLSINSDGLVVGRQEAVGS 123 (246)
T ss_pred EEEEEecCceEEEEEecCceeeccCCcccc-CCCchhhEEEEEccC--ceEEecccccceeeecCCccEEEehhhcCc
Confidence 5666666677887765332 23555555 788899999999987 689999999999999999999987766654
No 61
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.76 E-value=0.52 Score=53.03 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCceEEee
Q 020265 269 LRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 269 ~~~ld~~i~wa~~~gl~VilDl 290 (328)
.+.|+++|+.|+++||+||||+
T Consensus 554 i~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 6789999999999999999996
No 62
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=90.43 E-value=0.57 Score=45.51 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQD 299 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~qn 299 (328)
+.|+..|+++|+|+||+=- + +++. . =|.+++...+.||||||||-. -.++-|
T Consensus 56 ~rDi~~l~~LgiNtIRVY~----v-dp~~-----n-----Hd~CM~~~~~aGIYvi~Dl~~-p~~sI~ 107 (314)
T PF03198_consen 56 KRDIPLLKELGINTIRVYS----V-DPSK-----N-----HDECMSAFADAGIYVILDLNT-PNGSIN 107 (314)
T ss_dssp HHHHHHHHHHT-SEEEES--------TTS------------HHHHHHHHHTT-EEEEES-B-TTBS--
T ss_pred HHhHHHHHHcCCCEEEEEE----e-CCCC-----C-----HHHHHHHHHhCCCEEEEecCC-CCcccc
Confidence 3699999999999999832 2 3211 1 367788888999999999988 433333
No 63
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=90.09 E-value=0.61 Score=46.78 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITISVT 295 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~~~p 295 (328)
+..++.||+.|++-|=++| ||-+.+...+..| .|..-+++++.+++.|||| |+-.|. ..
T Consensus 19 ~~~L~~LK~~GV~GVmvdv-WWGiVE~~~p~~y---dWs~Y~~l~~~vr~~GLk~~~vmsfH~-cG 79 (402)
T PF01373_consen 19 EAQLRALKSAGVDGVMVDV-WWGIVEGEGPQQY---DWSGYRELFEMVRDAGLKLQVVMSFHQ-CG 79 (402)
T ss_dssp HHHHHHHHHTTEEEEEEEE-EHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S--BS
T ss_pred HHHHHHHHHcCCcEEEEEe-EeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEeeec-CC
Confidence 5789999999999999999 7765443222234 5999999999999999987 667788 53
No 64
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=89.88 E-value=2 Score=36.90 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=61.5
Q ss_pred ceeeeeeecccccccccCCC-------hhhhhcccccccccceEEEeeccccEEEeec-CccEEEeecCCCCceeeecCC
Q 020265 68 QLQFKSVTVGKYLCAENGGG-------TIVVANRTSASGWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESN 139 (328)
Q Consensus 68 ~v~l~~~~~~kyv~ae~gg~-------~~l~Anr~~~~hWEtF~l~~ite~d~~lra~-n~~~v~a~~~~g~~~l~A~~~ 139 (328)
.|++|+- |+||+.+...++ .+.+. ...-.|+|....++-+.+|+. +||||+... .=+.|.++
T Consensus 7 ~V~FKg~-n~kYLry~~~~~~~~lqf~~ddI~-----dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s~----~WI~a~s~ 76 (139)
T smart00791 7 YVLFKGN-NQKYLRYQSIQQYGLLQFSADKIL-----DPLVQFEVFPTYNGLVHIKSNYTNKFWRLSH----YWITADAN 76 (139)
T ss_pred EEEEEcC-CCceEEEEeecccceeEecccccC-----CcceeEEEEEcCCCcEEEEecCCCceEccCC----CEEEecCC
Confidence 4678876 889988754211 11112 244556666666777999996 999998754 23566665
Q ss_pred CC----CCCCceEEEEccCCCceeEEEc-CCceEEeecc
Q 020265 140 TP----RSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKT 173 (328)
Q Consensus 140 ~~----g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~ 173 (328)
.| ..-.-|.-++..+ +.++||- .||.|+.-.+
T Consensus 77 d~~e~~sscTLF~Pv~~d~--~~i~lr~vq~~~~~~r~t 113 (139)
T smart00791 77 DPDENKSACTLFRPLYVEM--KKIRLLNVQLGHYTKRYT 113 (139)
T ss_pred CCccCCCcccEEeEEeccC--ceEEEEEecCCceEEeec
Confidence 55 2234577777543 6899999 7888887654
No 65
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=89.40 E-value=1 Score=49.22 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHHhcCCcEEEe-cc---------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRI-PV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRi-Pv---------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-+.+|+++|+++|=| || +|+.. +...-+|-. |..+.|+++++.|+++||+||+|+=-
T Consensus 20 ~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~-D~~~idp~l-Gt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 20 ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVV-DHSEINPEL-GGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCC-CCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5678899999999975 33 12211 111112222 57899999999999999999999833
No 66
>PLN02877 alpha-amylase/limit dextrinase
Probab=89.07 E-value=0.93 Score=50.29 Aligned_cols=22 Identities=9% Similarity=-0.020 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCceEEee
Q 020265 269 LRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 269 ~~~ld~~i~wa~~~gl~VilDl 290 (328)
...++++|+.|+++||+||+|+
T Consensus 465 I~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4569999999999999999997
No 67
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=88.88 E-value=1.1 Score=49.12 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcEEEeccc----------cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIPVG----------WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~----------yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-+.+|+++|+++|=|+=- |+.. +...-+|.. |..+.++++++.|+++||+||+|+
T Consensus 24 ~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~-D~~~idp~l-Gt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 24 ELVPYFADLGVSHLYLSPILAARPGSTHGYDVV-DHTRINPEL-GGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcC-CCCCcCCCC-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4577899999999985432 2211 111112322 578999999999999999999998
No 68
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=88.88 E-value=0.56 Score=44.61 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.|++.|+++|+|+||+-- . |.. .+.+++|.++||.|+.++-.
T Consensus 39 ~~d~~l~k~~G~N~iR~~h------~--p~~----------~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 39 ERDLELMKEMGFNAIRTHH------Y--PPS----------PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHHTT-SEEEETT------S----S----------HHHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHHhcCcceEEccc------c--cCc----------HHHHHHHhhcCCEEEEeccc
Confidence 4789999999999999821 1 111 35678999999999998744
No 69
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=88.70 E-value=2.7 Score=33.38 Aligned_cols=71 Identities=11% Similarity=0.289 Sum_probs=50.9
Q ss_pred cceEEEeec--cccEEEeec-CccEEEeecCCC---CceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeecc
Q 020265 101 ETFKLWRIN--ETNFHFRVF-NKQFIGLDTNGN---GIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKT 173 (328)
Q Consensus 101 EtF~l~~it--e~d~~lra~-n~~~v~a~~~~g---~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~ 173 (328)
..|++..+. ++.+.|++. .|+++.++. ++ +..++.....-.....|.++..++| .+.|+. ..|++|.+.+
T Consensus 3 Q~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~-~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g--~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 3 QQWTFTPVGDSDGYYKIRNVNSGKYLDVAG-GSTANGTNVQQWTCNGNDNQQWKIEPVGDG--YYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp GEEEEEEEETTTTEEEEEETTTTEEEEEGC-TTCSTTEBEEEEESSSSGGGEEEEEESTTS--EEEEEETSTTEEEEEGG
T ss_pred CEEEEEEecCCCCEEEEEECCCCCEEEeCC-CCcCCCcEEEEecCCCCcCcEEEEEEecCC--eEEEEECCCCcEEEECC
Confidence 356777765 677999985 899999986 32 1234433333377899999998864 599999 6789998865
Q ss_pred c
Q 020265 174 E 174 (328)
Q Consensus 174 ~ 174 (328)
+
T Consensus 80 ~ 80 (105)
T PF14200_consen 80 G 80 (105)
T ss_dssp G
T ss_pred C
Confidence 4
No 70
>PLN02801 beta-amylase
Probab=88.30 E-value=1.6 Score=45.02 Aligned_cols=60 Identities=18% Similarity=0.342 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITISVTT 296 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~~~pG 296 (328)
+..++.||+.|++-|=++| ||-+.....+.-| .|..-+++++.+++.|||+ |+..|. .-|
T Consensus 40 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq-CGG 101 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDV-WWGIVESKGPKQY---DWSAYRSLFELVQSFGLKIQAIMSFHQ-CGG 101 (517)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcc---CcHHHHHHHHHHHHcCCeEEEEEEecc-cCC
Confidence 3678899999999999999 7754332222334 5999999999999999986 788887 533
No 71
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=88.11 E-value=0.97 Score=52.86 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCcEEEec-c---------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIP-V---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiP-v---------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-+.+|+++|+++|=|. | +|+.. +...-+|-. |..+-|+++++.|+++||+||||+
T Consensus 762 ~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~-D~~~idp~l-G~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 762 AILPYLAALGISHVYASPILKARPGSTHGYDIV-DHSQINPEI-GGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCC-CCCccCccc-CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45678999999999753 2 12211 111112322 578999999999999999999999
No 72
>PLN02705 beta-amylase
Probab=87.73 E-value=1.5 Score=46.13 Aligned_cols=60 Identities=12% Similarity=0.214 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCc--eEEeeCCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP--VPSDITISVTT 296 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~--VilDlH~~~pG 296 (328)
+..++.||+.|++-|=++| ||-+.....+.-| .|..-.++++.+++.||| ||+.+|. .-|
T Consensus 271 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~~P~~Y---dWsgY~~L~~mvr~~GLKlqvVmSFHq-CGG 332 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDC-WWGIVEGWNPQKY---VWSGYRELFNIIREFKLKLQVVMAFHE-YGG 332 (681)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeEeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEeec-cCC
Confidence 4678899999999999999 8855333222334 599999999999999998 5788887 533
No 73
>PLN02161 beta-amylase
Probab=87.40 E-value=1.9 Score=44.44 Aligned_cols=57 Identities=14% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~ 292 (328)
+..++.||+.|++-|=++| ||-+.+...+..| .|..-+++++.+++.|||+ |+..|.
T Consensus 120 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 178 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEV-WWGIVERFSPLEF---KWSLYEELFRLISEAGLKLHVALCFHS 178 (531)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4679999999999999999 8854333222334 5999999999999999985 677787
No 74
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=86.76 E-value=2.1 Score=36.72 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=45.4
Q ss_pred cEEEeecCccEEEeecCCCCceeeecCCCCCC-CCceEEEEccCCCceeEEEc-CCceEEeec
Q 020265 112 NFHFRVFNKQFIGLDTNGNGIDIVAESNTPRS-SETFEIVRNSNDLSRVRIKA-PNGFFLQAK 172 (328)
Q Consensus 112 d~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~-wE~F~~~~~~~~~~~v~lra-~nG~~v~a~ 172 (328)
-++||+.|++|++...-++-+-++..++.++. --+|+++.+.|| .|+||. .+|||=...
T Consensus 7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg--~V~ik~~~~nKfWr~s 67 (139)
T smart00791 7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNG--LVHIKSNYTNKFWRLS 67 (139)
T ss_pred EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEEcCCC--cEEEEecCCCceEccC
Confidence 36899999999998762334567777777665 678999998764 799999 788887665
No 75
>PLN02803 beta-amylase
Probab=86.56 E-value=2 Score=44.52 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~ 292 (328)
+..++.||+.|++-|=++| ||-+.....+.-| .|..-+++++.+++.|||| |+..|.
T Consensus 110 ~~~L~~LK~~GVdGVmvDV-WWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKlq~vmSFHq 168 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDA-WWGLVEKDGPMKY---NWEGYAELVQMVQKHGLKLQVVMSFHQ 168 (548)
T ss_pred HHHHHHHHHcCCCEEEEEe-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 3578899999999999999 8855333222334 5999999999999999985 677887
No 76
>PLN00197 beta-amylase; Provisional
Probab=85.83 E-value=2.3 Score=44.32 Aligned_cols=60 Identities=13% Similarity=0.308 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITISVTT 296 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~~~pG 296 (328)
+..++.||+.|++-|=++| ||-+.....+..| .|..-.++++.+++.|||| |+..|. .-|
T Consensus 130 ~~~L~~LK~~GVdGVmvDv-WWGiVE~~~p~~Y---dWsgY~~L~~mvr~~GLKlq~VmSFHq-CGG 191 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDV-WWGLVERESPGVY---NWGGYNELLEMAKRHGLKVQAVMSFHQ-CGG 191 (573)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeccCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc-cCC
Confidence 3678899999999999999 8855333222334 5999999999999999985 677887 533
No 77
>PLN02905 beta-amylase
Probab=84.96 E-value=2.6 Score=44.58 Aligned_cols=57 Identities=11% Similarity=0.326 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCce--EEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPV--PSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~V--ilDlH~ 292 (328)
+..++.||+.|++-|=++| ||-+.....+.-| .|..-.++++.+++.|||+ |+-+|.
T Consensus 289 ~a~L~aLK~aGVdGVmvDV-WWGiVE~~gP~~Y---dWsgY~~L~~mvr~~GLKlqvVMSFHq 347 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDC-WWGIVEAHAPQEY---NWNGYKRLFQMVRELKLKLQVVMSFHE 347 (702)
T ss_pred HHHHHHHHHcCCCEEEEee-eeeeeecCCCCcC---CcHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 4678899999999999999 8855333222334 5999999999999999985 677887
No 78
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=84.63 E-value=1.4 Score=43.44 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCC---CCCCCccccHHHHHHHHHHHHhCCCc-eEEee-CCCCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFP-VPSDI-TISVT 295 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~-VilDl-H~~~p 295 (328)
.++.+= .-+|++.++.+++.|+|.|=|++ ..+.+.. -..+ ...+.+.+++++++++|+. |-+|+ -+ .|
T Consensus 93 tiE~nP-~~lt~e~l~~lk~~G~nrisiGv--QS~~d~vL~~l~R~---~~~~~~~~ai~~lr~~G~~~v~~dlI~G-lP 165 (353)
T PRK05904 93 TIECNP-ELITQSQINLLKKNKVNRISLGV--QSMNNNILKQLNRT---HTIQDSKEAINLLHKNGIYNISCDFLYC-LP 165 (353)
T ss_pred EEEecc-CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHcCCC---CCHHHHHHHHHHHHHcCCCcEEEEEeec-CC
Confidence 344443 45799999999999999766666 3221110 0111 2578888999999999997 88994 56 78
Q ss_pred C
Q 020265 296 T 296 (328)
Q Consensus 296 G 296 (328)
|
T Consensus 166 g 166 (353)
T PRK05904 166 I 166 (353)
T ss_pred C
Confidence 6
No 79
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=84.27 E-value=1.7 Score=42.69 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
.++.+= ..+|++.++.+++.|+|.|-|-| ..+.+.. -.-. .....+.+.++++.++++|+. |-+|+--..||-
T Consensus 90 tie~np-~~lt~e~l~~l~~~Gv~risiGv--qS~~~~~-l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 90 TTEANP-ELITAEWCKGLKGAGINRLSLGV--QSFRDDK-LLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred EEEeCC-CCCCHHHHHHHHHcCCCEEEEec--ccCChHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 344443 45799999999999999655555 3322110 0000 113578899999999999996 779976546664
No 80
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=84.13 E-value=1.4 Score=44.48 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=46.5
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceE-Eee-CCCCCCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVP-SDI-TISVTTS 297 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~Vi-lDl-H~~~pG~ 297 (328)
++.+= ..+|++.++.+++.|+|.|-|.| ..+.+..-..--.....+.+.++++.++++|+.+| +|| -+ .||-
T Consensus 132 iE~~P-~~lt~e~l~~l~~~G~~rvslGv--QS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~G-lP~q 205 (430)
T PRK08208 132 VETSP-ATTTAEKLALLAARGVNRLSIGV--QSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYG-IPGQ 205 (430)
T ss_pred EEeCc-CcCCHHHHHHHHHcCCCEEEEec--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecC-CCCC
Confidence 34443 45799999999999999666665 33211100000001257889999999999999864 885 45 7763
No 81
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=83.96 E-value=2.6 Score=40.36 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHHhcCCcEEEeccc-ccc-ccCC--CCCCCC-------------ccccHHHHHHHHHHHHhCCCceE-EeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVG-WWM-ASDP--TPPAPY-------------VGGSLRALDNAFTWAGYAFFPVP-SDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~-yw~-~~~~--~~~~p~-------------~~~~~~~ld~~i~wa~~~gl~Vi-lDlH~ 292 (328)
.++..++.|||.||+=+- .+. ...+ .+..|+ -...|++||+.|+.|.++||.+- |=+|+
T Consensus 35 yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg 111 (289)
T PF13204_consen 35 YLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWG 111 (289)
T ss_dssp HHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS-H
T ss_pred HHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 467788999999997663 211 1000 111121 12369999999999999999994 45674
No 82
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=83.96 E-value=3.6 Score=35.98 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=49.8
Q ss_pred ccccceEEEe--eccccEEEeec-CccEEEeecCCCCceeeecCCCCC-----CCCc-eEEEEccC-CCceeEEEc-CCc
Q 020265 98 SGWETFKLWR--INETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPR-----SSET-FEIVRNSN-DLSRVRIKA-PNG 166 (328)
Q Consensus 98 ~hWEtF~l~~--ite~d~~lra~-n~~~v~a~~~~g~~~l~A~~~~~g-----~wE~-F~~~~~~~-~~~~v~lra-~nG 166 (328)
..+-.|+++. ..++.+.+|.. ++|||+... .+.-=+.|.++.|. ..+| |.-++.++ +...|+||. .||
T Consensus 40 dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s-~n~~WI~ada~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~ 118 (153)
T PF07468_consen 40 DPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSS-PNDYWIWADADDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNG 118 (153)
T ss_dssp -CCG-EEEEE-SSTTT-EEEEETTTTEEEEESC-CC--BEEEEESSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTT
T ss_pred CCceeEEEEEcccCCCeEEEEeccCCceeEeCC-CCCcEEEecCCCcccccCCCCceEEEEEEecCCCccEEEEEecCCc
Confidence 4677888888 66788999996 999999744 21124556555444 2566 99887642 336899999 799
Q ss_pred eEEeec
Q 020265 167 FFLQAK 172 (328)
Q Consensus 167 ~~v~a~ 172 (328)
.|.+-.
T Consensus 119 ~~~~r~ 124 (153)
T PF07468_consen 119 HFCKRL 124 (153)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888754
No 83
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=82.75 E-value=3.6 Score=34.94 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCcEEEeccc---cccccCC--CCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIPVG---WWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~---yw~~~~~--~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-.+.+++.|+|+|-|-.+ -|.+... -+..|+.. .+.|.++|+.|++.||+|++=+
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEE
Confidence 4467889999999999663 2333221 22356654 6999999999999999999743
No 84
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=82.36 E-value=2.2 Score=41.88 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=38.2
Q ss_pred cHHHHHH---HHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKF---IAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~---ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++|.++ +++.||..|=-.+. .+++.....++++++++..|.++||+||+|+-.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~--------~~~~~~~~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLL--------IPEEDAELYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred chhHHHHHHHHHHcCccceeeecc--------cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 3445554 46779887644432 122332347899999999999999999999876
No 85
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=82.08 E-value=2.2 Score=44.64 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCcEEEecc---------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv---------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-.++|+++|+++|=||= +||. .+...-.|= =|..+.++.+|.++++.||++|+|+=.
T Consensus 44 ~kldyi~~lG~taiWisP~~~s~~~~~GY~~-~d~~~l~p~-fGt~edf~~Li~~~h~~gi~ii~D~vi 110 (545)
T KOG0471|consen 44 SKLDYIKELGFTAIWLSPFTKSSKPDFGYDA-SDLEQLRPR-FGTEEDFKELILAMHKLGIKIIADLVI 110 (545)
T ss_pred hhhhHHHhcCCceEEeCCCcCCCHHHhccCc-cchhhhccc-ccHHHHHHHHHHHHhhcceEEEEeecc
Confidence 348899999999998863 4553 121111121 157899999999999999999999844
No 86
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=81.31 E-value=2.3 Score=41.99 Aligned_cols=66 Identities=17% Similarity=-0.002 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEee-CCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDl-H~~~pG~ 297 (328)
..+|++.++.+++.|+|.|-|.| ..+.+.. -.-+ .....+.+.++++.++++|+. |.+|| -+ .||-
T Consensus 104 ~~i~~e~l~~l~~~G~~rvslGv--QS~~~~~-L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~G-lPgq 172 (375)
T PRK05628 104 ESTSPEFFAALRAAGFTRVSLGM--QSAAPHV-LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYG-TPGE 172 (375)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEecc-CCCC
Confidence 45899999999999999777776 2221100 0000 012578888999999999999 99996 45 6754
No 87
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=80.62 E-value=2.1 Score=43.52 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=46.8
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEee-CCCCCCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDI-TISVTTS 297 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDl-H~~~pG~ 297 (328)
++.+= ..+|++.++.+++.|+|.|- ||-..+.+.. -... .....+.+.+++++++++|+. |-+|| -+ .||-
T Consensus 143 ie~~p-~~lt~e~l~~L~~~G~~rvs--iGvQS~~~~v-l~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~G-lPgq 216 (453)
T PRK13347 143 VEIDP-RTVTAEMLQALAALGFNRAS--FGVQDFDPQV-QKAINRIQPEEMVARAVELLRAAGFESINFDLIYG-LPHQ 216 (453)
T ss_pred EEecc-ccCCHHHHHHHHHcCCCEEE--ECCCCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEe-CCCC
Confidence 34443 45799999999999999554 4443332110 0001 012578899999999999997 88886 45 7763
No 88
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=80.32 E-value=4.3 Score=42.12 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCC--CCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCCCCCC-CCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPP--APYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTI-MGGPV 307 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~--~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~qn~~~-~sG~~ 307 (328)
++|++.|+++|+++.|+.|.|--+. |... ..--+.++++-..+|+...++||..++-|.. --=.|--.+ +.|-+
T Consensus 94 keDv~Lmk~lgv~afRFSIsWSRIl-P~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDlPq~LeDeYgGwL 170 (524)
T KOG0626|consen 94 KEDVKLMKELGVDAFRFSISWSRIL-PNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDLPQALEDEYGGWL 170 (524)
T ss_pred HHHHHHHHHcCCCeEEEEeehHhhC-CCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCCCHHHHHHhcccc
Confidence 5899999999999999999986554 2211 1122347999999999999999999999865 433444444 45543
No 89
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=80.22 E-value=9.6 Score=31.89 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=45.9
Q ss_pred ecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeeccceeEeecc
Q 020265 117 VFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADY 181 (328)
Q Consensus 117 a~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~~~~l~A~~ 181 (328)
..++.|+.+.. +|.+.++.+.......|++...+. +.|.||+ ..++||+.+.-|.|.+.-
T Consensus 5 ~~~~~~L~I~~---dG~V~Gt~~~~~~~s~l~~~s~~~--g~v~i~~v~s~~YLCmn~~G~ly~s~ 65 (123)
T cd00058 5 CRTGFHLQILP---DGTVDGTRDDSSSYTILERIAVAV--GVVSIKGVASCRYLCMNKCGKLYGSK 65 (123)
T ss_pred EcCCeEEEEcC---CCcEecccCCCCCCceEEEEECCC--CEEEEEEcccceEEEECCCCCEEECC
Confidence 34588888876 556777777666778888877653 6899999 699999999877776543
No 90
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=79.43 E-value=11 Score=31.66 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=46.9
Q ss_pred EEEeecCccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeeccceeEeecc
Q 020265 113 FHFRVFNKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTADY 181 (328)
Q Consensus 113 ~~lra~n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~~~~l~A~~ 181 (328)
.+|-..++.|+.+.. ++.+..+.+.......|++...+. +.|.||+ ..++||+.+.-|.|.+..
T Consensus 5 ~~Ly~~~~~~L~I~~---~G~V~Gt~~~~~~~~ile~~s~~~--g~V~ik~~~s~~YLCmn~~G~ly~s~ 69 (126)
T smart00442 5 RQLYCRNGQHLQILP---DGTVDGTRDESSSFTILEIIAVAV--GVVAIKGVASCRYLCMNKCGKLYGSK 69 (126)
T ss_pred EEEEeCCCeEEEEcC---CceEecccCCCCcceEEEEEeccC--CEEEEEEcccceEEEECCCCCEEEcc
Confidence 355556778998876 456777776666667777766553 5899999 689999999888777543
No 91
>PRK05660 HemN family oxidoreductase; Provisional
Probab=79.27 E-value=2.9 Score=41.48 Aligned_cols=73 Identities=16% Similarity=0.030 Sum_probs=49.1
Q ss_pred HHHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCce-EEeeCCCCCC
Q 020265 220 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPV-PSDITISVTT 296 (328)
Q Consensus 220 ~~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~V-ilDlH~~~pG 296 (328)
-.++.+- ..++++.++.+++.|+| ||-++-..+.+.. -.-. .....+.+.++++.+++.|+.. -+||=-..||
T Consensus 96 it~e~np-~~l~~e~l~~Lk~~Gv~--risiGvqS~~~~~-L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpg 170 (378)
T PRK05660 96 ITMEANP-GTVEADRFVGYQRAGVN--RISIGVQSFSEEK-LKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPD 170 (378)
T ss_pred EEEEeCc-CcCCHHHHHHHHHcCCC--EEEeccCcCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 3445543 45799999999999999 6666655442210 0000 0126788999999999999975 5888664777
No 92
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types. Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.
Probab=78.99 E-value=13 Score=32.50 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=40.9
Q ss_pred EEEeecCccEEEeecCCC-C--ceeeecCCCCC-CCCceEEEE--ccCCCceeEEEc-CCceEEeeccce
Q 020265 113 FHFRVFNKQFIGLDTNGN-G--IDIVAESNTPR-SSETFEIVR--NSNDLSRVRIKA-PNGFFLQAKTEE 175 (328)
Q Consensus 113 ~~lra~n~~~v~a~~~~g-~--~~l~A~~~~~g-~wE~F~~~~--~~~~~~~v~lra-~nG~~v~a~~~~ 175 (328)
+.++..|+||+++.. ++ . +-|+...+.|+ ++-+|+++. ..| +.|+||. .++||-...+.+
T Consensus 8 V~fkg~N~kYLry~~-e~~~~~~~LqF~~edi~dP~v~fev~~~~~~d--G~V~Ir~~y~nKfWrr~s~n 74 (153)
T PF07468_consen 8 VAFKGDNGKYLRYRT-EDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHD--GLVHIRCCYNNKFWRRSSPN 74 (153)
T ss_dssp EEEETTTS-EEEEEE-SSCTTCCEEEEEESSTT-CCG-EEEEE-SSTT--T-EEEEETTTTEEEEESCCC
T ss_pred EEEEcCCCcEEEEEe-cccccceeEEecCCcCCCCceeEEEEEcccCC--CeEEEEeccCCceeEeCCCC
Confidence 466777999999875 21 2 45777766555 599999999 554 5799999 788888764433
No 93
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=77.72 E-value=4.8 Score=42.67 Aligned_cols=69 Identities=23% Similarity=0.145 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCCCCCCCCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGG 305 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~qn~~~~sG 305 (328)
++-++.+++.|+|.|--.|.|- .-.+.+. .|+=.+---|-+.|..|++.||+|+|=+= |==+..+++.|
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~Hep~~g-~y~FsG~~DlvkFikl~~~~GLyv~LRiG---PyIcaEw~~GG 120 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-LHEPSPG-KYDFSGRYDLVKFIKLIHKAGLYVILRIG---PYICAEWNFGG 120 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-cccCCCC-cccccchhHHHHHHHHHHHCCeEEEecCC---CeEEecccCCC
Confidence 3557788999999999999665 4344333 23322344466779999999999998542 22344555555
No 94
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=77.19 E-value=4.7 Score=39.49 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=47.5
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCc-eEEeeCCCCCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP-VPSDITISVTT 296 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG 296 (328)
++.+- .-+|++.++.+++.|+|.|-|.| ..+.+.. -... ....+.+.++++.++++|+. |-+||=-..||
T Consensus 89 iE~nP-~~~~~e~l~~l~~~GvnRiSiGv--QS~~~~~--L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 89 TEANP-NSATKAWLKGMKNLGVNRISFGV--QSFNEDK--LKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred EEeCC-CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH--HHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 45554 45789999999999999555554 4332210 0011 12578899999999999996 66898654677
No 95
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=76.33 E-value=4.6 Score=39.67 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
..+|++.++.+++.|+|.|-|.| ..+.+.. -.-. .....+.+.++++.++++|+. |-+|+=-..||-
T Consensus 95 ~~~t~e~l~~l~~~G~~rvsiGv--qS~~d~~-L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 95 GTFTEEKLKILKSMGVNRLSIGL--QAWQNSL-LKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CcCCHHHHHHHHHcCCCEEEEEC--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 46899999999999999555554 4332110 0000 012578888999999999997 778965437764
No 96
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=75.70 E-value=4.1 Score=40.74 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCCC---CCCCCccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
-+|++.++.+++.|+| ||-+|-..+.+.. -+- ....+.+.++++.+++.|+. |-+||=-..||-
T Consensus 112 ~lt~e~l~~l~~~Gvn--rislGvQS~~d~~L~~l~R---~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 112 TFDLEQLQGYRSLGVN--RVSLGVQAFQDELLALCGR---SHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred cCCHHHHHHHHHCCCC--EEEEEcccCCHHHHHHhCC---CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 3689999999999999 5555554442210 011 12578889999999999999 889964328873
No 97
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=74.96 E-value=8.5 Score=41.16 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCcEEEecccccc----------ccCC----CCC--CCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWM----------ASDP----TPP--APYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~----------~~~~----~~~--~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.-+++|++.|++.|=+.=-|-. ..|. .+. +|- -|..+.++++++.|+++||+||+||=-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~-~GT~eDf~~L~~~Ah~~G~~vi~DlVp 152 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPL-LGSEEELIQLSRMAAAHNAITIDDIIP 152 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcc-cCCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35688899999999987443322 0010 011 221 157999999999999999999999955
No 98
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=74.66 E-value=4.8 Score=39.87 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=50.6
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCC---CCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPT---PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~---~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
.++.+-+ .++++.++.+++.|+| ||.+|-..+.+.. -+-+ ...+.+.++++++++.++.|.+||=-.+||-
T Consensus 94 t~E~~P~-~i~~e~L~~l~~~Gvn--rislGvQS~~d~vL~~l~R~---~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 94 TLEANPT-SVEAGRFRGYRAAGVN--RVSLGVQALNDADLRFLGRL---HSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred EEEECcC-cCCHHHHHHHHHcCCC--EEEEecccCCHHHHHHcCCC---CCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 4566654 4789999999999999 6667655543210 0111 2567788899999999999999985437765
Q ss_pred C
Q 020265 298 Q 298 (328)
Q Consensus 298 q 298 (328)
.
T Consensus 168 t 168 (380)
T PRK09057 168 T 168 (380)
T ss_pred C
Confidence 3
No 99
>PRK10150 beta-D-glucuronidase; Provisional
Probab=74.50 E-value=4.6 Score=42.44 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+.|++.||++|+|+||+.- | |.. .++++.|.++||.|+-++
T Consensus 316 ~~d~~l~K~~G~N~vR~sh-~-------p~~----------~~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSH-Y-------PYS----------EEMLDLADRHGIVVIDET 356 (604)
T ss_pred HHHHHHHHHCCCCEEEecc-C-------CCC----------HHHHHHHHhcCcEEEEec
Confidence 4688999999999999931 1 111 256889999999999776
No 100
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=74.45 E-value=3.8 Score=41.65 Aligned_cols=73 Identities=8% Similarity=-0.057 Sum_probs=47.3
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCC-CceEEeeCCCCCCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAF-FPVPSDITISVTTS 297 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~g-l~VilDlH~~~pG~ 297 (328)
.++.+=+ .+|++.++.+++.|+|.|-|-| ..+.+..- .-. .....+.+.++++.++++| +.|.+||=-..||-
T Consensus 153 tiE~~p~-~~t~e~l~~l~~aGvnRiSiGV--QSf~d~vL-k~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 153 TLEGRIN-GFDDEKADAALDAGANRFSIGV--QSFNTQVR-RRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred EEEeCcC-cCCHHHHHHHHHcCCCEEEecC--CcCCHHHH-HHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 3444433 4689999999999999555544 43321100 000 0124678889999999999 88999985327765
No 101
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=74.37 E-value=4.6 Score=39.10 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=48.1
Q ss_pred ccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccc-cHHHHHHHHHHHHhCCCceEEee-CCCCCC
Q 020265 226 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGG-SLRALDNAFTWAGYAFFPVPSDI-TISVTT 296 (328)
Q Consensus 226 ~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~-~~~~ld~~i~wa~~~gl~VilDl-H~~~pG 296 (328)
+..+++++.++.|++.|++ +||-+|...+.+..-..-.-.+ ..+.+.++++.++++||.|..++ -+ .||
T Consensus 111 rpd~i~~e~L~~l~~aG~~-~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G-~P~ 181 (313)
T TIGR01210 111 RPEFIDEEKLEELRKIGVN-VEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFK-PPF 181 (313)
T ss_pred CCCcCCHHHHHHHHHcCCC-EEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEec-CCC
Confidence 4567899999999999987 5777877654321000001011 57888899999999999998884 44 665
No 102
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=73.77 E-value=3.9 Score=42.16 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=48.2
Q ss_pred hhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCC-ceEEeeCCCCCCC
Q 020265 223 RKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFF-PVPSDITISVTTS 297 (328)
Q Consensus 223 ~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl-~VilDlH~~~pG~ 297 (328)
+..+-..+|++-++.|++.|++ ||-|+-..+.+.. -.-. .....+.+.++++.|+++|+ .|-+||=...||-
T Consensus 260 E~grPd~it~e~L~~Lk~~Gv~--RISIGvQS~~d~v-Lk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 260 EAGRPDTITEEKLEVLKKYGVD--RISINPQTMNDET-LKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred EcCCCCCCCHHHHHHHHhcCCC--eEEEcCCcCCHHH-HHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 4434456899999999999999 5555544332110 0000 11368889999999999999 7878975536653
No 103
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=73.00 E-value=3.5 Score=44.24 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=43.1
Q ss_pred CcHHHHHHHHhcCCcEEE-eccc----cc-ccc-CC----CCCCCCc----cccHHHHHHHHHHHHhCCCceEEee---C
Q 020265 230 IVEDDFKFIAGNGLNAVR-IPVG----WW-MAS-DP----TPPAPYV----GGSLRALDNAFTWAGYAFFPVPSDI---T 291 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VR-iPv~----yw-~~~-~~----~~~~p~~----~~~~~~ld~~i~wa~~~gl~VilDl---H 291 (328)
+||+++..|+..|+|+|- +||- |. .+. .+ .|..-|- ......++++|+.|+..||-||||+ |
T Consensus 256 FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sH 335 (757)
T KOG0470|consen 256 FTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSH 335 (757)
T ss_pred hhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhh
Confidence 478889999999999999 5662 22 111 00 0111110 1236689999999999999999997 6
Q ss_pred C
Q 020265 292 I 292 (328)
Q Consensus 292 ~ 292 (328)
+
T Consensus 336 a 336 (757)
T KOG0470|consen 336 A 336 (757)
T ss_pred c
Confidence 6
No 104
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=72.80 E-value=4.3 Score=40.24 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=33.1
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++.+++.||..|=..+.- ++. ++ ....+++++++++|+++||+||+|+..
T Consensus 19 yi~~a~~~Gf~~iFTSL~i-----pe~-~~--~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 19 YIEKAAKYGFKRIFTSLHI-----PED-DP--EDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp HHHHHHCTTEEEEEEEE-----------------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred HHHHHHHCCCCEEECCCCc-----CCC-CH--HHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 3555678898877554421 111 11 236899999999999999999999987
No 105
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=72.57 E-value=5.2 Score=41.67 Aligned_cols=69 Identities=16% Similarity=0.098 Sum_probs=48.0
Q ss_pred ccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCC
Q 020265 226 WSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTT 296 (328)
Q Consensus 226 ~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG 296 (328)
+-.+++++.++.|++.|+| ||-+|-..+.+..-..--.....+.+.+++++++++|++|.+||=-.+||
T Consensus 200 RPD~i~~e~L~~L~~~G~~--rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 200 RPDYCREEHIDRMLKLGAT--RVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred cCCcCCHHHHHHHHHcCCC--EEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 4568999999999999997 66676554422100000001257889999999999999988887554666
No 106
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=72.25 E-value=5 Score=40.73 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=46.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCC-ceEEeeCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFF-PVPSDITISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl-~VilDlH~~~pG~ 297 (328)
.-+|++.++.|++.|+|.|-|.+- .+.+.. -.-+ .....+.+.++++.++++|+ .|-+||=-..||-
T Consensus 147 ~~lt~e~l~~l~~aG~~risiGvq--S~~~~~-L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 147 RELDLEMLDALRELGFNRLSLGVQ--DFDPEV-QKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred CcCCHHHHHHHHHcCCCEEEECCC--CCCHHH-HHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 357999999999999997777762 221100 0000 01257889999999999999 7889976536764
No 107
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.18 E-value=6.3 Score=38.94 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=46.6
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
++.+- ..+|++.++.+++.|+|.|-|-| ..+.+.. -.-. .....+.+.++++.+++.|+. |-+||=-..||-
T Consensus 94 ~E~~P-~~~~~~~l~~l~~~G~nrislGv--QS~~~~~-L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 94 LEANP-ENLSESYIRALALTGINRISIGV--QTFDDPL-LKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred EEeCC-CCCCHHHHHHHHHCCCCEEEEcc--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 34444 34689999999999999555544 3332110 0000 012467888999999999996 889964437774
No 108
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=71.02 E-value=4.7 Score=40.93 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
..++++.++.|++.|+|.|-|-+ ..+.+.. -+-+ .....+.+.++++.++++|+. |-+|+--..||-
T Consensus 147 ~~l~~e~l~~lk~~G~~risiGv--qS~~~~~-l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 147 RYITKDVIDALRDEGFNRLSFGV--QDFNKEV-QQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred CcCCHHHHHHHHHcCCCEEEEcC--CCCCHHH-HHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 45799999999999999666555 3221100 0000 012578889999999999996 778976436763
No 109
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=70.88 E-value=6.4 Score=38.77 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
..++++.++.+++.|+|.|-|.+ ..+.+.. -+-. .....+.+.+++++++++|+. |-+|+=-..||-
T Consensus 96 ~~l~~e~l~~l~~~G~~rvsiGv--qS~~~~~-l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 96 GDLTKEKLQVLKDSGVNRISLGV--QTFNDEL-LKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCCHHHHHHHHHcCCCEEEEec--ccCCHHH-HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 45789999999999999766666 2221100 0000 012578899999999999997 678874327764
No 110
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=69.94 E-value=6.4 Score=43.15 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.|++.|+++|+|+||.- +|. .. ++..++|.++||.||-|.=.
T Consensus 324 ~~dl~lmk~~n~N~vRts-HyP-------~~----------~~~ydLcDelGllV~~Ea~~ 366 (808)
T COG3250 324 ERDLKLMKEANMNSVRTS-HYP-------NS----------EEFYDLCDELGLLVIDEAMI 366 (808)
T ss_pred HHHHHHHHHcCCCEEEec-CCC-------CC----------HHHHHHHHHhCcEEEEecch
Confidence 578999999999999987 332 11 35678999999999998644
No 111
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=69.83 E-value=5.1 Score=44.38 Aligned_cols=28 Identities=7% Similarity=0.054 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEee---CCCCCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI---TISVTT 296 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl---H~~~pG 296 (328)
....++++|+.|+++||+||+|+ |. .++
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt-~~~ 432 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHT-NAS 432 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccc-ccc
Confidence 36789999999999999999998 66 443
No 112
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=69.60 E-value=7.5 Score=43.81 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+.|++.++++|+|+||+. +. |..| +..++|.++||+|+-+.
T Consensus 374 ~~di~lmK~~g~NaVR~s----Hy----P~~p----------~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 374 VQDILLMKQHNFNAVRCS----HY----PNHP----------LWYELCDRYGLYVVDEA 414 (1027)
T ss_pred HHHHHHHHHCCCCEEEec----CC----CCCH----------HHHHHHHHcCCEEEEec
Confidence 358999999999999993 11 1222 45789999999999885
No 113
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=67.13 E-value=8.9 Score=38.30 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=50.2
Q ss_pred HHHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 220 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 220 ~~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
-.++.+-. -+|++.++.+++.|+| ||.+|-..+.+..-..--.....+...++++.|++.+..|-+||=-.+||-
T Consensus 100 itiE~nP~-~~~~e~l~~l~~~Gvn--RiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 100 ITLETNPT-SFETEKFKAFKLAGIN--RVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred EEEEeCCC-cCCHHHHHHHHHCCCC--EEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 34555554 4789999999999998 677765554321000000012567788889999999889999976547775
No 114
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=66.55 E-value=8.6 Score=43.28 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+.|++.||++|+|+||.. +. |..| +..+.|.++||+|+-+.
T Consensus 358 ~~dl~lmK~~g~NavR~s----Hy----P~~~----------~fydlcDe~GllV~dE~ 398 (1021)
T PRK10340 358 EKDIQLMKQHNINSVRTA----HY----PNDP----------RFYELCDIYGLFVMAET 398 (1021)
T ss_pred HHHHHHHHHCCCCEEEec----CC----CCCH----------HHHHHHHHCCCEEEECC
Confidence 468999999999999984 11 1222 45789999999999874
No 115
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=65.99 E-value=30 Score=28.46 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=51.2
Q ss_pred ccccceEEEeeccccEEEeec-CccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc--C-CceEEeecc
Q 020265 98 SGWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA--P-NGFFLQAKT 173 (328)
Q Consensus 98 ~hWEtF~l~~ite~d~~lra~-n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra--~-nG~~v~a~~ 173 (328)
.....|++...+.+.+.|++. .++|+|++. .|.+.+. ..+...+.|.-....++ -..+.+ . .+.||..+.
T Consensus 29 ~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~---~G~ly~~-~~~~~~C~F~e~~~~n~--y~~~~s~~~~~~~yla~~~ 102 (122)
T PF00167_consen 29 SPYSVFEIHSVGFGVVRIRGVKSCRYLCMNK---CGRLYGS-KNFNKDCVFREELLENG--YNTYESAKYGRGWYLAFNR 102 (122)
T ss_dssp STTGEEEEEEEETTEEEEEETTTTEEEEEBT---TSBEEEE-SSBTGGGEEEEEEETTS--EEEEEESTTGTTEBCEBCT
T ss_pred cceeEEEEEeccceEEEEEEecceEEEEECC---CCeEccc-cccCCCceEEEEEccCC--EEEEEeccCCccEEEEECC
Confidence 467889999998888999997 899999987 5567775 44566899986655432 344444 2 467776665
Q ss_pred ce
Q 020265 174 EE 175 (328)
Q Consensus 174 ~~ 175 (328)
.+
T Consensus 103 ~G 104 (122)
T PF00167_consen 103 RG 104 (122)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 116
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=65.11 E-value=4.8 Score=33.12 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCC-CCCCC-ccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPT-PPAPY-VGGSLRALDNAFTWAGYAFFP-VPSDITISVTT 296 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~-~~~p~-~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG 296 (328)
.+++++.++.|++.|++.|++.+..-. +. -..++ ....++.+-++++.++++|+. +++=+.. .||
T Consensus 86 ~~~~~~~l~~l~~~~~~~i~~~l~s~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~-~~~ 153 (166)
T PF04055_consen 86 TLLDEELLDELKKLGVDRIRISLESLD---EESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVG-LPG 153 (166)
T ss_dssp TTHCHHHHHHHHHTTCSEEEEEEBSSS---HHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEE-BTT
T ss_pred cchhHHHHHHHHhcCccEEecccccCC---HHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-eCC
Confidence 344489999999999999999984321 00 00111 124789999999999999998 6666666 554
No 117
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=64.57 E-value=13 Score=43.00 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCcEEEe-ccc--------cccccCCCCCCCCc---cccHHHHHHHHHHHHh-CCCceEEeeC
Q 020265 232 EDDFKFIAGNGLNAVRI-PVG--------WWMASDPTPPAPYV---GGSLRALDNAFTWAGY-AFFPVPSDIT 291 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRi-Pv~--------yw~~~~~~~~~p~~---~~~~~~ld~~i~wa~~-~gl~VilDlH 291 (328)
++.++.|++.|+|.|=+ ||- |- ..|-..-+|.. .+..+.++++|+.+++ +||+||+|+=
T Consensus 135 ~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ys-i~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 135 EPRLRVAKEKGYNMIHFTPLQELGGSNSCYS-LYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCcc-ccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 46799999999999985 331 22 11111123322 1467889999999998 5999999983
No 118
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=64.30 E-value=16 Score=35.34 Aligned_cols=53 Identities=23% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCcEEEeccccccccC---CCCCCC---Cc------cccHHHHHHHHHHHHhCCCceE
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASD---PTPPAP---YV------GGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~---~~~~~p---~~------~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
+-++.++++|||+|=+-|-.. .+ +...+| +. ..+++.|..+|+.|+++||.|.
T Consensus 23 ~~l~~l~~~~~N~V~~qVr~~--gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 23 EMLDDLKSAGFNAVFVQVRPR--GDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred HHHHHHHHcCCCEEEEEEEeC--cEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEE
Confidence 457778999999998777421 11 111222 11 1258999999999999999875
No 119
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=60.52 E-value=12 Score=37.37 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 221 VMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 221 ~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
.++.+= ..++++.++.+++.|+|. |-+|-..+.+.. -+-. .....+.+.++++++++.+..|-+||=-..||-
T Consensus 112 t~E~~p-~~~~~e~L~~l~~~Gvnr--isiGvQS~~~~~-L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 112 TLEANP-GTFEAEKFAQFRASGVNR--LSIGIQSFNDAH-LKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred EEEECC-CCCCHHHHHHHHHcCCCe--EEEecccCCHHH-HHHhCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 344443 457889999999999994 455444332110 0000 012457788899999998888999986547764
No 120
>PLN03244 alpha-amylase; Provisional
Probab=59.89 E-value=8.6 Score=42.06 Aligned_cols=24 Identities=21% Similarity=-0.010 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHhCCCceEEee
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
|..+-|+++|+.|+++||.||||+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 467899999999999999999996
No 121
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=59.57 E-value=11 Score=34.60 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++++.+++.|+..|||++.-..........--..+.++.+.++++.|+++|+.|.+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 78999999999999999995321100000000012368889999999999999999998
No 122
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.21 E-value=24 Score=33.26 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=39.4
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+..+|++...+.|+..|||.+.- ..++.+.++++.|+++|++|.+.+=.
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~--------------~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHK--------------HEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEeccc--------------ccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45688888889999999997611 14788888999999999999888766
No 123
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.91 E-value=12 Score=35.29 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=43.1
Q ss_pred CcHHHHHHHHhcCCcEEEecccc--ccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~y--w~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
...+|++...+.|+..|||.++- .+........ ....++.+.++++.|+++|++|-+.+=.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~--~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 72 CHMDDARIAVETGVDGVDLVFGTSPFLREASHGKS--ITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45689999999999999987742 2111100111 1236888999999999999999888744
No 124
>PRK08354 putative aminotransferase; Provisional
Probab=58.13 E-value=16 Score=34.65 Aligned_cols=25 Identities=8% Similarity=-0.060 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|=.-
T Consensus 135 ~~~~l~~l~~~a~~~~~~li~De~y 159 (311)
T PRK08354 135 NFKELKPLLDAVEDRNALLILDEAF 159 (311)
T ss_pred CHHHHHHHHHHhhhcCcEEEEeCcc
Confidence 5789999999999999999999754
No 125
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=57.82 E-value=20 Score=33.75 Aligned_cols=57 Identities=12% Similarity=-0.012 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEE
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPS 288 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~Vil 288 (328)
..+|++.++.|+++|++.|-+-+- - ++.-.+-.. ...++..-++++.++++||+|..
T Consensus 119 g~~~~e~l~~Lk~aG~~~v~i~~E-~---~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 119 GLLDPEQAKRLKDAGLDYYNHNLD-T---SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCS 176 (296)
T ss_pred CCCCHHHHHHHHHcCCCEEEEccc-C---CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 368999999999999999887764 1 110001111 23678888999999999999754
No 126
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=57.59 E-value=27 Score=32.89 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=54.0
Q ss_pred hHHHhhcccCCCcHHHHHHHHhcCCcEEEeccccccc-cCCCC----C-------CCCccccHHHHHHHHHHHHhCCCce
Q 020265 219 PQVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMA-SDPTP----P-------APYVGGSLRALDNAFTWAGYAFFPV 286 (328)
Q Consensus 219 ~~~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~-~~~~~----~-------~p~~~~~~~~ld~~i~wa~~~gl~V 286 (328)
...+...|..|+.++....+..-|+..+++.-+...+ .+... . .....++++.|++.++.|++.+.+|
T Consensus 137 ~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v 216 (296)
T cd00842 137 YDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKV 216 (296)
T ss_pred HHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 3456667777888777777777788777753333222 12110 0 0111348999999999999999999
Q ss_pred EEeeCCCCCCCCC
Q 020265 287 PSDITISVTTSQD 299 (328)
Q Consensus 287 ilDlH~~~pG~qn 299 (328)
+|=+|. .||...
T Consensus 217 ~I~~Hi-Pp~~~~ 228 (296)
T cd00842 217 WIIGHI-PPGVNS 228 (296)
T ss_pred EEEecc-CCCCcc
Confidence 999999 888754
No 127
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=57.58 E-value=22 Score=34.00 Aligned_cols=55 Identities=11% Similarity=-0.166 Sum_probs=34.7
Q ss_pred HHhcCCcEEEecccc-ccc-cC------CCCCCCCcc-ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 238 IAGNGLNAVRIPVGW-WMA-SD------PTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 238 ia~~G~N~VRiPv~y-w~~-~~------~~~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.+..|+..+.+|+.- -.. .. .+|.+|--. =..+.+.+++++|+++|+.||+|=.-
T Consensus 103 ~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y 166 (330)
T PRK05664 103 WRRAGHQVRELDEAEVEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAF 166 (330)
T ss_pred HHHcCCeEEEechhhHhhhhcCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCc
Confidence 345677777777631 000 00 134455210 15788999999999999999999654
No 128
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=57.02 E-value=13 Score=37.85 Aligned_cols=65 Identities=9% Similarity=-0.037 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEEee-CCCCCCC
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI-TISVTTS 297 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDl-H~~~pG~ 297 (328)
.++++.++.|++.|++.|-|.+ ....+.. -.-+. ....+.+.+++++|+++||.|..++ -+ .||-
T Consensus 284 ~~~~e~l~~l~~aG~~~v~iGi--ES~s~~~-L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiG-lPge 350 (472)
T TIGR03471 284 NVDYETLKVMKENGLRLLLVGY--ESGDQQI-LKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILG-LPGE 350 (472)
T ss_pred CCCHHHHHHHHHcCCCEEEEcC--CCCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEe-CCCC
Confidence 3789999999999999777665 2211100 00000 1146788899999999999998885 45 6664
No 129
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=55.97 E-value=14 Score=32.00 Aligned_cols=61 Identities=7% Similarity=-0.047 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++-++..+..|...|+++.+-+........+.......+.|+++++.|+++|+.+.|--|.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 3567777899999999998732111110111111225688999999999999888888777
No 130
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=55.15 E-value=28 Score=32.94 Aligned_cols=49 Identities=27% Similarity=0.135 Sum_probs=38.8
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.++|++...+.|+..|||=++-. .++.+.++++.|+++|+.|...+..
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALN--------------DVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCC--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 578899999999999999844111 2678889999999999998876654
No 131
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=55.06 E-value=20 Score=33.39 Aligned_cols=58 Identities=10% Similarity=0.031 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-++..+.+|.+.||++-. ....+. ..+.......+.|.++++.|+++|+.+.|-.|.
T Consensus 98 ~~i~~a~~lG~~~v~~~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~ 155 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAGY-DVYYEE-HDEETRRRFREGLKEAVELAARAQVTLAVEIMD 155 (279)
T ss_pred HHHHHHHHhCCCEEEecCc-ccccCc-CCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCC
Confidence 4567778999999998742 111111 011111224678889999999999999998875
No 132
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=53.52 E-value=28 Score=34.18 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccc
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVG 251 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~ 251 (328)
+.+|++.++.|++.|++.|+|.+.
T Consensus 100 ~ll~~~~~~~L~~~g~~~v~iSld 123 (378)
T PRK05301 100 VGLTEARLAALKDAGLDHIQLSFQ 123 (378)
T ss_pred ccCCHHHHHHHHHcCCCEEEEEec
Confidence 458899999999999999999985
No 133
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=52.88 E-value=27 Score=29.81 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCC-CceEEee
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAF-FPVPSDI 290 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~g-l~VilDl 290 (328)
..++++.++.|++.|++.|.|.+.-..-.......+ ...++.+.++++.++++| +.|-+.+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINR--GHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC--CCCHHHHHHHHHHHHHhCCcceEEeE
Confidence 467889999999999998888775321000000001 125688888888888888 5554433
No 134
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=52.51 E-value=30 Score=33.11 Aligned_cols=24 Identities=13% Similarity=-0.249 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+.+++++|+++++.||+|=-
T Consensus 140 s~~~~~~l~~~a~~~~~~iI~DE~ 163 (332)
T PRK06425 140 SRDSLLTISEICRKKGALLFIDEA 163 (332)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 578999999999999999999943
No 135
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=50.79 E-value=26 Score=34.93 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=41.2
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccc----ccccc-C-------C--------CCCCCCccc---cHHHHHHHHHH
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVG----WWMAS-D-------P--------TPPAPYVGG---SLRALDNAFTW 278 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~----yw~~~-~-------~--------~~~~p~~~~---~~~~ld~~i~w 278 (328)
.+..|.+| ...++-.|...|++|+. -|... + + .|.+| .| ..+.|.+++++
T Consensus 119 p~P~Y~~y-----~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NP--TGav~~~~~l~~i~~~ 191 (393)
T COG0436 119 PDPGYPSY-----EAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNP--TGAVYSKEELKAIVEL 191 (393)
T ss_pred eCCCCcCH-----HHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCC--cCcCCCHHHHHHHHHH
Confidence 34556555 44566778888888852 12110 0 0 24555 22 57999999999
Q ss_pred HHhCCCceEEee
Q 020265 279 AGYAFFPVPSDI 290 (328)
Q Consensus 279 a~~~gl~VilDl 290 (328)
|++||+.||-|=
T Consensus 192 a~~~~i~ii~DE 203 (393)
T COG0436 192 AREHDIIIISDE 203 (393)
T ss_pred HHHcCeEEEEeh
Confidence 999999999994
No 136
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=48.90 E-value=26 Score=28.79 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCCCceEEeeCCCCCCCCCC
Q 020265 272 LDNAFTWAGYAFFPVPSDITISVTTSQDL 300 (328)
Q Consensus 272 ld~~i~wa~~~gl~VilDlH~~~pG~qn~ 300 (328)
|+++++.-+++|+.|++|+-. .|.|++.
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~-~P~S~~~ 29 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRL-WPRSRKP 29 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECC-CCCCCCC
Confidence 688899999999999999999 9998854
No 137
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=48.73 E-value=49 Score=32.75 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCC--CCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~--~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
=.|.++.+.+.++|.+.||+-|+-=..-.. ...-++ .++..|-++.+.|+++++.||.|
T Consensus 158 V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~--pqltAv~~~a~aa~~~~v~VIaD 218 (343)
T TIGR01305 158 VVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGY--PQLSAVIECADAAHGLKGHIISD 218 (343)
T ss_pred ccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCc--CHHHHHHHHHHHhccCCCeEEEc
Confidence 368899999999999999999863222111 111222 27899999999999999999998
No 138
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=48.61 E-value=19 Score=33.55 Aligned_cols=58 Identities=17% Similarity=0.034 Sum_probs=39.5
Q ss_pred cHHHHHHHHhcCCcEEEecccccc--ccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~--~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.++|++...+.|++.||+.++-.. ........ ....++.+.++++.|++.|++|.+.+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~--~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKD--RAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 478999999999999999774221 11000000 12357888899999999999887544
No 139
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.30 E-value=29 Score=32.12 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-++.-+.+|++.||+| ++-...... .+.......+.|+++++.|+++||++.|-.|.
T Consensus 98 ~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~ 155 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMD 155 (284)
T ss_pred HHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecC
Confidence 44566678999999987 331111110 01111124577888999999999999988876
No 140
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=47.92 E-value=39 Score=32.79 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHhcCCcEEEecccccc--ccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~--~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
+.+|++.++.|++.|++.|+|.+.=.. ..+.... ..+.++.+-+.|+.++++|++|.|.
T Consensus 91 ~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg---~~g~f~~v~~~i~~l~~~g~~v~v~ 151 (358)
T TIGR02109 91 VGLTEARLDALADAGLDHVQLSFQGVDEALADRIAG---YKNAFEQKLAMARAVKAAGLPLTLN 151 (358)
T ss_pred ccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcC---CccHHHHHHHHHHHHHhCCCceEEE
Confidence 358889999999999999999984210 0000000 0123555555555555555555443
No 141
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=46.13 E-value=27 Score=33.14 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=43.1
Q ss_pred cHHHHHHHHhcCCcEEEeccccc--cccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWW--MASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw--~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++|++...+.|+..|+++++-. +..... ... ....++.+.+.+++|+++|++|.+.+-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s-~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNI-NCS-IAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCC-HHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 57899999999999999988522 111100 001 1236788999999999999999877765
No 142
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=45.75 E-value=28 Score=35.14 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCc-eEEeeCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFP-VPSDITISVTTS 297 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG~ 297 (328)
+.++.+-|+.+++.|+| ||.+|=+.|.+..-..--.....+....+++++++.|+. |-|||=-..||-
T Consensus 133 ~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~Q 201 (416)
T COG0635 133 GTVEAEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQ 201 (416)
T ss_pred CCCCHHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 46788999999999999 999987766321000000012467888899999998874 778973327763
No 143
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=45.41 E-value=58 Score=31.91 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=36.6
Q ss_pred cHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.+|++...+.|++.|||.++.- ..+.+.+.+++|++.|+.|.+-+=.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~--------------e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCT--------------EADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecc--------------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 56899999999999999987211 1245788888888888888776644
No 144
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.33 E-value=31 Score=32.10 Aligned_cols=58 Identities=9% Similarity=0.089 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-++..+.+|..+|+++- +....+. +.+.......+.|+++.+.|+++|+.+.|-.|.
T Consensus 103 ~~i~~a~~lG~~~i~~~~-~~~~~~~-~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~ 160 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAG-YDVYYEQ-ANNETRRRFIDGLKESVELASRASVTLAFEIMD 160 (283)
T ss_pred HHHHHHHHcCCCEEEECC-ccccccc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecC
Confidence 457778899999999863 2100011 001111123577888999999999999888885
No 145
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=43.84 E-value=29 Score=33.19 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=41.7
Q ss_pred cHHHHHHHHhcCCcEEEecccc--ccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~y--w~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+|++...+.|++.||+.++- .+..... . --....++.+.++|++|+++|++|...+-.
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~-~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNI-N-CSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHh-C-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 5789999999999999988742 2111110 0 101236888999999999999999755543
No 146
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=43.61 E-value=26 Score=34.59 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=41.8
Q ss_pred cHHHHHHHHhcCCcEEEeccc--cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~--yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++|++...+.|+..|||.++ -.+........ ....++.+.++++.|+++|++|.+.+=.
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~--~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKS--RDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 478999999999999999654 22211100000 1236788899999999999999887633
No 147
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.17 E-value=63 Score=31.65 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=36.4
Q ss_pred cHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.+|++...+.|+..|||.++.- ..+.+.+.+++|++.|+.|...+-.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~--------------e~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCT--------------EADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccc--------------hHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 56899998999999999987311 1234678889999999988766544
No 148
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=43.16 E-value=65 Score=32.83 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCcEEEec-cc-------cccccCCCCCCCC--c---cccHHHHHHHHHHH-HhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIP-VG-------WWMASDPTPPAPY--V---GGSLRALDNAFTWA-GYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiP-v~-------yw~~~~~~~~~p~--~---~~~~~~ld~~i~wa-~~~gl~VilDlH~ 292 (328)
++-|+.+++.|+|.|-++ +- .+.+.|....+|- . ...++.|.++|..+ +++||.+|.|++-
T Consensus 25 ~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~ 99 (423)
T PF14701_consen 25 EKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVVL 99 (423)
T ss_pred HHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEee
Confidence 467899999999999854 31 1222222112221 1 12588999999887 5899999999955
No 149
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.85 E-value=19 Score=29.60 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=12.6
Q ss_pred CCcHHHHHHHHhcCCcEE
Q 020265 229 YIVEDDFKFIAGNGLNAV 246 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~V 246 (328)
=|+++||+.|++.||.+|
T Consensus 14 Q~~~~d~~~la~~GfktV 31 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTV 31 (110)
T ss_dssp S--HHHHHHHHHCT--EE
T ss_pred CCCHHHHHHHHHCCCcEE
Confidence 478999999999999987
No 150
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=42.64 E-value=30 Score=34.09 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|=--
T Consensus 197 s~~~~~~l~~~a~~~~~~iI~De~Y 221 (416)
T PRK09440 197 TDEELEKLDALARQHNIPLLIDNAY 221 (416)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeCCc
Confidence 5789999999999999999999644
No 151
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=42.18 E-value=29 Score=35.35 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++++.||.|=.-
T Consensus 209 s~e~l~~ll~~a~~~~~~iI~DE~Y 233 (468)
T PLN02450 209 TRTELNLLVDFITAKNIHLISDEIY 233 (468)
T ss_pred CHHHHHHHHHHHHHCCcEEEEEccc
Confidence 5789999999999999999999644
No 152
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=42.09 E-value=46 Score=30.67 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-++..+.+|...|+++.++.. .+. ..+.......+.|+++.+.|+++|+++.|-.|.
T Consensus 89 ~~i~~a~~lga~~i~~~~g~~~-~~~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 89 AAIRYARALGNKKINCLVGKTP-AGF-SSEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHhCCCEEEECCCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4566667999999999887531 110 011111123467788889999999998887765
No 153
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=41.98 E-value=21 Score=34.19 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=35.6
Q ss_pred CCCcHHHHHHH-HhcCCcEEEeccccccccCCCC---CCCCccccHHHHHHHHHHHHhCCCceEEeeC
Q 020265 228 TYIVEDDFKFI-AGNGLNAVRIPVGWWMASDPTP---PAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 228 t~ite~Df~~i-a~~G~N~VRiPv~yw~~~~~~~---~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+|-+|++.. ...|..+.++++=+ ++.+.. +.|| .++.|.++.++|+++||+|.+|=-
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~--le~t~~~~GG~~~---s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVS--LENTTELAGGTVY---SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEE--EESSBTTTTSB------HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CCCCHHHHHHHhhhccccCCCccEEE--EEecCcCCCCeeC---CHHHHHHHHHHHHhCceEEEEehh
Confidence 56777888865 45455344444422 222211 3344 589999999999999999999943
No 154
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=41.74 E-value=29 Score=35.60 Aligned_cols=77 Identities=17% Similarity=0.288 Sum_probs=45.9
Q ss_pred hhhhhccCCCCCchHHHhhcccCCCcHHHHHHHH-hcCCcEEEeccccccccCCCCCCCCc----cc----cHHHHHHHH
Q 020265 206 EFQVTNGYGPQKAPQVMRKHWSTYIVEDDFKFIA-GNGLNAVRIPVGWWMASDPTPPAPYV----GG----SLRALDNAF 276 (328)
Q Consensus 206 E~~l~~~~G~~~a~~~l~~h~~t~ite~Df~~ia-~~G~N~VRiPv~yw~~~~~~~~~p~~----~~----~~~~ld~~i 276 (328)
=|..| .|...+...|+..|. ..+..++ +.||..||+ ++.+.+.. ..+. .+ .|.+||+++
T Consensus 23 ~W~~~--~~~g~a~~~l~~~~q-----~~l~~~~~~~gf~yvR~---h~l~~ddm--~~~~~~~~~~~~~Ynf~~lD~i~ 90 (486)
T PF01229_consen 23 FWRFC--VGSGRANLLLRADWQ-----EQLRELQEELGFRYVRF---HGLFSDDM--MVYSESDEDGIPPYNFTYLDQIL 90 (486)
T ss_dssp GGGSE--EEES-GGGGGBHHHH-----HHHHHHHCCS--SEEEE---S-TTSTTT--T-EEEEETTEEEEE--HHHHHHH
T ss_pred hhhhh--cCCCchHHHhhHHHH-----HHHHHHHhccCceEEEE---EeeccCch--hhccccccCCCCcCChHHHHHHH
Confidence 34444 245567777777774 5677776 779999996 44443321 1111 01 599999999
Q ss_pred HHHHhCCCceEEeeCCCCC
Q 020265 277 TWAGYAFFPVPSDITISVT 295 (328)
Q Consensus 277 ~wa~~~gl~VilDlH~~~p 295 (328)
+...++||+-+|.|=- .|
T Consensus 91 D~l~~~g~~P~vel~f-~p 108 (486)
T PF01229_consen 91 DFLLENGLKPFVELGF-MP 108 (486)
T ss_dssp HHHHHCT-EEEEEE-S-B-
T ss_pred HHHHHcCCEEEEEEEe-ch
Confidence 9999999999999976 55
No 155
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=41.09 E-value=2.1e+02 Score=23.78 Aligned_cols=70 Identities=4% Similarity=0.051 Sum_probs=49.9
Q ss_pred cccceEEEeeccccEEEeec-CccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-C--CceEEeeccc
Q 020265 99 GWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-P--NGFFLQAKTE 174 (328)
Q Consensus 99 hWEtF~l~~ite~d~~lra~-n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~--nG~~v~a~~~ 174 (328)
.+..|++..+..+.+.||.. .++|+|.+. -|.+-+.. .+...+.|.-....++ =..+.+ . .+.||..+..
T Consensus 28 ~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~---~G~ly~s~-~~~~dC~F~E~~~~n~--Y~~y~S~~~~~~~ylal~~~ 101 (123)
T cd00058 28 SYTILERIAVAVGVVSIKGVASCRYLCMNK---CGKLYGSK-GFTEECLFREELLENN--YNTYASAKYRRRWYLALNKK 101 (123)
T ss_pred CCceEEEEECCCCEEEEEEcccceEEEECC---CCCEEECC-CCCCCCEEEEEEccCC--cEEEEEcccCCCcEEEECCC
Confidence 57888888888889999997 999999987 45577766 8899999965544332 233333 2 3566666543
No 156
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.07 E-value=35 Score=35.12 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=41.0
Q ss_pred cHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEEe-eCCCCCCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSD-ITISVTTS 297 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~VilD-lH~~~pG~ 297 (328)
+++-++.++++|++.|-|-+ ....+.. -+-+. ....+...++|++++++||.+..+ +-+ .||-
T Consensus 286 d~ell~~l~~aG~~~v~iGi--ES~~~~~-L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G-~P~e 350 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGT--EAAAQAT-LDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITG-FENE 350 (497)
T ss_pred CHHHHHHHHHhCCcEEEEcc--ccCCHHH-HHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEE-CCCC
Confidence 56778889999998655544 3321100 00011 125677889999999999999888 455 6764
No 157
>PLN02368 alanine transaminase
Probab=40.24 E-value=33 Score=34.30 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|++|++.||.|=
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE 250 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDE 250 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57999999999999999999994
No 158
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=38.80 E-value=26 Score=35.05 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCceEEeeCCCCCCCCCCCCCCCCCCCCCC
Q 020265 272 LDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVHNTPK 312 (328)
Q Consensus 272 ld~~i~wa~~~gl~VilDlH~~~pG~qn~~~~sG~~~~~~~ 312 (328)
+|.+.+.|++|||.||-|-+. +-|+.-...+.|.++.-..
T Consensus 138 m~~i~~la~~~~l~vIEDaAq-a~Ga~y~gk~vGt~Gd~~~ 177 (374)
T COG0399 138 MDAIMALAKRHGLPVIEDAAQ-AHGATYKGKKVGSFGDIGA 177 (374)
T ss_pred HHHHHHHHHHcCCeEEEEcch-hccCeecCcccccccceEE
Confidence 788999999999999999999 9999888778888765444
No 159
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.60 E-value=37 Score=33.71 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=41.5
Q ss_pred cHHHHHHHHhcCCcEEEecccccc--ccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~--~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.++|++...+.|+..|||.++-+. ........ ....++.+.++++.|+++|+.|.+..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s--~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKT--REEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999998775322 11100011 13468889999999999999998864
No 160
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.30 E-value=50 Score=30.15 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-++..+.+|...||++.+... .+. +.+.......+.|.++.+.|+++||.+.|-.|.
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~-~~~-~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRP-AGV-SPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCC-CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3466678999999999876431 110 001111113466888899999999999998775
No 161
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=38.26 E-value=53 Score=31.41 Aligned_cols=26 Identities=12% Similarity=-0.041 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
|...-++++.++|+++|+.|++|-=.
T Consensus 152 G~~~~~~~I~~l~~~~~~~~ivD~a~ 177 (353)
T TIGR03235 152 GSIQPIREIAEVLEAHEAFFHVDAAQ 177 (353)
T ss_pred eeccCHHHHHHHHHHcCCEEEEEchh
Confidence 44555899999999999999999854
No 162
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=37.90 E-value=86 Score=24.57 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=37.6
Q ss_pred ceeeeeeecccccccccCCC---hhhhhcccccccccceEEEeeccccEEEeec-CccEEEeec
Q 020265 68 QLQFKSVTVGKYLCAENGGG---TIVVANRTSASGWETFKLWRINETNFHFRVF-NKQFIGLDT 127 (328)
Q Consensus 68 ~v~l~~~~~~kyv~ae~gg~---~~l~Anr~~~~hWEtF~l~~ite~d~~lra~-n~~~v~a~~ 127 (328)
...|+....+++|....+.. ..+..-......-..|+|...+++.|.|++. .++++-+.+
T Consensus 16 ~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 16 YYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp EEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGG
T ss_pred EEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECC
Confidence 45667667788887764421 1111111111346789999988888999987 577777764
No 163
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=37.50 E-value=35 Score=32.54 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcEEEeccc--cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~--yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.+++...+.|++.|+|.++ -.+...... .-....++.+.++++.|+++|++|.+.+=.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~--~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR--KTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC--cCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 46899889999999998873 222211101 111347899999999999999999887743
No 164
>PRK05839 hypothetical protein; Provisional
Probab=37.41 E-value=37 Score=33.12 Aligned_cols=25 Identities=24% Similarity=-0.004 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|=.-
T Consensus 173 s~~~l~~i~~~~~~~~~~ii~DE~Y 197 (374)
T PRK05839 173 SLEELIEWVKLALKHDFILINDECY 197 (374)
T ss_pred CHHHHHHHHHHHHHcCCEEEeccch
Confidence 5788999999999999999999643
No 165
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.89 E-value=96 Score=29.76 Aligned_cols=56 Identities=18% Similarity=0.085 Sum_probs=37.1
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCc---cc--cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV---GG--SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~---~~--~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-++.|+..|+|.+-|=+.- .+ +-+..|.+ .+ .-+.+.++++.|+++||.||--+-.
T Consensus 22 ~id~ma~~k~N~l~lhl~D-~f--~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~ 82 (301)
T cd06565 22 LLRLLALLGANGLLLYYED-TF--PYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQT 82 (301)
T ss_pred HHHHHHHcCCCEEEEEEec-ce--ecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCC
Confidence 3556789999998875521 01 00112221 11 4689999999999999999987643
No 166
>PRK07681 aspartate aminotransferase; Provisional
Probab=36.85 E-value=38 Score=33.20 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|=.-
T Consensus 184 s~~~~~~i~~~a~~~~~~iI~De~y 208 (399)
T PRK07681 184 HEDFFKEVIAFAKKHNIIVVHDFAY 208 (399)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 5788999999999999999999755
No 167
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=36.81 E-value=40 Score=34.70 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+.+++++|++++++||.|=-
T Consensus 217 s~e~l~~L~~~a~~~~i~lI~DEi 240 (496)
T PLN02376 217 DKDTLTNLVRFVTRKNIHLVVDEI 240 (496)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcC
Confidence 578999999999999999999963
No 168
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.80 E-value=85 Score=29.48 Aligned_cols=49 Identities=24% Similarity=0.135 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++.++++++.||++|-|.-++-.+ ..+...++|+.++++|++|+--++.
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~~~i------------~~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGSMEI------------SLEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCC------------CHHHHHHHHHHHHhCCCeEeccccc
Confidence 456779999999999998876422 1355667777788888888776665
No 169
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=36.36 E-value=27 Score=36.17 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=45.9
Q ss_pred HhhcccCCCcHHHHHHHHhcCCcEEEeccccccccCCCC---CCCCc-cc-cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 222 MRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTP---PAPYV-GG-SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 222 l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~---~~p~~-~~-~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-.||.+-.-.+|++..+.+|++.+|+-| + |.++ .+-+. .+ ...|+++.++-|..++|+|+|-+=.
T Consensus 19 mw~~~~~~ei~~dle~a~~vg~k~lR~fi----L-DgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitliv 89 (587)
T COG3934 19 MWPAIGNREIKADLEPAGFVGVKDLRLFI----L-DGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIV 89 (587)
T ss_pred HHHHhhhhhhhcccccccCccceeEEEEE----e-cCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEee
Confidence 33444433345788888999999999974 2 3211 11122 23 4999999999999999999998766
No 170
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=36.34 E-value=38 Score=33.38 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|++|++.||.|=
T Consensus 194 s~~~~~~l~~~a~~~~~~iI~De 216 (409)
T PRK07590 194 TKEQLKAWVDYAKENGSLILFDA 216 (409)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEc
Confidence 57899999999999999999995
No 171
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=36.20 E-value=36 Score=33.57 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=39.9
Q ss_pred cHHHHHHHHhcCCcEEEecccccc--ccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWM--ASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~--~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.++|++...+.|+..|||.++-.. ........ ....++.+.++|+.|+++|+.|.+.+
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s--~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKD--RAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcC--HHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 478999999999999998875321 11000000 12357888889999999999887654
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=36.04 E-value=44 Score=33.10 Aligned_cols=60 Identities=13% Similarity=0.043 Sum_probs=42.7
Q ss_pred cHHHHHHHHhcCCcEEEecccc--ccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~y--w~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++|++...+.|+..|+|.++= .+........ ....++.+.++|+.|+++|++|...+-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t--~~e~l~~~~~~v~~Ak~~Gl~v~~~is~ 184 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCS--IEESLVRYREVALAAKKHSIPVRGYVSC 184 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 6799999999999999988742 1111100111 1347888999999999999999755543
No 173
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=35.85 E-value=40 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+++++++|++|++.||.|=-
T Consensus 184 s~~~~~~l~~~a~~~~~~ii~De~ 207 (396)
T PRK09147 184 PLDDWKKLFALSDRYGFVIASDEC 207 (396)
T ss_pred CHHHHHHHHHHHHHcCeEEEeecc
Confidence 578999999999999999999853
No 174
>PRK08068 transaminase; Reviewed
Probab=35.84 E-value=40 Score=32.88 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|=.-
T Consensus 185 s~~~~~~l~~la~~~~~~ii~Deay 209 (389)
T PRK08068 185 TKAFFEETVAFAKKHNIGVVHDFAY 209 (389)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhh
Confidence 5789999999999999999999654
No 175
>PRK07094 biotin synthase; Provisional
Probab=35.76 E-value=45 Score=31.90 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=37.5
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCC--CCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDP--TPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~--~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+++++++.|+++|++.|-+.+ ....+. ..-.| ...++..-+++++++++|+.|-.++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~gl--Es~~~~~~~~i~~--~~s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRH--ETADKELYAKLHP--GMSFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEecc--ccCCHHHHHHhCC--CCCHHHHHHHHHHHHHcCCeecceE
Confidence 678999999999999776544 221100 00011 1357778889999999998765543
No 176
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=34.82 E-value=84 Score=30.23 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCc-eEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP-VPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~-VilDlH~ 292 (328)
++..+.+++.|++.|.|.+.-.. +.-..-.. .+.++.+-+.|+.+++.|+. |-|.+..
T Consensus 102 ~~~~~~L~~~gl~~v~ISld~~~---~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSLDSLD---PERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEecccCC---HHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 35678888999998888884211 00001111 12456666666666666665 5554433
No 177
>PRK09148 aminotransferase; Validated
Probab=34.40 E-value=43 Score=33.09 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|=.-
T Consensus 183 s~~~l~~l~~~a~~~~~~ii~De~Y 207 (405)
T PRK09148 183 DLDFYKDVVAFAKKHDIIILSDLAY 207 (405)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 5788999999999999999999654
No 178
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=33.98 E-value=71 Score=30.13 Aligned_cols=49 Identities=16% Similarity=0.042 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++.++++++.||++|-|.-+.-.+ .-+...++|+.|++.|++|+--+..
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGti~l------------~~~~r~~~I~~~~~~Gf~v~~EvG~ 135 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGTIDL------------PEEERLRLIRKAKEEGFKVLSEVGK 135 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEEEES-
T ss_pred HHHHHHHHHcCCCEEEecCCceeC------------CHHHHHHHHHHHHHCCCEEeecccC
Confidence 678899999999999998875422 1355667788888888888877765
No 179
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=33.92 E-value=50 Score=32.71 Aligned_cols=25 Identities=20% Similarity=-0.039 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|++|++.||.|---
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~De~Y 212 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIADEVY 212 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4788999999999999999999644
No 180
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.86 E-value=53 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=41.3
Q ss_pred ccCCCcHHHHHHHH---hcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEEeeCCCCCC
Q 020265 226 WSTYIVEDDFKFIA---GNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDITISVTT 296 (328)
Q Consensus 226 ~~t~ite~Df~~ia---~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG 296 (328)
+...++++.++.|+ ++|++ +||-+|-..+.+.. -.-.- ....+.+.++++.++++|+.|..|+=-..||
T Consensus 117 rpd~l~~e~l~~L~~l~~~G~~-~~i~lGlQS~~d~~-L~~i~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg 189 (302)
T TIGR01212 117 RPDCVPDEVLDLLAEYVERGYE-VWVELGLQTAHDKT-LKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPG 189 (302)
T ss_pred cCCcCCHHHHHHHHHhhhCCce-EEEEEccCcCCHHH-HHHHcCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC
Confidence 34567777777666 45885 45555544332110 00000 1156788899999999999988875432665
No 181
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=33.84 E-value=50 Score=33.44 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-+.+.+++++|++++++||.|=.-
T Consensus 218 s~e~l~~l~~~~~~~~i~lI~DEiY 242 (447)
T PLN02607 218 QRSVLEDILDFVVRKNIHLVSDEIY 242 (447)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccc
Confidence 4688999999999999999999755
No 182
>PRK08636 aspartate aminotransferase; Provisional
Probab=33.76 E-value=46 Score=32.75 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|++|++.||.|-.-
T Consensus 193 s~~~~~~l~~~a~~~~~~II~De~Y 217 (403)
T PRK08636 193 EKSFYERLVALAKKERFYIISDIAY 217 (403)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 5799999999999999999999765
No 183
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=33.68 E-value=51 Score=32.30 Aligned_cols=25 Identities=12% Similarity=-0.137 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-+++++++++|++|++.||.|-.-
T Consensus 190 s~~~~~~l~~~a~~~~~~ii~De~Y 214 (396)
T PRK09257 190 TPEQWDELAELLKERGLIPFLDIAY 214 (396)
T ss_pred CHHHHHHHHHHHHhCCcEEEEeccc
Confidence 5799999999999999999998644
No 184
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=33.57 E-value=39 Score=32.87 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCceEEeeCCCCCCCCCCCCCCCCCC
Q 020265 270 RALDNAFTWAGYAFFPVPSDITISVTTSQDLTIMGGPVH 308 (328)
Q Consensus 270 ~~ld~~i~wa~~~gl~VilDlH~~~pG~qn~~~~sG~~~ 308 (328)
..+|++.++|+++||.||-|--. +.|+.-...+.|..+
T Consensus 127 ~d~~~i~~~~~~~~i~lIeD~a~-a~g~~~~g~~~G~~g 164 (363)
T PF01041_consen 127 ADMDAIRAIARKHGIPLIEDAAQ-AFGARYKGRPVGSFG 164 (363)
T ss_dssp --HHHHHHHHHHTT-EEEEE-TT-TTT-EETTEETTSSS
T ss_pred ccHHHHHHHHHHcCCcEEEcccc-ccCceeCCEeccCCC
Confidence 35899999999999999999999 888865555555544
No 185
>PRK09389 (R)-citramalate synthase; Provisional
Probab=33.38 E-value=48 Score=34.23 Aligned_cols=61 Identities=11% Similarity=-0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++|++...+.|.+.|+|.++-+...-...-.--....++.+.++++.|+++|+.|.+++=.
T Consensus 76 ~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 76 KVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred HHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 6899999999999999988644321000000011236888888999999999999887643
No 186
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=33.12 E-value=43 Score=32.77 Aligned_cols=25 Identities=28% Similarity=0.202 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|++|++.||.|=.-
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De~Y 207 (393)
T TIGR03538 183 SLDTLKKLIELADQYGFIIASDECY 207 (393)
T ss_pred CHHHHHHHHHHHHHCCEEEEECcch
Confidence 4788999999999999999999654
No 187
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=33.05 E-value=48 Score=32.31 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|++||+.||.|=
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De 205 (388)
T PRK07366 183 PLSFFQEAVAFCQQHDLVLVHDF 205 (388)
T ss_pred CHHHHHHHHHHHHHcCeEEEEec
Confidence 57899999999999999999993
No 188
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.00 E-value=99 Score=29.64 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++-|++++++|+.-|.|=+ +... . +...+..+++++-|.+|. ++||+|+
T Consensus 109 ~~~f~~~~~~Gv~GvKidF----~~~d---~---Q~~v~~y~~i~~~AA~~~--LmvnfHg 157 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDF----MDRD---D---QEMVNWYEDILEDAAEYK--LMVNFHG 157 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE------SST---S---HHHHHHHHHHHHHHHHTT---EEEETT
T ss_pred HHHHHHHHHcCCCEEeeCc----CCCC---C---HHHHHHHHHHHHHHHHcC--cEEEecC
Confidence 7889999999999999755 2211 1 235788999999999986 5889999
No 189
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.90 E-value=1.5e+02 Score=28.07 Aligned_cols=49 Identities=16% Similarity=0.027 Sum_probs=37.0
Q ss_pred HHhcCCcEEEeccccccccCCCCCCCC--ccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 238 IAGNGLNAVRIPVGWWMASDPTPPAPY--VGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 238 ia~~G~N~VRiPv~yw~~~~~~~~~p~--~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++.|++.+|=-. + ++. ..|| ..-+.+-|+.+.+.|+++||.|+-|.|.
T Consensus 38 ~~~~g~~~~r~g~----~-kpR-ts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 38 AKKLGYNYFRGGA----Y-KPR-TSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred HHHcCCCEEEecc----c-CCC-CCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 7788999998654 2 232 1243 3226789999999999999999999998
No 190
>PRK06207 aspartate aminotransferase; Provisional
Probab=32.80 E-value=52 Score=32.53 Aligned_cols=25 Identities=16% Similarity=-0.104 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|=.-
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~De~Y 220 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIVDQLY 220 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 4688999999999999999999765
No 191
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.74 E-value=80 Score=31.01 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCcc-ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.|+++|.+.|.+=+ ||...+ .|-+. -..++|.++.++|++.+|.-+|-+=.
T Consensus 110 S~~rike~GadavK~Ll-yy~pD~----~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 110 SAKRIKEEGADAVKFLL-YYDVDE----PDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred hHHHHHHhCCCeEEEEE-EECCCC----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 57789999999999988 442211 12121 26899999999999999999998876
No 192
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=32.69 E-value=72 Score=31.03 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCC------CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTP------PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~------~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+-++++++.|+|+ |.-.-...+ .+||....++.|.++++.|++.|+..+.=||.
T Consensus 19 ~l~~f~~~~kmN~------YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 19 DLIRFLGRYKMNT------YIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp HHHHHHHHTT--E------EEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred HHHHHHHHcCCce------EEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 4578889999995 322211111 25666667999999999999999999999998
No 193
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=32.47 E-value=1.1e+02 Score=29.35 Aligned_cols=54 Identities=13% Similarity=-0.048 Sum_probs=36.1
Q ss_pred HHHhcCCcEEEeccccccccC-------CCCCCCCccc---cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 237 FIAGNGLNAVRIPVGWWMASD-------PTPPAPYVGG---SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 237 ~ia~~G~N~VRiPv~yw~~~~-------~~~~~p~~~~---~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+..|...+.+|...-.+.. .+|.+| .| ..+.|.+++++|++++..||+|=--
T Consensus 109 ~~~~~g~~~~~v~~~~~~~~~~~~~v~l~nPnNP--TG~~~s~~~l~~l~~~~~~~~~~vI~DEay 172 (339)
T PRK06959 109 AFARHGHRVVPLDEAADTLPAALTHLIVVNPNNP--TAERLPAARLLRWHAQLAARGGTLIVDEAF 172 (339)
T ss_pred HHHHCCCEEEeecccchhccccCCEEEEeCCCCC--CCCCCCHHHHHHHHHHHHHcCCEEEEECCC
Confidence 345678888888875311111 135555 22 4678999999999999999998643
No 194
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.41 E-value=67 Score=29.60 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-++.-+..|...|+++-+.-... ...+.......+.|+++.+.|+++||++.|--|.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 446667789999999965421110 0111112235678999999999999988888775
No 195
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=31.84 E-value=76 Score=30.46 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=38.6
Q ss_pred CCCcHHH----HHHHHhcCCcEEEeccc----cccccCCCC-------CCC-----CccccHHHHHHHHHHHHhCCCceE
Q 020265 228 TYIVEDD----FKFIAGNGLNAVRIPVG----WWMASDPTP-------PAP-----YVGGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 228 t~ite~D----f~~ia~~G~N~VRiPv~----yw~~~~~~~-------~~p-----~~~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
.|++-+. ++.|+..++|.+-+-+. |..-....| ..+ ++ .-+.|+++|+.|+++||.||
T Consensus 13 ~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~y--T~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 13 HFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYY--TKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp S-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEB--EHHHHHHHHHHHHHTT-EEE
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccC--CHHHHHHHHHHHHHcCCcee
Confidence 4444444 45678899999887773 221111101 001 12 35899999999999999999
Q ss_pred EeeCCCCCCCC
Q 020265 288 SDITISVTTSQ 298 (328)
Q Consensus 288 lDlH~~~pG~q 298 (328)
..+=. ||-.
T Consensus 91 Peid~--PGH~ 99 (351)
T PF00728_consen 91 PEIDT--PGHA 99 (351)
T ss_dssp EEEEE--SSS-
T ss_pred eeccC--chHH
Confidence 87743 5543
No 196
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=31.78 E-value=37 Score=31.11 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 232 EDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
..+.+...++|.+-|-+-+.|...... .+ ....+.+.++++.|+++||+|||-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~----~~-~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG----NE-DEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT----HH-HHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc----cH-HHHHHHHHHHHHHHhcCCcEEEEE
Confidence 355777789999999999977554321 11 236889999999999999999997
No 197
>PTZ00377 alanine aminotransferase; Provisional
Probab=31.67 E-value=54 Score=33.29 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+++++++|++|++.||.|=
T Consensus 236 s~e~~~~i~~~a~~~~~~iI~De 258 (481)
T PTZ00377 236 TRDVMEEIIKFCYEKGIVLMADE 258 (481)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeh
Confidence 57899999999999999999994
No 198
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=31.40 E-value=1.4e+02 Score=28.06 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCceEEee
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+.++++..+.+++.|++.|.|.+.-.. +...+++. .+.++..-++++.+++.|+.|.+..
T Consensus 104 ~~~~~~~~~~l~~~g~~~v~iSid~~~---~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~ 165 (347)
T COG0535 104 TLLTEEVLEKLKEAGLDYVSISLDGLD---PETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINT 165 (347)
T ss_pred ccCCHHHHHHHHhcCCcEEEEEecCCC---hhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEE
Confidence 348889999999999999999995321 11112332 3568888888888888887644443
No 199
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=31.36 E-value=54 Score=32.22 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++++.||+|-.-
T Consensus 191 s~~~~~~l~~~a~~~~~~iI~De~y 215 (402)
T TIGR03542 191 TKEQLKELVDYANEHGSLILFDAAY 215 (402)
T ss_pred CHHHHHHHHHHHHHcCeEEEEEchh
Confidence 4688999999999999999999865
No 200
>PRK06256 biotin synthase; Validated
Probab=31.09 E-value=55 Score=31.54 Aligned_cols=58 Identities=9% Similarity=-0.070 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEEee
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.++++.++.|+++|++.|=+.+ .. ++.-.+-.. ...++..-++++.|++.||+|-..+
T Consensus 149 ~l~~e~l~~LkeaG~~~v~~~l--Et--s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 149 LLTEEQAERLKEAGVDRYNHNL--ET--SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred cCCHHHHHHHHHhCCCEEecCC--cc--CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCe
Confidence 4889999999999998664433 21 110000000 1357888889999999999865543
No 201
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.06 E-value=1.4e+02 Score=27.78 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=33.9
Q ss_pred cHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 231 VEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 231 te~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+|++...+.|++.|||.+.-- ....+.+++++|++.|+.|.+.+
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s--------------~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCT--------------EADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechh--------------hHHHHHHHHHHHHHCCCeEEEEE
Confidence 35889999999999999876211 12356777888888888877766
No 202
>PRK06290 aspartate aminotransferase; Provisional
Probab=30.96 E-value=54 Score=32.64 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-+.+.+++++|++||+.||+|=.-
T Consensus 197 s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 197 TKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecch
Confidence 5788999999999999999999765
No 203
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.84 E-value=1.3e+02 Score=28.74 Aligned_cols=59 Identities=14% Similarity=-0.024 Sum_probs=36.9
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-+++-+++|+..|=|=-+|.........++........|.++|+.|++.|++|+|=.|.
T Consensus 37 yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 37 YIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 45666899999999977775422111111211123577999999999999999999998
No 204
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.59 E-value=1.5e+02 Score=29.44 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCC------CCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPT------PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 298 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~------~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~q 298 (328)
+-.+++-++.|+++|++.|-+.++- .|+. .-+-| ..+++.++.+|+...+|.|+|---- +||--
T Consensus 200 ~~L~~~lv~eLeeAGLdRiNlSv~a---LDpk~Ak~L~G~~dY---dv~kvle~aE~i~~a~idvlIaPv~-lPG~N 269 (414)
T COG2100 200 VLLSKKLVDELEEAGLDRINLSVDA---LDPKLAKMLAGRKDY---DVKKVLEVAEYIANAGIDVLIAPVW-LPGVN 269 (414)
T ss_pred eeccHHHHHHHHHhCCceEEeeccc---CCHHHHHHhcCcccc---CHHHHHHHHHHHHhCCCCEEEeeee-cCCcC
Confidence 4578899999999999999999842 2321 11112 5788999999999999999998877 77753
No 205
>PTZ00376 aspartate aminotransferase; Provisional
Probab=30.48 E-value=60 Score=31.99 Aligned_cols=25 Identities=4% Similarity=-0.198 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|++|++.||.|-.-
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y 218 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAY 218 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhh
Confidence 5799999999999999999999754
No 206
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=30.39 E-value=67 Score=35.14 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=45.2
Q ss_pred HHHHHHhcCCcEEEe-cc---------ccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee---CCCCCCCCCC
Q 020265 234 DFKFIAGNGLNAVRI-PV---------GWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI---TISVTTSQDL 300 (328)
Q Consensus 234 Df~~ia~~G~N~VRi-Pv---------~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl---H~~~pG~qn~ 300 (328)
-+.++++.|+.|+=+ || ||-. .|++.-+|-. |+.+-|.+++..+++.||.+|+|+ |-.+-|.+|.
T Consensus 24 ~l~yl~~LGIShLY~SPIftA~pGStHGYDV-vD~t~InPeL-GG~egl~rLvaalk~~GlGlI~DIVPNHMav~g~~N~ 101 (889)
T COG3280 24 LLDYLADLGISHLYLSPIFTARPGSTHGYDV-VDPTEINPEL-GGEEGLERLVAALKSRGLGLIVDIVPNHMAVGGHENP 101 (889)
T ss_pred hhHHHHhcCchheeccchhhcCCCCCCCccC-CCccccChhh-cChHHHHHHHHHHHhcCCceEEEecccchhcccccCh
Confidence 356789999999875 44 2332 2332223422 578889999999999999999998 4412235565
Q ss_pred CCC
Q 020265 301 TIM 303 (328)
Q Consensus 301 ~~~ 303 (328)
+.+
T Consensus 102 ww~ 104 (889)
T COG3280 102 WWW 104 (889)
T ss_pred HHH
Confidence 544
No 207
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.35 E-value=88 Score=31.86 Aligned_cols=55 Identities=18% Similarity=0.012 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEEeccc---cccccC---C-CCCCCCc---cccHHHHHHHHHHHHhCCCceE
Q 020265 233 DDFKFIAGNGLNAVRIPVG---WWMASD---P-TPPAPYV---GGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~---yw~~~~---~-~~~~p~~---~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
+-++.+..+|||+|=..|. |=..-. + ...-|++ ..+++-|..+|+.|+|+||.|+
T Consensus 68 ~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~ 132 (418)
T COG1649 68 DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVH 132 (418)
T ss_pred HHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeee
Confidence 4578899999999987662 211100 0 1112332 3478999999999999999996
No 208
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.17 E-value=1.6e+02 Score=23.16 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHhcC-CcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEE
Q 020265 228 TYIVEDDFKFIAGNG-LNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPS 288 (328)
Q Consensus 228 t~ite~Df~~ia~~G-~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~Vil 288 (328)
+..+..||+.+-+.| ++.|++=+.+ .|++....++.+.|+++|+.+.+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~-------------~GGit~~~~i~~~A~~~gi~~~~ 51 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTR-------------CGGITEALRIAALAEAHGIPVMP 51 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHH-------------HTSHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchh-------------cCCHHHHHHHHHHHHHhCCCEEe
Confidence 345668888876654 5666554421 35788999999999999999875
No 209
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.03 E-value=63 Score=30.47 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCcEEEeccc--cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 232 EDDFKFIAGNGLNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 232 e~Df~~ia~~G~N~VRiPv~--yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
+.+++.+++.|++.|||.++ -.+........ ....++.+.++++.|+++|++|.+.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~--~~~~~~~~~~~i~~ak~~G~~v~~~ 138 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTT--LEENLAMIRDSVAYLKSHGREVIFD 138 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 45788889999999998764 12111110111 1236888999999999999999884
No 210
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=30.03 E-value=57 Score=29.65 Aligned_cols=51 Identities=16% Similarity=-0.054 Sum_probs=36.7
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++...+.|.+.|=+-+..- .. +. ...++.+.++.+.|+++|+++|||.|.
T Consensus 81 ~v~~a~~~Ga~~v~~~~~~~---~~----~~-~~~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 81 SVEDAVRLGADAVGVTVYVG---SE----EE-REMLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred CHHHHHHCCCCEEEEEEecC---Cc----hH-HHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 36677789999874444211 11 11 235788999999999999999999987
No 211
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=29.98 E-value=45 Score=32.82 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.-+++++++++|++||+.+|+|=
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DE 225 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDE 225 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 46899999999999999999983
No 212
>PLN02231 alanine transaminase
Probab=29.58 E-value=61 Score=33.75 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|++||+.||.|=
T Consensus 289 s~e~l~~Iv~~a~~~~l~lI~DE 311 (534)
T PLN02231 289 AEENQRDIVEFCKQEGLVLLADE 311 (534)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 57999999999999999999993
No 213
>PRK06855 aminotransferase; Validated
Probab=29.31 E-value=64 Score=32.29 Aligned_cols=23 Identities=13% Similarity=-0.101 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|++||+.||.|=
T Consensus 189 s~~~~~~l~~~a~~~~~~II~De 211 (433)
T PRK06855 189 PKEILREIVDIAREYDLFIICDE 211 (433)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 57999999999999999999985
No 214
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=29.13 E-value=54 Score=31.24 Aligned_cols=25 Identities=20% Similarity=0.004 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|++||+.||+|-.-
T Consensus 166 ~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 166 SLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccccccchhhhhcccccceeeeece
Confidence 5799999999999999999999876
No 215
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=29.06 E-value=63 Score=32.93 Aligned_cols=31 Identities=26% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCCcc-ccHHHHHHHHHHHHhCCCceEEee
Q 020265 260 PPAPYVG-GSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 260 ~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
|.+|+-. -.-+.|..+++||.+++|+||+|=
T Consensus 235 PsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DE 266 (471)
T KOG0256|consen 235 PSNPLGTTLSPEELISLLNFASRKNIHVISDE 266 (471)
T ss_pred CCCCCCCccCHHHHHHHHHHHhhcceEEEeeh
Confidence 4567521 146889999999999999999994
No 216
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=29.04 E-value=1.4e+02 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCcEEEeccc
Q 020265 233 DDFKFIAGNGLNAVRIPVG 251 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~ 251 (328)
+..+.+++.|++.|.|.+.
T Consensus 105 ~~~~~L~~aGl~~v~ISlD 123 (329)
T PRK13361 105 RFAAELADAGLKRLNISLD 123 (329)
T ss_pred HHHHHHHHcCCCeEEEEec
Confidence 4678899999999999884
No 217
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=29.01 E-value=55 Score=32.15 Aligned_cols=26 Identities=8% Similarity=-0.172 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..-+|+|.+++.|++++|.||+=-+.
T Consensus 50 ~~~~yv~~~l~~C~~~~Idv~~P~~~ 75 (329)
T PF15632_consen 50 DGEEYVDWCLDFCKEHGIDVFVPGRN 75 (329)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEcCcc
Confidence 36799999999999999999985443
No 218
>PLN02389 biotin synthase
Probab=28.82 E-value=97 Score=30.96 Aligned_cols=56 Identities=11% Similarity=-0.069 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceE
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
..++++.++.|+++|++.+-+ ..-. .+.-+.-.. ...++..-+.++.|++.||+|.
T Consensus 174 G~l~~E~l~~LkeAGld~~~~--~LeT--s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 174 GMLEKEQAAQLKEAGLTAYNH--NLDT--SREYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred CCCCHHHHHHHHHcCCCEEEe--eecC--ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 468999999999999997544 3221 010010011 2368888899999999999873
No 219
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=28.65 E-value=58 Score=31.22 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
++..|.++++++++.|+.||+|+--
T Consensus 71 G~~~l~~~i~~l~~~g~~VilD~K~ 95 (278)
T PRK00125 71 GLAQLERTIAYLREAGVLVIADAKR 95 (278)
T ss_pred hhhHHHHHHHHHHHCCCcEEEEeec
Confidence 6889999999999999999999854
No 220
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=28.49 E-value=62 Score=30.00 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.|+.+|++++||+++||+| .-|.
T Consensus 14 n~~~~D~~~~~a~~~gi~v--~gH~ 36 (254)
T smart00633 14 NFSGADAIVNFAKENGIKV--RGHT 36 (254)
T ss_pred ChHHHHHHHHHHHHCCCEE--EEEE
Confidence 5899999999999999998 4554
No 221
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=28.25 E-value=1.8e+02 Score=29.68 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
+=.|.++.+.+.++|++.|++-++-=...........-..++..+.++.+.|+++++.||-|
T Consensus 272 ~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 272 NVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred eCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 34788999999999999999876421111110000110116788899999999999999986
No 222
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=28.19 E-value=63 Score=30.37 Aligned_cols=23 Identities=13% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCCceEEeeCC
Q 020265 270 RALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 270 ~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.|.++++.|+++||-+++|+|.
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCC
Confidence 67999999999999999999998
No 223
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.13 E-value=72 Score=31.40 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=44.0
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCcc-ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
|.+-..+.|+++|.+.|.+=+ ||...+ .|-+. -..++|.++.++|++.+|.-+|-+=.
T Consensus 108 l~~ws~~rike~GadavK~Ll-yy~pD~----~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 108 LVEWSVKRLKEAGADAVKFLL-YYDVDG----DEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred cchhhHHHHHHhCCCeEEEEE-EECCCC----CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 334468889999999999988 442211 23221 26899999999999999999999876
No 224
>PRK08175 aminotransferase; Validated
Probab=28.07 E-value=53 Score=32.18 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+.+++++|+++|+.||+|-.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~ 205 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLA 205 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecc
Confidence 578999999999999999999953
No 225
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=27.96 E-value=96 Score=25.84 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+++++++.|++.|+..|.+.+.=..-....... -....++..-++++.++++|+.|.+.+--
T Consensus 86 ~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 86 LTEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred CCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 378999999999999999988421100000000 01235777888888888889998888766
No 226
>PRK14012 cysteine desulfurase; Provisional
Probab=27.89 E-value=1.1e+02 Score=30.03 Aligned_cols=30 Identities=7% Similarity=-0.087 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
|...-++++.++|+++|+.||+|--. +-|.
T Consensus 158 G~~~~~~~I~~la~~~g~~vivD~a~-~~g~ 187 (404)
T PRK14012 158 GVIQDIAAIGEICRERGIIFHVDAAQ-SVGK 187 (404)
T ss_pred cchhhHHHHHHHHHHcCCEEEEEcch-hcCC
Confidence 55666899999999999999999876 4443
No 227
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=27.89 E-value=51 Score=31.81 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|=.-
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y 184 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECY 184 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecch
Confidence 4688999999999999999999543
No 228
>PLN02397 aspartate transaminase
Probab=27.76 E-value=72 Score=31.83 Aligned_cols=25 Identities=4% Similarity=-0.230 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.++++++.|+++|+.||.|---
T Consensus 212 s~e~l~~i~~~a~~~~~~vI~De~Y 236 (423)
T PLN02397 212 TPEQWEQISDLIKSKNHLPFFDSAY 236 (423)
T ss_pred CHHHHHHHHHHHHhCCcEEEEeccc
Confidence 5789999999999999999999543
No 229
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=27.74 E-value=71 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.027 Sum_probs=25.1
Q ss_pred CCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 260 PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 260 ~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
|.+|. +....++++++.|+++|+.||+|---
T Consensus 145 P~NP~--~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 145 PTNPL--MQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCCCC--CcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 45663 45788999999999999999999543
No 230
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=27.72 E-value=67 Score=32.97 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
.-+.|.+++++|++|++.||.|=-
T Consensus 299 ~~~~l~~i~~~a~~~~~~ii~DE~ 322 (517)
T PRK13355 299 PREVLQQIVDIAREHQLIIFSDEI 322 (517)
T ss_pred CHHHHHHHHHHHHHcCcEEEEehh
Confidence 468899999999999999999953
No 231
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=27.67 E-value=2e+02 Score=27.22 Aligned_cols=57 Identities=18% Similarity=0.047 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.++.+++.|.+.|++=..+-. ..+....+...-..+.+.++++.|+++|+.|. +|.
T Consensus 124 ~~v~~~~~~G~~~iK~~~~g~~-~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~--~H~ 180 (342)
T cd01299 124 AAVREQLRRGADQIKIMATGGV-LSPGDPPPDTQFSEEELRAIVDEAHKAGLYVA--AHA 180 (342)
T ss_pred HHHHHHHHhCCCEEEEeccCCc-CCCCCCCcccCcCHHHHHHHHHHHHHcCCEEE--EEe
Confidence 4577778889999998765421 11111111001146889999999999998765 555
No 232
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.48 E-value=65 Score=28.52 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=34.2
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+++.++++|.+.|=++. +. + -..+.+++++|+++|++++++++.
T Consensus 68 ~~~~~~~~Gad~i~vh~-----~~-----~-----~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLG-----VA-----D-----DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEec-----cC-----C-----HHHHHHHHHHHHHcCCEEEEEecC
Confidence 57778899988887653 11 1 145788999999999999999877
No 233
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.37 E-value=68 Score=31.53 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCcEEEeccccccccCCCCCCCCcc-ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 233 DDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVG-GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~-~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-..+.|+++|.+.|.+=+ ||...+ .|-.. -..+++.++.+.|++.+|.-+|-+=.
T Consensus 110 ~s~~rike~GadavK~Ll-yy~pD~----~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 110 WSAKRLKEQGANAVKFLL-YYDVDD----AEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred ccHHHHHHhCCCeEEEEE-EeCCCC----ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 357889999999999988 442211 12221 26899999999999999999998876
No 234
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=27.31 E-value=58 Score=33.06 Aligned_cols=25 Identities=24% Similarity=0.089 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.|+++.+.|++|||.||+|--.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaAr 195 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAAR 195 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEchh
Confidence 4788999999999999999999764
No 235
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=27.30 E-value=56 Score=30.39 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|--.
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~ 174 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAY 174 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecch
Confidence 4678999999999999999999843
No 236
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.17 E-value=76 Score=29.47 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=30.1
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-++..+..|+..|++..+.+.. . +.+.......+.|.++++.|+++|+++.|--|.
T Consensus 90 ~i~~A~~lG~~~v~~~~g~~~~-~--~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 90 EIERCEELGIRLLVFHPGSYLG-Q--SKEEGLKRVIEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHcCCCEEEECCCCCCC-C--CHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 3455567777777776654311 0 011111113466666666666777766666665
No 237
>PRK05942 aspartate aminotransferase; Provisional
Probab=27.13 E-value=52 Score=32.23 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+++++++|+++|+.||+|=.
T Consensus 188 s~~~~~~i~~~a~~~~~~iI~De~ 211 (394)
T PRK05942 188 PREFFEEIVAFARKYEIMLVHDLC 211 (394)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecc
Confidence 468899999999999999999965
No 238
>KOG4485 consensus Uncharacterized conserved protein, contains ankyrin and FN3 repeats [General function prediction only]
Probab=27.03 E-value=67 Score=33.16 Aligned_cols=39 Identities=10% Similarity=0.352 Sum_probs=32.0
Q ss_pred cCCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc
Q 020265 227 STYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV 265 (328)
Q Consensus 227 ~t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~ 265 (328)
+..||.+++++|++.-.|-+|+|+.|-+-+.+...+|+.
T Consensus 259 N~HiTaEEWevihr~d~dplrlpldfsaqggdgas~a~a 297 (724)
T KOG4485|consen 259 NPHITAEEWEVIHRIDMDPLRLPLDFSAQGGDGASEAFA 297 (724)
T ss_pred CCccCHHHHHHHHHhcCCcccCcccccccCCCccccchh
Confidence 467999999999999999999999998765444456764
No 239
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=26.75 E-value=59 Score=33.51 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCCCCCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITISVTT 296 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~~~pG 296 (328)
+.+.++++-+.|++|||+||+|--. +-|
T Consensus 196 s~~~m~~I~elA~~~Gl~Vi~DaAr-a~g 223 (460)
T PRK13237 196 SMANMRAVRELCDKHGIKVFFDATR-CVE 223 (460)
T ss_pred CHHhHHHHHHHHHHcCCEEEEECcc-hhc
Confidence 3678999999999999999999865 444
No 240
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=26.73 E-value=1.7e+02 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=41.6
Q ss_pred CCCcHHHH----HHHHhcCCcEEEeccc----cccccCCC-C-----C---CCCcc-c--cHHHHHHHHHHHHhCCCceE
Q 020265 228 TYIVEDDF----KFIAGNGLNAVRIPVG----WWMASDPT-P-----P---APYVG-G--SLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 228 t~ite~Df----~~ia~~G~N~VRiPv~----yw~~~~~~-~-----~---~p~~~-~--~~~~ld~~i~wa~~~gl~Vi 287 (328)
.|++-+.+ +.|+..++|.+-+=+. |. ++-.. | . .++.. + ..+.+.++++.|+++||.||
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~-le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWR-IESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCce-EeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 45555555 4568889999865553 22 11000 0 0 01111 1 46899999999999999999
Q ss_pred EeeCCCCCCCC
Q 020265 288 SDITISVTTSQ 298 (328)
Q Consensus 288 lDlH~~~pG~q 298 (328)
..+= +||-.
T Consensus 90 PEiD--~PGH~ 98 (303)
T cd02742 90 PEID--MPGHS 98 (303)
T ss_pred Eecc--chHHH
Confidence 8874 35543
No 241
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=26.68 E-value=1.4e+02 Score=28.46 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.1
Q ss_pred ccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 265 VGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 265 ~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
....|..+|++++.|+..-=.||+|+|+
T Consensus 125 ~d~PF~~~d~l~~~~~~~~~~iiVDFHA 152 (266)
T COG1692 125 LDNPFKAADKLLDEIKLGTDLIIVDFHA 152 (266)
T ss_pred cCCHHHHHHHHHHhCccCCceEEEEccc
Confidence 4457899999999998877789999999
No 242
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.63 E-value=65 Score=30.14 Aligned_cols=57 Identities=12% Similarity=-0.030 Sum_probs=38.0
Q ss_pred cHHHHHHHHhcC----CcEEEeccc--cccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEe
Q 020265 231 VEDDFKFIAGNG----LNAVRIPVG--WWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 231 te~Df~~ia~~G----~N~VRiPv~--yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilD 289 (328)
.++|++...+.| ++.||+.++ .-+........ ....++.+.++++.|+++|++|.+.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~--~~~~~~~~~~~i~~a~~~G~~v~~~ 133 (268)
T cd07940 71 VKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKT--REEVLERAVEAVEYAKSHGLDVEFS 133 (268)
T ss_pred CHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCC--HHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 368899988888 999999653 21111000000 1235788889999999999988754
No 243
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=26.39 E-value=54 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCceEEeeCC
Q 020265 271 ALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 271 ~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++++++.|++.|-.|+|++|+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a 26 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA 26 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET
T ss_pred hHHHHHHHHHHcCCCEEEEEEC
Confidence 3789999999999999999987
No 244
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=26.39 E-value=1.7e+02 Score=31.13 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHhhcccCCCcHHHHHHHHhcCCcEEEecccccccc-CC------------CCCCCCccccHHHHHHHHHHHHhCCCce
Q 020265 220 QVMRKHWSTYIVEDDFKFIAGNGLNAVRIPVGWWMAS-DP------------TPPAPYVGGSLRALDNAFTWAGYAFFPV 286 (328)
Q Consensus 220 ~~l~~h~~t~ite~Df~~ia~~G~N~VRiPv~yw~~~-~~------------~~~~p~~~~~~~~ld~~i~wa~~~gl~V 286 (328)
+.+..-|++|+..+--+.+..-|+..+-+.=|..... +. ...+| .++++.+..-++.|++.|.+|
T Consensus 284 ~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp--~~~lqWf~~~L~~ae~~GekV 361 (577)
T KOG3770|consen 284 KHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDP--IDQLQWFVDQLQEAESAGEKV 361 (577)
T ss_pred HHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCc--hHHhhHHHHHHHHHHhcCCEE
Confidence 5677889999999999999888888776654433221 10 11123 236888888899999999999
Q ss_pred EEeeCCCCCCC
Q 020265 287 PSDITISVTTS 297 (328)
Q Consensus 287 ilDlH~~~pG~ 297 (328)
-|=.|. -||-
T Consensus 362 hil~HI-PpG~ 371 (577)
T KOG3770|consen 362 HILGHI-PPGD 371 (577)
T ss_pred EEEEee-CCCC
Confidence 999999 8885
No 245
>PRK05939 hypothetical protein; Provisional
Probab=26.34 E-value=1.1e+02 Score=30.61 Aligned_cols=33 Identities=6% Similarity=-0.261 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHHhCCCceEEee-CCCCCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDI-TISVTTSQDL 300 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDl-H~~~pG~qn~ 300 (328)
+...-|+++.+.|+++|+.||+|- |+ .|..++.
T Consensus 145 G~v~dl~~I~~la~~~gi~livD~t~a-~~~~~~~ 178 (397)
T PRK05939 145 TQVADLAGIGALCRERGLLYVVDNTMT-SPWLFRP 178 (397)
T ss_pred CCHHhHHHHHHHHHHcCCEEEEECCcc-cccccCc
Confidence 456779999999999999999998 45 5554443
No 246
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.18 E-value=1.4e+02 Score=30.60 Aligned_cols=48 Identities=25% Similarity=0.192 Sum_probs=33.6
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
+.++|++..++.|++.|||-+.-. + ...+.++|+.|+++|++|.+.+-
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~ln---d-----------~~n~~~~v~~ak~~G~~v~~~i~ 144 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALN---D-----------VRNLETAVKATKKAGGHAQVAIS 144 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecC---c-----------HHHHHHHHHHHHHcCCeEEEEEE
Confidence 456778888899999999877321 1 12367788888888888765543
No 247
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=26.06 E-value=1.1e+02 Score=30.01 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITISVTT 296 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~~~pG 296 (328)
|...-++++.+.|+++|+.|++|--. +-|
T Consensus 156 G~~~~~~~I~~l~~~~g~~livD~a~-a~g 184 (402)
T TIGR02006 156 GVIQDIAAIGEICRERKVFFHVDAAQ-SVG 184 (402)
T ss_pred eecccHHHHHHHHHHcCCEEEEEcch-hcC
Confidence 45566899999999999999999876 444
No 248
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=26.06 E-value=63 Score=31.15 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|=.-
T Consensus 166 ~~~~~~~i~~~a~~~~~~ii~De~y 190 (364)
T PRK07865 166 GVDHLRKVVAWARERGAVVASDECY 190 (364)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecch
Confidence 4688999999999999999999754
No 249
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=25.87 E-value=1.1e+02 Score=29.66 Aligned_cols=30 Identities=10% Similarity=-0.038 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
|...-++++.++|+++|+.|++|-.. ..|.
T Consensus 150 G~~~~~~~I~~l~~~~g~~vivD~~~-~~g~ 179 (379)
T TIGR03402 150 GTIFPIEEIGEIAKERGALFHTDAVQ-AVGK 179 (379)
T ss_pred eecccHHHHHHHHHHcCCEEEEECcc-cccc
Confidence 44444788999999999999999877 5553
No 250
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=25.77 E-value=61 Score=31.61 Aligned_cols=23 Identities=9% Similarity=-0.217 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.-++|+++.+.|++||+.+|+|=
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DE 216 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDE 216 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 45899999999999999999995
No 251
>PRK05957 aspartate aminotransferase; Provisional
Probab=25.76 E-value=59 Score=31.79 Aligned_cols=25 Identities=12% Similarity=-0.209 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|-.-
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y 202 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAY 202 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4678999999999999999999864
No 252
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.65 E-value=2.3e+02 Score=27.40 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCcHHHH----HHHHhcCCcEEEecc----ccccccCCCC-------CCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 228 TYIVEDDF----KFIAGNGLNAVRIPV----GWWMASDPTP-------PAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 228 t~ite~Df----~~ia~~G~N~VRiPv----~yw~~~~~~~-------~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.|++-+.+ +.|+..++|.+-+=+ +|..-...-| ...++ .-+.+.++++.|+++||.||.-+=
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~y--T~~di~elv~yA~~rgI~vIPEId- 89 (311)
T cd06570 13 HFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYY--TQEQIREVVAYARDRGIRVVPEID- 89 (311)
T ss_pred CCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCcc--CHHHHHHHHHHHHHcCCEEEEeec-
Confidence 45555554 456788999765544 2321111000 01122 468899999999999999998874
Q ss_pred CCCCCC
Q 020265 293 SVTTSQ 298 (328)
Q Consensus 293 ~~pG~q 298 (328)
+||-.
T Consensus 90 -~PGH~ 94 (311)
T cd06570 90 -VPGHA 94 (311)
T ss_pred -Cccch
Confidence 46644
No 253
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.58 E-value=1.1e+02 Score=29.88 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCcEEEeccc----cccccCCCCCCCCc---cccHHHHHHHHHHHHhCCCceEEee
Q 020265 233 DDFKFIAGNGLNAVRIPVG----WWMASDPTPPAPYV---GGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 233 ~Df~~ia~~G~N~VRiPv~----yw~~~~~~~~~p~~---~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
+-++.|++.|+|+|=|.|. .=.+....+...-. .....-++++++.++++|||+|==+
T Consensus 17 ~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 17 KLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred HHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEE
Confidence 4578899999999999983 11010011100000 1113568999999999999998533
No 254
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.57 E-value=1.5e+02 Score=28.37 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHhcCCcEEEeccc
Q 020265 234 DFKFIAGNGLNAVRIPVG 251 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~ 251 (328)
.++.+++.|++.|.|.+.
T Consensus 110 ~~~~L~~agl~~i~ISld 127 (331)
T PRK00164 110 RAAALKDAGLDRVNVSLD 127 (331)
T ss_pred HHHHHHHcCCCEEEEEec
Confidence 456667777777776663
No 255
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=25.54 E-value=82 Score=30.08 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=40.8
Q ss_pred CcHHHHHHHHhcCCcEEEecccc--ccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGW--WMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~y--w~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
...+|++...+.|++.|-+.++= .+.... ...-....++.+.++++.|+++|++|-+-+=
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~--~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKK--LKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH--hCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45689999889999999887642 111100 0011134688889999999999998887764
No 256
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.31 E-value=2e+02 Score=29.79 Aligned_cols=63 Identities=13% Similarity=-0.030 Sum_probs=44.2
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-|-+..+.+.++|++.||+=||-=..-........-..++..+.++.+.|+++++.||-|=+-
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi 339 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV 339 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 466888899999999999888642111111111111127999999999999999999988554
No 257
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=25.22 E-value=64 Score=30.76 Aligned_cols=25 Identities=8% Similarity=-0.310 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|---
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y 167 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAF 167 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECcc
Confidence 5789999999999999999999854
No 258
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=24.74 E-value=2.2e+02 Score=25.24 Aligned_cols=25 Identities=8% Similarity=-0.186 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHhCCC----ceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFF----PVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl----~VilDlH~ 292 (328)
..+..+.+++.++++++ .++||+=.
T Consensus 72 a~~eA~~f~~~~~~~~~~~~~~~~lD~E~ 100 (192)
T cd06522 72 AQAEARYFANTAKSLGLSKNTVMVADMED 100 (192)
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 45567777888887766 47899977
No 259
>PRK08960 hypothetical protein; Provisional
Probab=24.72 E-value=69 Score=31.19 Aligned_cols=23 Identities=13% Similarity=-0.286 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|+++|+.||+|=
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De 205 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDE 205 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEc
Confidence 47899999999999999999995
No 260
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=24.70 E-value=49 Score=28.54 Aligned_cols=20 Identities=25% Similarity=0.745 Sum_probs=13.8
Q ss_pred HHHHhcCCcEEEeccccccc
Q 020265 236 KFIAGNGLNAVRIPVGWWMA 255 (328)
Q Consensus 236 ~~ia~~G~N~VRiPv~yw~~ 255 (328)
+.|++.|++..|-|+||+.-
T Consensus 102 ~~L~~~g~eV~raPFGwyK~ 121 (138)
T PF08915_consen 102 ERLKSRGFEVYRAPFGWYKE 121 (138)
T ss_dssp HHHHHTT-EEEE--TTEEEE
T ss_pred HHHHhCCCeEEEeCCcccee
Confidence 45689999999999998754
No 261
>PRK09265 aminotransferase AlaT; Validated
Probab=24.65 E-value=65 Score=31.65 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+++++++|+++|+.||+|=
T Consensus 186 ~~~~~~~i~~~a~~~~~~ii~De 208 (404)
T PRK09265 186 SKELLEEIVEIARQHNLIIFADE 208 (404)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeh
Confidence 46889999999999999999994
No 262
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms]
Probab=24.30 E-value=2.8e+02 Score=24.36 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.0
Q ss_pred EEeecC-ccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-CCceEEeeccceeEee
Q 020265 114 HFRVFN-KQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-PNGFFLQAKTEELVTA 179 (328)
Q Consensus 114 ~lra~n-~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~nG~~v~a~~~~~l~A 179 (328)
.|-... |.|+.+.. ++.+..++..-..--.+++..-. -+.|+||+ .-+.||+++.-|.|.+
T Consensus 29 ~LY~~t~g~hLqi~p---~g~V~Gt~~~~s~~siLei~sv~--~GvV~IkGV~s~~YL~Mn~~G~Lyg 91 (155)
T KOG3885|consen 29 LLYCRNGGHFLRILP---DGTVDGTRDRSDQHTIFEIITVA--VGVVAIKGVESELYLAMNKEGKLYA 91 (155)
T ss_pred EEEEcCCCEEEEEcC---CCccccccccCCCceeEEEEEee--ecEEEEEEeeceeEEEECCCCcEec
Confidence 333444 88998876 44566666544445556665443 36899999 6899999987766653
No 263
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=24.29 E-value=65 Score=31.26 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|++||+.||+|-.-
T Consensus 182 ~~~~~~~i~~~a~~~~~~ii~De~y 206 (383)
T TIGR03540 182 PLKFFKELVEFAKEYNIIVCHDNAY 206 (383)
T ss_pred CHHHHHHHHHHHHHcCEEEEEecch
Confidence 5788999999999999999999866
No 264
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.91 E-value=68 Score=29.10 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=38.7
Q ss_pred CcHHHHHH----HHhcCCcEEEeccccccc--cCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 230 IVEDDFKF----IAGNGLNAVRIPVGWWMA--SDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 230 ite~Df~~----ia~~G~N~VRiPv~yw~~--~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..++|++. +++.|++.||+.++-... .... ... ....++.+.+++++|+++|+.|-+.+
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~-~~~-~~~~~~~~~~~v~~ak~~g~~v~~~~ 128 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNL-NKS-REEALERIEEAVKYAKELGYEVAFGC 128 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHT-CSH-HHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhh-cCC-HHHHHHHHHHHHHHHHhcCCceEeCc
Confidence 34566666 345999999998853221 0000 000 12358888999999999999997765
No 265
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=23.86 E-value=70 Score=30.90 Aligned_cols=23 Identities=9% Similarity=-0.091 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|+++++.||+|-
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De 181 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDE 181 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeC
Confidence 46889999999999999999994
No 266
>PLN00175 aminotransferase family protein; Provisional
Probab=23.82 E-value=72 Score=31.70 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|++|++.||+|-.-
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y 229 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVY 229 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4689999999999999999999755
No 267
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.64 E-value=1.9e+02 Score=26.57 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=37.3
Q ss_pred CcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 230 IVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 230 ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-.++.++.+++.|++.|=|..++..... |.. .-..++++-+.++++||.|. -++.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~-----~~~--~~~~~~~l~~~~~~~gl~v~-s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFA-----PDL--KAGGIKQIKALAQTYQMPII-GYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccc-----ccc--CchHHHHHHHHHHHcCCeEE-EecC
Confidence 4578899999999999998543321111 111 12467888889999999985 3543
No 268
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=23.40 E-value=45 Score=31.97 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCceEEeeCC
Q 020265 272 LDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 272 ld~~i~wa~~~gl~VilDlH~ 292 (328)
++.++..|++.||.|++|.|.
T Consensus 192 ~~d~L~ic~~~giP~VfD~hH 212 (275)
T PF03851_consen 192 VEDVLPICEKLGIPMVFDYHH 212 (275)
T ss_dssp HHHHHHHHHHHT--EEEEHHH
T ss_pred HHHHHHHHHHhCCCEEEEhHH
Confidence 788999999999999999997
No 269
>PRK07550 hypothetical protein; Provisional
Probab=23.32 E-value=73 Score=30.96 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|-.-
T Consensus 181 ~~~~~~~i~~~~~~~~~~iI~Dd~y 205 (386)
T PRK07550 181 PPELLHELYDLARRHGIALILDETY 205 (386)
T ss_pred CHHHHHHHHHHHHHcCeEEEEeccc
Confidence 4678999999999999999999854
No 270
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=23.19 E-value=1.3e+02 Score=29.76 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcEEEeccccccccCCCCCCCC-ccccHHHHHHHHHHHHhCCCceEEee
Q 020265 234 DFKFIAGNGLNAVRIPVGWWMASDPTPPAPY-VGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~-~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.++++|.+.|-+-+.|- +. .++- ....++.|.++.+.|+++||-+|+-+
T Consensus 111 sve~a~~~GAdAVk~lv~~~----~d-~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR----PD-EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC----CC-cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 36778999999999988443 21 1121 12368899999999999999999974
No 271
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=23.13 E-value=73 Score=30.99 Aligned_cols=24 Identities=8% Similarity=-0.187 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
.-++++++.+.|++||+.+|+|=-
T Consensus 210 ~~~~l~~l~~l~~~~~~~li~Dev 233 (413)
T cd00610 210 PPGYLKALRELCRKHGILLIADEV 233 (413)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc
Confidence 357899999999999999999953
No 272
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=23.08 E-value=76 Score=32.60 Aligned_cols=25 Identities=16% Similarity=-0.035 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
+.+.++++.+.|++|||.|++|--.
T Consensus 189 s~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 189 SMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccc
Confidence 4688999999999999999999855
No 273
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.02 E-value=2.4e+02 Score=25.87 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCcHHHHHHHH----hcCCcEEEecc--ccccccCCCCCCC-CccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 229 YIVEDDFKFIA----GNGLNAVRIPV--GWWMASDPTPPAP-YVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 229 ~ite~Df~~ia----~~G~N~VRiPv--~yw~~~~~~~~~p-~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++.++++.++ +.|+. +-+ +|. .+....+| ....+++++.++++.|++.|.++|+ +|.
T Consensus 41 ~~~~~~~~~l~~~~~~~gl~---ls~h~p~~--~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv-~h~ 105 (273)
T smart00518 41 RLSEETAEKFKEALKENNID---VSVHAPYL--INLASPDKEKVEKSIERLIDEIKRCEELGIKALV-FHP 105 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCC---EEEECCce--ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-Ecc
Confidence 47777888754 45664 333 232 12111122 2234789999999999999999766 787
No 274
>PRK07324 transaminase; Validated
Probab=23.00 E-value=74 Score=30.99 Aligned_cols=23 Identities=22% Similarity=-0.063 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+++++++|+++|+.||+|=
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEc
Confidence 46789999999999999999995
No 275
>PRK09028 cystathionine beta-lyase; Provisional
Probab=22.99 E-value=1.3e+02 Score=30.08 Aligned_cols=42 Identities=14% Similarity=-0.084 Sum_probs=30.6
Q ss_pred CCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCCCCCCC
Q 020265 260 PPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQDLTIM 303 (328)
Q Consensus 260 ~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~qn~~~~ 303 (328)
|.+|. +...-|+++++.|+++|+.||+|---..|=.|+..++
T Consensus 155 psNPt--g~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~ 196 (394)
T PRK09028 155 PGSIT--MEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEM 196 (394)
T ss_pred CCCCC--CcHHHHHHHHHHHHHcCCEEEEECCccccccCCcccc
Confidence 44563 4578899999999999999999955415545665544
No 276
>PLN02721 threonine aldolase
Probab=22.95 E-value=76 Score=29.98 Aligned_cols=23 Identities=17% Similarity=-0.077 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.++++.+.|+++|+.+|+|=
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~ 178 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDG 178 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEc
Confidence 46789999999999999999995
No 277
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=22.94 E-value=2.8e+02 Score=28.62 Aligned_cols=62 Identities=13% Similarity=-0.056 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEee
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDl 290 (328)
=.|.+..+.+.+.|++.|++=++-=..........+-..++.-+-++.+.|+++|+.||-|=
T Consensus 274 ~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG 335 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG 335 (475)
T ss_pred cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC
Confidence 36779999999999999998886211111111112111267778888899999999999773
No 278
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=22.93 E-value=56 Score=30.82 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
|...-++++.++|+++|+.||+|-=.
T Consensus 146 G~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 146 GDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCccCHHHHHHHHHHcCCEEEEEccc
Confidence 34455789999999999999999755
No 279
>PRK06348 aspartate aminotransferase; Provisional
Probab=22.92 E-value=76 Score=30.92 Aligned_cols=25 Identities=20% Similarity=-0.069 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|-.-
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y 204 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVY 204 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEeccc
Confidence 5789999999999999999999755
No 280
>PRK06108 aspartate aminotransferase; Provisional
Probab=22.89 E-value=77 Score=30.51 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+++++++|+++|+.||+|-.
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~ 199 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEV 199 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehh
Confidence 578899999999999999999954
No 281
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.64 E-value=72 Score=30.23 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHHHhCCCceE
Q 020265 267 GSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~Vi 287 (328)
.+++.+.++|..|++.||++|
T Consensus 93 ~aleiM~KaI~LA~dLGIRtI 113 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTI 113 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeE
Confidence 479999999999999999987
No 282
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=22.58 E-value=76 Score=31.00 Aligned_cols=23 Identities=13% Similarity=-0.216 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.-+++.++.++|++||+.+|+|=
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DE 224 (398)
T PRK03244 202 PAGYLAAAREITDRHGALLVLDE 224 (398)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 35789999999999999999994
No 283
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=22.57 E-value=76 Score=31.79 Aligned_cols=25 Identities=20% Similarity=-0.072 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.-+.+++++++|+++|+.||.|=--
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y 232 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVY 232 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 4678999999999999999999644
No 284
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=22.50 E-value=2.5e+02 Score=28.06 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccc-cccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCc
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVG-WWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFP 285 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~-yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~ 285 (328)
+-++++..+.+++.|+ .|=|.++ .-.+-|. .-|.. .+.++++-+.+++.+++++.
T Consensus 100 ~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~--~R~~~~GkgTfd~i~~~i~~L~~~~v~ 157 (378)
T COG0641 100 TLLNDEWAEFLAEHDF-LIGISIDGPEEIHDK--YRVTKSGKGTFDRVMKGLELLQAHGVD 157 (378)
T ss_pred cccCHHHHHHHHhcCc-eEEEeccCchHhccc--cccCCCCCccHHHHHHHHHHHHHcCCc
Confidence 3578888999999999 9999983 3322221 11222 24799999999999999866
No 285
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.35 E-value=1.4e+02 Score=30.01 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHh-cCCcEEEeccc-ccc-----ccCC-CCC--------CCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIAG-NGLNAVRIPVG-WWM-----ASDP-TPP--------APYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia~-~G~N~VRiPv~-yw~-----~~~~-~~~--------~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
-++.+++ .|+..+.+|+. -.. +... .+. .....|...-++++++.|+++|..|++|--.
T Consensus 127 pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 127 PWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred HHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 4777775 49999999985 111 1110 111 1123467778999999999999999999865
No 286
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=22.23 E-value=82 Score=30.83 Aligned_cols=25 Identities=16% Similarity=-0.164 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|++|++.||+|-.-
T Consensus 184 s~~~~~~l~~~~~~~~~~ii~D~~y 208 (391)
T PRK07309 184 SREQIKALADVLKKYDIFVISDEVY 208 (391)
T ss_pred CHHHHHHHHHHHHHcCcEEEEEccc
Confidence 4688999999999999999999876
No 287
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=22.22 E-value=1.9e+02 Score=28.87 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccc-cccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCce
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVG-WWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPV 286 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~-yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~V 286 (328)
+-+|++-.+.+++.|+ .|+|.++ .-..-+. .-+.. .+.++++-+.|+.++++|+.+
T Consensus 111 ~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~--~R~~~~g~gsf~~v~~~i~~l~~~gi~~ 169 (412)
T PRK13745 111 TLLTDEWCEFFRENNF-LVGVSIDGPQEFHDE--YRKNKMGKPSFVKVMKGINLLKKHGVEW 169 (412)
T ss_pred EeCCHHHHHHHHHcCe-EEEEEecCCHHHhhh--hcCCCCCCccHHHHHHHHHHHHHcCCCE
Confidence 4678888889999998 8888884 2111010 00111 135666666666666666654
No 288
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=22.21 E-value=76 Score=30.57 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+++++++|+++++.||+|-.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~ 183 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEA 183 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecc
Confidence 467899999999999999999975
No 289
>PRK08508 biotin synthase; Provisional
Probab=22.13 E-value=1.6e+02 Score=27.80 Aligned_cols=54 Identities=9% Similarity=-0.066 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc--cccHHHHHHHHHHHHhCCCce
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV--GGSLRALDNAFTWAGYAFFPV 286 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~--~~~~~~ld~~i~wa~~~gl~V 286 (328)
.+++++.++.|+++|++.+-+-+ .. ....-|-+ ...|+..-+.++.|++.||.|
T Consensus 98 G~~~~e~l~~Lk~aGld~~~~~l--Et---~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 98 GTASVEQLKELKKAGIFSYNHNL--ET---SKEFFPKICTTHTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred CCCCHHHHHHHHHcCCCEEcccc--cc---hHHHhcCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 56789999999999998765532 11 00000111 135777777888899998876
No 290
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=22.13 E-value=79 Score=30.57 Aligned_cols=23 Identities=13% Similarity=-0.214 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.-++|+++.+.|++||+.+|+|=
T Consensus 186 ~~~~l~~l~~l~~~~~~~lI~DE 208 (377)
T PRK02936 186 DPAFLQEVQTLCKKFGALLIIDE 208 (377)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 35899999999999999999993
No 291
>PRK09082 methionine aminotransferase; Validated
Probab=22.10 E-value=71 Score=31.15 Aligned_cols=25 Identities=16% Similarity=-0.020 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|=--
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y 205 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVY 205 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhh
Confidence 3588999999999999999998643
No 292
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=21.99 E-value=80 Score=30.62 Aligned_cols=23 Identities=9% Similarity=-0.197 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
.-++++++.++|++||+.+|+|=
T Consensus 201 ~~~~l~~l~~l~~~~~~~lI~DE 223 (396)
T PRK02627 201 DKEYLQALRELCDENGILLILDE 223 (396)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 35689999999999999999995
No 293
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=21.98 E-value=75 Score=26.62 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.2
Q ss_pred cCCCcHHHHHHHHhcCCcEE
Q 020265 227 STYIVEDDFKFIAGNGLNAV 246 (328)
Q Consensus 227 ~t~ite~Df~~ia~~G~N~V 246 (328)
..-+|++|++.|++.|+.+|
T Consensus 12 s~qlt~~d~~~L~~~GiktV 31 (135)
T TIGR01244 12 SPQLTKADAAQAAQLGFKTV 31 (135)
T ss_pred cCCCCHHHHHHHHHCCCcEE
Confidence 34578899999998888877
No 294
>PLN02651 cysteine desulfurase
Probab=21.96 E-value=1.3e+02 Score=28.94 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITISVTT 296 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~~~pG 296 (328)
|...-++++.+.|+++|+.+++|-=. ..|
T Consensus 152 G~~~~l~~I~~~~~~~g~~~~vD~a~-~~g 180 (364)
T PLN02651 152 GVIQPVEEIGELCREKKVLFHTDAAQ-AVG 180 (364)
T ss_pred eecccHHHHHHHHHHcCCEEEEEcch-hhC
Confidence 45556889999999999999999776 444
No 295
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=21.94 E-value=4.7e+02 Score=21.76 Aligned_cols=71 Identities=4% Similarity=0.095 Sum_probs=46.5
Q ss_pred cccceEEEeeccccEEEeec-CccEEEeecCCCCceeeecCCCCCCCCceEEEEccCCCceeEEEc-C-Cc-eEEeeccc
Q 020265 99 GWETFKLWRINETNFHFRVF-NKQFIGLDTNGNGIDIVAESNTPRSSETFEIVRNSNDLSRVRIKA-P-NG-FFLQAKTE 174 (328)
Q Consensus 99 hWEtF~l~~ite~d~~lra~-n~~~v~a~~~~g~~~l~A~~~~~g~wE~F~~~~~~~~~~~v~lra-~-nG-~~v~a~~~ 174 (328)
....|++.-+..+.|.||.. .++|+|.+. -|.|-+... +...+.|.-....++ -..+.+ . .+ -||..+..
T Consensus 32 ~~~ile~~s~~~g~V~ik~~~s~~YLCmn~---~G~ly~s~~-~~~dC~F~E~~~~n~--y~~y~S~~~~~~~ylal~~~ 105 (126)
T smart00442 32 SFTILEIIAVAVGVVAIKGVASCRYLCMNK---CGKLYGSKN-FTEDCVFREEMEENG--YNTYASAKYRKRWYVALNKK 105 (126)
T ss_pred cceEEEEEeccCCEEEEEEcccceEEEECC---CCCEEEccc-CCCCcEEEEEeccCC--eEEEEEcccCCceEEEECCC
Confidence 45677777777788999997 899999987 455666555 778899955444322 223333 2 33 56666544
Q ss_pred e
Q 020265 175 E 175 (328)
Q Consensus 175 ~ 175 (328)
|
T Consensus 106 G 106 (126)
T smart00442 106 G 106 (126)
T ss_pred C
Confidence 3
No 296
>PRK08912 hypothetical protein; Provisional
Probab=21.87 E-value=71 Score=31.07 Aligned_cols=25 Identities=8% Similarity=-0.192 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|-.-
T Consensus 177 s~~~~~~i~~~~~~~~~~ii~De~y 201 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAICDEVW 201 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEEEhhhh
Confidence 4678999999999999999999653
No 297
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.75 E-value=3.1e+02 Score=25.01 Aligned_cols=21 Identities=24% Similarity=0.042 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHHHhCCCceEE
Q 020265 268 SLRALDNAFTWAGYAFFPVPS 288 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~Vil 288 (328)
.-+.|.++.+.++++|++|+|
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 468889999999999999986
No 298
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=21.73 E-value=1.4e+02 Score=28.80 Aligned_cols=30 Identities=7% Similarity=-0.096 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCCCCCCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITISVTTS 297 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~ 297 (328)
|...-++++.++|+++|+.+++|--. ..|.
T Consensus 154 G~~~~~~~I~~la~~~g~~~ivD~a~-~~g~ 183 (382)
T TIGR03403 154 GMIFPIKEIGEICKERGVLFHTDAVQ-AIGK 183 (382)
T ss_pred ccccCHHHHHHHHHHcCCEEEEechh-hcCC
Confidence 44444788999999999999999876 5554
No 299
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=21.72 E-value=95 Score=31.71 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHhcCCcEEE-eccccccccCCCCCCCCcc--ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 237 FIAGNGLNAVR-IPVGWWMASDPTPPAPYVG--GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 237 ~ia~~G~N~VR-iPv~yw~~~~~~~~~p~~~--~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.+.+.|+|..= .||.|..-.+. .-|... ..|+|+|+++.|-.++|+.|-.+.|+
T Consensus 116 ~~~a~g~~a~egg~isy~~py~k--~~~Le~si~~wqy~~rl~~~y~e~gv~in~E~fg 172 (428)
T cd00245 116 IAIASGFDATEGGPISYNLPYSK--NVPLEKSIENWQYCDRLVGFYEENGVPINREPFG 172 (428)
T ss_pred HHHHhCcccccccceeeccccCC--CCCHHHHHHHHHHHHHHHHHHHhcCceecccCCc
Confidence 34577888776 89988753331 124422 26999999999999999999999999
No 300
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.65 E-value=1.1e+02 Score=29.99 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=39.0
Q ss_pred HHHHHH-hcCCcEEEeccccccccC------CCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 234 DFKFIA-GNGLNAVRIPVGWWMASD------PTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 234 Df~~ia-~~G~N~VRiPv~yw~~~~------~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.++.++ ..|+++.-+.+.+-.+.+ ....+|...-.......+.+.|+++|+++||.=|+
T Consensus 104 n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~ 169 (343)
T TIGR03573 104 NLNNLIKKLGFDLHTITINPETFRKLQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGEN 169 (343)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCC
Confidence 455565 489999998886432211 01234544323344566789999999999999888
No 301
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=21.61 E-value=2.7e+02 Score=27.60 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=40.2
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCccccHHHHHHHHHHHHhCCCceEEeeCCCCCCCC
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYVGGSLRALDNAFTWAGYAFFPVPSDITISVTTSQ 298 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~~~~~~~ld~~i~wa~~~gl~VilDlH~~~pG~q 298 (328)
...+++-++.|.++|++-||+=.+-| .+ ...+.--+.+.-|+++||-|=+-+-+ +||--
T Consensus 120 ~~~~~e~l~~L~eAGLDEIRfHp~~~-------~~----~~~e~~i~~l~~A~~~g~dvG~EiPa-ipg~e 178 (353)
T COG2108 120 ILATEEALKALAEAGLDEIRFHPPRP-------GS----KSSEKYIENLKIAKKYGMDVGVEIPA-IPGEE 178 (353)
T ss_pred ccCCHHHHHHHHhCCCCeEEecCCCc-------cc----cccHHHHHHHHHHHHhCccceeecCC-CcchH
Confidence 46889999999999999999755411 11 12334445566667777777777777 77654
No 302
>PRK07777 aminotransferase; Validated
Probab=21.60 E-value=81 Score=30.65 Aligned_cols=25 Identities=16% Similarity=-0.083 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++++.||+|-.-
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y 201 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVY 201 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccc
Confidence 3578999999999999999999654
No 303
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=21.59 E-value=1.4e+02 Score=29.35 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=39.0
Q ss_pred CCcHHHHHHHHhcCCcEEEeccccccccCCCCCCCCc----cccHHHHHHHHHHHHhCCCc-eEEeeCCCCCC
Q 020265 229 YIVEDDFKFIAGNGLNAVRIPVGWWMASDPTPPAPYV----GGSLRALDNAFTWAGYAFFP-VPSDITISVTT 296 (328)
Q Consensus 229 ~ite~Df~~ia~~G~N~VRiPv~yw~~~~~~~~~p~~----~~~~~~ld~~i~wa~~~gl~-VilDlH~~~pG 296 (328)
+..+...+.++++|++-|+|.+.- .+ ++-|. .+.++.+-+.|+.|.+.|+. |=||+=- ++|
T Consensus 98 ~~L~~~a~~Lk~AGl~rVNVSLDs---ld---~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv-~kg 163 (322)
T COG2896 98 VLLARRAADLKEAGLDRVNVSLDS---LD---PEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVL-MKG 163 (322)
T ss_pred hhHHHHHHHHHHcCCcEEEeeccc---CC---HHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEE-ecC
Confidence 334566788999999999999841 11 11221 12466666777777777775 6666655 544
No 304
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=21.57 E-value=76 Score=31.39 Aligned_cols=22 Identities=9% Similarity=-0.194 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEe
Q 020265 268 SLRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilD 289 (328)
.-++|.++.+.|++||+.+|+|
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~D 223 (406)
T PRK12381 202 DKAFLQGLRELCDRHNALLIFD 223 (406)
T ss_pred CHHHHHHHHHHHHHcCCEEEEc
Confidence 4689999999999999999998
No 305
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=21.52 E-value=2.4e+02 Score=28.66 Aligned_cols=58 Identities=17% Similarity=0.036 Sum_probs=38.5
Q ss_pred HHHHHHhcCCcEEEecccccc------------------ccCCCCCCCCc-cccHHHHHHHHHHHHhCCCceEEeeC
Q 020265 234 DFKFIAGNGLNAVRIPVGWWM------------------ASDPTPPAPYV-GGSLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 234 Df~~ia~~G~N~VRiPv~yw~------------------~~~~~~~~p~~-~~~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
-+.-+...|++.+-||++--- +..++--+|.- .-+.++=.++++||++|++.||=|=.
T Consensus 192 ~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 192 ALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred HHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 466677889999999994110 00111112320 11689999999999999999998743
No 306
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=21.46 E-value=69 Score=26.20 Aligned_cols=21 Identities=14% Similarity=-0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCceEEeeC
Q 020265 271 ALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 271 ~ld~~i~wa~~~gl~VilDlH 291 (328)
.++++-+..+.||..||||+-
T Consensus 88 v~~kv~eY~e~~G~~Vii~t~ 108 (109)
T PF15647_consen 88 VHDKVKEYIERYGGKVIIDTK 108 (109)
T ss_pred ccHHHHHHHHHcCcEEEecCC
Confidence 578889999999999999973
No 307
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=21.41 E-value=1.5e+02 Score=30.95 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhC--CCceEEee
Q 020265 268 SLRALDNAFTWAGYA--FFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~--gl~VilDl 290 (328)
.-+.+++++++|+++ ++.||.|=
T Consensus 258 s~e~l~~I~~ia~~~~~~l~II~DE 282 (521)
T TIGR03801 258 SDESIEKIVDIVANDRPDLMILTDD 282 (521)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEECC
Confidence 578999999999987 89999885
No 308
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=21.37 E-value=2.2e+02 Score=27.56 Aligned_cols=57 Identities=14% Similarity=-0.030 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcCCcEEEeccccc-cccCCCCCCCC--ccccHHHHHHHHHHHHhCCCceE
Q 020265 228 TYIVEDDFKFIAGNGLNAVRIPVGWW-MASDPTPPAPY--VGGSLRALDNAFTWAGYAFFPVP 287 (328)
Q Consensus 228 t~ite~Df~~ia~~G~N~VRiPv~yw-~~~~~~~~~p~--~~~~~~~ld~~i~wa~~~gl~Vi 287 (328)
+.++++-++.+++.|+ .|.|.++=. ..-+. .-++ ..+.++.+-+.|+.++++|+.+.
T Consensus 102 ~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~--~R~~~~g~~~f~~v~~~i~~l~~~~~~~~ 161 (370)
T PRK13758 102 TLIDESWAKFLSENKF-LVGLSMDGPKEIHNL--NRKDCCGLDTFSKVERAAELFKKYKVEFN 161 (370)
T ss_pred EecCHHHHHHHHHcCc-eEEEeecCCHHHhcc--ccCCCCCCccHHHHHHHHHHHHHhCCCce
Confidence 4677777888888886 788877421 10010 0011 01345555555665555554433
No 309
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=21.33 E-value=59 Score=31.33 Aligned_cols=26 Identities=19% Similarity=0.013 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
|....+++++++|+++|+.||+|==-
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~ 213 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSH 213 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 34566899999999999999999654
No 310
>PLN02187 rooty/superroot1
Probab=21.30 E-value=82 Score=31.97 Aligned_cols=24 Identities=25% Similarity=-0.064 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH 291 (328)
..+.+.+++++|+++|+.||.|=-
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~ 245 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEV 245 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecc
Confidence 468899999999999999999963
No 311
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=21.19 E-value=1.1e+02 Score=30.40 Aligned_cols=24 Identities=17% Similarity=-0.152 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhC-CCceEEeeC
Q 020265 268 SLRALDNAFTWAGYA-FFPVPSDIT 291 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~-gl~VilDlH 291 (328)
..+++++++++|+++ ++.||.|=+
T Consensus 230 s~~~~~~l~~la~~~~~~~ii~De~ 254 (431)
T PRK15481 230 SARRAAALRNLLARYPQVLVIIDDH 254 (431)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCc
Confidence 578899999999999 999999943
No 312
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=21.17 E-value=88 Score=31.92 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.|+++.+.|++||+.||+|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 47889999999999999999996
No 313
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=20.97 E-value=84 Score=30.12 Aligned_cols=25 Identities=12% Similarity=-0.087 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||.|=.-
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 4678999999999999999999865
No 314
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=20.95 E-value=1e+02 Score=29.19 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
.+..|.+.+++++++|+.||+|+=-
T Consensus 71 gi~~l~~~~~~~~~~g~~VilD~K~ 95 (261)
T TIGR02127 71 GFKALEEVIAHARSLGLPVLADVKR 95 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeec
Confidence 5788999999999999999999843
No 315
>PRK06225 aspartate aminotransferase; Provisional
Probab=20.92 E-value=85 Score=30.42 Aligned_cols=23 Identities=9% Similarity=-0.179 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|+++|+.+|+|-
T Consensus 175 ~~~~~~~i~~~a~~~~~~ii~De 197 (380)
T PRK06225 175 TEEEIKEFAEIARDNDAFLLHDC 197 (380)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeh
Confidence 36789999999999999999994
No 316
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=20.85 E-value=86 Score=30.41 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|++|++.||+|---
T Consensus 184 ~~~~~~~l~~~~~~~~~~ii~De~y 208 (385)
T PRK09276 184 DLEFFEEVVDFAKKYDIIVCHDAAY 208 (385)
T ss_pred CHHHHHHHHHHHHHCCcEEEEecch
Confidence 4688999999999999999999755
No 317
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=20.71 E-value=88 Score=30.61 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+++++++|+++|+.||+|=--
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y 210 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIY 210 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhh
Confidence 4688999999999999999999643
No 318
>PLN00144 acetylornithine transaminase
Probab=20.63 E-value=88 Score=30.83 Aligned_cols=21 Identities=14% Similarity=-0.168 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCceEEe
Q 020265 269 LRALDNAFTWAGYAFFPVPSD 289 (328)
Q Consensus 269 ~~~ld~~i~wa~~~gl~VilD 289 (328)
-++++++.++|++||+.+|+|
T Consensus 187 ~~~~~~l~~l~~~~g~llI~D 207 (382)
T PLN00144 187 KEFLQGLRALCDEAGALLVFD 207 (382)
T ss_pred HHHHHHHHHHHHHcCCEEEEe
Confidence 478999999999999999998
No 319
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.58 E-value=3e+02 Score=25.45 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 267 GSLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 267 ~~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..++++.++++.|++.|.+.++ +|.
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~-~~~ 106 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLV-FHP 106 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ECC
Confidence 3689999999999999999765 566
No 320
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=20.50 E-value=88 Score=30.88 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITI 292 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~ 292 (328)
..+.+.+++++|+++|+.||+|=.-
T Consensus 195 s~~~~~~l~~~a~~~~~~ii~De~y 219 (412)
T PTZ00433 195 SRKHVEDIIRLCEELRLPLISDEIY 219 (412)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeccc
Confidence 4688999999999999999999755
No 321
>PRK07337 aminotransferase; Validated
Probab=20.45 E-value=95 Score=30.19 Aligned_cols=23 Identities=9% Similarity=-0.307 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.+.+++++|+++|+.||+|=
T Consensus 181 ~~~~~~~i~~~a~~~~~~ii~De 203 (388)
T PRK07337 181 APDELRRIVEAVRARGGFTIVDE 203 (388)
T ss_pred CHHHHHHHHHHHHHCCCEEEEec
Confidence 47889999999999999999993
No 322
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase. In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This model represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate.
Probab=20.41 E-value=1.1e+02 Score=28.91 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=20.0
Q ss_pred HHHHHHHHHH-HhCCCceEEeeCCCCCCC
Q 020265 270 RALDNAFTWA-GYAFFPVPSDITISVTTS 297 (328)
Q Consensus 270 ~~ld~~i~wa-~~~gl~VilDlH~~~pG~ 297 (328)
+.|.++++.. .++|.-|+||+|+ .|-.
T Consensus 125 ~al~~~L~~~~~~~g~~~liD~HS-m~s~ 152 (263)
T TIGR02017 125 AALQAEIERLRAQHGYAVLYDAHS-IRSV 152 (263)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecc-CCcc
Confidence 4566666555 6889999999998 7653
No 323
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=20.10 E-value=92 Score=29.21 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHhCCCceEEee
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDI 290 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDl 290 (328)
..+.|+++++.|+++|+.||+|=
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDe 166 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDG 166 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeech
Confidence 46889999999999999999993
No 324
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.09 E-value=2.5e+02 Score=27.48 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHhCCCceEEeeCCCCCCCC
Q 020265 268 SLRALDNAFTWAGYAFFPVPSDITISVTTSQ 298 (328)
Q Consensus 268 ~~~~ld~~i~wa~~~gl~VilDlH~~~pG~q 298 (328)
..+.+..+|+.|+++||.||..+= +||-.
T Consensus 68 T~~di~eiv~yA~~rgI~vIPEID--~PGH~ 96 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPEID--TPGHT 96 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecc--Cchhh
Confidence 478999999999999999998872 56644
No 325
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=20.06 E-value=92 Score=30.44 Aligned_cols=23 Identities=4% Similarity=-0.192 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCceEEeeC
Q 020265 269 LRALDNAFTWAGYAFFPVPSDIT 291 (328)
Q Consensus 269 ~~~ld~~i~wa~~~gl~VilDlH 291 (328)
-++|+++.+.|++||+.+|+|==
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv 229 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEI 229 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEech
Confidence 46799999999999999999943
Done!