Query 020267
Match_columns 328
No_of_seqs 197 out of 430
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 3.7E-29 1.3E-33 190.5 6.0 61 46-107 2-62 (64)
2 2yus_A SWI/SNF-related matrix- 94.5 0.061 2.1E-06 41.5 5.5 52 46-103 13-64 (79)
3 2yum_A ZZZ3 protein, zinc fing 92.7 0.077 2.6E-06 39.5 3.1 53 49-104 6-61 (75)
4 2cu7_A KIAA1915 protein; nucle 92.4 0.18 6.2E-06 37.4 4.8 52 48-105 6-57 (72)
5 1x41_A Transcriptional adaptor 91.2 0.29 1E-05 35.2 4.7 50 48-103 5-55 (60)
6 2iw5_B Protein corest, REST co 90.5 0.23 7.8E-06 46.1 4.3 52 46-103 128-179 (235)
7 2xag_B REST corepressor 1; ami 89.0 0.43 1.5E-05 48.0 5.4 52 47-104 376-427 (482)
8 1ity_A TRF1; helix-turn-helix, 88.0 1.4 4.9E-05 32.2 6.3 53 46-102 5-58 (69)
9 2hzd_A Transcriptional enhance 86.4 0.71 2.4E-05 36.7 4.1 57 49-107 4-77 (82)
10 2elk_A SPCC24B10.08C protein; 85.7 1.3 4.6E-05 31.6 5.0 48 51-103 9-57 (58)
11 2cqq_A RSGI RUH-037, DNAJ homo 84.5 1.3 4.4E-05 33.7 4.6 47 52-104 9-58 (72)
12 2ba2_A D12_ORF131, hypothetica 82.5 2.5 8.6E-05 33.9 5.7 45 137-182 34-78 (85)
13 3sjm_A Telomeric repeat-bindin 82.1 1.7 5.9E-05 31.9 4.4 48 48-99 8-56 (64)
14 2cqr_A RSGI RUH-043, DNAJ homo 81.3 2 7E-05 32.7 4.7 49 51-102 18-67 (73)
15 2d9a_A B-MYB, MYB-related prot 80.8 2.8 9.6E-05 29.6 5.0 48 48-101 5-53 (60)
16 2yqk_A Arginine-glutamic acid 73.9 3.6 0.00012 30.1 4.0 47 46-97 4-50 (63)
17 2dim_A Cell division cycle 5-l 73.6 5.6 0.00019 29.0 5.0 49 47-101 5-54 (70)
18 1w0t_A Telomeric repeat bindin 72.7 5.2 0.00018 27.7 4.4 47 51-101 2-49 (53)
19 1guu_A C-MYB, MYB proto-oncoge 70.8 7.6 0.00026 26.5 4.9 46 51-101 3-48 (52)
20 2eqr_A N-COR1, N-COR, nuclear 70.4 5.1 0.00017 28.9 4.1 46 46-97 7-52 (61)
21 4eef_G F-HB80.4, designed hema 70.1 2.5 8.4E-05 33.1 2.4 44 53-99 22-66 (74)
22 2cjj_A Radialis; plant develop 69.0 6.2 0.00021 31.3 4.6 47 53-102 10-57 (93)
23 1wgx_A KIAA1903 protein; MYB D 65.2 8.9 0.0003 29.5 4.7 46 53-101 10-56 (73)
24 1gvd_A MYB proto-oncogene prot 65.2 12 0.0004 25.7 4.9 46 51-102 3-49 (52)
25 2aje_A Telomere repeat-binding 58.3 13 0.00045 30.2 4.7 52 46-101 8-62 (105)
26 2din_A Cell division cycle 5-l 48.1 21 0.00071 25.6 4.0 48 49-103 7-54 (66)
27 2ltp_A Nuclear receptor corepr 51.5 4.4 0.00015 31.3 0.0 49 49-103 14-62 (89)
28 2crg_A Metastasis associated p 45.0 22 0.00075 26.4 3.8 47 47-98 4-50 (70)
29 2k9n_A MYB24; R2R3 domain, DNA 43.4 25 0.00085 27.3 4.1 46 51-102 53-98 (107)
30 3osg_A MYB21; transcription-DN 41.9 29 0.00098 27.8 4.3 51 52-108 63-113 (126)
31 1gv2_A C-MYB, MYB proto-oncoge 41.8 35 0.0012 26.1 4.6 45 51-101 56-100 (105)
32 2roh_A RTBP1, telomere binding 39.0 1.3E+02 0.0045 24.9 8.0 52 46-101 26-80 (122)
33 1h8a_C AMV V-MYB, MYB transfor 36.3 34 0.0012 27.2 3.9 45 51-101 79-123 (128)
34 3osg_A MYB21; transcription-DN 36.2 43 0.0015 26.8 4.5 51 46-102 6-56 (126)
35 3ok8_A Brain-specific angiogen 35.7 85 0.0029 28.6 6.8 41 135-175 71-122 (222)
36 2da3_A Alpha-fetoprotein enhan 35.3 71 0.0024 23.1 5.2 61 44-107 14-74 (80)
37 3zqc_A MYB3; transcription-DNA 34.9 51 0.0018 26.4 4.8 46 52-103 55-100 (131)
38 1gv2_A C-MYB, MYB proto-oncoge 34.0 65 0.0022 24.6 5.0 46 51-101 4-49 (105)
39 2xdj_A Uncharacterized protein 32.4 1E+02 0.0036 24.0 6.0 38 142-180 20-60 (83)
40 3kdq_A Uncharacterized conserv 31.5 43 0.0015 28.8 3.9 27 133-164 2-28 (154)
41 3zqc_A MYB3; transcription-DNA 30.9 70 0.0024 25.6 4.9 44 53-102 4-48 (131)
42 1x58_A Hypothetical protein 49 30.0 1.1E+02 0.0038 22.9 5.5 54 48-108 5-59 (62)
43 2ckx_A NGTRF1, telomere bindin 29.8 52 0.0018 25.4 3.8 45 53-101 2-49 (83)
44 1deq_A Fibrinogen (alpha chain 29.6 61 0.0021 32.0 5.1 39 135-173 112-153 (390)
45 2juh_A Telomere binding protei 28.9 50 0.0017 27.5 3.8 53 46-102 12-67 (121)
46 1h89_C C-MYB, MYB proto-oncoge 25.5 77 0.0026 26.0 4.4 46 50-101 109-154 (159)
47 2k9n_A MYB24; R2R3 domain, DNA 24.9 1.1E+02 0.0036 23.7 4.8 45 52-101 2-46 (107)
48 3tbg_A Cytochrome P450 2D6; mo 24.5 42 0.0014 30.0 2.8 37 146-182 304-346 (479)
49 4a69_C Nuclear receptor corepr 23.2 48 0.0016 25.9 2.6 41 49-95 41-81 (94)
50 2dmt_A Homeobox protein BARH-l 23.2 2.2E+02 0.0075 20.7 6.5 61 44-107 14-74 (80)
51 1h8a_C AMV V-MYB, MYB transfor 21.2 1.6E+02 0.0055 23.2 5.4 47 50-101 26-72 (128)
52 3b73_A PHIH1 repressor-like pr 20.4 1.1E+02 0.0039 24.4 4.3 50 51-104 7-56 (111)
53 3ghg_A Fibrinogen alpha chain; 20.1 97 0.0033 32.0 4.6 37 136-172 110-149 (562)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3.7e-29 Score=190.54 Aligned_cols=61 Identities=49% Similarity=0.750 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccC
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (328)
..+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||+|||||||+...+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 799999999999999999999999999999997543
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=94.52 E-value=0.061 Score=41.46 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=41.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
.....+-.||++=+.+|++||..+|+-+. .|-++|+ +=|..+++.|.++|-+
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~----~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYKDDWN----KVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSSSCHH----HHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhCCCHH----HHHHHcC--CCCHHHHHHHHHHhcc
Confidence 33445778999999999999999996543 6777764 7999999999988743
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.70 E-value=0.077 Score=39.46 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCCc---cchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267 49 KQRLRWTHELHERFVDAVAQLGGPDRATP---KGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (328)
Q Consensus 49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (328)
..+-.||+|=+++|++||..+|. +...| +.|-+.| +|=|..+|+.|.|+|-..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 34557999999999999999992 22111 2344444 689999999999999654
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.38 E-value=0.18 Score=37.41 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=40.7
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhc
Q 020267 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105 (328)
Q Consensus 48 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k 105 (328)
...+-.||+|-++.|+++|..+|-- =+.|-+. ++|=|..+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRR----WTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSC----HHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 3445689999999999999999942 2355554 47899999999999995543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=91.19 E-value=0.29 Score=35.16 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=40.0
Q ss_pred CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
.-.|-.||+|-.++|++||..+| +-+. .|-+.| +|=|..+++.|-++|-+
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~----~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQ----DVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHH----HHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHH----HHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34456799999999999999999 4443 566666 67899999999988854
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=90.46 E-value=0.23 Score=46.08 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=42.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
...+..-+||++=++.|++|+..+|--+. .|-++ |++=|..+|+.|..+||.
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGKDW~----~IAk~--VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGRDFQ----AISDV--IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSSCHH----HHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCcCHH----HHHHH--cCCCCHHHHHHHHHHHHH
Confidence 34577889999999999999999994333 56666 567999999999999973
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=89.00 E-value=0.43 Score=47.96 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=43.0
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (328)
Q Consensus 47 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (328)
..+..-+||.+=|..|++||.+.|--+. .|-++++- =|..+|++|.++||..
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yGkdw~----~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYGRDFQ----AISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHTTCHH----HHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCcCHH----HHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 3466789999999999999999995443 67777665 6999999999999753
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=87.99 E-value=1.4 Score=32.17 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=43.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (328)
..++.|-.||+|--+..+++|.++| |-+. .|.+.|+..|=|-.+++.+...|-
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~----~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWS----KILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHH----HHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHH----HHHHHcCcCCCCHHHHHHHHHHHc
Confidence 4577888999999999999999999 4443 778888655889999998877664
No 9
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.38 E-value=0.71 Score=36.68 Aligned_cols=57 Identities=25% Similarity=0.278 Sum_probs=37.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhh---hc-C-----------C--CCccHHHHHHHhhhhhhhccC
Q 020267 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLR---VM-G-----------V--QGLTIYHVKSHLQKYRLAKYL 107 (328)
Q Consensus 49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------V--~GLT~~hVKSHLQKYRl~k~~ 107 (328)
+..-.|.++|-..|++|+..+-=..+. |-+|. .| | . .-=|+.+|.||||.-|-.+..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 445689999999999999987511122 23331 11 1 1 233777899999998766543
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=85.73 E-value=1.3 Score=31.59 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=37.6
Q ss_pred cccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
+-.||++-.+++++||.++| +-+. .|-+.|+. |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWA----DIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999999 5444 55555542 6899999999888754
No 11
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.51 E-value=1.3 Score=33.67 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCccc---hhhhcCCCCccHHHHHHHhhhhhhh
Q 020267 52 LRWTHELHERFVDAVAQLGGPDRATPKG---VLRVMGVQGLTIYHVKSHLQKYRLA 104 (328)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (328)
-.||.|=+.+|+.|+..++ .-||.+ |-+.| |=|..+|+.|-+++.-.
T Consensus 9 ~~WT~eE~k~fe~al~~~p---~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFP---GGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3699999999999999998 335665 44554 68999999998887543
No 12
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=82.49 E-value=2.5 Score=33.94 Aligned_cols=45 Identities=31% Similarity=0.422 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHcC
Q 020267 137 ITEALKLQMEVQKRLHEQLERQLQLRIEAQGKYLKKIIEEQQRLSG 182 (328)
Q Consensus 137 ItEALrlQmEVQrrLhEQLER~LQLRIEAQGKYLqsiLEkqq~l~g 182 (328)
|.+.|..|-|-=+.--||| +.||+-+.|||+-|+.||+.-+.++.
T Consensus 34 ie~~~~~QgEqI~~qGeqI-keLq~eqkaQg~tl~lil~tL~~~nk 78 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI-KELQVEQKAQGKTLQLILEALQGINK 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778887776554445555 89999999999999999987665543
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=82.14 E-value=1.7 Score=31.93 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhh
Q 020267 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQ 99 (328)
Q Consensus 48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQ 99 (328)
.+.|-.||+|--++.+++|.++| |-+. .|.+.+.+.|=|-.+++-.-.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~----~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWA----AISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHH----HHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchH----HHHhhcCCCCCCHHHHHHHHH
Confidence 34566899999999999999999 3333 688888878888888875543
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=81.33 E-value=2 Score=32.68 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (328)
+-.||.+=...|++||..+| +-+|..--++-. |||=|..+|+.|.+.+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44699999999999999998 236665443332 57999999999988764
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=80.80 E-value=2.8 Score=29.65 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 48 ~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
...|-.||+|=.++++++|.++| +-+ ..|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDW----KFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCH----HHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHc--cCCCHHHHHHHHHHH
Confidence 45677899999999999999999 333 3555554 678999998887766
No 16
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.87 E-value=3.6 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=32.0
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHH
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSH 97 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 97 (328)
.+...+-.||++=|+.|.+|+.+.|=-. ..|-+.| |+.-|..+|..+
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf----~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNF----FRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCH----HHHHHHS-CTTSCHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccH----HHHHHHH-cCCCcHHHHHHH
Confidence 3455567999999999999999999211 2333311 566788877543
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.57 E-value=5.6 Score=28.97 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=38.8
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 47 ASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 47 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
....|=.||++=.++++++|.++| +-. +.|-+.|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQW----SRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCH----HHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHhc--CCCHHHHHHHHHHH
Confidence 345566899999999999999999 333 46666764 78999999887776
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=72.71 E-value=5.2 Score=27.71 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=36.6
Q ss_pred cccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
|-.||+|-.+..+++|..+| |-. +.|.+.|+..|=|-.+++.+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH----HHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 444 367777765577888888765554
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=70.84 E-value=7.6 Score=26.52 Aligned_cols=46 Identities=26% Similarity=0.294 Sum_probs=35.4
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
|-.||+|=.++++++|.++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 1123555554 688999998887766
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.43 E-value=5.1 Score=28.86 Aligned_cols=46 Identities=13% Similarity=-0.021 Sum_probs=34.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHH
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSH 97 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 97 (328)
..++..-.||++=|+.|++|+.+.|--+ ..|-.+ |++-|..+|.-|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk~w----~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPKNF----GLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTTCH----HHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHH
Confidence 4567788999999999999999998322 244444 568888888754
No 21
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=70.07 E-value=2.5 Score=33.12 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhh
Q 020267 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQ 99 (328)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQ 99 (328)
.||.+=...|..|+..++ +-||.+--++-. |||-|...|+.|-|
T Consensus 22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999998875 667877655544 68999999999855
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=68.95 E-value=6.2 Score=31.31 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhhhhh
Q 020267 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR 102 (328)
.||.+=...|++|+..+| +-+|.+--++=. |+|=|..+|+.|-+++.
T Consensus 10 ~WT~eEd~~L~~al~~~~---~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYD---KDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp SCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999998 225654322222 57999999999988874
No 23
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=65.24 E-value=8.9 Score=29.51 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhhhh
Q 020267 53 RWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKY 101 (328)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKY 101 (328)
.||.+=..+|.+|+..++ +.+|-.-.++-. |+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 499999999999999987 557876654433 7889999999876554
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=65.15 E-value=12 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCC-CCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (328)
|-.||+|=.++++++|.++|. -. ..|-+.| +|=|-.+++.|-.+|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRW----SVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCH----HHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChH----HHHHHHc--CCCCHHHHHHHHHHHc
Confidence 447999999999999999993 12 2455554 6889999988877663
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=58.26 E-value=13 Score=30.19 Aligned_cols=52 Identities=21% Similarity=0.140 Sum_probs=40.6
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC-CCCCCccchhhhcC--CCCccHHHHHHHhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (328)
..++.|-.||+|--+..+++|..+|. -+. .|++.+. .+|=|-.++|.+...+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR----DVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH----HHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 46888999999999999999999993 454 6777553 4888999999654443
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.14 E-value=21 Score=25.58 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=37.0
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
..+-.||+|=.++++++|..+|.-+ ..|-++ +|=|-.+++.|.+.|--
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W----~~Ia~~---~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQW----RTIAPI---IGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCH----HHHHHH---HSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCH----HHHhcc---cCcCHHHHHHHHHHHhC
Confidence 3455799999999999999999422 355554 46899999999888843
No 27
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=51.45 E-value=4.4 Score=31.35 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
-.+=.||+|=.+.|+++|..+|--+. .|-+. ++|=|..+|+.|...|.-
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~----~IA~~--l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWS----AIARM--VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 33457999999999999999994333 44444 468899999988877743
No 28
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.99 E-value=22 Score=26.43 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=32.9
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHh
Q 020267 47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHL 98 (328)
Q Consensus 47 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 98 (328)
.++..-.||++=+..|.+|+...|= + =..|-+. -|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 3566778999999999999999992 1 1233331 15778888877554
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=43.40 E-value=25 Score=27.33 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=36.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (328)
+-.||+|=...++++|.++|.-. ..|-+.| +|=|-.+|+.|...+.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKW----NKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCH----HHHHHHC--CCCCHHHHHHHHHHHH
Confidence 45799999999999999999422 2555554 7899999998876653
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=41.85 E-value=29 Score=27.81 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccCC
Q 020267 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108 (328)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p 108 (328)
-.||+|=.+.++++|.++|.-+ ..|-+. ++|=|-.+|+.|...+......|
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGRQW----AIIAKF--FPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHHHHHHTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHHhcCCC
Confidence 3699999999999999999533 355554 47899999999876665443333
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=41.78 E-value=35 Score=26.14 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=35.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
+-.||+|=...++++|.++|.-. ..|-+. +||=|-.+|+.|...+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCH----HHHHTT--CTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCH----HHHHHH--cCCCCHHHHHHHHHHH
Confidence 45799999999999999999422 245554 4889999999886543
No 32
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=38.96 E-value=1.3e+02 Score=24.92 Aligned_cols=52 Identities=27% Similarity=0.221 Sum_probs=40.5
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-CCCCCCccchhhhc--CCCCccHHHHHHHhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVM--GVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM--~V~GLT~~hVKSHLQKY 101 (328)
..++.|-.||+|--+..+++|+++| |-+. .|++.+ ..+|=|-.++|.+...+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~----~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWR----DVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHH----HHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChH----HHHHHhccccCCCCHHHHHHHHHHH
Confidence 4578899999999999999999999 3444 677654 24788999999654443
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=36.28 E-value=34 Score=27.24 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=34.9
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
+-.||+|-.+.++++|.++|.-+ ..|-+. +||=|-.+|+.|...+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCH----HHHGGG--STTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCH----HHHHHH--CCCCCHHHHHHHHHHH
Confidence 45799999999999999999422 255555 4789999999886543
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=36.23 E-value=43 Score=26.78 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=38.2
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (328)
.....|-.||+|--++++++|.+.|. .=+.|-+.| +|=|..+++.+-..|-
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 34566778999999999999999994 234565555 5778888887766654
No 35
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=35.66 E-value=85 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHhhhhHHHHH-----------HHHhHHHHHHhHHHHHHHH
Q 020267 135 MQITEALKLQMEVQKRLHEQLE-----------RQLQLRIEAQGKYLKKIIE 175 (328)
Q Consensus 135 ~qItEALrlQmEVQrrLhEQLE-----------R~LQLRIEAQGKYLqsiLE 175 (328)
-.|.+||.-=-|++|+|..+|| ..|+.+||...||++..+.
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777555589999999988 7899999999999986553
No 36
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.30 E-value=71 Score=23.09 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=40.2
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccC
Q 020267 44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (328)
Q Consensus 44 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (328)
+...++.|.++|.+-- ..++.+.... ...+...+.++...-|||..+|+.=.|.-|..-++
T Consensus 14 ~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 14 PQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 4456778888888732 3334444433 34455556666666789999999999988876443
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=34.87 E-value=51 Score=26.41 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhh
Q 020267 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 (328)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 103 (328)
=.||+|=.+.++++|.++|.-+ ..|-+. ++|=|-.+|+.|...|-.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~~W----~~Ia~~--l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGSKW----SVIAKL--IPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCSCH----HHHTTT--STTCCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999643 245554 468999999998776643
No 38
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=33.96 E-value=65 Score=24.58 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=35.1
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4479999999999999999941 112565655 688999998877665
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=32.42 E-value=1e+02 Score=23.95 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHhhhhHHHHH---HHHhHHHHHHhHHHHHHHHHHHHH
Q 020267 142 KLQMEVQKRLHEQLE---RQLQLRIEAQGKYLKKIIEEQQRL 180 (328)
Q Consensus 142 rlQmEVQrrLhEQLE---R~LQLRIEAQGKYLqsiLEkqq~l 180 (328)
++++++|.+| ++|. +.|.=.||.+..-|..|.+.|..+
T Consensus 20 q~~~~Lq~Ql-~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 20 QLLTQLQQQL-SDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4567777776 3344 788888999999999999977653
No 40
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=31.50 E-value=43 Score=28.76 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHHhhhhHHHHHHHHhHHHH
Q 020267 133 SGMQITEALKLQMEVQKRLHEQLERQLQLRIE 164 (328)
Q Consensus 133 sg~qItEALrlQmEVQrrLhEQLER~LQLRIE 164 (328)
++|-+.|||.+--.+|||+. +|+-||.
T Consensus 2 ~~MKLAEAL~lRadl~kri~-----qL~~ri~ 28 (154)
T 3kdq_A 2 NAMYLAEALAQRVEAQRRYS-----ELNQLLL 28 (154)
T ss_dssp -CCBHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 46889999999999999993 4555554
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=30.94 E-value=70 Score=25.62 Aligned_cols=44 Identities=7% Similarity=-0.000 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCCCCccchhhhcCCCCccHHHHHHHhhhhh
Q 020267 53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 102 (328)
.||+|--++.+++|...| +-+. .|-..| +|=|..++.-+-..|-
T Consensus 4 ~Wt~eED~~L~~~v~~~g~~~W~----~Ia~~~--~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKENGPQNWP----RITSFL--PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SCCHHHHHHHHHHHHHHCSCCGG----GGTTSC--TTSCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcCCHH----HHHHHH--CCCCHHHHHHHHhhcc
Confidence 699999999999999999 3333 555555 6788888887776653
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.98 E-value=1.1e+02 Score=22.93 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcC-CCCccHHHHHHHhhhhhhhccCC
Q 020267 48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYRLAKYLP 108 (328)
Q Consensus 48 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYRl~k~~p 108 (328)
.+.|-.||+|--+.-++.|.++|-. =+.|+.-.. .+|=|...||. |||.-.+.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~----W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNH----WNSILWSFPFQKGRRAVDLAH---KYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSC----HHHHHHHSCCCTTCCHHHHHH---HHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHh----HHHHHHhCCCccCcccchHHH---HHHHHHhcc
Confidence 4578899999999999999999943 347875433 46788888884 777765443
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=29.80 E-value=52 Score=25.39 Aligned_cols=45 Identities=22% Similarity=0.157 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCCCCccchhhhcC--CCCccHHHHHHHhhhh
Q 020267 53 RWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKY 101 (328)
Q Consensus 53 rWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKY 101 (328)
.||+|-.+..+++|.++|. -+. .|++... ++|=|-.++|.+...+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~----~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHH----HHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcH----HHHHhhccccCCCCHHHHHHHHHHH
Confidence 5999999999999999993 444 6766432 5788999999765554
No 44
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.64 E-value=61 Score=32.03 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=30.3
Q ss_pred CChHHHHHHHH-HHhhhhHHHHH--HHHhHHHHHHhHHHHHH
Q 020267 135 MQITEALKLQM-EVQKRLHEQLE--RQLQLRIEAQGKYLKKI 173 (328)
Q Consensus 135 ~qItEALrlQm-EVQrrLhEQLE--R~LQLRIEAQGKYLqsi 173 (328)
.++++-|+-|+ .+|+++.+||. |.||--|+.|-.-+|+|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35677786655 68899999998 99999988887776664
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=28.91 E-value=50 Score=27.47 Aligned_cols=53 Identities=21% Similarity=0.126 Sum_probs=41.9
Q ss_pred CCCCCcccCCHHHHHHHHHHHHHhCC-CCCCCccchhhhcC--CCCccHHHHHHHhhhhh
Q 020267 46 LASKQRLRWTHELHERFVDAVAQLGG-PDRATPKGVLRVMG--VQGLTIYHVKSHLQKYR 102 (328)
Q Consensus 46 ~~~KpRlrWT~ELH~rFV~AV~qLGG-~dkAtPK~IL~lM~--V~GLT~~hVKSHLQKYR 102 (328)
..++.|-.||+|--+..+++|.++|. -+. .|++.+. .+|=|-.++|.+...+-
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~----~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWR----DVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHH----HHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHH----HHHHHhccccCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999993 444 6777764 37889999997655543
No 46
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=25.49 E-value=77 Score=26.00 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=35.6
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 50 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
.+-.||++=...++++|.++|.-. ..|-+. +||=|-.+|+.|...+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W----~~Ia~~--l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRW----AEIAKL--LPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCH----HHHHTT--STTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCH----HHHHHH--CCCCCHHHHHHHHHHH
Confidence 456799999999999999999422 255554 5899999999886543
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=24.88 E-value=1.1e+02 Score=23.71 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 52 LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 52 lrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
-.||+|--++++++|..+|.- .=+.|-+.| +|=|..++..+-.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLM--ITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHT--TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhc--CCCCHHHHHHHHHHH
Confidence 479999999999999999931 123565665 477888887665554
No 48
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=24.48 E-value=42 Score=30.01 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=28.5
Q ss_pred HHhhhhHHHHH------HHHhHHHHHHhHHHHHHHHHHHHHcC
Q 020267 146 EVQKRLHEQLE------RQLQLRIEAQGKYLKKIIEEQQRLSG 182 (328)
Q Consensus 146 EVQrrLhEQLE------R~LQLRIEAQGKYLqsiLEkqq~l~g 182 (328)
|||+||+|.|+ +....---.+=.||++++++.-++..
T Consensus 304 ~~q~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~avi~EtlRl~p 346 (479)
T 3tbg_A 304 DVQRRVQQEIDDVIGQVRRPEMGDQAHMPYTTAVIHEVQRFGD 346 (479)
T ss_dssp HHHHHHHHHHHHHTCSSSCCCHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 89999999887 33334444567899999999998764
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=23.24 E-value=48 Score=25.94 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=28.1
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHH
Q 020267 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVK 95 (328)
Q Consensus 49 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVK 95 (328)
+..=.||++=|+.|.+|+.+.|-- -..|-+. +++-|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~--l~~Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN----FGLIASF--LERKTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC----HHHHHHT--CTTCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHHHH--cCCCCHHHHH
Confidence 445679999999999999999822 2355443 3555655543
No 50
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.22 E-value=2.2e+02 Score=20.71 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=40.1
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhhccC
Q 020267 44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107 (328)
Q Consensus 44 ~~~~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~ 107 (328)
....++.|.++|.+-... ++.+.+.- ...++..+.++...-|||..+|+-=.|.-|..-++
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~-Le~~F~~~--~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMG-LEKRFEKQ--KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCCCCCSCCCCCHHHHHH-HHHHHHHC--SSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHH-HHHHHHhc--CCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 345678888899864333 33333332 34555566666667789999999999988876443
No 51
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.18 E-value=1.6e+02 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=35.0
Q ss_pred CcccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhh
Q 020267 50 QRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKY 101 (328)
Q Consensus 50 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 101 (328)
.+-.||+|=-++++++|..+|.- .=+.|-+.| +|=|..+++.|-.+|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHHh
Confidence 45579999999999999999931 112555555 578888998776655
No 52
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.40 E-value=1.1e+02 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=40.0
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCccchhhhcCCCCccHHHHHHHhhhhhhh
Q 020267 51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104 (328)
Q Consensus 51 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 104 (328)
+..|-...-++.++.+..-| .+||+.|-+.+++ |+|...|..||++-.-.
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 45688888899999988777 7888888876632 67999999999987654
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.11 E-value=97 Score=31.97 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=19.8
Q ss_pred ChHHHH-HHHHHHhhhhHHHHH--HHHhHHHHHHhHHHHH
Q 020267 136 QITEAL-KLQMEVQKRLHEQLE--RQLQLRIEAQGKYLKK 172 (328)
Q Consensus 136 qItEAL-rlQmEVQrrLhEQLE--R~LQLRIEAQGKYLqs 172 (328)
||++-| +.+..++++|.+||. |.||=.|+.|-.-||+
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444 333345555555555 6666666666555544
Done!