BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020270
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 62/93 (66%)
Query: 1 MEKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
M + G++L EAA NG+ D+VK LI +GADV+ DSDG TPL HAA+ GH +VK L+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 61 APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A NA S + A ++GH+EV ++L++ G
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 53/86 (61%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L AA NG + VK LI GADV+ DSDG TPL HAA+ GH +VK L+ GA NA
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 68 SSNLSAGDFAMDSGHQEVFEVLLNAG 93
S + A ++GH+EV ++L++ G
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKG 126
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 50/86 (58%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L AA NG + VK LI GADV+ DSDG TPL HAA+ GH +VK L+ GA N
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 68 SSNLSAGDFAMDSGHQEVFEVLLNAG 93
S + D A + G++EV ++L G
Sbjct: 134 SDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 61/93 (65%)
Query: 1 MEKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
M + G++L EAA NG+ D+VK LI +GADV+ DSDG TPL +AAK GH +VK L+ G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 61 APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A NA S + +A GH+E+ ++L++ G
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 93
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G + VK LI GADV+ DSDG TPL +AAK GH +VK L+ GA NA S
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A GH+E+ ++L++ G
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKG 126
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G + VK LI GADV+ DSDG TPL +AAK GH +VK L+ GA N S
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ D A + G++E+ ++L G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 1 MEKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
M + G++L EAA NG+ D+VK L+ +GAD + DSDG TPL +AA+ GH +VK LL G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 61 APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A NA S + +A ++GH+E+ ++LL+ G
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG + VK L+ GAD + DSDG TPL +AA+ GH +VK LL GA NA S
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 103
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A ++GH+E+ ++LL+ G
Sbjct: 104 RTPLHYAAENGHKEIVKLLLSKG 126
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG + VK L+ GAD + DSDG TPL +AA+ GH +VK LL GA N S
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ D A + G++E+ ++L G
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQG 159
>pdb|3ORH|A Chain A, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|B Chain B, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|C Chain C, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|D Chain D, Human Guanidinoacetate N-Methyltransferase With Sah
Length = 236
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 135 KAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER 194
K +M WE P M A A A S GG +L +GFGM + + +Q+ H I+E + V++R
Sbjct: 39 KPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR 98
Query: 195 MLRTGWGEKNNVKIIF--GRWQDNLSQLES--YDGIFFDTYGEYYEDLREFHQ------H 244
+ W + K+I G W+D L +DGI +DTY E+ HQ H
Sbjct: 99 L--RDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY-PLSEETWHTHQFNFIKNH 155
Query: 245 LPKLLKPGGIYSYFN 259
+LLKPGG+ +Y N
Sbjct: 156 AFRLLKPGGVLTYCN 170
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 1 MEKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
M + G++L EAA NG+ D+VK L+ +GADV+ DSDG TPL AA+ GH +VK LL G
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 61 APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A NA S + A ++GH+EV ++LL+ G
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG + VK L+ GAD + DSDG TPL AA+ GH +VK LL GA NA S
Sbjct: 44 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 103
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A ++GH+EV ++LL+ G
Sbjct: 104 KTPLHLAAENGHKEVVKLLLSQG 126
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 47/83 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG + VK L+ GAD + DSDG TPL AA+ GH +VK LL GA N S
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ D A + G++EV ++L G
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQG 159
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA N
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL AG
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL AG
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAG 124
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ D A+ GH+++ EVL A
Sbjct: 135 KTPFDLAIREGHEDIAEVLQKAA 157
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D DGLTPL AA+LGH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + ++ A GH E+ EVLL G
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKHG 103
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL AG
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 54 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL AG
Sbjct: 114 YTPLHLAAREGHLEIVEVLLKAG 136
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 53/79 (67%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 87 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 157
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA N
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL AG
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 101
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL AG
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAG 124
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA NA
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 134
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ D A+D+G++++ EVL A
Sbjct: 135 KTPFDLAIDNGNEDIAEVLQKAA 157
>pdb|1XCJ|A Chain A, Guanidinoacetate Methyltransferase Containing S-
Adenosylhomocysteine And Guanidinoacetate
pdb|1XCL|A Chain A, Guanidinoacetate Methyltransferase Containing S-
Adenosylhomocysteine And Guanidine
Length = 235
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 135 KAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER 194
K +M WE P M + A A S GG +L +GFGM + + +QQ H I+E + V++R
Sbjct: 38 KPVMERWETPYMHSLAAAAASRGGRVLEVGFGMAIAASRVQQAPIKEHWIIECNDGVFQR 97
Query: 195 MLRTGWGEKNNVKIIFGRWQDNLSQLES--YDGIFFDTYGEYYEDLREFHQ------HLP 246
+ + + V + G W++ L +DGI +DTY E+ HQ H
Sbjct: 98 LQNWALKQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTY-PLSEETWHTHQFNFIKTHAF 156
Query: 247 KLLKPGGIYSYFN 259
+LLKPGGI +Y N
Sbjct: 157 RLLKPGGILTYCN 169
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 59/89 (66%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D DG TPL AA+ GH +V+ LL+AGA N
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A +A D ++D+G++++ E+L A
Sbjct: 63 AQDKFGKTAFDISIDNGNEDLAEILQKAA 91
>pdb|1KHH|A Chain A, Crystal Structure Of Guanidinoacetate Methyltransferase
From Rat Liver: A Template Structure Of Protein Arginine
Methyltransferase
pdb|1KHH|B Chain B, Crystal Structure Of Guanidinoacetate Methyltransferase
From Rat Liver: A Template Structure Of Protein Arginine
Methyltransferase
Length = 198
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 135 KAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER 194
K +M WE P M + A A S GG +L +GFGM + + +QQ H I+E + V++R
Sbjct: 1 KPVMERWETPYMHSLAAAAASRGGRVLEVGFGMAIAASRVQQAPIKEHWIIECNDGVFQR 60
Query: 195 MLRTGWGEKNNVKIIFGRWQDNLSQLES--YDGIFFDTYGEYYEDLREFHQ------HLP 246
+ + + V + G W++ L +DGI +DTY E+ HQ H
Sbjct: 61 LQNWALKQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTY-PLSEETWHTHQFNFIKTHAF 119
Query: 247 KLLKPGGIYSYFN 259
+LLKPGGI +Y N
Sbjct: 120 RLLKPGGILTYCN 132
>pdb|1P1B|A Chain A, Guanidinoacetate Methyltransferase
pdb|1P1B|B Chain B, Guanidinoacetate Methyltransferase
pdb|1P1B|C Chain C, Guanidinoacetate Methyltransferase
pdb|1P1B|D Chain D, Guanidinoacetate Methyltransferase
pdb|1P1C|A Chain A, Guanidinoacetate Methyltransferase With Gd Ion
pdb|1P1C|B Chain B, Guanidinoacetate Methyltransferase With Gd Ion
Length = 199
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 135 KAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER 194
K +M WE P M + A A S GG +L +GFGM + + +QQ H I+E + V++R
Sbjct: 2 KPVMERWETPYMHSLAAAAASRGGRVLEVGFGMAIAASRVQQAPIKEHWIIECNDGVFQR 61
Query: 195 MLRTGWGEKNNVKIIFGRWQDNLSQLES--YDGIFFDTYGEYYEDLREFHQ------HLP 246
+ + + V + G W++ L +DGI +DTY E+ HQ H
Sbjct: 62 LQNWALKQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTY-PLSEETWHTHQFNFIKTHAF 120
Query: 247 KLLKPGGIYSYFN 259
+LLKPGGI +Y N
Sbjct: 121 RLLKPGGILTYCN 133
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA N
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVL 89
A +A D ++D+G++++ E+L
Sbjct: 67 AQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D+DG TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + ++ A +GH E+ EVLL G
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ +D+DG TPL AAK GH +V+ LL+ GA NA
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG ++ V+ L+ +GADV+ D G+TPL AA GH +V+ LL+ GA NA +
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL G
Sbjct: 114 HTPLHLAAKYGHLEIVEVLLKHG 136
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA +GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + + A D+GH E+ EVLL G
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV+ D+DG TPL AA GH +V+ LL+ GA NA + L+ A D
Sbjct: 63 VEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAAD 122
Query: 80 SGHQEVFEVLLNAG 93
GH E+ EVLL G
Sbjct: 123 RGHLEIVEVLLKHG 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG ++ V+ L+ GADV+ D+ GLTPL AA GH +V+ LL+ GA NA
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D+ G TPL AA++GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLN--AGIQAELILGT 102
AL S + A GH E+ EVLL A + A+ +G+
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS 114
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ D G TPL AAK GH +V+ LL+ GA NA +
Sbjct: 54 AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A D+GH E+ EVLL G
Sbjct: 114 STPLHLAADTGHLEIVEVLLKYG 136
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G ++ V+ L+ GADV+ D+ G TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 53/83 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AARNG ++ VK L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA NA +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A +GH EV ++LL AG
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG 91
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGA 61
AARNG ++ VK L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+G TPL AA+ GH +VK LLEAGA NA + + A +GH EV ++LL AG
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A S ++ A D GH EV EVLL G
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ D +G TPL AA +GH +V+ LL+ GA NA
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ DS G+TPL AA GH +V+ LL+ GA NA +
Sbjct: 54 AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A + GH E+ EVLL G
Sbjct: 114 FTPLHLAANIGHLEIVEVLLKHG 136
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AARNG ++ VK L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA NA +
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A +GH EV ++LL AG
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG 91
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 53/83 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AARNG ++ VK L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA NA +
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A +GH EV ++LL AG
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAG 124
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGA 61
AARNG ++ VK L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA
Sbjct: 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+G TPL AA+ GH +VK LLEAGA NA + + A +GH EV ++LL AG
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D +G TPL AA+ GH +VK LLEAGA
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVL 89
A +A D ++D+G++++ E+L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GAD + +D G TPL AA +GH +V+ LL GA N
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ ++ + A GH E+ EVLL G
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ D++G TPL AA LGH +V+ LL+ GA NA ++
Sbjct: 42 AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG 101
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
++ A GH E+ EVLL G
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHG 124
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ D+ G+TPL AA GH +V+ LL+ GA NA
Sbjct: 75 AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D G++++ E+L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AAK GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + + A D+GH E+ EVLL G
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG ++ V+ L+ GADV+ D +G TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G ++ V+ L+ GADV+ +D+ G TPL AA GH +V+ LL+ GA NA
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL G
Sbjct: 114 FTPLHLAAYDGHLEIVEVLLKYG 136
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D+ GLTPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ + A GH E+ EVLL G
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ D+ G TPL AA +GH +V+ LL+ GA NA
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D+ GLTPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ + A GH E+ EVLL G
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ D+ G TPL AA +GH +V+ LL+ GA NA
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EA R G D+V+ L+ +GADV+ D G+TPL AAK GH +V+ LL+ GA N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A S + A GH E+ EVLL G
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G ++ V+ L+ GADV+ DS G TPL AA +GH +V+ LLE GA NA
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ LI +GADV+ D+ GLTPL AA GH +V+ LL+ GA +
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A +GH E+ EVLL G
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ FD G TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEV 85
+A D ++D+G++++
Sbjct: 147 KTAFDISIDNGNEDL 161
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGI 94
SD L+ AA+ G + V+ L+ GA NA+ ++ L+ A SGH E+ EVLL G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 95 QAE 97
+
Sbjct: 72 DVD 74
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A S ++ A GH E+ EVLL G
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V+ L+ +GADV+ DS G TPL AAK GH +V+ LL+ GA NA
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 49/83 (59%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ DS G+TPL AA+ GH +V+ LL+ GA NA S
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL G
Sbjct: 114 FTPLHLAAKRGHLEIVEVLLKNG 136
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EA R G D+V+ L+ +GADV+ D G+TPL AAK GH +V+ LL+ GA N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL G
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G ++ V+ L+ GADV+ D G TPL AA +GH +V+ LLE GA NA
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EA R G D+V+ L+ +GADV+ D G+TPL AAK GH +V+ LL+ GA N
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL G
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G ++ V+ L+ GADV+ D G TPL AA +GH +V+ LLE GA NA
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 54/89 (60%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAA G D+V+ L+ +GADV+ D +GLTPL AA G +V+ LL+ GA N
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A S+ ++ A GH E+ EVLL G
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG ++ V+ L+ +GADV+ DS G+TPL AA GH +V+ LL+ GA NA +
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG 105
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG--IQAELILGTIA 104
+ A SG E+ EVLL G + A+ LG A
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTA 141
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G ++ V+ L+ GADV+ +D G TPL AA G +V+ LL+ GA NA +
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALG 138
Query: 71 LSAGDFAMDSGHQEVFEVL 89
L+A D +++ G +++ E+L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D+ G TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ + ++ A GH E+ EVLL G
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA NG ++ V+ L+ +GADV+ D G+TPL AA GH +V+ LL+ GA NA
Sbjct: 54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH E+ EVLL G
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNG 136
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ D +G TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
SD L+ AA+ G + V+ L+ GA NA +S + A +GH E+ EVLL G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D GLTPL A GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ + + A GH E+ EVLL G
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A +G ++ V+ L+ +GADV+ D+ G TPL AA +GH + + LL+ GA NA
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++ +G++++ E+L
Sbjct: 114 KTAFDISIGNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
SD L+ AA+ G + V+ L+ GA NA L+ A GH E+ EVLL G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L AA+NG ++VK L+ GADV+ DG TPL AAK GHA +VK LL GA NA S
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 68 SSNLSAGDFAMDSGHQEVFEVL 89
+ A +GH E+ ++L
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLL 94
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
DG TPL +AAK GHA VK LL GA NA S + A +GH E+ ++LL G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
AA+NG + VK L+ GADV+ DG TP A K GH +VK L GA NA S
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + + A GH E+ EVLL G
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLLKNG 103
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 15 GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAG 74
G ++ V+ L+ +GADV+ +D+ G TPL AA GH +V+ LL+ GA NA + ++
Sbjct: 58 GHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPL 117
Query: 75 DFAMDSGHQEVFEVLLNAG 93
A + GH E+ EVLL G
Sbjct: 118 HLAANRGHLEIVEVLLKYG 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ D +G+TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++++G++++ E+L
Sbjct: 147 KTAFDISINNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA GH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL G
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ D+ G TPL AA GH +V+ LL+ GA NA
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L +GADV+ D G TPL AA LGH +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A ++ + A + H E+ EVLL G
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ + G TPL AA H +V+ LL+ GA NA
Sbjct: 54 AAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D GLTPL AA H +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A+ + + GH E+ EVLL G
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA N ++ V+ L+ +GADV+ D+ G TPL A GH +V+ LL+ GA NA
Sbjct: 54 AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFG 113
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGI 94
SD L+ AA+ G + V+ L+ GA NA L+ A + H E+ EVLL G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 95 QAELI 99
I
Sbjct: 72 DVNAI 76
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G TPL AA H +V+ LL+ GA N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + + A GH E+ EVLL G
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV+ D+DG TPL AA GH +V+ LL+ GA NA +A D ++D
Sbjct: 63 VEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISID 122
Query: 80 SGHQEVFEVL 89
+G++++ E+L
Sbjct: 123 NGNEDLAEIL 132
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G +L EAAR G D+V+ L+ +GADV+ D+ G TPL AA GH +V+ LL+ GA +
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A + A GH E+ EVLL G
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ +GADV+ DSDG+TPL AAK G+ +V+ LL+ GA NA
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G ++ V+ L+ GADV D G TPL AA GH +V+ LL+ GA NA+ S
Sbjct: 54 AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDG 113
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
++ A G+ E+ EVLL G
Sbjct: 114 MTPLHLAAKWGYLEIVEVLLKHG 136
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGI 94
SD L+ AA+ G + V+ L+ GA NA ++ + A SGH E+ EVLL G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 95 QAE 97
+
Sbjct: 72 DVD 74
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
G++L EAAR G D+V+ L+ +GADV+ D G+TPL GH +++ LL+ A N
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 65 ALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
A S + A GH E+ EVLL G
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ V+ L+ GADV+ D G TPL AA+ GH +V+ LL+ GA NA
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 14 NGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSA 73
NG ++ ++ L+ ADV+ D G TPL AA GH +V+ LL+ GA NA+ +
Sbjct: 57 NGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTP 116
Query: 74 GDFAMDSGHQEVFEVLLNAG 93
A + GH E+ EVLL G
Sbjct: 117 LHLAAEDGHLEIVEVLLKYG 136
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSD--GLTPLMHAAKLGHANLVKTLLEAGAP 62
G++L EAAR G D+V+ L+ +GA F +D G +PL AA+ GH + + LL AG
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 63 WNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+A + + + A GH + EVLL G
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHG 90
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G + V+ L+ GADV+ D +T L A + H +V+ L++ GA + S
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+A D ++D+G++++ E+L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 41 LMHAAKLGHANLVKTLLEAGAPWNA--LSSSNLSAGDFAMDSGHQEVFEVLLNAGI 94
L+ AA+ G + V+ L+ GAP+ L +S L A GH EVLL AG+
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLH---LAAQYGHFSTTEVLLRAGV 58
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L A G D VK L+ G DV+ +D +G TPL++A H VK LLE+GA +
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 68 SSNLSAGDFAMDSGHQEVFEVL 89
S ++ D A+ G++ V +V+
Sbjct: 149 DSGYNSMDLAVALGYRSVQQVI 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 30 VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVL 89
+++ D +G TPLM AA G +V+ LL+ GA L SA A G+ ++ ++L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 90 LNAGI 94
L+ G+
Sbjct: 105 LDCGV 109
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G I V+ L+ +GAD + L A G+ ++VK LL+ G N +
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A+ H + ++LL +G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESG 141
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L A G D VK L+ G DV+ +D +G TPL++A H VK LLE+GA +
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 68 SSNLSAGDFAMDSGHQEVFEVL 89
S ++ D A+ G++ V +V+
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVI 154
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 30 VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVL 89
+++ D +G TPLM AA G +V+ LL+ GA L SA A G+ ++ ++L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 90 LNAGI 94
L+ G+
Sbjct: 89 LDCGV 93
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G I V+ L+ +GAD + L A G+ ++VK LL+ G N +
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A+ H + ++LL +G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESG 125
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L A G D VK L+ G DV+ +D +G TPL++A H VK LLE+GA +
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 68 SSNLSAGDFAMDSGHQEVFEVL 89
S ++ D A+ G++ V +V+
Sbjct: 131 DSGYNSMDLAVALGYRSVQQVI 152
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 30 VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVL 89
+++ D +G TPLM AA G +V+ LL+ GA L SA A G+ ++ ++L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 90 LNAGI 94
L+ G+
Sbjct: 87 LDCGV 91
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G I V+ L+ +GAD + L A G+ ++VK LL+ G N +
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A+ H + ++LL +G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESG 123
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G +D L+ +GA++ D TPLM AA+ H VK L++AGA + +
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ A GH EV + LL+ G
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNG 100
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGA 61
E + L EAA N ++ VK LI +GA V D++G T L AAK GH +V+ LL G
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 62 -PWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
N + +A + H ++ ++LL+ G
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 11 AARNGDIDKVKALIGSGA-DVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69
AA+ G + V+ L+ +G DV+ D G TP++ A + H +LVK LL G+ N +
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143
Query: 70 NLSAGDFAMDSGHQEVFEVLLNA 92
+A SG ++ E+LL A
Sbjct: 144 ENICLHWAAFSGCVDIAEILLAA 166
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 39 TPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+PL AA+ GH ++ L++AGA + S + A ++ H E + L+ AG
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G + K L+ + A V+ D TPL AA++GH N+VK LLE A N +++
Sbjct: 54 AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+ A GH E LL
Sbjct: 114 HTPLHIAAREGHVETVLALL 133
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A+ G+I VK L+ ADV+ G +PL AA+ GH ++V LL+ GA N +SS
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377
Query: 71 LSAGDFAMDSGHQEVFEVL 89
+ A G+ V +VL
Sbjct: 378 TTPLAIAKRLGYISVTDVL 396
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ ++ ++L+ G + G+TPL AA+ GHA +V LL A N + S
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 71 LSAGDFAMDSGHQEVFEVLLNAGIQAE 97
L+ GH V +VL+ G+ +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVD 305
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G ++ V AL+ A + G TPL AAK G + + LLE A NA +
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
L+ A+ + ++ ++LL G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRG 202
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AAR G + VK L+ + A+ + + G TPL AA+ GH V LLE A ++
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+ A G V E+LL
Sbjct: 147 FTPLHVAAKYGKVRVAELLL 166
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A + ++D VK L+ G +G TPL AAK + ++LL+ G NA S
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 71 LSAGDFAMDSGHQEVFEVLLN 91
++ A GH E+ +LL+
Sbjct: 246 VTPLHLAAQEGHAEMVALLLS 266
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 15 GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAG 74
G + VK L+ GA + + TPL AA+ GH + K LL+ A NA + + +
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 75 DFAMDSGHQEVFEVLL 90
A GH + ++LL
Sbjct: 85 HCAARIGHTNMVKLLL 100
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTL 56
L +AA+ G D V L+ +GA + SDG TPL A +LG+ ++ L
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 12 ARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNL 71
A+ G + LI G V G TPL A+ G+ LVK LL+ A NA +
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 345
Query: 72 SAGDFAMDSGHQEVFEVLLNAG 93
S A GH ++ +LL G
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNG 367
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 38 LTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLL 90
LTPL A+ +GH +VK LL+ GA N + + A +GH EV + LL
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL 67
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA+ G + V L+ A+ + + GLTPL A+ GH + L++ G +A +
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311
Query: 71 LSAGDFAMDSGHQEVFEVLL--NAGIQAELILG 101
+ A G+ ++ + LL A + A+ LG
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 1 MEKEGEQLCE----------AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHA 50
+EKE Q C AA+ G + + L+ A + +GLTPL A +
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 51 NLVKTLL-EAGAP----WNALSSSNLSA 73
++VK LL G+P WN + +++A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAA 220
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A +NGD+D+VK + G DV+ G PL +AA G +++ LL GA NA +
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
++ A+ GH ++LL+ G
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKG 91
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ ++ L+ GAD++ D +TPL+ A GH + VK LL GA
Sbjct: 42 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 101
Query: 71 LSA 73
L+A
Sbjct: 102 LTA 104
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A +NGD+D+VK + G DV+ G PL +AA G +++ LL GA NA +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
++ A+ GH ++LL+ G
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKG 96
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G ++ ++ L+ GAD++ D +TPL+ A GH + VK LL GA
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 71 LSA 73
L+A
Sbjct: 107 LTA 109
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 4 EGEQLCE-AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAP 62
GE L A+ GDI V+ L+ +G+D + D G TPL A GH +V+ LL+ A
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 63 WNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
N N S A +GH ++ ++LL+ G
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L EA +G + V+ L+ A V+ +PL AAK GH ++VK LL GA NA++
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 68 SSNLSAGDFAMDSGHQEVF 86
L D+ D + +
Sbjct: 107 IFGLRPVDYTDDESMKSLL 125
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL--- 66
+AAR G +D +K L+ GADV+ DS G P+ A + GH+++V L AP + L
Sbjct: 80 DAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLHHR 135
Query: 67 SSSNLSAGDFAMDSGHQEVFEVL 89
+S L+ + A G Q + ++L
Sbjct: 136 DASGLTPLELARQRGAQNLMDIL 158
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ GA + D+ G +P+ AA+ G + +K L+E GA NAL S+ A+ GH
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 83 QEVFEVL 89
V L
Sbjct: 120 SSVVSFL 126
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSD-GLTPLMHAAKLGHAN-----LVKTLLE 58
G L AA G ID VK L+ G + F +D G T L+ A L N +VK L+E
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 59 AGAPWNALSSSNLSAGDFAMDSGHQEVFEVL 89
GA + +S +A D+A G+ E+ ++L
Sbjct: 167 NGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A N DI+ KALI GAD++ +S +P ++A G ++ +L+ P L+ N
Sbjct: 46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP--DLNKHN 103
Query: 71 LSAGDF---AMDSGHQEVFEVLLNAG 93
G+ A + GH + ++LL G
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDG 129
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL--- 66
+AAR G +D +K L+ GADV+ DS G P+ A + GH+++V L AP + L
Sbjct: 82 DAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLHHR 137
Query: 67 SSSNLSAGDFAMDSGHQEVFEVL 89
+S L+ + A G Q + ++L
Sbjct: 138 DASGLTPLELARQRGAQNLMDIL 160
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ GA + D+ G +P+ AA+ G + +K L+E GA NAL S+ A+ GH
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 83 QEVFEVL 89
V L
Sbjct: 122 SSVVSFL 128
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ GA+V+ + +G TPL+ A+K G + +VK LLE GA +A + L+A A G
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 83 QEVFEVL 89
QEV ++
Sbjct: 180 QEVIKIF 186
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A +N + + L+ G++V+ D G TPLM + G++ + LLE GA N +
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG--IQAELILGTIARAGNK 109
+ A G E+ + LL G I A + G A A +
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 EGEQ-LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA 59
EGE L A++ G + VK L+ GAD+S D GLT A G ++K E
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A + G VK L+ S A + D G TPL++A GH LV LL+ GA NA ++
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG 185
Query: 71 LSAGDFAMDSGHQEVFEVLLNAGIQAELILGTIARAGNKNSNSNGDYLE 119
+A A+ H V E+LL G + +L R + N +E
Sbjct: 186 NTALHEAVIEKHVFVVELLLLHGASVQ-VLNKRQRTAVDCAEQNSKIME 233
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA +G D + L+ GA+ ++D PL A + GH +VK LL++ A N S
Sbjct: 93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A GH E+ +LL G
Sbjct: 153 NTPLIYACSGGHHELVALLLQHG 175
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 8 LCEAARNGDIDKVKALI-GSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL 66
LC+ + K A + SG V+ DG +PL AA G A+L+ LL+ GA A
Sbjct: 56 LCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGAR 115
Query: 67 SSSNLSAGDFAMDSGHQEVFEVLLNAGIQ 95
++ A GH +V + LL++ +
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAK 144
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A +G +D VKAL+ ADV+ D DG T LM A + GH + LL A+ S +
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL-------AVPSCD 242
Query: 71 LSAGD--------FAMDSGHQEVFEVL 89
+S D A+D+G E+ +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPW 63
+G A +GD ++V L+ GAD++Y + DGLT L A + ++VK L+E GA
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 64 NALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
N + A G+ ++ E L++ G
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGL--TPLMHAAKLGHANLVKTLLEA 59
E + ++L EAAR+G+ +K+ AL+ + +V+ SDG TPL AA +V+ LL+
Sbjct: 22 EYKKDELLEAARSGNEEKLMALL-TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80
Query: 60 GAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
GA +A L A GH EV E+LL G
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ GA+V+ + D +TPL AA+ H ++++ L + GA NAL S +A A +GH
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 83 QEVFEVLLNAGIQAELI 99
+ +LL+ G +I
Sbjct: 293 LQTCRLLLSYGSDPSII 309
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV D GL PL +A GH + + LL+ GA NA+ + A
Sbjct: 74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133
Query: 80 SGHQEVFEVLLNAGIQAELI 99
EV +LL+ G L+
Sbjct: 134 KNRVEVCSLLLSHGADPTLV 153
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G + VKAL+G GA V+ + +G TPL +AA + LLE GA +A
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 139
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+A A G+ ++ +LL
Sbjct: 140 ATAMHRAAAKGNLKMIHILL 159
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 8 LCEAARNGDIDKVK-ALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL 66
+C A +G ++++K +++ + + D D T L A GH +V+ LL+ G P N
Sbjct: 10 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 67 SSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELI 99
+ S A +G E+ + LL G Q +
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 102
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A G + V+ L+ G V+ D G +PL AA G +VK LL GA NA++ +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 106
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A E+ +LL G
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGG 129
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G + VKAL+G GA V+ + +G TPL +AA + LLE GA +A
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE 140
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+A A G+ ++ +LL
Sbjct: 141 ATAMHRAAAKGNLKMIHILL 160
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 8 LCEAARNGDIDKVK-ALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL 66
+C A +G ++++K +++ + + D D T L A GH +V+ LL+ G P N
Sbjct: 11 VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 70
Query: 67 SSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELI 99
+ S A +G E+ + LL G Q +
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 103
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A G + V+ L+ G V+ D G +PL AA G +VK LL GA NA++ +
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG 107
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A E+ +LL G
Sbjct: 108 CTPLHYAASKNRHEIAVMLLEGG 130
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69
+AAR G +D +K L+ GADV+ D G P+ A + GH +V + L A + + +
Sbjct: 80 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHRRDAR 138
Query: 70 NLSAGDFAMDSGHQEVFEVL 89
L+ + A+ G Q++ ++L
Sbjct: 139 GLTPLELALQRGAQDLVDIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69
+AAR G +D +K L+ GADV+ D G P+ A + GH +V + L A + + +
Sbjct: 74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV-SFLAAESDLHRRDAR 132
Query: 70 NLSAGDFAMDSGHQEVFEVL 89
L+ + A+ G Q++ ++L
Sbjct: 133 GLTPLELALQRGAQDLVDIL 152
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 15 GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNL-SA 73
G + VK L+ G +V+ DSDG TPL AA + + K L+E+GA A++ S++ +A
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Query: 74 GDFA--MDSGHQEVFEVLLNAGIQAEL 98
D M+ G+ + + L G+Q ++
Sbjct: 141 ADKCEEMEEGYTQCSQFLY--GVQEKM 165
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L +++ G+ D V+ +I D S + +G+T L +A GH +VK L++ G NA
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 68 SSNLSAGDFAMDSGHQEVFEVLLNAG 93
S + A + +V + L+ +G
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 15 GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNL-SA 73
G + VK L+ G +V+ DSDG TPL AA + + K L+E+GA A++ S++ +A
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140
Query: 74 GDFA--MDSGHQEVFEVLLNAGIQAEL 98
D M+ G+ + + L G+Q ++
Sbjct: 141 ADKCEEMEEGYTQCSQFLY--GVQEKM 165
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L +++ G+ D V+ +I D S + +G+T L +A GH +VK L++ G NA
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 68 SSNLSAGDFAMDSGHQEVFEVLLNAG 93
S + A + +V + L+ +G
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESG 126
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric
Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric
Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric
Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric
Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 6 EQLCEAARNGDIDKVKALIGSGADVSYFDSDGL--TPLMHAAKLGHANLVKTLLEAGAPW 63
QL EAA+ GD++ VK L + V+ D +G TPL AA ++V+ LL+ GA
Sbjct: 10 RQLLEAAKAGDVETVKKLC-TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68
Query: 64 NALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+A L A GH EV E+L+ G
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV D GL PL +A GH + + L++ GA N + A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 80 SGHQEVFEVLLNAG 93
G E+ ++LL G
Sbjct: 118 KGKYEICKLLLQHG 131
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 6 EQLCEAARNGDIDKVKALIGSGADVSYFDSDGL--TPLMHAAKLGHANLVKTLLEAGAPW 63
QL EAA+ GD++ VK L + V+ D +G TPL AA ++V+ LL+ GA
Sbjct: 12 RQLLEAAKAGDVETVKKLC-TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 70
Query: 64 NALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+A L A GH EV E+L+ G
Sbjct: 71 HAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV D GL PL +A GH + + L++ GA N + A
Sbjct: 60 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 119
Query: 80 SGHQEVFEVLLNAG 93
G E+ ++LL G
Sbjct: 120 KGKYEICKLLLQHG 133
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 6 EQLCEAARNGDIDKVKALIGSGADVSYFDSDGL--TPLMHAAKLGHANLVKTLLEAGAPW 63
QL EAA+ GD++ VK L + V+ D +G TPL AA ++V+ LL+ GA
Sbjct: 14 RQLLEAAKAGDVETVKKLC-TVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 72
Query: 64 NALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+A L A GH EV E+L+ G
Sbjct: 73 HAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V+ L+ GADV D GL PL +A GH + + L++ GA N + A
Sbjct: 62 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 80 SGHQEVFEVLLNAG 93
G E+ ++LL G
Sbjct: 122 KGKYEICKLLLQHG 135
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ +GA+V+ DS G PL HA LGH L L+ GA A S AM++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 83 QEVFEVLLNAGIQ 95
++ +L A ++
Sbjct: 314 ADIVTLLRLAKMR 326
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 20 VKALIG-SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAM 78
VK L+G G++ D DG TP+ AA+ G +V L++ GA A+ +++ +A A
Sbjct: 295 VKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQ 354
Query: 79 DSGHQEVFEVL 89
+ H + ++
Sbjct: 355 ANNHHNIVDIF 365
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 17 IDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSA 73
+ + K I +GADV+ D D TPL A LV L +AGA + S SA
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSA 202
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ +GA+V+ DS G PL HA LGH L L+ GA A S AM++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 83 QEVFEVL 89
++ +L
Sbjct: 314 ADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82
L+ +GA+V+ DS G PL HA LGH L L+ GA A S AM++ +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 83 QEVFEVL 89
++ +L
Sbjct: 314 ADIVTLL 320
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 132 SDSKAIMMAWEKPLMEA--HAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTH-TILEAH 188
S+ +A+ ++ + +E H + G +L G G+G + + +P T ++
Sbjct: 11 SEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS 70
Query: 189 PEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL----ESYDGIFFDTYGEYYEDLREFHQH 244
PE E+ EKN +K + Q N+ L S+D IF E+ + E +
Sbjct: 71 PESLEKARENT--EKNGIKNV-KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKS 127
Query: 245 LPKLLKPGGIYSYFNGLCGGNAFFH 269
L K+LKPGG + G G+ +FH
Sbjct: 128 LKKVLKPGGTITVIEG-DHGSCYFH 151
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 LCEAARNGDIDKVK-ALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL 66
+C A +G +D++K ++ + + D D T L A GH +V+ LL+ G P N
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 67 SSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+ S A +G E+ + LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKG 96
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G + VKAL+ GA V+ + +G TPL +AA + LLE GA +A +
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+A A G+ ++ +LL
Sbjct: 140 ATAMHRAAAKGNLKMVHILL 159
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A G + V+ L+ G V+ D G +PL AA G +VK LL GA NA++ +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG 106
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A E+ +LL G
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGG 129
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
AA G + VKAL+ GA V+ + +G TPL +AA + LLE GA +A +
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 71 LSAGDFAMDSGHQEVFEVLL 90
+A A G+ ++ +LL
Sbjct: 140 ATAMHRAAAKGNLKMVHILL 159
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 8 LCEAARNGDIDKVK-ALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL 66
+C A +G +D++K ++ + + D D T L A GH +V+ LL+ G P N
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 67 SSSNLSAGDFAMDSGHQEVFEVLLNAG 93
+ S A +G E+ + LL G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKG 96
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A G + V+ L+ G V+ D G +PL AA G +VK LL GA NA++ +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+ +A E+ +LL G
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGG 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 10 EAARNGDIDKVKALIGSGAD-VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSS 68
+ A G++D++K + G + V+ D G TPL+ A+ G V+ LLE GA + L+
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 69 SNLSAGDFAMDSGHQEVFEVLLNAGI 94
SA A G+ ++ +LL +
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDV 93
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTL 56
G L A R + V+AL+ GAD++ G TP+ A LG+ + + +
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 2 EKEGEQLCE-AARNGDIDKVKALIGSGADVSYFDSD-GLTPLMHAAKLGHANLVKTLLEA 59
+KE L AA N ID VK I GA V D TPL A + GH ++V L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 60 GAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELI 99
GA + + S A GH + L+ G +++
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHA-NLVKTLLEAGAPWNALSSS 69
AA+ G V LI G DV D +G+TPLM AA H+ + + LL N
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175
Query: 70 NL-SAGDFAMDSGHQEVFEVLLNAGIQAE 97
+ +A +A+ +G+ V +LL AG +
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVD 204
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 10 EAARNGDIDKVKALIGSGAD-VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSS 68
+ A G++D++K + G + V+ D G TPL+ A+ G V+ LLE GA + L+
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67
Query: 69 SNLSAGDFAMDSGHQEVFEVLLNAGI 94
SA A G+ ++ +LL +
Sbjct: 68 ERESALSLASTGGYTDIVGLLLERDV 93
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L
With 2-5a Bound
Length = 337
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSD-GLTPLMHAAKLGHANLVKTLLEAGA 61
L +A +N D+D V+ L+ GA+V++ + + G TPL +A ++ ++V+ LL GA
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN------ 64
AA G + +K + GADV+ D G T M AA G +K L + GA N
Sbjct: 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 158
Query: 65 ----ALSSSNLSAGDFAMDSGHQEVFEVLLN 91
L +A A + GH EV ++LL+
Sbjct: 159 EDQERLRKGGATALMDAAEKGHVEVLKILLD 189
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 18 DKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
D V+ L+ GAD +G TP + AA G L+K L GA N
Sbjct: 73 DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
L+ GADV+ G TPL+ A + H LV+ LLE
Sbjct: 225 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A R G V+ LI GA ++ + TPL AA GH ++V+ LL+ A NA++
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 100
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+A G +V E L+ G
Sbjct: 101 NVPLHYACFWGQDQVAEDLVANG 123
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70
A R G V+ LI GA ++ + TPL AA GH ++V+ LL+ A NA++
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 71 LSAGDFAMDSGHQEVFEVLLNAG 93
+A G +V E L+ G
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANG 128
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
+AAR G +D ++ L+ ADV+ D++G PL AAK GH +V+ L++
Sbjct: 76 DAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSD-GLTPLMHAAKLGHANLVKTLLEAGA 61
L +A +N D+D V+ L+ GA+V++ + + G TPL +A ++ ++V+ LL GA
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN------ 64
AA G + +K + GADV+ D G T M AA G +K L + GA N
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138
Query: 65 ----ALSSSNLSAGDFAMDSGHQEVFEVLLN 91
L +A A + GH EV ++LL+
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLD 169
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 18 DKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
D V+ L+ GAD +G TP + AA G L+K L GA N
Sbjct: 53 DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
L+ GADV+ G TPL+ A + H LV+ LLE
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
+AAR G +D ++ L+ + ADV+ D++G PL AAK GH +V+ L++
Sbjct: 76 DAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With
Elonginb And Elonginc
Length = 261
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69
EAA +G ++ LI G V+ +D ++PL A GH + VK LL+ GA N +++
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 68
Query: 70 NLSAGDFAMDSGHQEVFEVLLN--AGIQAE 97
+ A SG + +LL A +Q E
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASVQPE 98
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
EAAR G ++ V +LI G ++ + S TPL A + VK LLE+GA N
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
A +G D V L+ GA V +SD +P+ AA+ GH V +L+ G
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYG 124
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 LCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNA 65
L AA G + ++ L G G + V++ D G TPL HA GH + L+E GA ++
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 66 LSSSNLSAGDFAMDSGHQEVF 86
+ + A D A++ ++ F
Sbjct: 204 VDNKGAKAEDVALNEQVKKFF 224
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 8 LCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNA 65
L AA G + ++ L G G + V++ D G TPL HA GH + L+E GA ++
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 66 LSSSNLSAGDFAMDSGHQEVFEVLLNAGIQA 96
+ + A D A++ ++V + LN + A
Sbjct: 204 VDNKGAKAEDVALN---EQVKKFFLNNVVDA 231
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 18 DKVKALIGSGADVSYFD-SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDF 76
+ V+ L+ GAD+ D G +PL+HA + ++V+ LL+ GA NA S SA
Sbjct: 130 ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 77 AMDSGHQEVFEVLLNAGIQAEL 98
A G + L+ +G + L
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSL 211
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
+AAR G +D ++ L+ ADV+ D++G PL AAK GH +V+ L++
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 8 LCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNA 65
L AA G + ++ L G G + V++ D G TPL HA GH + L+E GA ++
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203
Query: 66 LSSSNLSAGDFAMDSGHQEVF 86
+ + A D A++ ++ F
Sbjct: 204 VDNKGAKAEDVALNEQVKKFF 224
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
+AAR G +D ++ L+ ADV+ D++G PL AAK GH +V+ L++
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLE 58
+AAR G +D ++ L+ ADV+ D++G PL AAK GH +V+ L++
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN 64
EAAR G ++ V +LI G ++ + S TPL A + VK LLE+GA N
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 10 EAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69
EAA +G ++ LI G V+ +D ++PL A GH + VK LL+ GA N +++
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD 124
Query: 70 NLSAGDFAMDSGHQEVFEVLLN--AGIQAELILGT 102
+ A SG + +LL A +Q E L +
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS 159
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLL 90
DG TPL+ AA+L +V+ L+ A A NA +S +A +A + E +LL
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 222 SYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGL--CGGNAFFHVVYC 273
YDG + Y ++YED+ + + P +K G +Y Y++ L G AF V C
Sbjct: 17 KYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRC 70
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 6 EQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
E++ AAR G D+V+ LI +G + + G T L A K G + K L G
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 201 GEKNNVKIIFGRWQDNLSQLES-YDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYS 256
G +N + I QD S LE+ D I F E+ D R Q L +L+PGG+ S
Sbjct: 114 GVSDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLS 170
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 215 DNLSQLE----SYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNA 266
DNL Q + SYD F D Y ++H+ L KL+K GGI +Y N L GG
Sbjct: 136 DNLLQGQESEGSYDFGFVDADKPNY---IKYHERLMKLVKVGGIVAYDNTLWGGTV 188
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 201 GEKNNVKIIFGRWQDNLSQLES-YDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYS 256
G +N + I QD S LE+ D I F E+ D R Q L +L+PGG+ S
Sbjct: 114 GVSDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLS 170
>pdb|1B93|A Chain A, Methylglyoxal Synthase From Escherichia Coli
pdb|1B93|B Chain B, Methylglyoxal Synthase From Escherichia Coli
pdb|1B93|C Chain C, Methylglyoxal Synthase From Escherichia Coli
pdb|1EGH|A Chain A, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|B Chain B, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|C Chain C, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|D Chain D, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|E Chain E, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1EGH|F Chain F, Structure Of Methylglyoxal Synthase Complexed With The
Competitive Inhibitor 2-Phosphoglycolate
pdb|1IK4|A Chain A, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|B Chain B, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|C Chain C, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|D Chain D, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|E Chain E, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
pdb|1IK4|F Chain F, X-Ray Structure Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolohydroxamic Acid
Length = 152
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 19 KVKALIGSGA-DVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFA 77
+V ALI G DV F D L + H VK LL WN ++N++ DF
Sbjct: 73 QVGALISEGKIDVLIFFWDPLNAVPHDPD------VKALLRLATVWNIPVATNVATADFI 126
Query: 78 MDSGH 82
+ S H
Sbjct: 127 IQSPH 131
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 20 VKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79
V LI +GA+V+ DS G TPL AA + L++ GA A+ ++ LS G A +
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA---AIFATTLSDGATAFE 126
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 236 EDLREFHQHLPKLLKPGG--IYSYFNGLCGGNAFFHVVY 272
ED R+FHQ L KP G +Y+ F G C + +F + Y
Sbjct: 148 EDCRDFHQVAQDLCKPFGADVYARFKGWC--DEYFFIPY 184
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 236 EDLREFHQHLPKLLKPGG--IYSYFNGLCGGNAFFHVVY 272
ED R+FHQ L KP G +Y+ F G C + +F + Y
Sbjct: 148 EDCRDFHQVAQDLCKPFGADVYARFKGWC--DEYFFIPY 184
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 489 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 548
Query: 181 THTILE 186
+HT +E
Sbjct: 549 SHTEME 554
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 489 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 548
Query: 181 THTILE 186
+HT +E
Sbjct: 549 SHTEME 554
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 489 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 548
Query: 181 THTILE 186
+HT +E
Sbjct: 549 SHTEME 554
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 474 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 533
Query: 181 THTILE 186
+HT +E
Sbjct: 534 SHTEME 539
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 489 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 548
Query: 181 THTILE 186
+HT +E
Sbjct: 549 SHTEME 554
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 473 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 532
Query: 181 THTILE 186
+HT +E
Sbjct: 533 SHTEME 538
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 488 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 547
Query: 181 THTILE 186
+HT +E
Sbjct: 548 SHTEME 553
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 470 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 529
Query: 181 THTILE 186
+HT +E
Sbjct: 530 SHTEME 535
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 470 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 529
Query: 181 THTILE 186
+HT +E
Sbjct: 530 SHTEME 535
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 480 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 539
Query: 181 THTILE 186
+HT +E
Sbjct: 540 SHTEME 545
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 488 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 547
Query: 181 THTILE 186
+HT +E
Sbjct: 548 SHTEME 553
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG 60
L +AA D VK L+ SG D S FD G T L +A G+ VK ++
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|B Chain B, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|C Chain C, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|D Chain D, Crystal Structure Of The Ddb1 Bpb Domain
Length = 323
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/66 (19%), Positives = 35/66 (53%)
Query: 121 RVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPV 180
+++ + +LV + KA++ W++P + + A C+ ++ +G + + Q+ +
Sbjct: 84 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQI 143
Query: 181 THTILE 186
+HT +E
Sbjct: 144 SHTEME 149
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67
L EAA+ G++ ++ + + V+ D G T L A GH ++V+ L P L+
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFT--QPNIELN 134
Query: 68 SSNLSAGDFAMDS----GHQEVFEVLLNAGIQAEL 98
N GD A+ + G+ ++ ++LL G + +L
Sbjct: 135 QQN-KLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 222 SYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNA 266
SYD IF D + Y + +H+ L L+K GG+ Y N L G+
Sbjct: 156 SYDFIFVDADKDNYLN---YHKRLIDLVKVGGVIGYDNTLWNGSV 197
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 35 SDGLTPLMHAAKLGHANLVKTLLEAGAP-------WNALSS--------SNLSAGDFAMD 79
S + ++HA LG + A WN L S S + GD+
Sbjct: 165 SKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPG 224
Query: 80 SGHQEVFEVLLNAGIQAELILGTIA 104
G+ + F L GI L+LG IA
Sbjct: 225 EGYNQKFRELYKIGITCYLLLGLIA 249
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 118 LEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAH-----AKAICSGGGHI 160
++++ F G LVD+D K I +A ++ H K +CS G I
Sbjct: 252 VDEKTDFEPGVLVDADKKGISIAAGSGILRLHQLQLPGKRVCSAGDFI 299
>pdb|4J5I|A Chain A, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|B Chain B, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|C Chain C, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|D Chain D, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|E Chain E, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|F Chain F, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|G Chain G, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
pdb|4J5I|H Chain H, Crystal Structure Of An Alpha-ketoglutarate-dependent
Taurine Dioxygenase From Mycobacterium Smegmatis
Length = 304
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 177 YSPVTHTILEAHPEVYERMLRTGWGEKNNVKI-------IFGRWQDNLSQLES 222
Y V H ++ HPE ER+L G K+ V + +F +QD +++LE+
Sbjct: 179 YYEVEHPVVRVHPETGERVLLLGHFVKSFVGLKDTESAALFRLFQDRITRLEN 231
>pdb|1S89|A Chain A, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
pdb|1S89|B Chain B, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
pdb|1S89|C Chain C, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
pdb|1S89|D Chain D, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
pdb|1S89|E Chain E, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
pdb|1S89|F Chain F, H98n Mutant Of Methylglyoxal Synthase From E. Coli
Complexed With Phosphoglycolic Acid
Length = 152
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 19 KVKALIGSGA-DVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFA 77
+V ALI G DV F D L + + VK LL WN ++N++ DF
Sbjct: 73 QVGALISEGKIDVLIFFWDPLNAVPNDPD------VKALLRLATVWNIPVATNVATADFI 126
Query: 78 MDSGH 82
+ S H
Sbjct: 127 IQSPH 131
>pdb|3D5H|A Chain A, Crystal Structure Of Haementhin From Haemanthus
Multiflorus At 2.0a Resolution: Formation Of A Novel
Loop On A Tim Barrel Fold And Its Functional
Significance
pdb|3HU7|A Chain A, Structural Characterization And Binding Studies Of A Plant
Pathogenesis Related Protein Heamanthin From Haemanthus
Multiflorus Reveal Its Dual Inhibitory Effects Against
Xylanase And Alpha-Amylase
pdb|3M7S|A Chain A, Crystal Structure Of The Complex Of Xylanase Gh-11 And
Alpha Amylase Inhibitor Protein With Cellobiose At 2.4 A
Resolution
pdb|3OIH|A Chain A, Crystal Structure Of The Complex Of Xylanase-Alpha-Amylase
Inhibitor Protein (Xaip-I) With Trehalose At 1.87 A
Resolution
Length = 272
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 64 NALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILGTIARAGNKNSNSNGDYLEDRVS 123
N LSS L+ +FA+ + Q V+ + LGT+ + ++ Y + S
Sbjct: 137 NILSSFRLAGTEFALTAAPQCVYP---------DPNLGTVINSATFDAIWVQFYNNPQCS 187
Query: 124 FSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSG 156
+S G +++A+M AW + M+A K + G
Sbjct: 188 YSSG-----NAEALMNAWREWSMKARTKKVFLG 215
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 34 DSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDF 76
DS+G T L AA+LG+ ++V LL+ GA + S L DF
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,848,786
Number of Sequences: 62578
Number of extensions: 485121
Number of successful extensions: 1550
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 343
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)