BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020269
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 134/233 (57%), Gaps = 8/233 (3%)
Query: 71 KTKTSEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKS-DGQ- 128
+ K + +R + +D RT L+K+ +G + G ISTGKEANV++A DG+
Sbjct: 15 RIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKP 74
Query: 129 -ELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGI 187
+AVK+Y+ F D Y+ GD RF + +P++ V W EKE RNL R K AG+
Sbjct: 75 VAMAVKIYRIETSEFDKMDEYLYGDERF--DMRRISPKEKVFIWTEKEFRNLERAKEAGV 132
Query: 188 RCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDKLR-EG-YVEMIIAMRTLYQRCKL 245
P PY +VL+MEFIG+ AP L + L +L EG + +++ ++ LYQ +L
Sbjct: 133 SVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAEL 192
Query: 246 VHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHALDFLREDCVHVSDFFKKHGV 298
VH DLSEYNI+Y + +Y ID+ QAV L HP A +L D ++ FF K+GV
Sbjct: 193 VHADLSEYNIMYID-KVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSKYGV 244
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 130/233 (55%), Gaps = 8/233 (3%)
Query: 71 KTKTSEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKS-DGQE 129
+ K + +R + +D RT L+K+ +G G ISTGKEANV++A DG+
Sbjct: 15 RIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAXGGVISTGKEANVFYADGVFDGKP 74
Query: 130 LA--VKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGI 187
+A VK+Y+ F D Y+ GD RF + +P++ V W EKE RNL R K AG+
Sbjct: 75 VAXAVKIYRIETSEFDKXDEYLYGDERF--DXRRISPKEKVFIWTEKEFRNLERAKEAGV 132
Query: 188 RCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDKLR-EG-YVEMIIAMRTLYQRCKL 245
P PY +VL+ EFIG+ AP L + L +L EG + +++ ++ LYQ +L
Sbjct: 133 SVPQPYTYXKNVLLXEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAEL 192
Query: 246 VHGDLSEYNILYFEGHLYIIDVSQAVDLDHPHALDFLREDCVHVSDFFKKHGV 298
VH DLSEYNI Y + +Y ID QAV L HP A +L D ++ FF K+GV
Sbjct: 193 VHADLSEYNIXYID-KVYFIDXGQAVTLRHPXAESYLERDVRNIIRFFSKYGV 244
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 95 LFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKD-RDRYVQGDY 153
L +++ G I + GKE+ V++ E VK +K FK +++ GD
Sbjct: 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDL 141
Query: 154 RFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAP 213
F + A E R L +L+ G+ P Y + ++ME I
Sbjct: 142 HFSVLAIRS---------ARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELIDAKELYRV 190
Query: 214 RLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVSQAVDL 273
R+++ LD + E + Y R +VHGDLS+YN+L E ++IID Q+V++
Sbjct: 191 RVENPDEVLDMILE-------EVAKFYHRG-IVHGDLSQYNVLVSEEGIWIIDFPQSVEV 242
Query: 274 DHPHALDFLREDCVHVSDFFKK 295
+ L D ++ +F +
Sbjct: 243 GEEGWREILERDVRNIITYFSR 264
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 20/202 (9%)
Query: 95 LFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKD-RDRYVQGDY 153
L +++ G I GKE+ V++ E VK +K FK +++ GD
Sbjct: 82 LHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDL 141
Query: 154 RFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAP 213
F + A E R L +L+ G+ P Y + ++ E I
Sbjct: 142 HFSVLAIRS---------ARNEFRALQKLQ--GLAVPKVYAWEGNAVLXELIDAKELYRV 190
Query: 214 RLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVSQAVDL 273
R+++ LD + E + Y R +VHGDLS+YN+L E ++IID Q+V++
Sbjct: 191 RVENPDEVLDXILE-------EVAKFYHRG-IVHGDLSQYNVLVSEEGIWIIDFPQSVEV 242
Query: 274 DHPHALDFLREDCVHVSDFFKK 295
+ L D ++ +F +
Sbjct: 243 GEEGWREILERDVRNIITYFSR 264
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 110/274 (40%), Gaps = 27/274 (9%)
Query: 34 NH-IRPSPLEEWEGRMNVGMSNSVTTAIRESVRDMAIGKTKTSEKADRATVEQAIDPRTR 92
NH I P+PL E R+ G S+ V +I + I + K ++ +D
Sbjct: 29 NHEIVPTPLIEKIARLR-GGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLD---Y 84
Query: 93 MVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGD 152
+ L R + + I GKE+++ G++ +K+++ + F R V+ +
Sbjct: 85 LALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISF----RTVKAN 140
Query: 153 YRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAA 212
+ + + + A KE + L G P P H +VM + A
Sbjct: 141 RDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVD----AL 196
Query: 213 PRLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH----------- 261
P + + S+ Y ++I + L + L+HGD +E+NIL E
Sbjct: 197 PMRQVS--SVPDPASLYADLIALILRLAKHG-LIHGDFNEFNILIREEKDAEDPSSITLT 253
Query: 262 LYIIDVSQAVDLDHPHALDFLREDCVHVSDFFKK 295
IID Q V +DHP+A + D + FF++
Sbjct: 254 PIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFER 287
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 109/274 (39%), Gaps = 27/274 (9%)
Query: 34 NH-IRPSPLEEWEGRMNVGMSNSVTTAIRESVRDMAIGKTKTSEKADRATVEQAIDPRTR 92
NH I P+PL E R+ G S+ V +I + I + K ++ +D
Sbjct: 29 NHEIVPTPLIEKIARLR-GGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLD---Y 84
Query: 93 MVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGD 152
+ L R + + I GKE+++ G++ +K+++ + F R V+ +
Sbjct: 85 LALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISF----RTVKAN 140
Query: 153 YRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAA 212
+ + + + A KE + L G P P H +VM + A
Sbjct: 141 RDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVD----AL 196
Query: 213 PRLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH----------- 261
P + + S+ Y ++I + L + L+HGD +E+NIL E
Sbjct: 197 PMRQVS--SVPDPASLYADLIALILRLAKHG-LIHGDFNEFNILIREEKDAEDPSSITLT 253
Query: 262 LYIIDVSQAVDLDHPHALDFLREDCVHVSDFFKK 295
II Q V +DHP+A + D + FF++
Sbjct: 254 PIIIXFPQMVSMDHPNAEMYFDRDVQCIKRFFER 287
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 205 IGKAGWAAPRLKDAALSLDK---LREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH 261
+G + AP + + A++ + LR M + + L RCK G + EY + + E
Sbjct: 186 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEE-- 243
Query: 262 LYIIDVSQAVDLDHPHALDFLREDCVH------VSDFFKKH-GVA--VMTIRELFDFVVD 312
++ Q HP +L+ L+E VH + D + KH G+A +TI E +D +
Sbjct: 244 ----EIGQ-----HP-SLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAE 293
Query: 313 PTIADDSVD 321
++ V+
Sbjct: 294 ARLSAGCVE 302
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 200 LVMEFIGKAGWAAPRLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFE 259
+VME++G G + R K L + + +E++ A+ L+ LV+ DL NI+ E
Sbjct: 161 IVMEYVG--GQSLKRSKGQKLPVAEAIAYLLEILPALSYLHS-IGLVYNDLKPENIMLTE 217
Query: 260 GHLYIIDVS 268
L +ID+
Sbjct: 218 EQLKLIDLG 226
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 39/155 (25%)
Query: 112 STGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTW 171
S GK YH T GQ++A+K+ VL D +QG
Sbjct: 25 SFGKVKLAYHTTT--GQKVALKIINKKVLAKSD----MQGR------------------- 59
Query: 172 AEKEMRNLMRLKAAGIRCPTPYLLRLHVLVM---EFIGKAGWAAPRLKDAALSLDKLREG 228
E+E+ L L+ P++++L+ ++ E I +A L D + DK+ E
Sbjct: 60 IEREISYLRLLRH-------PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 112
Query: 229 ----YVEMIIAMRTLYQRCKLVHGDLSEYNILYFE 259
+ + II+ R K+VH DL N+L E
Sbjct: 113 EARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDE 147
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 39/152 (25%)
Query: 112 STGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTW 171
S GK YH T GQ++A+K+ VL D +QG
Sbjct: 16 SFGKVKLAYHTTT--GQKVALKIINKKVLAKSD----MQGR------------------- 50
Query: 172 AEKEMRNLMRLKAAGIRCPTPYLLRLHVLVM---EFIGKAGWAAPRLKDAALSLDKLREG 228
E+E+ L L+ P++++L+ ++ E I +A L D + DK+ E
Sbjct: 51 IEREISYLRLLRH-------PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 103
Query: 229 ----YVEMIIAMRTLYQRCKLVHGDLSEYNIL 256
+ + II+ R K+VH DL N+L
Sbjct: 104 EARRFFQQIISAVEYCHRHKIVHRDLKPENLL 135
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 39/155 (25%)
Query: 112 STGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTW 171
S GK YH T GQ++A+K+ VL D +QG
Sbjct: 26 SFGKVKLAYHTTT--GQKVALKIINKKVLAKSD----MQGR------------------- 60
Query: 172 AEKEMRNLMRLKAAGIRCPTPYLLRLHVLVM---EFIGKAGWAAPRLKDAALSLDKLREG 228
E+E+ L L+ P++++L+ ++ E I +A L D + DK+ E
Sbjct: 61 IEREISYLRLLRH-------PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 113
Query: 229 ----YVEMIIAMRTLYQRCKLVHGDLSEYNILYFE 259
+ + II+ R K+VH DL N+L E
Sbjct: 114 EARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDE 148
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 39/155 (25%)
Query: 112 STGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNPRKMVKTW 171
S GK YH T GQ++A+K+ VL D +QG
Sbjct: 20 SFGKVKLAYHTTT--GQKVALKIINKKVLAKSD----MQGR------------------- 54
Query: 172 AEKEMRNLMRLKAAGIRCPTPYLLRLHVLVM---EFIGKAGWAAPRLKDAALSLDKLREG 228
E+E+ L L+ P++++L+ ++ E I +A L D + DK+ E
Sbjct: 55 IEREISYLRLLRH-------PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ 107
Query: 229 ----YVEMIIAMRTLYQRCKLVHGDLSEYNILYFE 259
+ + II+ R K+VH DL N+L E
Sbjct: 108 EARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,439,145
Number of Sequences: 62578
Number of extensions: 372301
Number of successful extensions: 965
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 15
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)