BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020266
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 238 bits (607), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 197/327 (60%), Gaps = 9/327 (2%)
Query: 6 AAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
+ + VCVTGASG+I SWLV LL RGYTV+A+VRDP + KK +HLL L A L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 66 KANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIK 125
KA+L +EGSFD + GC GV H A+P ++KDP+ E++ P ++G L ++ SCA +++
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVR 121
Query: 126 RVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSEL--W-YPLSKTLAEDAAWKFA 182
R+V TSS A +N + + P V DE+ +SD E C+ ++ W Y +SKTLAE AAWK+A
Sbjct: 122 RLVFTSS-AGTVNIQEHQLP--VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYA 178
Query: 183 KEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTF--GWVNVKDVANAH 240
KE +ID +TI P +V+GP + ++ S LS I G + + ++ +V++ D+ NAH
Sbjct: 179 KENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAH 238
Query: 241 IQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKEKVK 300
I FE P A GRY ++ ++RE YP + +P + ++ + +K+
Sbjct: 239 IYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLT 298
Query: 301 NLGIEF-IPVEVSLKETIESLKEKGFV 326
+LG EF +E +++ + KG +
Sbjct: 299 DLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 187/330 (56%), Gaps = 16/330 (4%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K CV G +G++AS LVKLLL +GY V +VRDP++ KK HLL L + L++F+A+L
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADL 68
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+E SF++ + GCD V H A+P + ++DP+ +++ PA++G +NV+ +C + S+KRV+L
Sbjct: 69 TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE--LW-YPLSKTLAEDAAWKFAKEKS 186
TSS AAV + +VVDE ++D E ++ W YP SKTLAE AAWKFA+E +
Sbjct: 129 TSSAAAV-TINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENN 187
Query: 187 IDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGW---------VNVKDVA 237
IDL+T+ P ++ G L + +S +SLI G + N G +V+DV
Sbjct: 188 IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVC 247
Query: 238 NAHIQAFEVPSANGRYCLVERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVPTYQVLKE 297
AHI E SA+GRY + E+ + + YP +++P D P + E
Sbjct: 248 RAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK-SKLIISSE 306
Query: 298 KVKNLGIEF-IPVEVSLKETIESLKEKGFV 326
K+ G F +E E++E K KG +
Sbjct: 307 KLVKEGFSFKYGIEEIYDESVEYFKAKGLL 336
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 169/327 (51%), Gaps = 20/327 (6%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVR-DPNDPKKTRHLLALDGASERLQLFKANLL 70
VCVTG +G++ SW++K LL GY+V ++R DP + L L GASE+L F A+L
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 71 EEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLT 130
SF + ++GC G+ HTASP +P+ + V G L +L +C ++KR + T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 131 SSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELW---YPLSKTLAEDAAWKFAKEKSI 187
SS +AV GK + V+DE+ +SD ++ + + + Y +SKTLAE A +F ++ I
Sbjct: 124 SSGSAVSFNGKDKD---VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVT-FGWVNVKDVANAHIQAFEV 246
D+VT+ ++G + P L S L L+ G + VT F V+V DVA AHI E
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLEN 240
Query: 247 PSANGRYCLVERVSHYSEIVNIIRELYPAFQ------LPEKCADDKPHVPTYQVLKEKVK 300
GRY + E+ ++ YP +Q L E P + T +K+
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNT-----KKLV 295
Query: 301 NLGIEF-IPVEVSLKETIESLKEKGFV 326
+ G +F +E + I+ KEKG++
Sbjct: 296 DAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 28/333 (8%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
G +V VTGA+G++AS +V+ LL GY V+ + R + + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
+L++G++D ++ G GV H AS K E++ PA+ GTLN L + A PS+KR V
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 129 LTSSMAAVLNTGKPRTPDVVVDE-TWFSD--------PEVCKQSELW-YPLSKTLAEDAA 178
LTSS + L KP + +DE +W + PE Q LW Y SKT AE AA
Sbjct: 129 LTSSTVSAL-IPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 179 WKFAKEKS--IDLVTINPAMVIGPLLQPTLNTSAAA--VLSLIKGAQTYPNVTFG----W 230
WKF E L + P IG + P + + + ++SL G + P + +
Sbjct: 188 WKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNG-EVSPALALMPPQYY 246
Query: 231 VNVKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYPAFQLPEKCADDKPHV 289
V+ D+ H+ +P R ++ ++ R+LYP+ P D +
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDL 306
Query: 290 PTYQVLK--EKVKNLGIEFIPVEVSLKETIESL 320
+ E +K+LG P S++E+I+ L
Sbjct: 307 SKFDTAPSLEILKSLG---RPGWRSIEESIKDL 336
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 148/332 (44%), Gaps = 26/332 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKAN 68
G +V VTGA+G++AS +V+ LL GY V+ + R + + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVED 70
Query: 69 LLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVV 128
L++G++D ++ G GV H AS K E++ PA+ GTLN L + A PS+KR V
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFV 128
Query: 129 LTSSMAAVLNTGKPRTPDVVVDE-TWFSD--------PEVCKQSELW-YPLSKTLAEDAA 178
LTSS + L KP + +DE +W + PE Q LW Y SKT AE AA
Sbjct: 129 LTSSTVSAL-IPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 179 WKFAKEKS--IDLVTINPAMVIGPLLQP-TLNTSAAAVLSLIKGAQTYPNVTFG----WV 231
WKF E L + P IG + P T + S + + + P + +V
Sbjct: 188 WKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQYYV 247
Query: 232 NVKDVANAHIQAFEVPSANGRYCL-VERVSHYSEIVNIIRELYPAFQLPEKCADDKPHVP 290
+ D+ H+ +P R ++ ++ R+LYP+ P D +
Sbjct: 248 SAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLS 307
Query: 291 TYQVLK--EKVKNLGIEFIPVEVSLKETIESL 320
+ E +K+LG P S++E+I+ L
Sbjct: 308 KFDTAPSLEILKSLG---RPGWRSIEESIKDL 336
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 34/238 (14%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + + GASG++ S L+ L+RG+ V A VR P K +E L++ KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADV 55
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
S D + + C G S F +P ++ D +K L +++ K + R +
Sbjct: 56 ---SSLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKK-AGVNRFLX 109
Query: 130 TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDL 189
++ R D + E P K L E KEK ID
Sbjct: 110 VGGAGSLFIAPGLRLXD------------SGEVPENILPGVKALGEFYLNFLXKEKEIDW 157
Query: 190 VTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFGWVNVKDVANAHIQAFEVP 247
V +PA +P + T L K V ++V+D A A I E P
Sbjct: 158 VFFSPAAD----XRPGVRTGR---YRLGKDDXIVDIVGNSHISVEDYAAAXIDELEHP 208
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 139/338 (41%), Gaps = 63/338 (18%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K V +TG G I S + +LLL RG V D + HL L + ++
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGI--DNFATGRREHL----KDHPNLTFVEGSI 75
Query: 70 LEEGSFDSIVDGC--DGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + ++ D V HTA+ Y D D + L V G+ NV+ + AK ++ R
Sbjct: 76 ADHALVNQLIGDLQPDAVVHTAAS-YKDPDDWYNDTLTNCVGGS-NVVQA-AKKNNVGRF 132
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
V + A+ KP V +D P S Y +SK+ ED + + +
Sbjct: 133 VYFQT--ALCYGVKPIQQPVRLDH-----PRNPANSS--YAISKSANED----YLEYSGL 179
Query: 188 DLVTINPAMVIGPLLQPTLNTSAAAVL---SLIKGAQTY-PNVTFGWVNVKDVANAHIQA 243
D VT A V+GP N S + L +G + + +V VKD+A A ++A
Sbjct: 180 DFVTFRLANVVGP-----RNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRA 234
Query: 244 FEVPSANGRYCLVERVSHYSEIVNI-IREL------------YPAFQLPEKCADDKPHV- 289
+ +G Y H+S ++ I+EL YP ++ E DD P +
Sbjct: 235 VD-GVGHGAY-------HFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSIL 286
Query: 290 --PTYQVLKEKVKNLG-IEFIPVEVSLKETIESLKEKG 324
P+ +++ G IEF P++ ++ + +E G
Sbjct: 287 LDPS-----RTIQDFGKIEFTPLKETVAAAVAYFREYG 319
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 114/307 (37%), Gaps = 38/307 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGY----TVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTG +G+I S V+ LL+ Y + V D R LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELL-DPAVKGTLNVLNSCAKFPSIKR 126
++ + G + G D + H A+ + D + + V+GT +L CA + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 127 VVL--TSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
VV T+ + +++G +W + S Y SK ++ A + +
Sbjct: 122 VVHVSTNQVYGSIDSG-----------SWTESSPLEPNSP--YAASKAGSDLVARAYHRT 168
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-----WVNVKDVANA 239
+D+ GP P V +L+ G T P G WV+ D
Sbjct: 169 YGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGG-TLPLYGDGANVREWVHTDD---- 222
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVN------IIRELYPAFQLPEKCADDKPHVPTYQ 293
H + + A GR + + E+ N ++ L + K AD K H Y
Sbjct: 223 HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYS 282
Query: 294 VLKEKVK 300
+ K++
Sbjct: 283 LDGGKIE 289
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 91/237 (38%), Gaps = 51/237 (21%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
K + +TG +G++ S L L+ G+ V +V D + R++ G E +L ++
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIG-HENFELINHDV 62
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYHDAKDPQ-----VELLDPAVKGTLNVLNSCAKFPSI 124
+E + D + H ASP A P ++ L GTLN+L + +
Sbjct: 63 VEPLYIE-----VDQIYHLASP----ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA- 112
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSE-LW-----------YPLSKT 172
R++L S+ + DPEV QSE W Y K
Sbjct: 113 -RLLLASTSEV------------------YGDPEVHPQSEDYWGHVNPIGPRACYDEGKR 153
Query: 173 LAEDAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG 229
+AE + + K++ +++ GP + +N +++ Q P +G
Sbjct: 154 VAETMCYAYMKQEGVEVRVARIFNTFGPRMH--MNDGRVVSNFILQALQGEPLTVYG 208
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 25/179 (13%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLEEG 73
VTGA+G + S + L + + V+ S ++ L A ++ +L +
Sbjct: 7 VTGAAGGVGSAIRPHLGTLAHEVRLS-----------DIVDLGAAEAHEEIVACDLADAQ 55
Query: 74 SFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVLTSSM 133
+ +V CDG+ H + P ++L + G N L A+ R+V SS
Sbjct: 56 AVHDLVKDCDGIIHLGGV---SVERPWNDILQANIIGAYN-LYEAARNLGKPRIVFASSN 111
Query: 134 AAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSIDLVTI 192
+ PRT + D EV ++ + Y LSK ED A + + I+ + I
Sbjct: 112 HTI--GYYPRTTRI--------DTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNI 160
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 114/308 (37%), Gaps = 38/308 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGY----TVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+ VTG +G+I S V+ LL+ Y + V D R LA A RL+
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELL-DPAVKGTLNVLNSCAKFPSIKR 126
++ + G + G D + H A+ + D + + V+GT +L CA + R
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGVGR 121
Query: 127 VVLTSS--MAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
VV S+ + +++G +W + S Y SK ++ A + +
Sbjct: 122 VVHVSTDEVYGSIDSG-----------SWTESSPLEPNSP--YAASKAGSDLVARAYHRT 168
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTYPNVTFG-----WVNVKDVANA 239
+D+ GP P V +L+ G T P G WV+ D
Sbjct: 169 YGLDVRITRCCNNYGPYQHPE-KLIPLFVTNLLDGG-TLPLYGDGANVREWVHTDD---- 222
Query: 240 HIQAFEVPSANGRYCLVERVSHYSEIVN------IIRELYPAFQLPEKCADDKPHVPTYQ 293
H + + A GR + + E+ N ++ L + K AD K H Y
Sbjct: 223 HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYS 282
Query: 294 VLKEKVKN 301
+ K++
Sbjct: 283 LDGGKIER 290
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ + +TG +G V+ +L K V ++ K++ +A++ R++ F ++
Sbjct: 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSE--MAMEFNDPRMRFFIGDV 79
Query: 70 LEEGSFDSIVDGCDGVCHTASPFYH--DAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + ++G D +C A+ H A+ +E + + G NV+N+C K + +
Sbjct: 80 RDLERLNYALEGVD-ICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVI 138
Query: 128 VLTSSMAA 135
L++ AA
Sbjct: 139 ALSTDKAA 146
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 29/184 (15%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + VTGA+G + + + L ++ + P DP A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP-----------AGPNEECVQC 50
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+L + + +++V GCDG+ H + P ++L + G N L A+ R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYN-LYEAARAHGQPRI 106
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAW----KFAK 183
V SS + P+T + P+V + + Y +SK E+ A KF +
Sbjct: 107 VFASSNHTI--GYYPQTERL--------GPDVPARPDGLYGVSKCFGENLARMYFDKFGQ 156
Query: 184 EKSI 187
E ++
Sbjct: 157 ETAL 160
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKAS 39
V VTGA+G + S V L RGYTV+AS
Sbjct: 153 VLVTGATGGVGSLAVSXLAKRGYTVEAS 180
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+GK +TG G ++L KLLL +GY V + R + R L G +++
Sbjct: 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR--LKELGIENDVKIIHM 59
Query: 68 NLLEEGSFDSIVDGCDGV 85
+LLE F +I+ + V
Sbjct: 60 DLLE---FSNIIRTIEKV 74
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLA-LDG--ASERLQLFKANL- 69
+TGA+G++ ++L++ L + + +R N+ L+ L+ + E +++ +N+
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIE 214
Query: 70 LEEGSFDSIVD-----GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ G F+ + D D + H + H D + E ++ V+GT++V+ + +
Sbjct: 215 VIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQHHA- 271
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
R++ S+++ D+ ++ FS+ +V K L P +++
Sbjct: 272 -RLIYVSTISV------GTYFDIDTEDVTFSEADVYKGQLLTSPYTRS 312
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 58/260 (22%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVK-----ASVRDPNDPKKTRHLLALDGASERLQLFK 66
V VTG +G+I S +V+ LL+RG V A+ + N PK + F+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKG-------------VPFFR 49
Query: 67 ANLLEEGSFDSIVDGCDGVCHTASPFY--HDAKDP--QVELLDPAV------KGTLNVLN 116
+L ++ +G + P + H A +V + DP + G LN+L
Sbjct: 50 VDLRDK-------EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLE 102
Query: 117 SCAKFPSIKRVVLTSSMAAVLNTGKPRTPDV-VVDETWFSDPEVCKQSELWYPLSKTLAE 175
+C ++ ++++V S+ A+ P+ +ETW P+ Y SK E
Sbjct: 103 ACRQY-GVEKLVFASTGGAIYG----EVPEGERAEETWPPRPKSP------YAASKAAFE 151
Query: 176 DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLS--LIKG--AQTYPNVTFG-- 229
+ + + V++ V GP P A+ + ++KG Y T G
Sbjct: 152 HYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDE 211
Query: 230 -----WVNVKDVANAHIQAF 244
+V V DVA AH A
Sbjct: 212 GCVRDYVYVGDVAEAHALAL 231
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTR 50
K+ +TG +G S+L + LL +GY V +R ++ R
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQR 69
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 23/196 (11%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 72 EGSFDSIVDGCDGVCHTASPF----YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + +G D V + A+ + + + + + + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI--SFNMIEA-ARINGIKRF 140
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDET--WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
SS + T +V + E+ W ++P+ Y L K E+ + K+
Sbjct: 141 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLEKLATEELCKHYNKDF 194
Query: 186 SIDLVTINPAMVIGPL 201
I+ + GP
Sbjct: 195 GIECRIGRFHNIYGPF 210
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDA--KDPQVELLDPAVKGTLNVLNSCAKFPSIKRVVL 129
+ + +G D V + A+ + ++ + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 130 TSSMAAVLNTGKPRTPDVVVDET--WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEKSI 187
SS + T +V + E+ W ++P+ Y L K E+ + K+ I
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLEKLATEELCKHYNKDFGI 196
Query: 188 DLVTINPAMVIGPL 201
+ + GP
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG 57
V V G +G+I + L +LL +RG+ V R P + T LA G
Sbjct: 3 VLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASG 48
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 8 AGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
A K + VTGA+G + + + L ++ + P DP A + +
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP-----------AGPNEECVQC 50
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+L + + +++V GCDG+ H + P ++L + G N L A+ R+
Sbjct: 51 DLADANAVNAMVAGCDGIVHLGG---ISVEKPFEQILQGNIIGLYN-LYEAARAHGQPRI 106
Query: 128 VLTSS 132
V SS
Sbjct: 107 VFASS 111
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 23/196 (11%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ +TGA G+IAS + + L G+ V AS D KK H+ D + L ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHMTE-DMFCDEFHLVDLRVME 85
Query: 72 EGSFDSIVDGCDGVCHTASPF----YHDAKDPQVELLDPAVKGTLNVLNSCAKFPSIKRV 127
+ + +G D V + A+ + + + + + + N++ + A+ IKR
Sbjct: 86 --NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI--SFNMIEA-ARINGIKRF 140
Query: 128 VLTSSMAAVLNTGKPRTPDVVVDET--WFSDPEVCKQSELWYPLSKTLAEDAAWKFAKEK 185
SS + T +V + E+ W ++P+ Y L + E+ + K+
Sbjct: 141 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA------YGLERLATEELCKHYNKDF 194
Query: 186 SIDLVTINPAMVIGPL 201
I+ + GP
Sbjct: 195 GIECRIGRFHNIYGPF 210
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKA-SVRDPNDPKKTRHLLALDG-ASERLQLFK 66
GK V VTG +G+ WL L + G TVK S+ P P DG SE +
Sbjct: 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD 68
Query: 67 ANLLEEG--SFDSIVDGCDGVCHTAS-PFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPS 123
N L E F + V H A+ P + VE V GT+ +L +
Sbjct: 69 QNKLLESIREFQPEI-----VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 124 IKRVVLTSS 132
+K VV +S
Sbjct: 124 VKAVVNITS 132
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHL 52
+ +TGA G+IAS + + L G+ V AS D KK H+
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS-----DWKKNEHM 67
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASV-RDPNDPKKTRHLLALDG 57
+ VTG +G ++L KLLL +GY V V R +D + L ++G
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEG 63
>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|B Chain B, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|C Chain C, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|D Chain D, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
Length = 293
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANL 69
+ V VTG + I + + G V + R P + L GA + + + ++
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGV-RLDV 100
Query: 70 LEEGS----FDSIVDG---CDGVCHTASPFYH---DAKDPQ--VELLDPAVKGTLNVLNS 117
+ GS ++VD D VC A F D P+ E+LD VKGT+ + +
Sbjct: 101 SDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQA 160
Query: 118 C---AKFPSIKRVVLTSSMAAVLNTGKP 142
C RV+LTSS+ + TG P
Sbjct: 161 CLAPLTASGRGRVILTSSITGPV-TGYP 187
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 28/138 (20%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRD-PNDPKKTRHLLALDGASERLQLFKA 67
GK V VTG +G+ SWL L G VK D P P ++ +
Sbjct: 9 GKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPS-------------LFEIVRL 55
Query: 68 NLLEEGSFDSIVDGCDGVCHTASPF-----YHDAKDPQVEL--------LDPAVKGTLNV 114
N L E I D + + + + F +H A P V L V GT+++
Sbjct: 56 NDLMESHIGDIRD-FEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHL 114
Query: 115 LNSCAKFPSIKRVVLTSS 132
L + + +IK VV +S
Sbjct: 115 LETVKQVGNIKAVVNITS 132
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 129 LTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAA 178
L +A LNTG+ R VV D F + S L KTL E AA
Sbjct: 98 LIGDIAGKLNTGRSRNEQVVTDLKLFMKNSLSVISTHLLQLIKTLVERAA 147
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASVR 41
V +TG +G S+L + LL +GY V VR
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVR 56
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 114/289 (39%), Gaps = 45/289 (15%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASV------RDPNDPKKTRHLLALDGASERLQL 64
++ VTG+SG I + LV L + Y K + RD K + LD S R ++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASDIVQRDTGGIK----FITLD-VSNRDEI 54
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+A +E+ S D+I G+ KDP + + GT N+L AK +
Sbjct: 55 DRA--VEKYSIDAIFH-LAGILSAKG-----EKDPAL-AYKVNMNGTYNIL-EAAKQHRV 104
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
++VV+ S++ P TP V + P Y ++K AE + ++
Sbjct: 105 EKVVIPSTIGVF----GPETPKNKVPSITITRPRTM------YGVTKIAAELLGQYYYEK 154
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-------PNVTFGWVNVKDVA 237
+D+ ++ +I +PT T+ AV + PN + + D
Sbjct: 155 FGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDAL 214
Query: 238 NAHIQAFEVPS-----ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
A + +E NG Y + SE+ + I+E P F++ K
Sbjct: 215 KALVDLYEADRDKLVLRNG-YNVTAYTFTPSELYSKIKERIPEFEIEYK 262
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVR 41
KV +TG +G S+L + LL +GY V R
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR 33
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 25 LVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKA 67
+VKLLL++G V A +D N P+ HL +G E ++L A
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPE---HLAKKNGHHEIVKLLDA 96
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 26 VKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLF 65
VK LLS+G V A +D N P HL A +G +E ++L
Sbjct: 25 VKKLLSKGADVNARSKDGNTP---LHLAAKNGHAEIVKLL 61
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 AAAAGKVVCVTGASGYIASWLVKLLLSRGY 34
+ + K+V VTG +GYI S V L+ GY
Sbjct: 7 SESTSKIVLVTGGAGYIGSHTVVELIENGY 36
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From Sinorhizobium
Meliloti 1021
Length = 260
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKA---SVRDPNDPKKTRHLLALDGASERL--QL 64
KVV +TGAS I + LV+ R Y V A S++ DP H +A D + ++
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDI--HTVAGDISKPETADRI 86
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCA----K 120
+ + G DS+V+ A PF ++ L V G ++ A K
Sbjct: 87 VREGIERFGRIDSLVNNAG--VFLAKPFVEXTQEDYDHNLGVNVAGFFHITQRAAAEXLK 144
Query: 121 FPSIKRVVLTSSMAAVLNTGKP 142
S V +T+S+ G P
Sbjct: 145 QGSGHIVSITTSLVDQPXVGXP 166
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +SS A + +P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSSS--ATVYGDQPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +S AA + +P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSS--AATVYGDQPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 51/207 (24%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ VTG +G+I S LV L+ GY V + +D S + F N
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV----------------VVVDNLSSGRREF-VNPSA 45
Query: 72 EGSFDSIVDGCDGVCHTASPFYHDAKDPQVEL--------LDPAVKGTLNVLNSCAKFPS 123
E + D G +H A +P+V L + V T NVL A+
Sbjct: 46 ELHVRDLKDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL-EWARQTG 104
Query: 124 IKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEV--CKQSELWYPLSKTLAEDAAWK- 180
++ VV SS T + D +V + E + P+S A AA +
Sbjct: 105 VRTVVFASS------------------STVYGDADVIPTPEEEPYKPISVYGAAKAAGEV 146
Query: 181 ----FAKEKSIDLVTINPAMVIGPLLQ 203
+A+ + + + A V+GP L+
Sbjct: 147 MCATYARLFGVRCLAVRYANVVGPRLR 173
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALD 56
+++ VTG +G+I S +VK L +G T V + D K +L+ L+
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN 93
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 23/147 (15%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDV 147
++K + +SS A + +P+ P V
Sbjct: 113 AANVKNFIFSSS--ATVYGDQPKIPYV 137
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 23/147 (15%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDV 147
++K + +S AA + +P+ P V
Sbjct: 113 AANVKNFIFSS--AATVYGDQPKIPYV 137
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +SS A + P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSSS--ATVYGDNPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +S AA + P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSS--AATVYGDNPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +SS A + P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSSS--ATVYGDNPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 23/147 (15%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDV 147
++K + +S AA + P+ P V
Sbjct: 113 AANVKNFIFSS--AATVYGDNPKIPYV 137
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 45/289 (15%)
Query: 11 VVCVTGASGYIASWLVKLLLSRGYTVKASV------RDPNDPKKTRHLLALDGASERLQL 64
++ VTG+SG I + LV L + Y K + RD K + LD S R ++
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASDIVQRDTGGIK----FITLD-VSNRDEI 54
Query: 65 FKANLLEEGSFDSIVDGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+A +E+ S D+I G+ KDP + + GT N+L AK +
Sbjct: 55 DRA--VEKYSIDAIFH-LAGILSAKG-----EKDPALA-YKVNMNGTYNIL-EAAKQHRV 104
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAEDAAWKFAKE 184
++VV+ S++ P TP V + P + ++K AE + ++
Sbjct: 105 EKVVIPSTIGVF----GPETPKNKVPSITITRPRTM------FGVTKIAAELLGQYYYEK 154
Query: 185 KSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKGAQTY-------PNVTFGWVNVKDVA 237
+D+ ++ +I +PT T+ AV + PN + + D
Sbjct: 155 FGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDAL 214
Query: 238 NAHIQAFEVPS-----ANGRYCLVERVSHYSEIVNIIRELYPAFQLPEK 281
A + +E NG Y + SE+ + I+E P F++ K
Sbjct: 215 KALVDLYEADRDKLVLRNG-YNVTAYTFTPSELYSKIKERIPEFEIEYK 262
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASERLQLFKANLLE 71
+ V GA+G S +V RG+ V A VRDP E L L +A+L
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADL-- 60
Query: 72 EGSFDSIVD 80
S D++VD
Sbjct: 61 -DSVDAVVD 68
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 209 SAAAVLSLIKGAQTYPNVT---FG-----WVNVKDVANAHIQAFEVPSANGRYCLVERVS 260
+A+ VL L GA + V FG +V ++DV A+++A + + +
Sbjct: 200 TASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQKSGVYNVGYSQAR 259
Query: 261 HYSEIVNIIRELYPAFQL 278
Y+EIV+I++E F++
Sbjct: 260 SYNEIVSILKEHLGDFKV 277
>pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
pdb|3U09|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase (Fabg)(G92d) From Vibrio Cholerae
Length = 251
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 1 MSSVAAAAGKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASE 60
MS GKV VTGAS I + +LL RG V + + + L +G
Sbjct: 4 MSQFMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGM 63
Query: 61 RLQ---------LFKANLLEEGSFDSIVDGCD 83
L + KA E G D +V+ D
Sbjct: 64 ALNVTNPESIEAVLKAITDEFGGVDILVNNAD 95
>pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
OF Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|B Chain B, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
OF Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|C Chain C, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
OF Unknown Function From Caenorhabditis Elegans With
Cofactor
pdb|1XKQ|D Chain D, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE
OF Unknown Function From Caenorhabditis Elegans With
Cofactor
Length = 280
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 10 KVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDGASER-LQLFKAN 68
K V +TG+S I L G V + R ++TR ++ G SE+ + A+
Sbjct: 7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVAD 66
Query: 69 LLEEGSFDSIVD 80
+ E D I++
Sbjct: 67 VTTEDGQDQIIN 78
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 98/266 (36%), Gaps = 52/266 (19%)
Query: 12 VCVTGASGYIASWLVKLLLSRGYTV---------KASVRDPNDPKKTRHLLALDGASERL 62
V VTG SGYI S LL G+ V K SV + +H ++G R
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-DIRN 61
Query: 63 QLFKANLLEEGSFDSIVD--GCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAK 120
+ +L + + D+++ G V + +E D V GTL ++ S +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQ--------KPLEYYDNNVNGTLRLI-SAMR 112
Query: 121 FPSIKRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKTLAE----- 175
++K + +S+ A + P+ P V S P QS Y SK + E
Sbjct: 113 AANVKNFIFSST--ATVYGDNPKIPYVE------SFPTGTPQSP--YGKSKLMVEQILTD 162
Query: 176 ----DAAWKFAKEKSIDLVTINPAMVIGPLLQPTLNTSAAAVLSLIKG--------AQTY 223
W A + + V +P+ +G Q N + + G Y
Sbjct: 163 LQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY 222
Query: 224 P----NVTFGWVNVKDVANAHIQAFE 245
P +++V D+A+ H+ A E
Sbjct: 223 PTEDGTGVRDYIHVMDLADGHVVAME 248
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 14 VTGASGYIASWLVKLLLSRGYTVKASVRDPNDP---KKTRHLLALDGASERLQLFKANL- 69
+TGA+G++ ++L++ L + + +R N+ K L + E ++ +N+
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXLSNIE 133
Query: 70 LEEGSF---DSIV--DGCDGVCHTASPFYHDAKDPQVELLDPAVKGTLNVLNSCAKFPSI 124
+ G F D +V + D + H + H D + E ++ V+GT++V+ + +
Sbjct: 134 VIVGDFECXDDVVLPENXDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQHHAR 191
Query: 125 KRVVLTSSMAAVLNTGKPRTPDVVVDETWFSDPEVCKQSELWYPLSKT 172
V T S+ D+ ++ FS+ +V K L P +++
Sbjct: 192 LIYVSTISVGTYF--------DIDTEDVTFSEADVYKGQLLTSPYTRS 231
>pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|N Chain N, Architecture Of Mammalian Fatty Acid Synthase
Length = 226
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 9 GKVVCVTGASGYIASWLVKLLLSRGYTVKASVRDPNDPKKTRHLLALDG 57
GK+ VTGAS I + + L +RG V + N + L +G
Sbjct: 5 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANG 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,852,073
Number of Sequences: 62578
Number of extensions: 397792
Number of successful extensions: 1222
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 66
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)