Query 020270
Match_columns 328
No_of_seqs 317 out of 2676
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:23:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1709 Guanidinoacetate methy 100.0 1.4E-60 3E-65 381.3 13.1 268 56-323 1-270 (271)
2 KOG4412 26S proteasome regulat 100.0 9.3E-33 2E-37 215.4 3.2 161 2-171 36-202 (226)
3 PHA02791 ankyrin-like protein; 100.0 1.3E-29 2.9E-34 222.2 10.4 188 2-203 28-221 (284)
4 KOG4412 26S proteasome regulat 100.0 9.1E-30 2E-34 198.7 4.1 188 4-202 3-198 (226)
5 KOG0509 Ankyrin repeat and DHH 99.9 1.2E-27 2.5E-32 219.6 5.6 188 5-202 45-238 (600)
6 PHA02791 ankyrin-like protein; 99.9 2E-26 4.3E-31 202.2 11.6 181 3-201 60-245 (284)
7 KOG0509 Ankyrin repeat and DHH 99.9 8.3E-27 1.8E-31 214.0 9.2 159 2-169 76-240 (600)
8 PHA02875 ankyrin repeat protei 99.9 2E-26 4.4E-31 215.2 9.4 190 3-203 34-229 (413)
9 PHA03100 ankyrin repeat protei 99.9 2.9E-26 6.3E-31 218.2 9.1 188 4-202 106-309 (480)
10 PHA02875 ankyrin repeat protei 99.9 4.5E-26 9.7E-31 212.8 9.8 189 4-203 2-195 (413)
11 PHA02878 ankyrin repeat protei 99.9 6.8E-26 1.5E-30 215.2 10.6 188 4-203 37-294 (477)
12 PHA02946 ankyin-like protein; 99.9 2.9E-25 6.3E-30 207.9 9.9 192 6-201 39-268 (446)
13 PHA02874 ankyrin repeat protei 99.9 3.1E-25 6.7E-30 208.4 9.9 197 3-203 34-282 (434)
14 PHA02798 ankyrin-like protein; 99.9 3.5E-25 7.6E-30 210.9 8.6 199 2-202 69-317 (489)
15 PHA03100 ankyrin repeat protei 99.9 5.1E-25 1.1E-29 209.6 9.1 189 4-203 68-277 (480)
16 PHA02874 ankyrin repeat protei 99.9 1.5E-24 3.2E-29 203.7 9.5 186 3-201 123-314 (434)
17 PHA03095 ankyrin-like protein; 99.9 2.2E-24 4.7E-29 204.8 10.5 199 3-203 46-284 (471)
18 PHA02716 CPXV016; CPX019; EVM0 99.9 4.6E-24 9.9E-29 206.9 11.0 188 3-201 176-428 (764)
19 PHA02989 ankyrin repeat protei 99.9 3.9E-24 8.5E-29 203.9 10.1 195 4-200 69-313 (494)
20 PHA02716 CPXV016; CPX019; EVM0 99.9 3.4E-24 7.4E-29 207.7 9.1 191 11-203 291-567 (764)
21 PHA02946 ankyin-like protein; 99.9 7.6E-24 1.7E-28 198.4 10.5 187 7-201 12-234 (446)
22 PHA02859 ankyrin repeat protei 99.9 1.1E-22 2.3E-27 172.0 12.7 142 3-153 50-204 (209)
23 PHA03095 ankyrin-like protein; 99.9 2.3E-23 5E-28 197.8 9.6 198 3-202 82-316 (471)
24 KOG0508 Ankyrin repeat protein 99.9 5E-24 1.1E-28 188.8 4.0 183 2-197 40-236 (615)
25 KOG0510 Ankyrin repeat protein 99.9 2.8E-23 6.1E-28 194.7 6.7 189 3-202 186-403 (929)
26 PHA02876 ankyrin repeat protei 99.9 6.3E-23 1.4E-27 203.0 9.6 190 3-203 272-470 (682)
27 PHA02876 ankyrin repeat protei 99.9 7.4E-23 1.6E-27 202.5 9.5 189 4-203 178-402 (682)
28 PHA02878 ankyrin repeat protei 99.9 3.1E-22 6.7E-27 190.2 12.6 137 4-151 168-310 (477)
29 PHA02859 ankyrin repeat protei 99.9 8.9E-23 1.9E-27 172.5 7.0 116 2-120 19-146 (209)
30 PHA02917 ankyrin-like protein; 99.9 1.6E-22 3.5E-27 196.7 9.3 190 2-201 30-301 (661)
31 PHA02989 ankyrin repeat protei 99.9 1.7E-22 3.7E-27 192.7 9.2 191 3-203 34-283 (494)
32 KOG0510 Ankyrin repeat protein 99.9 8.1E-23 1.8E-27 191.7 5.2 193 3-197 120-327 (929)
33 PLN03192 Voltage-dependent pot 99.9 3.5E-22 7.6E-27 200.7 9.9 158 4-170 525-684 (823)
34 PHA02798 ankyrin-like protein; 99.9 5E-22 1.1E-26 189.3 10.2 191 4-203 36-285 (489)
35 KOG0508 Ankyrin repeat protein 99.9 1.6E-22 3.4E-27 179.4 5.8 143 3-155 83-229 (615)
36 KOG0512 Fetal globin-inducing 99.9 5.8E-21 1.2E-25 148.5 10.8 141 5-153 64-210 (228)
37 PHA02795 ankyrin-like protein; 99.8 2.3E-21 5.1E-26 176.8 7.3 181 10-203 83-289 (437)
38 KOG0507 CASK-interacting adapt 99.8 3.8E-22 8.2E-27 185.9 2.1 196 3-202 48-247 (854)
39 PF12796 Ank_2: Ankyrin repeat 99.8 2.1E-20 4.6E-25 136.2 10.5 88 8-99 1-88 (89)
40 PHA02741 hypothetical protein; 99.8 1.6E-20 3.4E-25 153.6 10.0 121 2-122 19-155 (169)
41 PHA02730 ankyrin-like protein; 99.8 4.4E-20 9.6E-25 176.2 11.9 194 2-197 39-258 (672)
42 PHA02743 Viral ankyrin protein 99.8 4.9E-20 1.1E-24 150.1 9.1 122 2-123 18-152 (166)
43 PHA02795 ankyrin-like protein; 99.8 9.1E-20 2E-24 166.5 10.5 184 2-200 114-314 (437)
44 PHA02884 ankyrin repeat protei 99.8 2E-19 4.3E-24 158.1 11.8 112 4-115 33-153 (300)
45 KOG0514 Ankyrin repeat protein 99.8 3.5E-20 7.6E-25 159.7 5.7 143 2-153 266-419 (452)
46 KOG0502 Integral membrane anky 99.8 2.2E-20 4.7E-25 150.7 4.1 111 2-112 158-272 (296)
47 PHA02743 Viral ankyrin protein 99.8 2.9E-19 6.3E-24 145.6 10.6 97 3-99 56-157 (166)
48 PHA02917 ankyrin-like protein; 99.8 2.1E-19 4.7E-24 174.9 7.6 178 17-203 12-223 (661)
49 PHA02736 Viral ankyrin protein 99.8 5.3E-19 1.1E-23 142.5 8.2 119 3-121 16-148 (154)
50 KOG4177 Ankyrin [Cell wall/mem 99.8 4E-20 8.6E-25 183.2 1.0 200 2-203 372-600 (1143)
51 PLN03192 Voltage-dependent pot 99.8 2.5E-18 5.5E-23 172.9 12.5 141 2-153 556-701 (823)
52 PHA02730 ankyrin-like protein; 99.8 8.5E-19 1.8E-23 167.4 7.3 184 17-203 20-229 (672)
53 KOG0505 Myosin phosphatase, re 99.8 5.2E-19 1.1E-23 159.7 5.2 197 6-204 42-259 (527)
54 KOG0195 Integrin-linked kinase 99.8 1.7E-18 3.6E-23 145.3 7.3 99 3-101 33-131 (448)
55 PHA02736 Viral ankyrin protein 99.7 1.7E-18 3.6E-23 139.6 6.6 95 3-97 54-153 (154)
56 KOG0502 Integral membrane anky 99.7 1.7E-18 3.8E-23 139.8 6.1 167 3-213 95-261 (296)
57 TIGR00870 trp transient-recept 99.7 4E-18 8.6E-23 170.3 9.9 188 3-201 16-282 (743)
58 PHA02741 hypothetical protein; 99.7 1.3E-17 2.8E-22 136.4 10.5 94 3-96 59-158 (169)
59 KOG4177 Ankyrin [Cell wall/mem 99.7 1.3E-18 2.8E-23 172.6 4.5 188 3-201 439-631 (1143)
60 KOG0512 Fetal globin-inducing 99.7 3.1E-17 6.8E-22 127.8 8.3 98 3-100 96-195 (228)
61 KOG4214 Myotrophin and similar 99.7 4.5E-17 9.8E-22 113.6 7.9 93 5-98 3-95 (117)
62 PHA02792 ankyrin-like protein; 99.7 3.5E-17 7.6E-22 154.9 8.4 187 2-201 173-478 (631)
63 PHA02884 ankyrin repeat protei 99.7 1.1E-16 2.4E-21 140.8 10.7 91 3-93 69-160 (300)
64 KOG0514 Ankyrin repeat protein 99.7 8.9E-17 1.9E-21 138.8 8.6 89 3-91 339-428 (452)
65 cd00204 ANK ankyrin repeats; 99.7 3.6E-16 7.9E-21 120.3 11.1 117 2-118 5-125 (126)
66 KOG0505 Myosin phosphatase, re 99.7 7.1E-17 1.5E-21 146.0 6.2 121 3-123 72-255 (527)
67 KOG0507 CASK-interacting adapt 99.7 7.3E-17 1.6E-21 151.0 5.8 190 5-203 4-216 (854)
68 KOG0195 Integrin-linked kinase 99.7 2.4E-17 5.3E-22 138.3 1.9 112 9-120 5-121 (448)
69 PF13857 Ank_5: Ankyrin repeat 99.6 1.7E-16 3.7E-21 104.5 4.9 55 23-77 1-56 (56)
70 TIGR00870 trp transient-recept 99.6 6.3E-16 1.4E-20 154.6 7.9 119 3-121 127-279 (743)
71 PTZ00322 6-phosphofructo-2-kin 99.6 2.8E-15 6.1E-20 147.0 11.8 95 5-99 83-184 (664)
72 PF12796 Ank_2: Ankyrin repeat 99.6 2.5E-15 5.3E-20 109.3 7.7 64 4-67 26-89 (89)
73 KOG4369 RTK signaling protein 99.6 2.1E-16 4.5E-21 152.6 2.4 189 4-201 757-951 (2131)
74 PF13637 Ank_4: Ankyrin repeat 99.6 2.3E-15 4.9E-20 98.5 6.1 53 5-57 2-54 (54)
75 PF13637 Ank_4: Ankyrin repeat 99.6 3.8E-15 8.2E-20 97.5 6.7 54 37-90 1-54 (54)
76 KOG3676 Ca2+-permeable cation 99.6 3.2E-15 6.9E-20 141.6 7.2 119 3-121 183-330 (782)
77 PHA02792 ankyrin-like protein; 99.6 1.6E-14 3.4E-19 137.1 10.8 105 4-108 339-452 (631)
78 KOG1710 MYND Zn-finger and ank 99.6 1.5E-14 3.2E-19 121.6 9.3 120 2-121 10-134 (396)
79 COG0666 Arp FOG: Ankyrin repea 99.5 2.6E-14 5.7E-19 121.5 10.3 119 4-122 73-203 (235)
80 KOG0515 p53-interacting protei 99.5 1.5E-14 3.3E-19 130.3 8.3 90 7-96 553-642 (752)
81 KOG4214 Myotrophin and similar 99.5 3.6E-14 7.9E-19 99.2 6.4 75 3-77 33-107 (117)
82 KOG1710 MYND Zn-finger and ank 99.5 1.6E-13 3.4E-18 115.5 8.5 90 2-91 43-133 (396)
83 KOG4369 RTK signaling protein 99.5 6.9E-15 1.5E-19 142.3 -0.2 198 2-200 788-1018(2131)
84 COG0666 Arp FOG: Ankyrin repea 99.4 6.2E-13 1.4E-17 113.0 9.2 92 2-93 104-203 (235)
85 KOG0515 p53-interacting protei 99.4 3.1E-13 6.7E-18 122.1 6.6 90 2-91 581-673 (752)
86 cd00204 ANK ankyrin repeats; 99.4 2.3E-12 5E-17 98.9 10.3 88 3-90 39-126 (126)
87 PF13857 Ank_5: Ankyrin repeat 99.3 2.4E-12 5.3E-17 84.6 4.1 43 2-44 14-56 (56)
88 PTZ00322 6-phosphofructo-2-kin 99.2 1.2E-11 2.6E-16 121.6 7.2 108 39-148 84-195 (664)
89 KOG3676 Ca2+-permeable cation 99.2 2.9E-11 6.2E-16 115.2 9.2 90 4-93 240-331 (782)
90 KOG0818 GTPase-activating prot 99.2 4.7E-11 1E-15 107.3 9.4 90 4-93 133-223 (669)
91 KOG0506 Glutaminase (contains 99.2 2.6E-11 5.7E-16 108.5 5.5 91 4-94 506-597 (622)
92 PF13606 Ank_3: Ankyrin repeat 99.1 1.7E-10 3.6E-15 65.1 4.0 30 36-65 1-30 (30)
93 KOG0705 GTPase-activating prot 99.1 4E-10 8.7E-15 103.2 8.4 92 6-97 626-721 (749)
94 PF00023 Ank: Ankyrin repeat H 99.0 6.3E-10 1.4E-14 64.5 4.3 32 36-67 1-32 (33)
95 KOG0783 Uncharacterized conser 98.9 5.5E-10 1.2E-14 106.3 4.2 76 4-79 52-128 (1267)
96 PF05430 Methyltransf_30: S-ad 98.9 6.5E-10 1.4E-14 84.9 2.2 75 203-291 30-110 (124)
97 PF13606 Ank_3: Ankyrin repeat 98.9 1.7E-09 3.7E-14 60.9 3.4 30 3-32 1-30 (30)
98 COG2521 Predicted archaeal met 98.9 6.6E-09 1.4E-13 85.8 8.1 144 140-286 115-271 (287)
99 KOG0782 Predicted diacylglycer 98.9 4.5E-09 9.7E-14 96.3 6.9 118 7-124 869-992 (1004)
100 KOG0522 Ankyrin repeat protein 98.9 7.2E-09 1.6E-13 94.5 7.9 86 7-92 23-110 (560)
101 PF00023 Ank: Ankyrin repeat H 98.8 4.7E-09 1E-13 60.8 3.8 33 3-35 1-33 (33)
102 PRK01747 mnmC bifunctional tRN 98.8 1.4E-08 3.1E-13 100.4 7.4 118 157-289 58-224 (662)
103 KOG0782 Predicted diacylglycer 98.8 1.7E-08 3.6E-13 92.6 6.7 89 4-92 899-989 (1004)
104 KOG0783 Uncharacterized conser 98.7 5.1E-09 1.1E-13 99.9 2.8 90 19-108 32-128 (1267)
105 KOG0521 Putative GTPase activa 98.7 1.9E-08 4.1E-13 99.1 4.6 90 2-91 654-743 (785)
106 KOG2384 Major histocompatibili 98.6 9.3E-08 2E-12 76.3 6.3 67 27-93 2-69 (223)
107 PTZ00098 phosphoethanolamine N 98.5 1.7E-06 3.8E-11 75.7 12.6 136 154-291 50-202 (263)
108 PF08241 Methyltransf_11: Meth 98.5 4.3E-07 9.4E-12 66.0 7.4 95 161-257 1-95 (95)
109 KOG0511 Ankyrin repeat protein 98.5 4.3E-07 9.3E-12 79.8 7.4 74 5-79 37-110 (516)
110 PLN02233 ubiquinone biosynthes 98.4 1E-05 2.2E-10 70.8 13.9 104 155-258 72-181 (261)
111 KOG0705 GTPase-activating prot 98.4 5.4E-07 1.2E-11 83.1 5.7 61 3-63 660-720 (749)
112 PF12847 Methyltransf_18: Meth 98.4 2E-06 4.3E-11 64.9 7.9 101 157-257 2-109 (112)
113 KOG0511 Ankyrin repeat protein 98.4 7.4E-07 1.6E-11 78.4 6.1 60 38-97 37-96 (516)
114 TIGR00452 methyltransferase, p 98.4 6.7E-06 1.4E-10 73.4 12.1 139 155-294 120-276 (314)
115 PLN02490 MPBQ/MSBQ methyltrans 98.3 6.7E-06 1.4E-10 74.1 11.8 134 156-291 113-256 (340)
116 PRK15068 tRNA mo(5)U34 methylt 98.3 1.7E-05 3.7E-10 71.5 14.3 138 156-294 122-277 (322)
117 TIGR02752 MenG_heptapren 2-hep 98.3 1.9E-05 4E-10 67.9 13.5 106 155-260 44-152 (231)
118 PLN02244 tocopherol O-methyltr 98.3 6.3E-06 1.4E-10 74.9 11.0 103 156-258 118-222 (340)
119 TIGR00138 gidB 16S rRNA methyl 98.3 2.1E-05 4.5E-10 64.8 12.9 124 156-294 42-167 (181)
120 KOG0818 GTPase-activating prot 98.3 1.3E-06 2.8E-11 79.3 5.9 92 31-122 121-223 (669)
121 PRK01581 speE spermidine synth 98.3 2.2E-05 4.8E-10 70.7 13.8 136 155-296 149-301 (374)
122 KOG0522 Ankyrin repeat protein 98.3 1.6E-06 3.4E-11 79.6 5.9 57 3-59 54-110 (560)
123 KOG0506 Glutaminase (contains 98.2 5.5E-07 1.2E-11 81.3 2.4 88 35-122 504-596 (622)
124 PLN02336 phosphoethanolamine N 98.2 1.3E-05 2.8E-10 76.4 11.8 134 155-288 265-410 (475)
125 COG4121 Uncharacterized conser 98.2 9.5E-06 2.1E-10 69.2 8.6 72 205-290 147-227 (252)
126 KOG0521 Putative GTPase activa 98.2 1.6E-06 3.4E-11 85.8 4.5 100 15-114 632-737 (785)
127 TIGR00537 hemK_rel_arch HemK-r 98.2 2.5E-05 5.5E-10 64.3 11.1 122 156-288 19-161 (179)
128 KOG0520 Uncharacterized conser 98.2 1.2E-06 2.7E-11 86.3 3.6 118 3-121 573-702 (975)
129 PLN02396 hexaprenyldihydroxybe 98.1 2.6E-05 5.6E-10 70.0 10.7 102 156-258 131-234 (322)
130 PRK11036 putative S-adenosyl-L 98.1 3.8E-05 8.1E-10 67.0 10.8 102 155-257 43-147 (255)
131 COG4122 Predicted O-methyltran 98.1 3.3E-05 7.2E-10 64.8 9.9 105 155-264 58-171 (219)
132 PRK04266 fibrillarin; Provisio 98.1 0.0001 2.2E-09 62.9 13.1 133 155-291 71-210 (226)
133 PRK03612 spermidine synthase; 98.1 0.00011 2.3E-09 70.7 14.5 136 155-296 296-448 (521)
134 PRK00811 spermidine synthase; 98.0 0.00013 2.8E-09 64.6 13.6 142 155-303 75-230 (283)
135 KOG3609 Receptor-activated Ca2 98.0 1.5E-05 3.3E-10 77.2 7.3 96 3-98 24-159 (822)
136 COG2226 UbiE Methylase involve 98.0 0.00017 3.8E-09 61.5 12.4 110 156-265 51-162 (238)
137 PRK11873 arsM arsenite S-adeno 98.0 0.00012 2.6E-09 64.5 12.0 106 154-259 75-183 (272)
138 PRK08317 hypothetical protein; 98.0 0.0003 6.5E-09 60.3 14.3 104 155-258 18-123 (241)
139 PRK00377 cbiT cobalt-precorrin 98.0 0.00019 4.2E-09 60.0 12.6 130 155-295 39-173 (198)
140 smart00828 PKS_MT Methyltransf 98.0 0.00013 2.7E-09 62.4 11.7 134 158-292 1-145 (224)
141 PRK00216 ubiE ubiquinone/menaq 98.0 0.0003 6.5E-09 60.4 14.1 103 156-258 51-157 (239)
142 PRK00107 gidB 16S rRNA methylt 97.9 0.00016 3.5E-09 59.8 11.6 125 156-294 45-172 (187)
143 PRK04457 spermidine synthase; 97.9 7.1E-05 1.5E-09 65.4 10.0 104 155-258 65-176 (262)
144 TIGR01934 MenG_MenH_UbiE ubiqu 97.9 0.00034 7.3E-09 59.4 13.8 102 156-258 39-142 (223)
145 PRK10258 biotin biosynthesis p 97.9 0.00022 4.8E-09 62.0 12.6 98 157-259 43-140 (251)
146 PF13489 Methyltransf_23: Meth 97.9 8.7E-05 1.9E-09 59.6 9.2 124 155-288 21-159 (161)
147 PRK14103 trans-aconitate 2-met 97.9 0.0001 2.2E-09 64.3 10.2 97 155-258 28-125 (255)
148 PRK00121 trmB tRNA (guanine-N( 97.9 0.00015 3.4E-09 60.8 10.6 124 156-288 40-177 (202)
149 PF13847 Methyltransf_31: Meth 97.9 0.00014 3.1E-09 58.0 9.6 105 156-261 3-112 (152)
150 KOG3609 Receptor-activated Ca2 97.9 2.3E-05 4.9E-10 76.1 5.7 88 36-123 24-155 (822)
151 PF01209 Ubie_methyltran: ubiE 97.8 9.3E-05 2E-09 63.5 8.5 111 154-264 45-158 (233)
152 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00011 2.4E-09 63.4 8.8 105 155-264 78-195 (247)
153 PLN02781 Probable caffeoyl-CoA 97.8 0.00012 2.6E-09 62.9 8.8 106 155-263 67-182 (234)
154 PLN02476 O-methyltransferase 97.8 0.00016 3.4E-09 63.3 9.3 106 155-265 117-234 (278)
155 COG2227 UbiG 2-polyprenyl-3-me 97.8 0.0001 2.2E-09 62.1 7.6 102 156-258 59-160 (243)
156 TIGR00417 speE spermidine synt 97.8 0.0008 1.7E-08 59.2 13.7 134 155-294 71-217 (270)
157 COG2519 GCD14 tRNA(1-methylade 97.8 0.00027 5.9E-09 60.0 10.1 118 150-286 88-214 (256)
158 PF08242 Methyltransf_12: Meth 97.7 2.3E-05 4.9E-10 57.7 3.1 92 161-255 1-99 (99)
159 COG2242 CobL Precorrin-6B meth 97.7 0.00099 2.1E-08 54.2 12.5 130 154-296 32-163 (187)
160 TIGR00740 methyltransferase, p 97.7 0.0017 3.6E-08 56.1 14.7 108 155-264 52-166 (239)
161 PRK08287 cobalt-precorrin-6Y C 97.7 0.00048 1E-08 57.0 10.9 127 155-294 30-159 (187)
162 PRK15451 tRNA cmo(5)U34 methyl 97.7 0.0009 1.9E-08 58.1 12.7 107 154-262 54-167 (247)
163 KOG2505 Ankyrin repeat protein 97.7 8.1E-05 1.8E-09 68.0 6.1 62 17-78 404-471 (591)
164 PF02353 CMAS: Mycolic acid cy 97.7 0.00027 5.9E-09 62.0 9.3 102 153-257 59-164 (273)
165 KOG2384 Major histocompatibili 97.7 0.00012 2.6E-09 58.9 6.2 66 4-69 12-78 (223)
166 PRK14967 putative methyltransf 97.7 0.00057 1.2E-08 58.4 10.9 127 155-290 35-182 (223)
167 PF01596 Methyltransf_3: O-met 97.7 9.2E-05 2E-09 62.1 5.8 105 155-264 44-160 (205)
168 PF13649 Methyltransf_25: Meth 97.6 8.3E-05 1.8E-09 55.0 4.6 94 160-253 1-101 (101)
169 PLN03075 nicotianamine synthas 97.6 0.0005 1.1E-08 60.5 10.1 126 156-288 123-256 (296)
170 PLN02366 spermidine synthase 97.6 0.0022 4.7E-08 57.3 14.1 135 155-295 90-239 (308)
171 PF13659 Methyltransf_26: Meth 97.6 0.00021 4.6E-09 54.1 6.5 102 158-259 2-115 (117)
172 PF01564 Spermine_synth: Sperm 97.6 0.0022 4.8E-08 55.5 13.4 142 155-303 75-230 (246)
173 COG0421 SpeE Spermidine syntha 97.6 0.0018 3.9E-08 56.9 12.8 129 158-294 78-221 (282)
174 COG0220 Predicted S-adenosylme 97.6 0.00021 4.6E-09 60.7 6.7 101 158-259 50-164 (227)
175 PF05175 MTS: Methyltransferas 97.6 0.00038 8.2E-09 56.8 8.0 102 156-258 31-139 (170)
176 PRK01683 trans-aconitate 2-met 97.5 0.001 2.2E-08 58.1 10.8 99 155-258 30-129 (258)
177 cd02440 AdoMet_MTases S-adenos 97.5 0.0013 2.8E-08 47.7 9.9 100 159-258 1-103 (107)
178 PRK00517 prmA ribosomal protei 97.5 0.0011 2.4E-08 57.6 10.9 118 153-289 116-235 (250)
179 PRK06922 hypothetical protein; 97.5 0.0012 2.6E-08 63.9 11.8 108 156-263 418-541 (677)
180 TIGR00477 tehB tellurite resis 97.5 0.0014 3E-08 54.7 10.9 102 156-259 30-133 (195)
181 PF08003 Methyltransf_9: Prote 97.5 0.0015 3.2E-08 57.3 10.8 158 138-301 95-276 (315)
182 PLN02336 phosphoethanolamine N 97.5 0.00082 1.8E-08 64.2 10.3 153 156-321 37-201 (475)
183 KOG4300 Predicted methyltransf 97.5 0.001 2.2E-08 54.6 9.0 110 156-265 76-189 (252)
184 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00059 1.3E-08 56.9 8.1 124 156-288 16-154 (194)
185 PRK05134 bifunctional 3-demeth 97.4 0.0025 5.4E-08 54.7 12.0 103 155-258 47-150 (233)
186 TIGR01983 UbiG ubiquinone bios 97.4 0.002 4.4E-08 54.8 11.4 101 157-258 46-148 (224)
187 TIGR02072 BioC biotin biosynth 97.4 0.00086 1.9E-08 57.5 9.1 100 157-259 35-135 (240)
188 smart00248 ANK ankyrin repeats 97.4 0.00026 5.7E-09 38.2 4.0 27 37-63 2-28 (30)
189 PRK14968 putative methyltransf 97.4 0.0025 5.5E-08 52.5 11.5 124 155-289 22-170 (188)
190 TIGR02021 BchM-ChlM magnesium 97.4 0.0032 7E-08 53.5 12.2 131 156-291 55-205 (219)
191 PRK14121 tRNA (guanine-N(7)-)- 97.4 0.00058 1.3E-08 62.5 7.9 124 157-289 123-258 (390)
192 PRK12335 tellurite resistance 97.4 0.0016 3.5E-08 57.8 10.6 104 157-262 121-226 (287)
193 PRK13944 protein-L-isoaspartat 97.4 0.0018 3.9E-08 54.5 10.2 110 143-258 57-172 (205)
194 KOG0520 Uncharacterized conser 97.4 9.3E-05 2E-09 73.4 2.4 85 7-92 611-702 (975)
195 PRK05785 hypothetical protein; 97.4 0.0021 4.6E-08 54.9 10.4 111 156-273 51-162 (226)
196 PTZ00146 fibrillarin; Provisio 97.4 0.0069 1.5E-07 53.3 13.6 128 155-286 131-265 (293)
197 PLN02823 spermine synthase 97.3 0.0064 1.4E-07 55.0 13.5 103 156-260 103-221 (336)
198 TIGR02081 metW methionine bios 97.3 0.009 2E-07 49.7 13.6 138 155-299 12-174 (194)
199 PRK14966 unknown domain/N5-glu 97.3 0.0034 7.3E-08 58.0 11.8 166 111-286 207-399 (423)
200 COG2230 Cfa Cyclopropane fatty 97.3 0.0019 4.2E-08 56.3 9.6 113 147-264 63-181 (283)
201 PRK11705 cyclopropane fatty ac 97.3 0.0025 5.5E-08 58.9 11.0 99 155-258 166-266 (383)
202 PRK11207 tellurite resistance 97.3 0.002 4.3E-08 53.9 9.4 101 156-258 30-133 (197)
203 KOG1270 Methyltransferases [Co 97.3 0.00058 1.3E-08 58.1 6.0 97 157-257 90-193 (282)
204 TIGR00080 pimt protein-L-isoas 97.3 0.0025 5.4E-08 54.1 9.7 98 155-258 76-176 (215)
205 TIGR02469 CbiT precorrin-6Y C5 97.3 0.0023 4.9E-08 48.7 8.7 99 156-257 19-120 (124)
206 TIGR02716 C20_methyl_CrtF C-20 97.3 0.0058 1.3E-07 54.8 12.5 103 155-260 148-255 (306)
207 PHA03411 putative methyltransf 97.2 0.0088 1.9E-07 52.1 12.8 159 140-307 47-228 (279)
208 PRK13942 protein-L-isoaspartat 97.2 0.0019 4.1E-08 54.6 8.4 99 155-259 75-176 (212)
209 KOG1540 Ubiquinone biosynthesi 97.2 0.0036 7.9E-08 53.2 9.5 102 156-258 100-213 (296)
210 smart00248 ANK ankyrin repeats 97.2 0.0006 1.3E-08 36.7 3.5 29 3-31 1-29 (30)
211 KOG1663 O-methyltransferase [S 97.1 0.0022 4.7E-08 53.7 7.8 107 155-264 72-188 (237)
212 TIGR00406 prmA ribosomal prote 97.1 0.0041 8.9E-08 55.2 9.4 110 143-257 146-257 (288)
213 COG4976 Predicted methyltransf 97.0 0.002 4.3E-08 53.8 6.5 150 142-296 109-270 (287)
214 PF01135 PCMT: Protein-L-isoas 96.9 0.0097 2.1E-07 50.1 9.6 113 143-261 57-174 (209)
215 PRK00536 speE spermidine synth 96.9 0.051 1.1E-06 47.3 14.2 125 155-295 71-203 (262)
216 PRK15128 23S rRNA m(5)C1962 me 96.9 0.032 7E-07 51.8 13.8 134 156-292 220-369 (396)
217 PRK07402 precorrin-6B methylas 96.8 0.0092 2E-07 49.8 9.2 101 155-259 39-142 (196)
218 PRK00312 pcm protein-L-isoaspa 96.8 0.0076 1.7E-07 50.9 8.7 99 155-260 77-176 (212)
219 PRK11088 rrmA 23S rRNA methylt 96.8 0.015 3.2E-07 51.2 10.7 93 156-259 85-181 (272)
220 PF08704 GCD14: tRNA methyltra 96.8 0.016 3.4E-07 50.0 10.4 118 153-286 37-165 (247)
221 TIGR03534 RF_mod_PrmC protein- 96.8 0.018 3.9E-07 49.9 10.9 121 156-286 87-235 (251)
222 PF07021 MetW: Methionine bios 96.8 0.011 2.4E-07 48.5 8.7 101 153-260 10-112 (193)
223 COG2518 Pcm Protein-L-isoaspar 96.8 0.0092 2E-07 49.6 8.4 108 143-260 57-170 (209)
224 COG4123 Predicted O-methyltran 96.7 0.012 2.5E-07 50.5 9.1 125 155-290 43-192 (248)
225 PRK10901 16S rRNA methyltransf 96.7 0.015 3.3E-07 54.7 10.6 106 154-259 242-372 (427)
226 PRK09328 N5-glutamine S-adenos 96.7 0.019 4.1E-07 50.5 10.6 122 155-286 107-256 (275)
227 COG4106 Tam Trans-aconitate me 96.7 0.0067 1.4E-07 50.3 6.8 99 155-258 29-128 (257)
228 KOG2505 Ankyrin repeat protein 96.7 0.0012 2.5E-08 60.7 2.7 42 4-45 430-471 (591)
229 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.014 3E-07 58.5 10.4 127 156-291 538-679 (702)
230 PRK07580 Mg-protoporphyrin IX 96.6 0.034 7.4E-07 47.4 11.5 98 156-257 63-164 (230)
231 PF02390 Methyltransf_4: Putat 96.6 0.0019 4E-08 53.9 3.3 123 158-289 19-157 (195)
232 PLN02232 ubiquinone biosynthes 96.6 0.011 2.4E-07 47.6 7.6 74 185-258 3-80 (160)
233 TIGR01177 conserved hypothetic 96.6 0.032 6.8E-07 50.6 11.3 128 155-297 181-321 (329)
234 KOG1541 Predicted protein carb 96.5 0.039 8.4E-07 46.1 10.4 96 157-257 51-158 (270)
235 PRK11188 rrmJ 23S rRNA methylt 96.5 0.026 5.6E-07 47.6 9.9 99 154-262 49-168 (209)
236 TIGR03704 PrmC_rel_meth putati 96.5 0.021 4.7E-07 49.6 9.6 123 158-291 88-239 (251)
237 TIGR00446 nop2p NOL1/NOP2/sun 96.5 0.023 5.1E-07 49.7 9.8 127 154-286 69-222 (264)
238 TIGR03533 L3_gln_methyl protei 96.5 0.045 9.8E-07 48.5 11.5 121 156-287 121-269 (284)
239 COG2264 PrmA Ribosomal protein 96.5 0.043 9.3E-07 48.5 11.1 137 142-289 148-285 (300)
240 PRK06202 hypothetical protein; 96.4 0.041 8.8E-07 47.2 10.8 93 156-250 60-159 (232)
241 TIGR03438 probable methyltrans 96.4 0.047 1E-06 48.8 11.4 103 156-258 63-176 (301)
242 TIGR03587 Pse_Me-ase pseudamin 96.4 0.054 1.2E-06 45.5 10.9 91 155-250 42-135 (204)
243 KOG3010 Methyltransferase [Gen 96.4 0.012 2.5E-07 49.8 6.5 104 155-260 32-138 (261)
244 PRK13943 protein-L-isoaspartat 96.3 0.06 1.3E-06 48.5 11.5 108 143-259 65-180 (322)
245 TIGR00563 rsmB ribosomal RNA s 96.3 0.03 6.4E-07 52.7 9.9 128 154-289 236-394 (426)
246 PRK09489 rsmC 16S ribosomal RN 96.2 0.03 6.6E-07 50.9 9.1 100 157-258 197-302 (342)
247 COG4262 Predicted spermidine s 96.2 0.1 2.2E-06 46.9 11.9 141 155-304 288-445 (508)
248 PRK14902 16S rRNA methyltransf 96.2 0.072 1.6E-06 50.4 12.0 126 155-286 249-402 (444)
249 PRK11805 N5-glutamine S-adenos 96.2 0.063 1.4E-06 48.1 10.9 118 158-286 135-280 (307)
250 PLN02585 magnesium protoporphy 96.2 0.12 2.6E-06 46.4 12.6 134 156-294 144-301 (315)
251 PF06325 PrmA: Ribosomal prote 96.1 0.019 4.2E-07 50.8 7.2 141 143-306 148-290 (295)
252 COG2890 HemK Methylase of poly 96.0 0.13 2.9E-06 45.4 11.8 116 159-285 113-255 (280)
253 PRK14901 16S rRNA methyltransf 96.0 0.048 1E-06 51.4 9.6 123 155-286 251-407 (434)
254 PRK14903 16S rRNA methyltransf 96.0 0.052 1.1E-06 51.1 9.6 127 154-286 235-389 (431)
255 PF05401 NodS: Nodulation prot 95.9 0.056 1.2E-06 44.5 8.3 101 157-260 44-147 (201)
256 TIGR03840 TMPT_Se_Te thiopurin 95.9 0.13 2.8E-06 43.5 10.8 101 156-257 34-150 (213)
257 PF00891 Methyltransf_2: O-met 95.8 0.039 8.4E-07 47.6 7.4 100 155-262 99-202 (241)
258 PRK15001 SAM-dependent 23S rib 95.8 0.099 2.1E-06 48.1 10.3 101 157-258 229-339 (378)
259 TIGR00536 hemK_fam HemK family 95.5 0.085 1.8E-06 46.8 8.7 102 158-260 116-245 (284)
260 PF03848 TehB: Tellurite resis 95.5 0.096 2.1E-06 43.3 8.3 118 143-262 16-136 (192)
261 TIGR00438 rrmJ cell division p 95.5 0.094 2E-06 43.3 8.4 94 155-258 31-145 (188)
262 PRK14904 16S rRNA methyltransf 95.4 0.13 2.9E-06 48.6 10.3 126 155-287 249-401 (445)
263 smart00138 MeTrc Methyltransfe 95.3 0.13 2.8E-06 45.1 9.0 104 156-259 99-242 (264)
264 PRK01544 bifunctional N5-gluta 95.2 0.14 3.1E-06 49.2 9.6 119 158-286 140-287 (506)
265 PRK01544 bifunctional N5-gluta 95.2 0.069 1.5E-06 51.3 7.5 123 156-287 347-483 (506)
266 PF06080 DUF938: Protein of un 94.9 0.24 5.2E-06 41.2 9.0 120 143-262 12-144 (204)
267 PRK13255 thiopurine S-methyltr 94.9 0.36 7.7E-06 41.0 10.3 98 156-254 37-150 (218)
268 COG3963 Phospholipid N-methylt 94.7 0.086 1.9E-06 42.1 5.6 98 155-258 47-155 (194)
269 PF05185 PRMT5: PRMT5 arginine 94.7 0.25 5.5E-06 46.6 9.6 116 138-256 163-294 (448)
270 smart00650 rADc Ribosomal RNA 94.6 0.43 9.4E-06 38.6 9.8 97 156-257 13-111 (169)
271 KOG3191 Predicted N6-DNA-methy 94.5 0.49 1.1E-05 38.5 9.5 124 156-288 43-189 (209)
272 COG2520 Predicted methyltransf 94.5 0.87 1.9E-05 41.2 12.3 143 155-303 187-331 (341)
273 PF05891 Methyltransf_PK: AdoM 94.5 0.48 1E-05 39.8 9.9 138 157-294 56-203 (218)
274 PF05219 DREV: DREV methyltran 94.5 0.92 2E-05 39.2 11.7 132 157-299 95-247 (265)
275 COG1092 Predicted SAM-dependen 94.3 0.82 1.8E-05 42.2 11.9 134 157-293 218-367 (393)
276 PF06128 Shigella_OspC: Shigel 94.3 0.32 7E-06 40.7 8.2 91 5-96 180-280 (284)
277 KOG2361 Predicted methyltransf 93.8 0.49 1.1E-05 40.2 8.5 99 159-258 74-182 (264)
278 KOG3045 Predicted RNA methylas 93.6 0.18 3.8E-06 43.3 5.6 131 139-294 162-293 (325)
279 PF01861 DUF43: Protein of unk 93.4 1.8 3.9E-05 37.0 11.3 143 142-288 28-174 (243)
280 PF07942 N2227: N2227-like pro 93.3 0.58 1.3E-05 40.9 8.5 89 203-294 143-244 (270)
281 PF10294 Methyltransf_16: Puta 93.2 0.91 2E-05 36.9 9.3 99 154-254 43-151 (173)
282 PRK10909 rsmD 16S rRNA m(2)G96 93.2 0.69 1.5E-05 38.6 8.6 102 156-259 53-159 (199)
283 PF13578 Methyltransf_24: Meth 92.8 0.085 1.8E-06 39.0 2.3 74 181-257 25-103 (106)
284 KOG1661 Protein-L-isoaspartate 92.7 0.59 1.3E-05 38.9 7.2 101 154-260 80-194 (237)
285 PF01234 NNMT_PNMT_TEMT: NNMT/ 92.1 0.35 7.5E-06 42.0 5.5 70 222-291 158-238 (256)
286 TIGR00308 TRM1 tRNA(guanine-26 92.0 1 2.2E-05 41.6 8.8 97 158-258 46-146 (374)
287 PF05724 TPMT: Thiopurine S-me 91.3 6.9 0.00015 33.1 12.6 136 155-292 36-190 (218)
288 PHA03412 putative methyltransf 91.2 2.8 6.1E-05 35.9 9.9 162 139-307 31-216 (241)
289 PRK13168 rumA 23S rRNA m(5)U19 91.2 2.9 6.3E-05 39.6 11.3 97 155-256 296-397 (443)
290 COG0357 GidB Predicted S-adeno 91.1 2 4.4E-05 36.2 9.0 125 157-291 68-194 (215)
291 TIGR00479 rumA 23S rRNA (uraci 90.8 3.4 7.3E-05 39.0 11.3 97 155-255 291-392 (431)
292 PRK11933 yebU rRNA (cytosine-C 90.7 4.4 9.6E-05 38.6 11.9 121 155-284 112-262 (470)
293 PF05148 Methyltransf_8: Hypot 90.6 0.45 9.7E-06 39.7 4.5 128 142-292 57-185 (219)
294 PLN02672 methionine S-methyltr 90.5 1.4 3.1E-05 46.0 9.0 121 158-286 120-297 (1082)
295 TIGR00095 RNA methyltransferas 90.2 1.9 4E-05 35.7 8.0 101 156-257 49-157 (189)
296 COG2813 RsmC 16S RNA G1207 met 90.2 1.6 3.5E-05 38.6 7.9 100 157-258 159-265 (300)
297 PF03291 Pox_MCEL: mRNA cappin 90.2 0.91 2E-05 41.1 6.6 100 156-256 62-183 (331)
298 PF03602 Cons_hypoth95: Conser 89.7 0.6 1.3E-05 38.4 4.6 104 156-260 42-154 (183)
299 COG2263 Predicted RNA methylas 89.6 10 0.00023 31.2 13.5 140 135-290 18-166 (198)
300 PF06128 Shigella_OspC: Shigel 89.3 0.77 1.7E-05 38.5 4.9 48 15-62 228-279 (284)
301 COG0144 Sun tRNA and rRNA cyto 88.8 11 0.00023 34.7 12.5 139 146-293 146-318 (355)
302 PRK13256 thiopurine S-methyltr 88.5 6.9 0.00015 33.4 10.3 101 156-259 43-163 (226)
303 KOG1500 Protein arginine N-met 88.1 2.8 6.2E-05 37.5 7.8 98 156-255 177-278 (517)
304 PRK04338 N(2),N(2)-dimethylgua 88.0 2.9 6.4E-05 38.7 8.4 98 157-258 58-157 (382)
305 COG0742 N6-adenine-specific me 87.9 4.3 9.3E-05 33.4 8.3 102 156-257 43-152 (187)
306 PF11929 DUF3447: Domain of un 87.9 1.5 3.2E-05 30.3 4.9 48 5-59 7-54 (76)
307 TIGR00755 ksgA dimethyladenosi 86.8 9.3 0.0002 33.1 10.5 86 155-247 28-116 (253)
308 TIGR02085 meth_trns_rumB 23S r 86.6 6.6 0.00014 36.3 9.9 97 156-256 233-331 (374)
309 PF03141 Methyltransf_29: Puta 86.3 0.57 1.2E-05 44.1 2.7 98 156-257 117-217 (506)
310 PF03059 NAS: Nicotianamine sy 85.8 1.7 3.7E-05 38.2 5.2 125 158-288 122-253 (276)
311 PF02475 Met_10: Met-10+ like- 85.7 3.4 7.4E-05 34.5 6.8 98 155-257 100-200 (200)
312 PRK13699 putative methylase; P 85.5 2.2 4.8E-05 36.4 5.8 40 238-286 51-90 (227)
313 KOG1269 SAM-dependent methyltr 85.3 2 4.4E-05 39.4 5.7 99 158-258 112-214 (364)
314 KOG2798 Putative trehalase [Ca 85.0 3.4 7.3E-05 36.7 6.6 85 206-294 240-338 (369)
315 TIGR00478 tly hemolysin TlyA f 84.8 6.1 0.00013 33.7 8.1 90 156-256 75-168 (228)
316 KOG2198 tRNA cytosine-5-methyl 82.7 2.4 5.2E-05 38.5 4.9 50 240-294 277-326 (375)
317 PF11929 DUF3447: Domain of un 82.0 2.5 5.5E-05 29.1 3.9 47 39-92 8-54 (76)
318 PRK05031 tRNA (uracil-5-)-meth 82.0 14 0.00031 33.9 10.0 87 158-247 208-311 (362)
319 PRK14896 ksgA 16S ribosomal RN 81.7 7.9 0.00017 33.7 7.8 71 155-229 28-98 (258)
320 KOG2915 tRNA(1-methyladenosine 81.6 33 0.00071 30.1 11.1 116 153-286 102-229 (314)
321 PRK00274 ksgA 16S ribosomal RN 81.0 5.1 0.00011 35.2 6.4 59 155-216 41-99 (272)
322 TIGR03439 methyl_EasF probable 79.4 48 0.001 29.9 12.8 117 156-272 76-210 (319)
323 KOG1271 Methyltransferases [Ge 79.2 6.3 0.00014 32.3 5.7 101 156-258 67-180 (227)
324 TIGR02143 trmA_only tRNA (urac 79.0 27 0.00059 32.0 10.7 87 158-247 199-302 (353)
325 KOG1499 Protein arginine N-met 78.4 5.6 0.00012 35.9 5.7 99 156-256 60-164 (346)
326 PF01269 Fibrillarin: Fibrilla 78.4 16 0.00035 30.9 8.1 128 155-287 72-207 (229)
327 PF02527 GidB: rRNA small subu 78.3 6 0.00013 32.5 5.6 117 159-286 51-169 (184)
328 PF10672 Methyltrans_SAM: S-ad 77.1 25 0.00053 31.2 9.4 110 155-265 122-244 (286)
329 PF14090 HTH_39: Helix-turn-he 76.9 2 4.4E-05 29.1 2.1 48 244-296 5-53 (70)
330 PF00398 RrnaAD: Ribosomal RNA 74.8 12 0.00026 32.6 6.9 59 155-215 29-87 (262)
331 PRK03522 rumB 23S rRNA methylu 74.5 25 0.00054 31.6 9.1 75 156-231 173-249 (315)
332 KOG3178 Hydroxyindole-O-methyl 74.2 34 0.00075 31.0 9.5 123 155-286 176-308 (342)
333 PRK11524 putative methyltransf 73.6 6.1 0.00013 35.0 4.8 23 238-260 59-81 (284)
334 KOG2940 Predicted methyltransf 71.9 13 0.00028 31.7 5.9 103 157-264 73-178 (325)
335 PF06859 Bin3: Bicoid-interact 70.8 2.3 5E-05 31.5 1.2 21 237-257 22-42 (110)
336 KOG2352 Predicted spermine/spe 70.1 33 0.00072 32.5 8.8 134 159-294 51-201 (482)
337 COG4798 Predicted methyltransf 68.9 12 0.00025 31.1 4.9 52 240-291 147-204 (238)
338 COG1041 Predicted DNA modifica 67.8 75 0.0016 28.9 10.3 120 156-289 197-327 (347)
339 PRK04148 hypothetical protein; 64.1 43 0.00093 26.0 7.0 70 157-233 17-88 (134)
340 COG0030 KsgA Dimethyladenosine 62.0 31 0.00067 30.0 6.6 58 154-213 28-85 (259)
341 PRK00050 16S rRNA m(4)C1402 me 61.8 34 0.00074 30.5 7.0 76 155-231 18-99 (296)
342 COG1889 NOP1 Fibrillarin-like 61.7 97 0.0021 26.0 11.2 127 155-286 75-208 (231)
343 KOG2899 Predicted methyltransf 60.8 8 0.00017 33.2 2.7 37 221-257 165-207 (288)
344 PF10354 DUF2431: Domain of un 60.7 87 0.0019 25.2 9.0 88 190-287 44-147 (166)
345 PF03158 DUF249: Multigene fam 57.6 20 0.00043 29.3 4.3 21 4-24 76-96 (192)
346 PF01189 Nol1_Nop2_Fmu: NOL1/N 56.6 90 0.0019 27.6 8.8 129 149-283 78-238 (283)
347 KOG2904 Predicted methyltransf 54.0 1.6E+02 0.0034 26.1 10.1 41 157-197 149-190 (328)
348 KOG2824 Glutaredoxin-related p 53.2 12 0.00026 32.5 2.5 62 253-319 132-193 (281)
349 COG0275 Predicted S-adenosylme 53.2 14 0.00031 32.8 3.1 31 234-264 219-249 (314)
350 PTZ00338 dimethyladenosine tra 53.2 47 0.001 29.6 6.4 72 155-229 35-108 (294)
351 cd03061 GST_N_CLIC GST_N famil 52.9 32 0.00069 24.7 4.4 48 267-323 19-67 (91)
352 COG4627 Uncharacterized protei 52.9 2.7 5.9E-05 33.3 -1.2 38 221-258 46-85 (185)
353 KOG3836 HLH transcription fact 51.3 3.6 7.8E-05 39.6 -0.9 53 44-96 403-455 (605)
354 KOG1122 tRNA and rRNA cytosine 50.4 2.2E+02 0.0048 26.8 10.4 131 155-294 240-402 (460)
355 KOG1595 CCCH-type Zn-finger pr 49.3 2.8 6.1E-05 39.6 -1.9 89 3-93 57-155 (528)
356 KOG3201 Uncharacterized conser 48.7 61 0.0013 26.2 5.6 137 157-305 30-174 (201)
357 TIGR02194 GlrX_NrdH Glutaredox 48.6 24 0.00051 23.7 3.1 24 271-294 10-33 (72)
358 TIGR00150 HI0065_YjeE ATPase, 48.1 53 0.0011 25.4 5.2 74 236-319 6-79 (133)
359 cd03027 GRX_DEP Glutaredoxin ( 47.7 42 0.00092 22.4 4.3 24 271-294 12-35 (73)
360 COG0500 SmtA SAM-dependent met 46.0 1.2E+02 0.0027 22.5 9.2 100 160-261 52-157 (257)
361 COG1867 TRM1 N2,N2-dimethylgua 43.7 1.8E+02 0.004 26.8 8.6 112 143-258 38-153 (380)
362 TIGR02183 GRXA Glutaredoxin, G 43.7 20 0.00043 25.2 2.1 48 271-321 11-61 (86)
363 PF01728 FtsJ: FtsJ-like methy 43.0 44 0.00096 27.0 4.4 98 157-264 24-144 (181)
364 PRK10646 ADP-binding protein; 41.2 59 0.0013 25.9 4.6 75 235-319 11-85 (153)
365 TIGR00006 S-adenosyl-methyltra 41.1 25 0.00053 31.5 2.8 26 236-261 217-244 (305)
366 PF05711 TylF: Macrocin-O-meth 39.4 42 0.00091 29.1 3.8 80 203-291 156-237 (248)
367 COG1064 AdhP Zn-dependent alco 39.4 86 0.0019 28.6 5.9 99 151-261 161-261 (339)
368 PRK10742 putative methyltransf 39.3 77 0.0017 27.5 5.3 72 159-231 91-173 (250)
369 PF02005 TRM: N2,N2-dimethylgu 38.3 1.2E+02 0.0026 28.1 6.9 99 156-258 49-153 (377)
370 PF03158 DUF249: Multigene fam 37.5 1.6E+02 0.0034 24.3 6.5 96 8-111 50-155 (192)
371 PF03141 Methyltransf_29: Puta 36.7 59 0.0013 31.1 4.6 95 157-257 366-465 (506)
372 COG1189 Predicted rRNA methyla 36.7 2.2E+02 0.0049 24.5 7.6 95 155-257 78-176 (245)
373 PF01555 N6_N4_Mtase: DNA meth 36.4 53 0.0011 27.3 4.1 46 236-288 33-79 (231)
374 COG1743 Adenine-specific DNA m 36.0 67 0.0014 32.5 5.0 46 238-288 567-612 (875)
375 KOG0822 Protein kinase inhibit 35.9 1.2E+02 0.0026 29.4 6.4 93 158-256 369-475 (649)
376 KOG4591 Uncharacterized conser 35.6 30 0.00065 28.7 2.2 45 36-80 221-270 (280)
377 PRK09004 FMN-binding protein M 35.2 1.7E+02 0.0036 22.9 6.4 88 221-312 45-144 (146)
378 TIGR01444 fkbM_fam methyltrans 35.2 59 0.0013 24.9 3.9 39 160-198 2-41 (143)
379 cd03051 GST_N_GTT2_like GST_N 34.5 76 0.0017 20.7 3.9 47 271-323 10-57 (74)
380 cd03045 GST_N_Delta_Epsilon GS 34.3 45 0.00098 22.0 2.7 47 271-322 10-56 (74)
381 PRK10611 chemotaxis methyltran 34.3 41 0.00088 29.9 3.0 37 221-257 222-260 (287)
382 PF00462 Glutaredoxin: Glutare 34.2 55 0.0012 20.8 3.0 24 271-294 10-33 (60)
383 PF02367 UPF0079: Uncharacteri 34.0 69 0.0015 24.4 3.9 70 240-319 3-72 (123)
384 PF04445 SAM_MT: Putative SAM- 33.8 63 0.0014 27.7 4.0 71 158-231 77-160 (234)
385 PF11899 DUF3419: Protein of u 33.2 1.4E+02 0.003 27.7 6.4 70 189-264 264-339 (380)
386 PF14740 DUF4471: Domain of un 33.2 1.6E+02 0.0034 26.2 6.5 61 221-286 221-283 (289)
387 cd03031 GRX_GRX_like Glutaredo 33.2 90 0.002 24.6 4.5 37 254-294 2-38 (147)
388 KOG1207 Diacetyl reductase/L-x 32.8 2.3E+02 0.0049 23.3 6.7 78 245-323 123-210 (245)
389 COG2265 TrmA SAM-dependent met 31.3 4.6E+02 0.01 24.8 10.5 93 156-251 293-389 (432)
390 cd03056 GST_N_4 GST_N family, 31.0 76 0.0016 20.7 3.4 47 271-323 10-57 (73)
391 KOG0820 Ribosomal RNA adenine 30.7 1.8E+02 0.004 25.7 6.2 73 155-230 57-131 (315)
392 PF01795 Methyltransf_5: MraW 30.5 28 0.00061 31.2 1.4 66 236-309 218-284 (310)
393 PF12645 HTH_16: Helix-turn-he 30.3 54 0.0012 21.8 2.4 20 7-26 2-21 (65)
394 PF13417 GST_N_3: Glutathione 30.2 56 0.0012 21.9 2.6 44 270-322 7-51 (75)
395 PF09445 Methyltransf_15: RNA 29.5 1.4E+02 0.003 24.0 5.1 72 159-231 2-78 (163)
396 PF05768 DUF836: Glutaredoxin- 29.5 80 0.0017 21.7 3.3 44 272-325 12-57 (81)
397 KOG1709 Guanidinoacetate methy 28.9 54 0.0012 27.8 2.7 40 23-62 1-40 (271)
398 PF01739 CheR: CheR methyltran 28.9 76 0.0016 26.4 3.6 52 206-257 120-173 (196)
399 COG0604 Qor NADPH:quinone redu 28.9 3E+02 0.0065 24.8 7.8 113 142-263 128-245 (326)
400 PRK10329 glutaredoxin-like pro 28.8 68 0.0015 22.2 2.9 22 271-294 12-33 (81)
401 PF10831 DUF2556: Protein of u 28.6 18 0.0004 22.1 -0.1 9 307-315 2-10 (53)
402 cd00570 GST_N_family Glutathio 28.4 1.1E+02 0.0023 19.2 3.8 45 271-323 10-55 (71)
403 COG0802 Predicted ATPase or ki 28.3 1.7E+02 0.0036 23.2 5.2 75 235-319 8-82 (149)
404 PF12138 Spherulin4: Spherulat 27.9 76 0.0016 27.6 3.6 29 222-251 106-134 (253)
405 cd03037 GST_N_GRX2 GST_N famil 27.8 70 0.0015 21.0 2.8 23 271-293 10-32 (71)
406 KOG3836 HLH transcription fact 27.7 13 0.00029 35.9 -1.2 60 11-70 403-462 (605)
407 cd03060 GST_N_Omega_like GST_N 27.7 75 0.0016 20.9 2.9 44 271-323 10-54 (71)
408 PRK00050 16S rRNA m(4)C1402 me 27.2 60 0.0013 28.9 2.9 26 235-260 212-237 (296)
409 KOG1695 Glutathione S-transfer 27.2 65 0.0014 27.0 2.9 44 272-323 14-57 (206)
410 cd03029 GRX_hybridPRX5 Glutare 26.7 72 0.0016 21.1 2.7 22 271-294 12-33 (72)
411 TIGR02825 B4_12hDH leukotriene 26.4 4E+02 0.0087 23.5 8.3 102 152-261 134-239 (325)
412 PF11968 DUF3321: Putative met 25.7 1.9E+02 0.0042 24.5 5.4 66 221-290 103-180 (219)
413 TIGR02190 GlrX-dom Glutaredoxi 25.6 74 0.0016 21.7 2.6 22 271-294 19-40 (79)
414 cd03418 GRX_GRXb_1_3_like Glut 25.0 87 0.0019 20.7 2.9 22 271-294 11-32 (75)
415 KOG3420 Predicted RNA methylas 24.9 1.1E+02 0.0024 24.3 3.5 91 157-249 49-143 (185)
416 COG1352 CheR Methylase of chem 24.6 43 0.00092 29.4 1.5 35 221-257 201-239 (268)
417 cd03038 GST_N_etherase_LigE GS 24.3 93 0.002 21.3 3.0 27 268-294 14-40 (84)
418 cd03030 GRX_SH3BGR Glutaredoxi 24.1 98 0.0021 22.2 3.0 38 254-295 2-39 (92)
419 PF08123 DOT1: Histone methyla 24.1 4.3E+02 0.0092 22.1 8.0 146 155-311 41-201 (205)
420 cd02072 Glm_B12_BD B12 binding 23.3 85 0.0018 24.1 2.7 33 262-294 5-37 (128)
421 PF07091 FmrO: Ribosomal RNA m 23.1 1.8E+02 0.004 25.2 4.9 132 155-289 104-241 (251)
422 KOG1975 mRNA cap methyltransfe 23.1 5.8E+02 0.013 23.3 12.7 101 155-256 116-234 (389)
423 PF12305 DUF3630: Protein of u 23.0 69 0.0015 23.1 2.0 36 267-314 20-55 (94)
424 cd03048 GST_N_Ure2p_like GST_N 22.9 1.3E+02 0.0029 20.2 3.5 46 271-322 10-56 (81)
425 cd03053 GST_N_Phi GST_N family 22.5 1.4E+02 0.003 19.7 3.5 24 271-294 11-34 (76)
426 PF07725 LRR_3: Leucine Rich R 22.3 58 0.0013 16.1 1.1 17 291-307 4-20 (20)
427 PF10613 Lig_chan-Glu_bd: Liga 22.0 48 0.001 22.1 1.0 43 266-308 15-61 (65)
428 PF10131 PTPS_related: 6-pyruv 21.8 1.3E+02 0.0029 29.9 4.4 63 220-294 485-548 (616)
429 cd03040 GST_N_mPGES2 GST_N fam 21.6 1.1E+02 0.0024 20.3 2.9 24 271-294 11-34 (77)
430 PRK11200 grxA glutaredoxin 1; 21.5 80 0.0017 21.8 2.2 46 271-321 12-62 (85)
431 COG0293 FtsJ 23S rRNA methylas 21.3 5E+02 0.011 21.8 8.1 104 152-265 41-165 (205)
432 cd03052 GST_N_GDAP1 GST_N fami 21.1 1.4E+02 0.0029 20.0 3.2 23 272-294 11-33 (73)
433 cd08294 leukotriene_B4_DH_like 20.7 5.4E+02 0.012 22.5 8.0 97 154-259 141-241 (329)
434 COG0695 GrxC Glutaredoxin and 20.6 1.2E+02 0.0027 20.8 2.9 24 271-294 12-35 (80)
435 TIGR02180 GRX_euk Glutaredoxin 20.3 87 0.0019 21.1 2.1 24 271-294 10-35 (84)
436 TIGR02200 GlrX_actino Glutared 20.2 1E+02 0.0023 20.2 2.5 45 271-323 11-57 (77)
437 KOG1596 Fibrillarin and relate 20.1 5.9E+02 0.013 22.2 8.3 100 155-258 155-260 (317)
No 1
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-60 Score=381.32 Aligned_cols=268 Identities=48% Similarity=0.893 Sum_probs=254.8
Q ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhhHHHhhccCCCCCcchhhhhcccccCCccccccch
Q 020270 56 LLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILGTIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSK 135 (328)
Q Consensus 56 Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~ 135 (328)
|++.||.||..|..+.||..+|...|+.+.++.|++.|+..+.....+..-+..+......++...+++..+.+++.+++
T Consensus 1 lle~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~Selll~~l~rn~s~n~~~~a~~~qd~ls~~~D~ll~~~~k 80 (271)
T KOG1709|consen 1 LLEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVPSELLLFALGRNESPNADGNAPYLQDYLSTAEDTLLDSLGK 80 (271)
T ss_pred CcccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCchhhhhhccccccCccccccchHHHHHHhhhhhHHHhhccc
Confidence 57899999999999999999999999999999999999999987776666566666677888888888887889999999
Q ss_pred hhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccch
Q 020270 136 AIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQD 215 (328)
Q Consensus 136 ~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~ 215 (328)
++||.||||+|.|++++++..+.+||++|||+|+.++.++...|..|.++|+||++++.|+..||..+.++.+..|+|++
T Consensus 81 ~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 81 GVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred hhhhhhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC--CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEee
Q 020270 216 NLSQL--ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLP 293 (328)
Q Consensus 216 ~~~~~--~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~ 293 (328)
.++.+ ..||+||||||+|+|+++++|+++++++|||+|+||||||+|+++..||+||+.++.+.+...|+.++++..+
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~vy~~lV~iev~~~g~~~~l~~~~ 240 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDVYKILVMIEVATYGVPCTLEPGP 240 (271)
T ss_pred hhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhhhheeEEEEeecCCCceeeeccc
Confidence 99887 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccccccCcccccceee
Q 020270 294 VKNCLGEEVWEGVKHKYWQLDTYYLPVCQF 323 (328)
Q Consensus 294 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 323 (328)
+.++.++++|+|++||||+++.|++|+|+|
T Consensus 241 v~~~l~de~w~~vk~~Y~~~~~yy~P~vtf 270 (271)
T KOG1709|consen 241 VDEQLGDELWNGVKRRYWNLPQYYLPRVTF 270 (271)
T ss_pred cccccchhhhcchhhhhhcCCceecceeec
Confidence 988889999999999999999999999997
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-33 Score=215.39 Aligned_cols=161 Identities=23% Similarity=0.208 Sum_probs=135.8
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIG-SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNALSSSNLSAGDFAMD 79 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~-~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~ 79 (328)
++++|||||||..|+.++|++|++ .+..+|.+|+.||||||.||..|+.++|+.|+.+ |+++|+.++.|+||||+|+.
T Consensus 36 qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAag 115 (226)
T KOG4412|consen 36 QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAG 115 (226)
T ss_pred ccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhc
Confidence 378999999999999999999995 6778899999999999999999999999999998 99999999999999999999
Q ss_pred cCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhc
Q 020270 80 SGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICS 155 (328)
Q Consensus 80 ~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~ 155 (328)
.|..+++++|+++|+.+++.+. |||+|+.-|..++++||..... ..|..+..|.||||.|...++..
T Consensus 116 K~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a---------~~n~qDk~G~TpL~~al~e~~~d 186 (226)
T KOG4412|consen 116 KGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGA---------PLNTQDKYGFTPLHHALAEGHPD 186 (226)
T ss_pred CChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCC---------CCCcccccCccHHHHHHhccCch
Confidence 9999999999999999988877 8899988888888888887442 33444555568888886666555
Q ss_pred CCCceeeecccCCcch
Q 020270 156 GGGHILNIGFGMGLVD 171 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~ 171 (328)
....+++.|.++.+.+
T Consensus 187 ~a~lLV~~gAd~~~ed 202 (226)
T KOG4412|consen 187 VAVLLVRAGADTDRED 202 (226)
T ss_pred HHHHHHHhccceeecc
Confidence 5555666666655444
No 3
>PHA02791 ankyrin-like protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=222.17 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=159.2
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.+|.||||+|+..|+.+++++|+++|++++.++ |.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|
T Consensus 28 ~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 28 VHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 358999999999999999999999999998765 689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCChhhhhh-----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcC
Q 020270 82 HQEVFEVLLNAGIQAELILG-----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSG 156 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~-----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~ 156 (328)
+.+++++|+++|++++..+. |++.|+..++.+++++|++.... ..+. ..+.||||.|+..+..+.
T Consensus 106 ~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~----~~d~------~~g~TpLh~Aa~~g~~ei 175 (284)
T PHA02791 106 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS----TFDL------AILLSCIHITIKNGHVDM 175 (284)
T ss_pred CHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc----cccc------ccCccHHHHHHHcCCHHH
Confidence 99999999999999876543 99999999999999999985421 1111 124699999999888777
Q ss_pred CCceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcCCCCC
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
...+++.|.+....+. .+.+| +++++..++.+++++|++.|++..
T Consensus 176 v~lLL~~gAd~n~~d~--~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in 221 (284)
T PHA02791 176 MILLLDYMTSTNTNNS--LLFIPDIKLAIDNKDLEMLQALFKYDINIY 221 (284)
T ss_pred HHHHHHCCCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence 7778888877665442 45666 455555599999999999998753
No 4
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-30 Score=198.71 Aligned_cols=188 Identities=23% Similarity=0.257 Sum_probs=159.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCC-CCcccCC-CCCcHHHHHHHhCcHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGA-DVSYFDS-DGLTPLMHAAKLGHANLVKTLLE-AGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~ga-d~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
..++.+.+|......-|+.++++.. .+|.+++ +|+|||||||..|+.++|.+|++ .+..+|..|..||||||+|++.
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~ 82 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN 82 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence 4678899999999999999999876 6788887 89999999999999999999994 5899999999999999999999
Q ss_pred CCHHHHHHHHHc-CCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhc
Q 020270 81 GHQEVFEVLLNA-GIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICS 155 (328)
Q Consensus 81 g~~~~v~~Ll~~-g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~ 155 (328)
|+.++|+.|+.+ |+++|..++ +||.|+..+..+++++|+.++. ..+..+..+.||||.|+..+...
T Consensus 83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga---------~i~~kD~~~qtplHRAAavGklk 153 (226)
T KOG4412|consen 83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA---------LIRIKDKQGQTPLHRAAAVGKLK 153 (226)
T ss_pred CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCC---------CCcccccccCchhHHHHhccchh
Confidence 999999999998 999999887 9999999999999999998763 23344555679999998777644
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
....++..|...+..|. .+.+|++|+.+++++++...|.++|++.
T Consensus 154 vie~Li~~~a~~n~qDk--~G~TpL~~al~e~~~d~a~lLV~~gAd~ 198 (226)
T KOG4412|consen 154 VIEYLISQGAPLNTQDK--YGFTPLHHALAEGHPDVAVLLVRAGADT 198 (226)
T ss_pred hHHHHHhcCCCCCcccc--cCccHHHHHHhccCchHHHHHHHhccce
Confidence 44444555544444443 6788999888999999999999999763
No 5
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=1.2e-27 Score=219.63 Aligned_cols=188 Identities=23% Similarity=0.269 Sum_probs=149.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCC
Q 020270 5 GEQLCEAARNGDIDKVKALIGS-GADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS-SSNLSAGDFAMDSGH 82 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~~~g~ 82 (328)
...++.|++.|+++.|+.|++. |.+++..|.+|.|+|||||.+++++++|+|+++||++|+.+ .-+.||||+|++.|+
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~ 124 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH 124 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence 4567888899999999999987 88888888889999999999999999999999999999887 558899999999999
Q ss_pred HHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCC
Q 020270 83 QEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGG 158 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~ 158 (328)
..+|++|+++||++++.+. ++|.|++.++.-.+-|++.+. .+.+..+.+|+||||+|+.++......
T Consensus 125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~---------~d~d~~D~~grTpLmwAaykg~~~~v~ 195 (600)
T KOG0509|consen 125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG---------ADIDLRDNNGRTPLMWAAYKGFALFVR 195 (600)
T ss_pred HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc---------ccCCCcCCCCCCHHHHHHHhcccHHHH
Confidence 9999999999999888877 889999988888888888765 244455566679999988887765566
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
.+|..|......+ ...+.+|+|.+++.++..++..+++.|.+.
T Consensus 196 ~LL~f~a~~~~~d-~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~ 238 (600)
T KOG0509|consen 196 RLLKFGASLLLTD-DNHGNTPLHWAVVGGNLTAVKLLLEGGADL 238 (600)
T ss_pred HHHHhcccccccc-cccCCchHHHHHhcCCcceEehhhhcCCcc
Confidence 7788877766644 125566666666668888888666665543
No 6
>PHA02791 ankyrin-like protein; Provisional
Probab=99.94 E-value=2e-26 Score=202.17 Aligned_cols=181 Identities=17% Similarity=0.059 Sum_probs=150.7
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCC-CHHHHHHHcC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNL-SAGDFAMDSG 81 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~-tpL~~A~~~g 81 (328)
++.||||.|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++|..+..|+ ||||+|+..|
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence 467999999999999999999999999999999999999999999999999999999999999998885 8999999999
Q ss_pred CHHHHHHHHHcCCChh-hh--hhHHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccch-HHHHHHHHhhcCC
Q 020270 82 HQEVFEVLLNAGIQAE-LI--LGTIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKP-LMEAHAKAICSGG 157 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~-~~--~~~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tp-L~~a~~~~~~~~~ 157 (328)
+.+++++|++++.+.. .. ..|||.|+..++.+++++|++.+.. .+..+..+.|| ||.|+..+..+..
T Consensus 140 ~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd---------~n~~d~~g~t~~L~~Aa~~~~~e~v 210 (284)
T PHA02791 140 DVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS---------TNTNNSLLFIPDIKLAIDNKDLEML 210 (284)
T ss_pred CHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCC---------CCcccCCCCChHHHHHHHcCCHHHH
Confidence 9999999999876542 11 2399999999999999999986531 22223334455 9999888887777
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG 201 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~ 201 (328)
+.+++.|.+....+ .+..+ .++.+++++|+++.++
T Consensus 211 ~lLl~~Ga~in~~~---~~~~~------l~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 211 QALFKYDINIYSVN---LENVL------LDDAEIAKMIIEKHVE 245 (284)
T ss_pred HHHHHCCCCCccCc---ccCcc------CCCHHHHHHHHHhhhh
Confidence 77777777765544 23322 3889999999997755
No 7
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.94 E-value=8.3e-27 Score=214.04 Aligned_cols=159 Identities=25% Similarity=0.185 Sum_probs=135.4
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFD-SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
++|.|+||+||.+++++++++||++|||+|..+ ..+.|||||||++|++.+|++|+++||+++.+|.+|.||+|+|++.
T Consensus 76 ~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~ 155 (600)
T KOG0509|consen 76 REGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF 155 (600)
T ss_pred cCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence 368899999999999999999999999999998 6789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhh-hhccchHHHHHHHHhhc
Q 020270 81 GHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIM-MAWEKPLMEAHAKAICS 155 (328)
Q Consensus 81 g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~-~~~~tpL~~a~~~~~~~ 155 (328)
||.-.|.+|+.+|++++..|. ||++|+.+++...+..|+.-+. ..+..+ ..|.||||+|+..++..
T Consensus 156 ~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a---------~~~~~d~~~g~TpLHwa~~~gN~~ 226 (600)
T KOG0509|consen 156 GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA---------SLLLTDDNHGNTPLHWAVVGGNLT 226 (600)
T ss_pred CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc---------cccccccccCCchHHHHHhcCCcc
Confidence 999999999999999999888 9999999998776666665332 112222 44569999998888876
Q ss_pred CCCceeeecccCCc
Q 020270 156 GGGHILNIGFGMGL 169 (328)
Q Consensus 156 ~~~~iLe~g~~~g~ 169 (328)
...-+++-|.....
T Consensus 227 ~v~Ll~~g~~~~d~ 240 (600)
T KOG0509|consen 227 AVKLLLEGGADLDK 240 (600)
T ss_pred eEehhhhcCCcccc
Confidence 66644444454433
No 8
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.93 E-value=2e-26 Score=215.18 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=125.1
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNA-LSSSNLSAGDFAMDSG 81 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~-~d~~g~tpL~~A~~~g 81 (328)
.|.||||.|+..|+.++|++|+++|++++..+..+.||||.|+..|+.++|++|++.|+..+. .+..|.||||+|+..|
T Consensus 34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~ 113 (413)
T PHA02875 34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK 113 (413)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC
Confidence 355666666666666666666666666665555566666666666666666666666554432 3456777777777777
Q ss_pred CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCC
Q 020270 82 HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGG 157 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~ 157 (328)
+.+++++|+++|++++..+. |||.|+..++.+.+++|++.+. +.+..+..|.||||.|+..+..+..
T Consensus 114 ~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~---------~~~~~d~~g~TpL~~A~~~g~~eiv 184 (413)
T PHA02875 114 KLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA---------CLDIEDCCGCTPLIIAMAKGDIAIC 184 (413)
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC---------CCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 77777777777777766554 7777777777777777776442 2233445567999998877766666
Q ss_pred CceeeecccCCcchhHHhccCCceE-EeeccCHHHHHHHHHcCCCCC
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTH-TILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~-~a~e~~~~~~~~L~~~g~~~~ 203 (328)
+.+++.|.+....+. .+.++++| ++..++++++++|++.|++..
T Consensus 185 ~~Ll~~ga~~n~~~~--~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 185 KMLLDSGANIDYFGK--NGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred HHHHhCCCCCCcCCC--CCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 667777776554332 34455666 444489999999999887754
No 9
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.93 E-value=2.9e-26 Score=218.21 Aligned_cols=188 Identities=21% Similarity=0.188 Sum_probs=118.1
Q ss_pred hhHHHHHHH--HcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q 020270 4 EGEQLCEAA--RNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG--HANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79 (328)
Q Consensus 4 ~~t~L~~Aa--~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 79 (328)
|.||||+|+ ..|+.+++++|+++|++++..+..|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|+.
T Consensus 106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 106 GITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred CCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 456666666 666666666666666666666666666666666666 5666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHcCCChhhh----------hhHHHhhccCCC--CCcchhhhhcccccCCccccccchhhhhhccchHHH
Q 020270 80 SGHQEVFEVLLNAGIQAELI----------LGTIARAGNKNS--NSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLME 147 (328)
Q Consensus 80 ~g~~~~v~~Ll~~g~~~~~~----------~~~l~~a~~~~~--~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~ 147 (328)
.|+.+++++|+++|++++.. ..|++.|+..++ .+.+++|++.+. +.+..+..|.||||.
T Consensus 186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~---------din~~d~~g~TpL~~ 256 (480)
T PHA03100 186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV---------PINIKDVYGFTPLHY 256 (480)
T ss_pred hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC---------CCCCCCCCCCCHHHH
Confidence 66666666666666655543 225556665555 555555555321 233344566799998
Q ss_pred HHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 148 AHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 148 a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
|+..+..+..+.+++.|.+....+. .+.+|++.++..++.++++.|++.|++.
T Consensus 257 A~~~~~~~iv~~Ll~~gad~n~~d~--~g~tpl~~A~~~~~~~iv~~Ll~~g~~i 309 (480)
T PHA03100 257 AVYNNNPEFVKYLLDLGANPNLVNK--YGDTPLHIAILNNNKEIFKLLLNNGPSI 309 (480)
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence 8877776666677777776665442 5566666665668889999999888654
No 10
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.93 E-value=4.5e-26 Score=212.85 Aligned_cols=189 Identities=20% Similarity=0.201 Sum_probs=162.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQ 83 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~ 83 (328)
.+++||.|+..|+.+++++|+++|+++|.++..|.||||+|+..|+.++|++|+++|++++..+..+.||||.|+..|+.
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHcCCChhhh---hh--HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCC
Q 020270 84 EVFEVLLNAGIQAELI---LG--TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGG 158 (328)
Q Consensus 84 ~~v~~Ll~~g~~~~~~---~~--~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~ 158 (328)
++++.|++.|+..+.. .+ |||.|+..++.+.+++|++.+. +.+..+..+.||||.|+..+..+..+
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga---------d~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA---------DPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC---------CCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999876432 12 9999999999999999998653 23334445679999998888777677
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
.+++.|......+. .+.+|+++++..++.++++.|++.|++..
T Consensus 153 ~Ll~~g~~~~~~d~--~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n 195 (413)
T PHA02875 153 LLIDHKACLDIEDC--CGCTPLIIAMAKGDIAICKMLLDSGANID 195 (413)
T ss_pred HHHhcCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence 77777776655443 56677777777799999999999998754
No 11
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.93 E-value=6.8e-26 Score=215.23 Aligned_cols=188 Identities=20% Similarity=0.158 Sum_probs=153.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcH---------------------------------
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHA--------------------------------- 50 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~--------------------------------- 50 (328)
+.||||.||..|+.++|+.||++|+++|.+|..|.||||+||..|+.
T Consensus 37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei 116 (477)
T PHA02878 37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI 116 (477)
T ss_pred CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence 56899999999999999999999999999999999999999976542
Q ss_pred -------------------------------HHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCChhh
Q 020270 51 -------------------------------NLVKTLLEAGAPWNALSSS-NLSAGDFAMDSGHQEVFEVLLNAGIQAEL 98 (328)
Q Consensus 51 -------------------------------~~v~~Ll~~ga~~n~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 98 (328)
+++++|+++|+++|..+.. |.||||+|+..|+.+++++|+++|++++.
T Consensus 117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~ 196 (477)
T PHA02878 117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196 (477)
T ss_pred HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence 3788889999999999998 99999999999999999999999999987
Q ss_pred hhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHH-HhhcCCCceeeecccCCcchhH
Q 020270 99 ILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAK-AICSGGGHILNIGFGMGLVDTA 173 (328)
Q Consensus 99 ~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~-~~~~~~~~iLe~g~~~g~~~~~ 173 (328)
.+. |||.|+..++.+++++|+..+. +.+..+..|.||||.|+.. ...+....+++.|.+....+.
T Consensus 197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga---------~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~- 266 (477)
T PHA02878 197 PDKTNNSPLHHAVKHYNKPIVHILLENGA---------STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY- 266 (477)
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHHcCC---------CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC-
Confidence 765 9999999999999999998553 3344455677999999765 233334456666665544321
Q ss_pred HhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 174 IQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 174 ~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
..+.+|++.+ .++++++++|++.|++..
T Consensus 267 ~~g~TpLh~A--~~~~~~v~~Ll~~gadin 294 (477)
T PHA02878 267 ILGLTALHSS--IKSERKLKLLLEYGADIN 294 (477)
T ss_pred CCCCCHHHHH--ccCHHHHHHHHHCCCCCC
Confidence 1345565544 578999999999998754
No 12
>PHA02946 ankyin-like protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=207.92 Aligned_cols=192 Identities=18% Similarity=0.100 Sum_probs=105.7
Q ss_pred HHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC-
Q 020270 6 EQLCEAAR--NGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH- 82 (328)
Q Consensus 6 t~L~~Aa~--~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~- 82 (328)
++||.++. ..+.++|+.||++|+++|.+|..|.||||+|+..|+.++|++|+++||++|.+|..|.||||+|+..++
T Consensus 39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~ 118 (446)
T PHA02946 39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDE 118 (446)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCc
Confidence 56665542 234566666666666666666666666666666666666666666666666666666666666655442
Q ss_pred -HHHHHHHHHcCCChhhh-hh----HHHhhccCCCCCcchhhhhcccccCC------------------------cc--c
Q 020270 83 -QEVFEVLLNAGIQAELI-LG----TIARAGNKNSNSNGDYLEDRVSFSEG------------------------KL--V 130 (328)
Q Consensus 83 -~~~v~~Ll~~g~~~~~~-~~----~l~~a~~~~~~~~~~~L~~~~~~~~~------------------------~l--~ 130 (328)
.+++++|+++|++++.. +. |++ ++..++.+++++|++.+..... .+ .
T Consensus 119 ~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~ 197 (446)
T PHA02946 119 VIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKL 197 (446)
T ss_pred hHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHc
Confidence 56666666666666532 11 554 3334455555555543311000 00 0
Q ss_pred cccchhhhhhccchHHHHHHHHh--hcCCCceeeecccCCcchhHHhccCCceEEeeccCH-HHHHHHHHcCCC
Q 020270 131 DSDSKAIMMAWEKPLMEAHAKAI--CSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHP-EVYERMLRTGWG 201 (328)
Q Consensus 131 ~~~~~~~~~~~~tpL~~a~~~~~--~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~-~~~~~L~~~g~~ 201 (328)
..+.+..+..|.||||+|+..+. .+....+++ |.+....+ ..+.+|++.++..+++ ++++.|++.|..
T Consensus 198 Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d--~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 198 GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQN--KFGDSPLTLLIKTLSPAHLINKLLSTSNV 268 (446)
T ss_pred CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCC--CCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence 12344455667799998875531 111112222 44433333 2456666555555664 788888888754
No 13
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=208.36 Aligned_cols=197 Identities=20% Similarity=0.238 Sum_probs=120.5
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGA--------------------- 61 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga--------------------- 61 (328)
++.||||.|++.|+.++|++|+++|+++|..+..|.||||.|+..|+.+++++|+++|+
T Consensus 34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~ 113 (434)
T PHA02874 34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC 113 (434)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence 56788888888888888888888888887777777777777777777777776666553
Q ss_pred --CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCc-------
Q 020270 62 --PWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGK------- 128 (328)
Q Consensus 62 --~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~------- 128 (328)
+++.++..|.||||+|+..|+.+++++|+++|++++..+. |||.|+..++.+++++|++.+......
T Consensus 114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tp 193 (434)
T PHA02874 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP 193 (434)
T ss_pred cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 3455666777777777777777777777777777666544 777777777777777776654211000
Q ss_pred ---------------cc--cccchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeec-cCHH
Q 020270 129 ---------------LV--DSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPE 190 (328)
Q Consensus 129 ---------------l~--~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~ 190 (328)
++ ..+.+.....|.||||.|+..... . ..++..|.+....+ ..+.+|+++++.. .+.+
T Consensus 194 L~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~-i~~Ll~~~~in~~d--~~G~TpLh~A~~~~~~~~ 269 (434)
T PHA02874 194 LHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-A-IELLINNASINDQD--IDGSTPLHHAINPPCDID 269 (434)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-H-HHHHHcCCCCCCcC--CCCCCHHHHHHhcCCcHH
Confidence 00 001111222344555555432211 0 01111222222222 2456676666655 4889
Q ss_pred HHHHHHHcCCCCC
Q 020270 191 VYERMLRTGWGEK 203 (328)
Q Consensus 191 ~~~~L~~~g~~~~ 203 (328)
++++|++.|++..
T Consensus 270 iv~~Ll~~gad~n 282 (434)
T PHA02874 270 IIDILLYHKADIS 282 (434)
T ss_pred HHHHHHHCcCCCC
Confidence 9999999997753
No 14
>PHA02798 ankyrin-like protein; Provisional
Probab=99.92 E-value=3.5e-25 Score=210.86 Aligned_cols=199 Identities=19% Similarity=0.198 Sum_probs=159.4
Q ss_pred cchhHHHHHHHHc-----CCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC---cHHHHHHHHHcCCCCCccCCCCCCH
Q 020270 2 EKEGEQLCEAARN-----GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG---HANLVKTLLEAGAPWNALSSSNLSA 73 (328)
Q Consensus 2 ~~~~t~L~~Aa~~-----g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~g~tp 73 (328)
..|.||||.|+.+ ++.+++++|+++|+|+|.+|..|.||||+|+..+ +.+++++|+++||++|.+|..|.||
T Consensus 69 ~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tp 148 (489)
T PHA02798 69 NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM 148 (489)
T ss_pred CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcH
Confidence 3688999999865 6789999999999999999999999999999976 7899999999999999999999999
Q ss_pred HHHHHHcCC---HHHHHHHHHcCCChhhhhh-----HHHhhcc----CCCCCcchhhhhcccccCC-------ccc----
Q 020270 74 GDFAMDSGH---QEVFEVLLNAGIQAELILG-----TIARAGN----KNSNSNGDYLEDRVSFSEG-------KLV---- 130 (328)
Q Consensus 74 L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~-----~l~~a~~----~~~~~~~~~L~~~~~~~~~-------~l~---- 130 (328)
||+|++.++ .+++++|+++|++++..+. |+|.+.. .++.+.+++|++.+..... .+.
T Consensus 149 L~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~ 228 (489)
T PHA02798 149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN 228 (489)
T ss_pred HHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH
Confidence 999999998 9999999999999987642 7876654 3456777777776531100 000
Q ss_pred -------------------cccchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHH
Q 020270 131 -------------------DSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEV 191 (328)
Q Consensus 131 -------------------~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~ 191 (328)
..+.+..+..|.||||.|+..+..+....+++.|++..+.+. .+.+|++.++..++.++
T Consensus 229 ~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~--~G~TpL~~A~~~~~~~i 306 (489)
T PHA02798 229 SLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITE--LGNTCLFTAFENESKFI 306 (489)
T ss_pred HHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCC--CCCcHHHHHHHcCcHHH
Confidence 113445566788999999888777777788888888777653 56677666666699999
Q ss_pred HHHHHHcCCCC
Q 020270 192 YERMLRTGWGE 202 (328)
Q Consensus 192 ~~~L~~~g~~~ 202 (328)
++.|++.+.+.
T Consensus 307 v~~lL~~~~~~ 317 (489)
T PHA02798 307 FNSILNKKPNK 317 (489)
T ss_pred HHHHHccCCCH
Confidence 99999988654
No 15
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.91 E-value=5.1e-25 Score=209.65 Aligned_cols=189 Identities=22% Similarity=0.248 Sum_probs=125.4
Q ss_pred hhHHHHH-----HHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHH--HhCcHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 020270 4 EGEQLCE-----AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAA--KLGHANLVKTLLEAGAPWNALSSSNLSAGDF 76 (328)
Q Consensus 4 ~~t~L~~-----Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 76 (328)
+.||||. |+..|+.++++.|+++|++++..|..|.||||+|+ ..|+.+++++|+++|++++..+..|.||||+
T Consensus 68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~ 147 (480)
T PHA03100 68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147 (480)
T ss_pred CcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666 66666666666666666666666666666666666 6666666666666666666666666666666
Q ss_pred HHHcC--CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhc------cch
Q 020270 77 AMDSG--HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAW------EKP 144 (328)
Q Consensus 77 A~~~g--~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~------~tp 144 (328)
|+..| +.+++++|+++|++++..+. ||+.|+..++.+.+++|++.+.. .+.....+ .||
T Consensus 148 A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---------~~~~~~~~~~~~~~~t~ 218 (480)
T PHA03100 148 YLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD---------INAGDIETLLFTIFETP 218 (480)
T ss_pred HHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC---------ccCCCCCCCcHHHHHhH
Confidence 66666 66666666666666655444 66666666666666666664421 11111122 588
Q ss_pred HHHHHHHHh--hcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 145 LMEAHAKAI--CSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 145 L~~a~~~~~--~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
||.|+..+. .+....+++.|++....+. .+.+|+++++..++.++++.|++.|++..
T Consensus 219 l~~a~~~~~~~~~iv~~Ll~~g~din~~d~--~g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 219 LHIAACYNEITLEVVNYLLSYGVPINIKDV--YGFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred HHHHHHhCcCcHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 888877666 5555667777776655542 56677766666699999999999998643
No 16
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=203.73 Aligned_cols=186 Identities=20% Similarity=0.187 Sum_probs=149.5
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
.|.||||+|+..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~ 202 (434)
T PHA02874 123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD 202 (434)
T ss_pred CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHH-hhcCC
Q 020270 83 QEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKA-ICSGG 157 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~-~~~~~ 157 (328)
.+++++|++.|++++..+. ||+.|+..+. +.+.+|.. ..+.+..+..|.||||.|+..+ ..+..
T Consensus 203 ~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~----------~~~in~~d~~G~TpLh~A~~~~~~~~iv 271 (434)
T PHA02874 203 YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN----------NASINDQDIDGSTPLHHAINPPCDIDII 271 (434)
T ss_pred HHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc----------CCCCCCcCCCCCCHHHHHHhcCCcHHHH
Confidence 9999999999999877655 9999988754 44444442 1233445566789999997643 22333
Q ss_pred CceeeecccCCcchhHHhccCCceEEeecc-CHHHHHHHHHcCCC
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEA-HPEVYERMLRTGWG 201 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~-~~~~~~~L~~~g~~ 201 (328)
..+++.|++..+.+. .+.+|++.++... +..+++.|+..+..
T Consensus 272 ~~Ll~~gad~n~~d~--~g~TpL~~A~~~~~~~~~ik~ll~~~~~ 314 (434)
T PHA02874 272 DILLYHKADISIKDN--KGENPIDTAFKYINKDPVIKDIIANAVL 314 (434)
T ss_pred HHHHHCcCCCCCCCC--CCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence 456666776665553 4555654444344 67888999987754
No 17
>PHA03095 ankyrin-like protein; Provisional
Probab=99.91 E-value=2.2e-24 Score=204.83 Aligned_cols=199 Identities=20% Similarity=0.157 Sum_probs=152.5
Q ss_pred chhHHHHHHHHcC---CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 020270 3 KEGEQLCEAARNG---DIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG-HANLVKTLLEAGAPWNALSSSNLSAGDFAM 78 (328)
Q Consensus 3 ~~~t~L~~Aa~~g---~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~ 78 (328)
.|.||||.|+..+ +.++++.|+++|+|+|.+|..|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|+
T Consensus 46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL 125 (471)
T ss_pred CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 4789999999999 999999999999999999999999999999999 599999999999999999999999999999
Q ss_pred --HcCCHHHHHHHHHcCCChhhhhh----HHHhhccCC--CCCcchhhhhcccccCC-----------------------
Q 020270 79 --DSGHQEVFEVLLNAGIQAELILG----TIARAGNKN--SNSNGDYLEDRVSFSEG----------------------- 127 (328)
Q Consensus 79 --~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~--~~~~~~~L~~~~~~~~~----------------------- 127 (328)
..++.+++++|+++|++++..+. |++.+...+ ..+.+++|++.+.....
T Consensus 126 ~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~ 205 (471)
T PHA03095 126 SGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIV 205 (471)
T ss_pred hCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHH
Confidence 55688999999999999987665 888877655 34566777665321100
Q ss_pred -ccc--cccchhhhhhccchHHHHHHHHhhc--CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 128 -KLV--DSDSKAIMMAWEKPLMEAHAKAICS--GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 128 -~l~--~~~~~~~~~~~~tpL~~a~~~~~~~--~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
.++ ..+.+..+..|.||||.|+..+.+. ....+++.|.+....+ ..+.+|+++++..++.++++.|++.|++.
T Consensus 206 ~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d--~~g~TpLh~A~~~~~~~~v~~LL~~gad~ 283 (471)
T PHA03095 206 RELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN--RYGQTPLHYAAVFNNPRACRRLIALGADI 283 (471)
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 000 1133445566788888887654321 1123455566555544 25667777666669999999999999764
Q ss_pred C
Q 020270 203 K 203 (328)
Q Consensus 203 ~ 203 (328)
.
T Consensus 284 n 284 (471)
T PHA03095 284 N 284 (471)
T ss_pred c
Confidence 3
No 18
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.90 E-value=4.6e-24 Score=206.87 Aligned_cols=188 Identities=15% Similarity=0.093 Sum_probs=146.1
Q ss_pred chhHHHHHHHHc--CCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCc--HHHHHHHHHcCCCCCccCCCCCCHHHHH-
Q 020270 3 KEGEQLCEAARN--GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGH--ANLVKTLLEAGAPWNALSSSNLSAGDFA- 77 (328)
Q Consensus 3 ~~~t~L~~Aa~~--g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~ga~~n~~d~~g~tpL~~A- 77 (328)
.|.||||.|+.. ++.++|++|+++|+++|.+|..|.||||+|++.|+ .++|++|+++||++|.+|..|+||||.|
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 588999998754 67999999999999999999999999999999995 5999999999999999999999999975
Q ss_pred ------------------------------------HHcCCHHHHHHHHHcCCChhhhhh----HHHhhcc--CCCCCcc
Q 020270 78 ------------------------------------MDSGHQEVFEVLLNAGIQAELILG----TIARAGN--KNSNSNG 115 (328)
Q Consensus 78 ------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~--~~~~~~~ 115 (328)
+..|+.+++++|+++|++++..+. |||.|+. .++.+++
T Consensus 256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIV 335 (764)
T PHA02716 256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDII 335 (764)
T ss_pred HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHH
Confidence 345788999999999999988765 9998754 4577899
Q ss_pred hhhhhcccccCCccccccchhhhhhccchHHHHHHHH--------------hhcCCCceeeecccCCcchhHHhccCCce
Q 020270 116 DYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKA--------------ICSGGGHILNIGFGMGLVDTAIQQYSPVT 181 (328)
Q Consensus 116 ~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~--------------~~~~~~~iLe~g~~~g~~~~~~~~~~~~~ 181 (328)
++|++.+. +.+..+..|.||||.|+... ..+..+.+++.|++....+. .+.+|++
T Consensus 336 klLLe~GA---------DIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~--~G~TPLh 404 (764)
T PHA02716 336 KLLHEYGN---------DLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNC--LGYTPLT 404 (764)
T ss_pred HHHHHcCC---------CCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCC--CCCChHH
Confidence 99987543 34445566779999986531 11222345566666555442 5566665
Q ss_pred EE---eec-cCHHHHHHHHHcCCC
Q 020270 182 HT---ILE-AHPEVYERMLRTGWG 201 (328)
Q Consensus 182 ~~---a~e-~~~~~~~~L~~~g~~ 201 (328)
.+ +.+ ++.+++++|++.|..
T Consensus 405 ~y~~~a~n~~~~dIvklLis~~~~ 428 (764)
T PHA02716 405 SYICTAQNYMYYDIIDCLISDKVL 428 (764)
T ss_pred HHHHHHHhcChHHHHHHHHhCcch
Confidence 22 223 689999999997753
No 19
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.90 E-value=3.9e-24 Score=203.90 Aligned_cols=195 Identities=17% Similarity=0.140 Sum_probs=147.7
Q ss_pred hhHHHHHHHHcC------CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHh---CcHHHHHHHHHcCCCC-CccCCCCCCH
Q 020270 4 EGEQLCEAARNG------DIDKVKALIGSGADVSYFDSDGLTPLMHAAKL---GHANLVKTLLEAGAPW-NALSSSNLSA 73 (328)
Q Consensus 4 ~~t~L~~Aa~~g------~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~-n~~d~~g~tp 73 (328)
+.||||.|+.++ +.++|++||++|||+|.+|..|.||||.|+.. |+.++|++|+++||++ +..|..|+||
T Consensus 69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp 148 (494)
T PHA02989 69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL 148 (494)
T ss_pred CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence 578999887754 46789999999999999999999999988765 6789999999999999 7888899999
Q ss_pred HHHHHHc--CCHHHHHHHHHcCCChhhh-hh----HHHhhccC----CCCCcchhhhhcccccCCc------cc------
Q 020270 74 GDFAMDS--GHQEVFEVLLNAGIQAELI-LG----TIARAGNK----NSNSNGDYLEDRVSFSEGK------LV------ 130 (328)
Q Consensus 74 L~~A~~~--g~~~~v~~Ll~~g~~~~~~-~~----~l~~a~~~----~~~~~~~~L~~~~~~~~~~------l~------ 130 (328)
||+|+.. ++.+++++|+++|++++.. +. |++.++.. ++.+.+++|++.+..-... .+
T Consensus 149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~ 228 (494)
T PHA02989 149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN 228 (494)
T ss_pred HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence 9988754 5889999999999988763 22 88776554 3677888888776321100 00
Q ss_pred -----------------cccchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHH
Q 020270 131 -----------------DSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYE 193 (328)
Q Consensus 131 -----------------~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~ 193 (328)
..+.+..+..|.||||.|+..+..+..+.+++.|.+....+. .+.+|+++++..++.++++
T Consensus 229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~--~G~TpL~~A~~~~~~~iv~ 306 (494)
T PHA02989 229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSK--DGDTVLTYAIKHGNIDMLN 306 (494)
T ss_pred chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCC--CCCCHHHHHHHcCCHHHHH
Confidence 012344556688999999888777777778888887766553 5667776666669999999
Q ss_pred HHHHcCC
Q 020270 194 RMLRTGW 200 (328)
Q Consensus 194 ~L~~~g~ 200 (328)
.|++.+.
T Consensus 307 ~LL~~~p 313 (494)
T PHA02989 307 RILQLKP 313 (494)
T ss_pred HHHhcCC
Confidence 9998763
No 20
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.90 E-value=3.4e-24 Score=207.73 Aligned_cols=191 Identities=17% Similarity=0.136 Sum_probs=143.8
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHH--hCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH---------
Q 020270 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAK--LGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD--------- 79 (328)
Q Consensus 11 Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~--------- 79 (328)
|++.|+.++|+.||++|+++|.+|..|+||||+|+. .++.+++++|+++|+++|.+|..|+||||+|+.
T Consensus 291 AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld 370 (764)
T PHA02716 291 LARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILD 370 (764)
T ss_pred HHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccc
Confidence 456788999999999999999999999999999865 468999999999999999999999999999875
Q ss_pred -----cCCHHHHHHHHHcCCChhhhhh----HHHh----hccCCCCCcchhhhhccccc--------------C--C---
Q 020270 80 -----SGHQEVFEVLLNAGIQAELILG----TIAR----AGNKNSNSNGDYLEDRVSFS--------------E--G--- 127 (328)
Q Consensus 80 -----~g~~~~v~~Ll~~g~~~~~~~~----~l~~----a~~~~~~~~~~~L~~~~~~~--------------~--~--- 127 (328)
.++.+++++|+++|++++..+. ||+. +...++.+++++|++..... + .
T Consensus 371 ~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~l 450 (764)
T PHA02716 371 PETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCII 450 (764)
T ss_pred ccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhH
Confidence 3689999999999999988776 8883 22334556666666542100 0 0
Q ss_pred ------------c---------------------cccccchhhhhhccchHHHHHHHHhhcCC-----CceeeecccCCc
Q 020270 128 ------------K---------------------LVDSDSKAIMMAWEKPLMEAHAKAICSGG-----GHILNIGFGMGL 169 (328)
Q Consensus 128 ------------~---------------------l~~~~~~~~~~~~~tpL~~a~~~~~~~~~-----~~iLe~g~~~g~ 169 (328)
. +...+.+..+..|.||||+|+..+..... +.+++.|++..+
T Consensus 451 hh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~ 530 (764)
T PHA02716 451 HHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI 530 (764)
T ss_pred HHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc
Confidence 0 00012233355789999999876554333 567888888777
Q ss_pred chhHHhccCCceEEeeccCH-----HHHHHHHHcCCCCC
Q 020270 170 VDTAIQQYSPVTHTILEAHP-----EVYERMLRTGWGEK 203 (328)
Q Consensus 170 ~~~~~~~~~~~~~~a~e~~~-----~~~~~L~~~g~~~~ 203 (328)
.+. .|.+|+++++.+++. ++++.|++.|++.+
T Consensus 531 ~d~--~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~ 567 (764)
T PHA02716 531 PTK--NGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD 567 (764)
T ss_pred cCC--CCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence 653 677777777766765 99999999987644
No 21
>PHA02946 ankyin-like protein; Provisional
Probab=99.90 E-value=7.6e-24 Score=198.35 Aligned_cols=187 Identities=10% Similarity=0.069 Sum_probs=129.7
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHH--hCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 020270 7 QLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAK--LGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQE 84 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~ 84 (328)
++..+...++.+.++.+++... ...+.++||.++. .++.++|++|+++|+++|.+|..|.||||+|+..|+.+
T Consensus 12 sl~~~~~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~e 86 (446)
T PHA02946 12 SLYAKYNSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNR 86 (446)
T ss_pred HHHHHHccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHH
Confidence 5788899999999999998531 1235799998774 44789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhhhhh----HHHhhccCCC--CCcchhhhhcccccCCc----------------------cc--cccc
Q 020270 85 VFEVLLNAGIQAELILG----TIARAGNKNS--NSNGDYLEDRVSFSEGK----------------------LV--DSDS 134 (328)
Q Consensus 85 ~v~~Ll~~g~~~~~~~~----~l~~a~~~~~--~~~~~~L~~~~~~~~~~----------------------l~--~~~~ 134 (328)
++++|+++|++++..+. |||.|+..++ .+.+++|++.+..-... ++ ..+.
T Consensus 87 iv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~ 166 (446)
T PHA02946 87 IVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEA 166 (446)
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccc
Confidence 99999999999998766 9998876553 56677888765321100 00 1123
Q ss_pred hhhhhhccchHHHHHHHHhh--cCCCceeeecccCCcchhHHhccCCceEEeecc--CHHHHHHHHHcCCC
Q 020270 135 KAIMMAWEKPLMEAHAKAIC--SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEA--HPEVYERMLRTGWG 201 (328)
Q Consensus 135 ~~~~~~~~tpL~~a~~~~~~--~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~--~~~~~~~L~~~g~~ 201 (328)
+..+..|.||||.|...... .....+++.|++....+. .+.+|+++++..+ +.++++.|+. |++
T Consensus 167 ~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~--~G~TpLH~Aa~~~~~~~~iv~lLl~-gad 234 (446)
T PHA02946 167 RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH--DGNTPLHIVCSKTVKNVDIINLLLP-STD 234 (446)
T ss_pred cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHcCCCcHHHHHHHHc-CCC
Confidence 33445667777776543321 122334555555444332 4555655555443 6778877774 544
No 22
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=172.01 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=112.9
Q ss_pred chhHHHHHHHHcC--CHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHh---CcHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 020270 3 KEGEQLCEAARNG--DIDKVKALIGSGADVSYFD-SDGLTPLMHAAKL---GHANLVKTLLEAGAPWNALSSSNLSAGDF 76 (328)
Q Consensus 3 ~~~t~L~~Aa~~g--~~~~v~~LL~~gad~n~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 76 (328)
.|.||||.|+..+ +.+++++||++|+++|.++ ..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~ 129 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM 129 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 5789999998754 8899999999999999887 4789999988764 47899999999999999999999999998
Q ss_pred HHH--cCCHHHHHHHHHcCCChhhhhh----HHHh-hccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHH
Q 020270 77 AMD--SGHQEVFEVLLNAGIQAELILG----TIAR-AGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAH 149 (328)
Q Consensus 77 A~~--~g~~~~v~~Ll~~g~~~~~~~~----~l~~-a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~ 149 (328)
|+. .++.+++++|+++|++++..+. |+|. +...++.+++++|++.+. +.+..+..|.|||++|.
T Consensus 130 a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga---------di~~~d~~g~tpl~la~ 200 (209)
T PHA02859 130 YMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGI---------DINETNKSGYNCYDLIK 200 (209)
T ss_pred HHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCC---------CCCCCCCCCCCHHHHHh
Confidence 876 4688999999999999887665 8885 455677788888887542 33344455679999986
Q ss_pred HHHh
Q 020270 150 AKAI 153 (328)
Q Consensus 150 ~~~~ 153 (328)
.+..
T Consensus 201 ~~~~ 204 (209)
T PHA02859 201 FRNL 204 (209)
T ss_pred hhhh
Confidence 5544
No 23
>PHA03095 ankyrin-like protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=197.84 Aligned_cols=198 Identities=19% Similarity=0.127 Sum_probs=156.2
Q ss_pred chhHHHHHHHHcC-CHHHHHHHHhCCCCCcccCCCCCcHHHHHH--HhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q 020270 3 KEGEQLCEAARNG-DIDKVKALIGSGADVSYFDSDGLTPLMHAA--KLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79 (328)
Q Consensus 3 ~~~t~L~~Aa~~g-~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 79 (328)
.|.||||+|+..| +.+++++|+++|+++|.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~ 161 (471)
T PHA03095 82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161 (471)
T ss_pred CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 6899999999999 599999999999999999999999999999 5568999999999999999999999999999988
Q ss_pred cC--CHHHHHHHHHcCCChhhhhh----HHHhhccC--CCCCcchhhhhcccccC------------------------C
Q 020270 80 SG--HQEVFEVLLNAGIQAELILG----TIARAGNK--NSNSNGDYLEDRVSFSE------------------------G 127 (328)
Q Consensus 80 ~g--~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~--~~~~~~~~L~~~~~~~~------------------------~ 127 (328)
.+ +.+++++|+++|++++..+. |+|.++.. +..+.+++|+..+.... .
T Consensus 162 ~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~ 241 (471)
T PHA03095 162 SRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVL 241 (471)
T ss_pred cCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHH
Confidence 66 67899999999988876643 78776653 34445555543321100 0
Q ss_pred ccc--cccchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 128 KLV--DSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 128 ~l~--~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
.++ ..+.+..+..|.||||+|+..+.......+++.|++..+.+. .+.+|++.++..++.++++.|++.+.+.
T Consensus 242 ~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~--~g~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 242 PLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS--DGNTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC--CCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 011 124455667788999999988777777788888888777653 6677777777779999999999988653
No 24
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.89 E-value=5e-24 Score=188.82 Aligned_cols=183 Identities=26% Similarity=0.323 Sum_probs=145.1
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHh-CCCCCcccC--------CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIG-SGADVSYFD--------SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLS 72 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~-~gad~n~~d--------~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~t 72 (328)
.+|.|||.+||++||.++|++|++ .++++.... .+|-+||-.|+..||+++||.|+++||++|.....+.|
T Consensus 40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt 119 (615)
T KOG0508|consen 40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST 119 (615)
T ss_pred cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence 467789999999999999999998 466665442 36788888888889999999999999999988888889
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHH
Q 020270 73 AGDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEA 148 (328)
Q Consensus 73 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a 148 (328)
||-.||--||.+++++|+++|+|+++.+. .|++|+..|+.++++||++.+ .+.|.....|.|+||.+
T Consensus 120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~g---------ADvn~ks~kGNTALH~c 190 (615)
T KOG0508|consen 120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQG---------ADVNAKSYKGNTALHDC 190 (615)
T ss_pred cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhC---------CCcchhcccCchHHHhh
Confidence 99999999999999999999999888777 888899999999999988754 36667777778999988
Q ss_pred HHHHhhcCCCceeeecccCCc-chhHHhccCCceEEeeccCHHHHHHHHH
Q 020270 149 HAKAICSGGGHILNIGFGMGL-VDTAIQQYSPVTHTILEAHPEVYERMLR 197 (328)
Q Consensus 149 ~~~~~~~~~~~iLe~g~~~g~-~~~~~~~~~~~~~~a~e~~~~~~~~L~~ 197 (328)
+..+. ..+++...+.|+ .+....|-+|+.-++..|+.+++++|++
T Consensus 191 aEsG~----vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 191 AESGS----VDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ 236 (615)
T ss_pred hhccc----HHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence 66555 445555555555 3334467788877777789888888885
No 25
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.88 E-value=2.8e-23 Score=194.74 Aligned_cols=189 Identities=15% Similarity=0.161 Sum_probs=138.6
Q ss_pred chhHHHHHHHHcCCHHHHHHHHh-----CCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---------------
Q 020270 3 KEGEQLCEAARNGDIDKVKALIG-----SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAP--------------- 62 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~-----~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~--------------- 62 (328)
++.+|+|.|++.|..++++..++ .+..+|.-++.|.||||.|+..|+.++++.+|+.|+.
T Consensus 186 ~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kel 265 (929)
T KOG0510|consen 186 DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKEL 265 (929)
T ss_pred cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHH
Confidence 34555666666666666666655 3445666666777888888888888888888888654
Q ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhh
Q 020270 63 WNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIM 138 (328)
Q Consensus 63 ~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~ 138 (328)
+|..|++|.||||+|++.|+.++++.|+..|++++..+. |||.|+..|+.+.++.|++.. +..+ .+..+
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~---~~rl----lne~D 338 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQES---DTRL----LNESD 338 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCc---Cccc----ccccc
Confidence 466788899999999999999999999999999988776 999999999999888888711 1122 23334
Q ss_pred hhccchHHHHHHHHhhcCCCceeeecccCCcchh-----HHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 139 MAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDT-----AIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 139 ~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~-----~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
..+.||||.|+..++ .+++++..+.|.... ...+.++++.++.++++..+++|+.+|++.
T Consensus 339 ~~g~tpLHlaa~~gH----~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 339 LHGMTPLHLAAKSGH----DRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred ccCCCchhhhhhcCH----HHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 455699999986666 455555555555222 335567777777779999999999999875
No 26
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.88 E-value=6.3e-23 Score=202.99 Aligned_cols=190 Identities=21% Similarity=0.174 Sum_probs=146.0
Q ss_pred chhHHHHHHHHcCCH-HHHHHHHhCCCCCcccCCCCCcHHHHHHHhC-cHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 020270 3 KEGEQLCEAARNGDI-DKVKALIGSGADVSYFDSDGLTPLMHAAKLG-HANLVKTLLEAGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~-~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
.|.||||.|+..|+. +++++|+++|++++.+|..|.||||+|+..| +.+++++|++.|+++|..|..|.||||+|+..
T Consensus 272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~ 351 (682)
T PHA02876 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351 (682)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence 578999999999987 5889999999999999999999999999998 58999999999999999999999999999885
Q ss_pred -CCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhh-
Q 020270 81 -GHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAIC- 154 (328)
Q Consensus 81 -g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~- 154 (328)
++.+++++|++.|++++..+. |||.|+..++.+.+++|++.+. +.+.....+.||||.|+.....
T Consensus 352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~ga---------d~~~~~~~g~T~Lh~A~~~~~~~ 422 (682)
T PHA02876 352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA---------DIEALSQKIGTALHFALCGTNPY 422 (682)
T ss_pred CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---------CccccCCCCCchHHHHHHcCCHH
Confidence 578889999999999988765 9999999999999999987543 2233334456888888543221
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeecc-CHHHHHHHHHcCCCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEA-HPEVYERMLRTGWGEK 203 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~-~~~~~~~L~~~g~~~~ 203 (328)
...+.+++.|.+....+. .+.+|+++++..+ +.+++++|++.|++.+
T Consensus 423 ~~vk~Ll~~gadin~~d~--~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n 470 (682)
T PHA02876 423 MSVKTLIDRGANVNSKNK--DLSTPLHYACKKNCKLDVIEMLLDNGADVN 470 (682)
T ss_pred HHHHHHHhCCCCCCcCCC--CCChHHHHHHHhCCcHHHHHHHHHCCCCCC
Confidence 112345666666554442 4556655555444 6788888888887643
No 27
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.88 E-value=7.4e-23 Score=202.50 Aligned_cols=189 Identities=18% Similarity=0.151 Sum_probs=115.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHH---------------------------
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTL--------------------------- 56 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~L--------------------------- 56 (328)
|.||||.||+.|+.++|++|+++|++++..+..|.||||+|+..|+.++++.|
T Consensus 178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~ 257 (682)
T PHA02876 178 CITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSL 257 (682)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHH
Confidence 55666666666666666666666666666666666666666666555544433
Q ss_pred --HHcCCCCCccCCCCCCHHHHHHHcCCH-HHHHHHHHcCCChhhhhh----HHHhhccCC-CCCcchhhhhcccccCCc
Q 020270 57 --LEAGAPWNALSSSNLSAGDFAMDSGHQ-EVFEVLLNAGIQAELILG----TIARAGNKN-SNSNGDYLEDRVSFSEGK 128 (328)
Q Consensus 57 --l~~ga~~n~~d~~g~tpL~~A~~~g~~-~~v~~Ll~~g~~~~~~~~----~l~~a~~~~-~~~~~~~L~~~~~~~~~~ 128 (328)
++.|+++|..|..|.||||+|+..++. +++++|++.|++++..+. |||.|+..+ ..+.+++|...+.
T Consensus 258 ~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~ga----- 332 (682)
T PHA02876 258 LLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGA----- 332 (682)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCC-----
Confidence 334445555666666777777666664 466666666666665543 666666665 3455555554321
Q ss_pred cccccchhhhhhccchHHHHHHHH-hhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 129 LVDSDSKAIMMAWEKPLMEAHAKA-ICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 129 l~~~~~~~~~~~~~tpL~~a~~~~-~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
+.+..+..+.||||.|+..+ .......+++.|.+.+..+. .+.+|+++++..++.++++.|++.|++..
T Consensus 333 ----din~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~--~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 333 ----DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDY--CDKTPIHYAAVRNNVVIINTLLDYGADIE 402 (682)
T ss_pred ----CCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 23334445568888776532 12223345566666555442 56677777677799999999999887643
No 28
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.88 E-value=3.1e-22 Score=190.24 Aligned_cols=137 Identities=22% Similarity=0.223 Sum_probs=122.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDS-GH 82 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~-g~ 82 (328)
|.||||+||..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.. ++
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~ 247 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD 247 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999975 79
Q ss_pred HHHHHHHHHcCCChhhhhh-----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHH
Q 020270 83 QEVFEVLLNAGIQAELILG-----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAK 151 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~-----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~ 151 (328)
.+++++|+++|++++..+. |||.|. ++.+.+++|+..+ .+.+..+..|.||||.|+..
T Consensus 248 ~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--~~~~~v~~Ll~~g---------adin~~d~~g~TpL~~A~~~ 310 (477)
T PHA02878 248 YDILKLLLEHGVDVNAKSYILGLTALHSSI--KSERKLKLLLEYG---------ADINSLNSYKLTPLSSAVKQ 310 (477)
T ss_pred HHHHHHHHHcCCCCCccCCCCCCCHHHHHc--cCHHHHHHHHHCC---------CCCCCcCCCCCCHHHHHHHH
Confidence 9999999999999987642 999993 4567788888754 24556667778999999764
No 29
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.87 E-value=8.9e-23 Score=172.51 Aligned_cols=116 Identities=21% Similarity=0.149 Sum_probs=94.4
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHHHHcCCCCCccC-CCCCCHHHHHH
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG--HANLVKTLLEAGAPWNALS-SSNLSAGDFAM 78 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~ 78 (328)
+...||||.|++.|+.++|+.|++. ++..|..|.||||+|+..+ +.+++++|+++|+++|.++ ..|.||||+|+
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 3568999999999999999999975 5678889999999999865 8999999999999999997 48999999987
Q ss_pred Hc---CCHHHHHHHHHcCCChhhhhh----HHHhhcc--CCCCCcchhhhh
Q 020270 79 DS---GHQEVFEVLLNAGIQAELILG----TIARAGN--KNSNSNGDYLED 120 (328)
Q Consensus 79 ~~---g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~--~~~~~~~~~L~~ 120 (328)
.. ++.+++++|+++|++++..+. |+|.|+. .++.+++++|+.
T Consensus 96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~ 146 (209)
T PHA02859 96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID 146 (209)
T ss_pred HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence 64 479999999999999976544 5554433 233445555544
No 30
>PHA02917 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.6e-22 Score=196.67 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=139.0
Q ss_pred cchhHHHHHHHHc---CCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC------------------------------
Q 020270 2 EKEGEQLCEAARN---GDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG------------------------------ 48 (328)
Q Consensus 2 ~~~~t~L~~Aa~~---g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g------------------------------ 48 (328)
+.|.||||+||.. |+.++|++||++|++++.++..|.||||+|+..|
T Consensus 30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~ 109 (661)
T PHA02917 30 QFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYM 109 (661)
T ss_pred CCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHH
Confidence 3578999997555 8899999999999999999999999999888643
Q ss_pred -----cHHHHHHHHHcCCCCCccCCCCCCHHHHHH--HcCCHHHHHHHHHcCCChhhhh------------------hHH
Q 020270 49 -----HANLVKTLLEAGAPWNALSSSNLSAGDFAM--DSGHQEVFEVLLNAGIQAELIL------------------GTI 103 (328)
Q Consensus 49 -----~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~------------------~~l 103 (328)
+.++|++|+++||++|..|..|.||||.|+ ..|+.+++++|+++|++++..+ .||
T Consensus 110 a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L 189 (661)
T PHA02917 110 KSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVL 189 (661)
T ss_pred HhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHH
Confidence 467899999999999999999999999654 5789999999999999986432 388
Q ss_pred Hhhcc-----------CCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhc--CCCceeeecccCCcc
Q 020270 104 ARAGN-----------KNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICS--GGGHILNIGFGMGLV 170 (328)
Q Consensus 104 ~~a~~-----------~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~--~~~~iLe~g~~~g~~ 170 (328)
+.|+. .++.+++++|++.+. +.+..+..|.||||.|+..+... ..+.++ .|.+....
T Consensus 190 ~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga---------dvn~~d~~G~TpLh~A~~~g~~~~eivk~Li-~g~d~~~~ 259 (661)
T PHA02917 190 HLYIISHLYSESDTRAYVRPEVVKCLINHGI---------KPSSIDKNYCTALQYYIKSSHIDIDIVKLLM-KGIDNTAY 259 (661)
T ss_pred HHHHhhcccccccccccCcHHHHHHHHHCCC---------CcccCCCCCCcHHHHHHHcCCCcHHHHHHHH-hCCccccc
Confidence 88864 346688888887553 44555666779999998776532 222233 24433211
Q ss_pred h--hHHhccCCceEEe-------e--ccCHHHHHHHHHcCCC
Q 020270 171 D--TAIQQYSPVTHTI-------L--EAHPEVYERMLRTGWG 201 (328)
Q Consensus 171 ~--~~~~~~~~~~~~a-------~--e~~~~~~~~L~~~g~~ 201 (328)
. ....+.++.+.++ . ..+.++++.|++.|++
T Consensus 260 ~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~ 301 (661)
T PHA02917 260 SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP 301 (661)
T ss_pred ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence 0 0001222222222 1 1278999999999975
No 31
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=192.67 Aligned_cols=191 Identities=18% Similarity=0.116 Sum_probs=138.3
Q ss_pred chhHHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC------cHHHHHHHHHcCCCCCccCCCCCCHH
Q 020270 3 KEGEQLCEAARNG--DIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG------HANLVKTLLEAGAPWNALSSSNLSAG 74 (328)
Q Consensus 3 ~~~t~L~~Aa~~g--~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g------~~~~v~~Ll~~ga~~n~~d~~g~tpL 74 (328)
+|.||||.++..+ +.++|++||++|||+|.++ .+.||||.|+.++ +.++|++|+++||++|.+|..|.|||
T Consensus 34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL 112 (494)
T PHA02989 34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI 112 (494)
T ss_pred CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 4788988766543 7899999999999999887 5799999998754 57899999999999999999999999
Q ss_pred HHHHHc---CCHHHHHHHHHcCCCh-hhhhh----HHHhhccC--CCCCcchhhhhcccccCCccccccchh-hhhhccc
Q 020270 75 DFAMDS---GHQEVFEVLLNAGIQA-ELILG----TIARAGNK--NSNSNGDYLEDRVSFSEGKLVDSDSKA-IMMAWEK 143 (328)
Q Consensus 75 ~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~----~l~~a~~~--~~~~~~~~L~~~~~~~~~~l~~~~~~~-~~~~~~t 143 (328)
|.|+.. ++.+++++|+++|+++ +..+. |||.|+.. ++.+++++|++.+.. .+. .+..+.|
T Consensus 113 ~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad---------i~~~~~~~g~t 183 (494)
T PHA02989 113 VCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN---------LFEKTSLYGLT 183 (494)
T ss_pred HHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---------ccccccccCCC
Confidence 988765 6789999999999999 66554 99987654 567889999886532 111 1233457
Q ss_pred hHHHHHHHHhhcCC----CceeeecccCCcch------------------------------------hHHhccCCceEE
Q 020270 144 PLMEAHAKAICSGG----GHILNIGFGMGLVD------------------------------------TAIQQYSPVTHT 183 (328)
Q Consensus 144 pL~~a~~~~~~~~~----~~iLe~g~~~g~~~------------------------------------~~~~~~~~~~~~ 183 (328)
|||.|...+...+. +.+++.|++....+ ....|.+|++++
T Consensus 184 pL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~A 263 (494)
T PHA02989 184 PMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLIS 263 (494)
T ss_pred hHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 77776554422111 12222232211100 111356777666
Q ss_pred eeccCHHHHHHHHHcCCCCC
Q 020270 184 ILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 184 a~e~~~~~~~~L~~~g~~~~ 203 (328)
+..++.++++.|++.|++..
T Consensus 264 a~~~~~~~v~~LL~~Gadin 283 (494)
T PHA02989 264 AKVDNYEAFNYLLKLGDDIY 283 (494)
T ss_pred HHhcCHHHHHHHHHcCCCcc
Confidence 66699999999999998754
No 32
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.87 E-value=8.1e-23 Score=191.68 Aligned_cols=193 Identities=20% Similarity=0.157 Sum_probs=143.2
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
++.+|+|.|+..|+.++++.|+++|+|+|..|..|.||||.||..++.|..+.|++.||++...|.+|++|+|.|+.+|.
T Consensus 120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s 199 (929)
T KOG0510|consen 120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS 199 (929)
T ss_pred hccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence 45678888888888888888888888888888888888888888888887788888888888888888888888888888
Q ss_pred HHHHHHHHH-----cCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccc------cchhhhhhccchHHH
Q 020270 83 QEVFEVLLN-----AGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDS------DSKAIMMAWEKPLME 147 (328)
Q Consensus 83 ~~~v~~Ll~-----~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~------~~~~~~~~~~tpL~~ 147 (328)
.++.++.+. ++..+|..++ |||.|...++.+.++..++.+.-....-.|. -.+..+.+|.||||+
T Consensus 200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~ 279 (929)
T KOG0510|consen 200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHY 279 (929)
T ss_pred hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHH
Confidence 888888887 5566666655 8888888888888887777653322111111 123345567799999
Q ss_pred HHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHH
Q 020270 148 AHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLR 197 (328)
Q Consensus 148 a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~ 197 (328)
|+++|..+....++..|.+....+ .++.+|++.+|+.|+.+.++.|++
T Consensus 280 a~r~G~~~svd~Ll~~Ga~I~~kn--~d~~spLH~AA~yg~~ntv~rLL~ 327 (929)
T KOG0510|consen 280 AARQGGPESVDNLLGFGASINSKN--KDEESPLHFAAIYGRINTVERLLQ 327 (929)
T ss_pred HHHcCChhHHHHHHHcCCcccccC--CCCCCchHHHHHcccHHHHHHHHh
Confidence 988887665555665555544433 245567666667788888888887
No 33
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.87 E-value=3.5e-22 Score=200.69 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=136.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQ 83 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~ 83 (328)
..++||.||..|+.++++.|+++|+|+|..|..|.||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+..||.
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~ 604 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH 604 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhhhhh--HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCCcee
Q 020270 84 EVFEVLLNAGIQAELILG--TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHIL 161 (328)
Q Consensus 84 ~~v~~Ll~~g~~~~~~~~--~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iL 161 (328)
+++++|++.++..+.... +|+.|+..++.+.+++|++.+. +.+..+..|.||||.|+..+..+....++
T Consensus 605 ~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga---------din~~d~~G~TpLh~A~~~g~~~iv~~Ll 675 (823)
T PLN03192 605 KIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGL---------NVDSEDHQGATALQVAMAEDHVDMVRLLI 675 (823)
T ss_pred HHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCC---------CCCCCCCCCCCHHHHHHHCCcHHHHHHHH
Confidence 999999998876654443 8999999999999999987543 34445566779999998777766666677
Q ss_pred eecccCCcc
Q 020270 162 NIGFGMGLV 170 (328)
Q Consensus 162 e~g~~~g~~ 170 (328)
+.|++....
T Consensus 676 ~~GAdv~~~ 684 (823)
T PLN03192 676 MNGADVDKA 684 (823)
T ss_pred HcCCCCCCC
Confidence 776665443
No 34
>PHA02798 ankyrin-like protein; Provisional
Probab=99.86 E-value=5e-22 Score=189.26 Aligned_cols=191 Identities=18% Similarity=0.163 Sum_probs=142.5
Q ss_pred hhHHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHh-----CcHHHHHHHHHcCCCCCccCCCCCCHHHH
Q 020270 4 EGEQLCEAAR--NGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKL-----GHANLVKTLLEAGAPWNALSSSNLSAGDF 76 (328)
Q Consensus 4 ~~t~L~~Aa~--~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 76 (328)
+.|+++.+.. .++.++|++|+++|+|+|.+|..|.||||.|+.+ ++.+++++|+++||++|.+|..|.||||+
T Consensus 36 ~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~ 115 (489)
T PHA02798 36 EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC 115 (489)
T ss_pred cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence 4566664443 4589999999999999999999999999999864 67999999999999999999999999999
Q ss_pred HHHcC---CHHHHHHHHHcCCChhhhhh----HHHhhccCCC---CCcchhhhhcccccCCccccccchhh-hhhccchH
Q 020270 77 AMDSG---HQEVFEVLLNAGIQAELILG----TIARAGNKNS---NSNGDYLEDRVSFSEGKLVDSDSKAI-MMAWEKPL 145 (328)
Q Consensus 77 A~~~g---~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~---~~~~~~L~~~~~~~~~~l~~~~~~~~-~~~~~tpL 145 (328)
|+..+ +.+++++|+++|++++..+. |+|.|+..++ .+++++|++.+. +.+.. ...+.|||
T Consensus 116 a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga---------din~~~~~~~~t~L 186 (489)
T PHA02798 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV---------DINTHNNKEKYDTL 186 (489)
T ss_pred HHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC---------CcccccCcCCCcHH
Confidence 99875 78999999999999998776 9999999887 788899887652 11111 12345888
Q ss_pred HHHHHHHhhcCC----CceeeecccCCc-------------------------------------chhHHhccCCceEEe
Q 020270 146 MEAHAKAICSGG----GHILNIGFGMGL-------------------------------------VDTAIQQYSPVTHTI 184 (328)
Q Consensus 146 ~~a~~~~~~~~~----~~iLe~g~~~g~-------------------------------------~~~~~~~~~~~~~~a 184 (328)
|.+......... +.+++.|+.... ......+.+|+++++
T Consensus 187 h~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~ 266 (489)
T PHA02798 187 HCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSV 266 (489)
T ss_pred HHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHH
Confidence 876554321111 122222221110 001124567777676
Q ss_pred eccCHHHHHHHHHcCCCCC
Q 020270 185 LEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 185 ~e~~~~~~~~L~~~g~~~~ 203 (328)
..++.+++++|++.|++..
T Consensus 267 ~~~~~~~v~~LL~~GAdin 285 (489)
T PHA02798 267 SHNNRKIFEYLLQLGGDIN 285 (489)
T ss_pred HcCcHHHHHHHHHcCCccc
Confidence 6799999999999998754
No 35
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-22 Score=179.38 Aligned_cols=143 Identities=24% Similarity=0.245 Sum_probs=129.4
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
+|.+||-.|+..||+++||.|+++|+++|.......|||-.||..|++++||+|+++|||++..|+.|.|.||+||..||
T Consensus 83 egappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh 162 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH 162 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhc
Q 020270 83 QEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICS 155 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~ 155 (328)
.+++++|++.|+++|.... +||.++..|+.+++++|++.+. -++.+.. |.|||+.|+..+...
T Consensus 163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga-----~i~~d~~-----GmtPL~~Aa~tG~~~ 229 (615)
T KOG0508|consen 163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA-----KIDVDGH-----GMTPLLLAAVTGHTD 229 (615)
T ss_pred hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc-----eeeecCC-----CCchHHHHhhhcchH
Confidence 9999999999999998765 9999999999999999998653 2333333 459999998777643
No 36
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.85 E-value=5.8e-21 Score=148.52 Aligned_cols=141 Identities=23% Similarity=0.178 Sum_probs=116.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGAD-VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQ 83 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~ 83 (328)
..-+.+|+..+.+..|+.||+..++ +|.+|.+|+||||-|+.+||++||+.|+..||+++++...|+||||-||.-++.
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence 3457899999999999999998776 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhhhhh----HHHhhccCCCCC-cchhhhhcccccCCccccccchhhhhhccchHHHHHHHHh
Q 020270 84 EVFEVLLNAGIQAELILG----TIARAGNKNSNS-NGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAI 153 (328)
Q Consensus 84 ~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~-~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~ 153 (328)
+|+..||++|++++.... |||.++...+.- .+.+|+..... .........+||++.|-+.++
T Consensus 144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi--------~pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYI--------HPGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhcccc--------ChhhhcCccchHHHHHHHhhh
Confidence 999999999999998776 999998776543 34444432211 122233445799999855443
No 37
>PHA02795 ankyrin-like protein; Provisional
Probab=99.84 E-value=2.3e-21 Score=176.83 Aligned_cols=181 Identities=15% Similarity=0.044 Sum_probs=126.1
Q ss_pred HHHHcCCHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHH--hCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 10 EAARNGDIDKVKALIGSGADVS------YFDSDGLTPLMHAAK--LGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 10 ~Aa~~g~~~~v~~LL~~gad~n------~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.|+..+..+++++|+.+|+++| .++..++|+||.|+. .|+.++|++|+++||++|.. .+.||+|.|+..+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~ 160 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK 160 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence 6777888888888888888877 667778888888888 77888888888888888774 3478888888888
Q ss_pred CHHHHHHHHHcCCChhhhh--------h--HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHH
Q 020270 82 HQEVFEVLLNAGIQAELIL--------G--TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAK 151 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~--------~--~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~ 151 (328)
+.+++++|+++|++.+... + +++.+...++.+++++|++.+. +.+..+..|.||||+|+..
T Consensus 161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GA---------DIN~kD~~G~TpLh~Aa~~ 231 (437)
T PHA02795 161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIE---------DINQLDAGGRTLLYRAIYA 231 (437)
T ss_pred cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcC---------CcCcCCCCCCCHHHHHHHc
Confidence 8888888888887432111 1 4555666666777777776442 3344455566888888777
Q ss_pred HhhcCCCceeeecccCCcchhHHhccCCceEEeecc--------CHHHHHHHHHcCCCCC
Q 020270 152 AICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEA--------HPEVYERMLRTGWGEK 203 (328)
Q Consensus 152 ~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~--------~~~~~~~L~~~g~~~~ 203 (328)
+..+....+++.|.+....+. .+.+|++.++..+ |.++++.|++.|++.+
T Consensus 232 g~~eiVelLL~~GAdIN~~d~--~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 232 GYIDLVSWLLENGANVNAVMS--NGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred CCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 666656666666666655442 4555555555445 4688888888886543
No 38
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.84 E-value=3.8e-22 Score=185.91 Aligned_cols=196 Identities=21% Similarity=0.183 Sum_probs=168.8
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
.|-|.||.||.+|+.+++++|+++.+-++..|..|.+|||+|+++|+.++|+.|+.++..+|+.+..|.||||.|++.||
T Consensus 48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh 127 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH 127 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCC
Q 020270 83 QEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGG 158 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~ 158 (328)
.+++.+|+++|++.-+.++ ++..|++.|...+++.|++. .+....+............-+|||.|++++..+...
T Consensus 128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~ 206 (854)
T KOG0507|consen 128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQ 206 (854)
T ss_pred hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHH
Confidence 9999999999999988877 99999999999999999887 332222111122223334559999999999988888
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE 202 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~ 202 (328)
.+++.|++.+... ..++.++-++..+..+++..|++.|.+.
T Consensus 207 ~ll~ag~din~~t---~~gtalheaalcgk~evvr~ll~~gin~ 247 (854)
T KOG0507|consen 207 ALLEAGFDINYTT---EDGTALHEAALCGKAEVVRFLLEIGINT 247 (854)
T ss_pred HHHhcCCCccccc---ccchhhhhHhhcCcchhhhHHHhhcccc
Confidence 9999999877644 5677777777789999999999988664
No 39
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.84 E-value=2.1e-20 Score=136.22 Aligned_cols=88 Identities=35% Similarity=0.519 Sum_probs=82.8
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 020270 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFE 87 (328)
Q Consensus 8 L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~ 87 (328)
||+||+.|+.+++++|++.+++++. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 7999999999999999999988887 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhhh
Q 020270 88 VLLNAGIQAELI 99 (328)
Q Consensus 88 ~Ll~~g~~~~~~ 99 (328)
+|+++|++++..
T Consensus 77 ~Ll~~g~~~~~~ 88 (89)
T PF12796_consen 77 LLLEHGADVNIR 88 (89)
T ss_dssp HHHHTTT-TTSS
T ss_pred HHHHcCCCCCCc
Confidence 999999998754
No 40
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=153.65 Aligned_cols=121 Identities=22% Similarity=0.205 Sum_probs=109.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHh------CCCCCcccCCCCCcHHHHHHHhCc----HHHHHHHHHcCCCCCccCC-CC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIG------SGADVSYFDSDGLTPLMHAAKLGH----ANLVKTLLEAGAPWNALSS-SN 70 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~------~gad~n~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga~~n~~d~-~g 70 (328)
++|.||||.||+.|+.++|+.|+. .|++++.+|..|.||||+|+..|+ .+++++|+++|+++|.++. .|
T Consensus 19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 357899999999999999999854 468999999999999999999998 5899999999999999985 89
Q ss_pred CCHHHHHHHcCCHHHHHHHHH-cCCChhhhhh----HHHhhccCCCCCcchhhhhcc
Q 020270 71 LSAGDFAMDSGHQEVFEVLLN-AGIQAELILG----TIARAGNKNSNSNGDYLEDRV 122 (328)
Q Consensus 71 ~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~ 122 (328)
.||||+|+..++.+++++|+. .|++++..+. |++.|...++.+++++|.+..
T Consensus 99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~ 155 (169)
T PHA02741 99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIV 155 (169)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999997 5999887665 999999999988888888754
No 41
>PHA02730 ankyrin-like protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=176.18 Aligned_cols=194 Identities=16% Similarity=0.097 Sum_probs=140.8
Q ss_pred cchhHHHHHHHHcC---CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHHHHcCC--CCCccCCCCCCHH
Q 020270 2 EKEGEQLCEAARNG---DIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG--HANLVKTLLEAGA--PWNALSSSNLSAG 74 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g---~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga--~~n~~d~~g~tpL 74 (328)
+.|.||||+|+..| +.++|++||++|||++.+|..|.||||+|+..+ +.++|++|+++|+ +++..+..+.+||
T Consensus 39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l 118 (672)
T PHA02730 39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDL 118 (672)
T ss_pred CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchH
Confidence 36899999999997 599999999999999999999999999999977 7999999999965 5588888899999
Q ss_pred HHHHH--cCCHHHHHHHHH-cCCChhhh-------hh--HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhcc
Q 020270 75 DFAMD--SGHQEVFEVLLN-AGIQAELI-------LG--TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWE 142 (328)
Q Consensus 75 ~~A~~--~g~~~~v~~Ll~-~g~~~~~~-------~~--~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~ 142 (328)
+.++. .++.+++++|+. .+++++.. .+ |+..+...++.+++++|+..+....+--. .....+....
T Consensus 119 ~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~--~~~~~~~~~c 196 (672)
T PHA02730 119 YSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVF--RSCMYDSDRC 196 (672)
T ss_pred HHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccc--ccccccCCcc
Confidence 99888 889999999997 66786654 12 89999999999999999998753211100 0000111122
Q ss_pred ch-HHHHHHH--HhhcCCCceeeecccCCc-chhH-HhccCCceE--EeeccCHHHHHHHHH
Q 020270 143 KP-LMEAHAK--AICSGGGHILNIGFGMGL-VDTA-IQQYSPVTH--TILEAHPEVYERMLR 197 (328)
Q Consensus 143 tp-L~~a~~~--~~~~~~~~iLe~g~~~g~-~~~~-~~~~~~~~~--~a~e~~~~~~~~L~~ 197 (328)
+| ||+..-. ........++++....|+ .+.. ..+.+|+++ +..+++.+++++|++
T Consensus 197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258 (672)
T ss_pred chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence 34 4423211 123445556666666665 2222 245566552 334478999999999
No 42
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.82 E-value=4.9e-20 Score=150.14 Aligned_cols=122 Identities=20% Similarity=0.186 Sum_probs=108.9
Q ss_pred cchhHHHHHHHHcCCH----HHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHH---HHHHHHHcCCCCCccC-CCCCCH
Q 020270 2 EKEGEQLCEAARNGDI----DKVKALIGSGADVSYFDSDGLTPLMHAAKLGHAN---LVKTLLEAGAPWNALS-SSNLSA 73 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~----~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~---~v~~Ll~~ga~~n~~d-~~g~tp 73 (328)
+++.++||.||+.|+. +++++|++.|++++.+|..|+||||+|+..|+.+ ++++|+++|+++|.+| ..|.||
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp 97 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL 97 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence 3567899999999998 5666788899999999999999999999998765 4899999999999998 589999
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCChhhhhh----HHHhhccCCCCCcchhhhhccc
Q 020270 74 GDFAMDSGHQEVFEVLLN-AGIQAELILG----TIARAGNKNSNSNGDYLEDRVS 123 (328)
Q Consensus 74 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~ 123 (328)
||+|+..++.+++++|+. .|++++..+. |++.|+..++.+++++|++.+.
T Consensus 98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga 152 (166)
T PHA02743 98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA 152 (166)
T ss_pred HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999995 8999988765 9999999999999999988653
No 43
>PHA02795 ankyrin-like protein; Provisional
Probab=99.81 E-value=9.1e-20 Score=166.46 Aligned_cols=184 Identities=14% Similarity=0.078 Sum_probs=139.6
Q ss_pred cchhHHHHHHHH--cCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccC------CCCCCH
Q 020270 2 EKEGEQLCEAAR--NGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS------SSNLSA 73 (328)
Q Consensus 2 ~~~~t~L~~Aa~--~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d------~~g~tp 73 (328)
+.+.|+||.|+. .|+.++|++||++|||++.. ++.||||.|+..++.+++++|+++|++.+... ..+.||
T Consensus 114 ~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~ 191 (437)
T PHA02795 114 NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR 191 (437)
T ss_pred ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence 356899999999 99999999999999999985 45899999999999999999999998543221 347899
Q ss_pred HHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHH
Q 020270 74 GDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAH 149 (328)
Q Consensus 74 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~ 149 (328)
+|.|+..++.+++++|+++|++++..+. ||+.|+..++.+.+++|++.+. +.+..+..|.||||.|+
T Consensus 192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA---------dIN~~d~~G~TpLh~Aa 262 (437)
T PHA02795 192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA---------NVNAVMSNGYTCLDVAV 262 (437)
T ss_pred hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---------CCCCcCCCCCCHHHHHH
Confidence 9999999999999999999999998776 9999999999999999998653 34455566779999998
Q ss_pred HHHhh----cCCCceeeecccCCc-chhHHhccCCceEEeeccCHHHHHHHHHcCC
Q 020270 150 AKAIC----SGGGHILNIGFGMGL-VDTAIQQYSPVTHTILEAHPEVYERMLRTGW 200 (328)
Q Consensus 150 ~~~~~----~~~~~iLe~g~~~g~-~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~ 200 (328)
..+.. .....++++....|. .+.... +. ..-.. .+.++++.+++...
T Consensus 263 ~~g~~~~~~~~~~eIvelLL~~gadI~~~~~--~~-~~~~~-~n~~~ik~lI~y~~ 314 (437)
T PHA02795 263 DRGSVIARRETHLKILEILLREPLSIDCIKL--AI-LNNTI-ENHDVIKLCIKYFM 314 (437)
T ss_pred HcCCcccccccHHHHHHHHHhCCCCCCchhH--Hh-hhccc-chHHHHHHHHHHHH
Confidence 77631 112245555444443 111000 11 01111 26788888887653
No 44
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.81 E-value=2e-19 Score=158.09 Aligned_cols=112 Identities=20% Similarity=0.173 Sum_probs=100.8
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccC----CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFD----SDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL-SSSNLSAGDFAM 78 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpL~~A~ 78 (328)
..++||.|+..|+.+++++||++|||+|.++ ..|.||||+|+..|+.+++++|+++||++|.. +..|.||||+|+
T Consensus 33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa 112 (300)
T PHA02884 33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV 112 (300)
T ss_pred CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence 3567888888899999999999999999974 58999999999999999999999999999996 457999999999
Q ss_pred HcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcc
Q 020270 79 DSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNG 115 (328)
Q Consensus 79 ~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~ 115 (328)
..++.+++++|+++|++++..+. |++.|+..++...+
T Consensus 113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~ 153 (300)
T PHA02884 113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLA 153 (300)
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHH
Confidence 99999999999999999998765 99998877665544
No 45
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.80 E-value=3.5e-20 Score=159.72 Aligned_cols=143 Identities=24% Similarity=0.266 Sum_probs=123.3
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCcHHHHHHHh-----CcHHHHHHHHHcCCCCCcc-CCCCCCHH
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAKL-----GHANLVKTLLEAGAPWNAL-SSSNLSAG 74 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~g-ad~n~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~ga~~n~~-d~~g~tpL 74 (328)
++|+|+||+|+..+|+++|+.||+.| +++|.++.-|+||+|+|+-. .+.++|..|..-| ++|++ ...|+|+|
T Consensus 266 sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTAL 344 (452)
T KOG0514|consen 266 SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTAL 344 (452)
T ss_pred CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhh
Confidence 57999999999999999999999998 79999999999999999864 4678899998765 88987 45699999
Q ss_pred HHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHH
Q 020270 75 DFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHA 150 (328)
Q Consensus 75 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~ 150 (328)
++|+++|..++|+.||..|+++|+.+. +|..|+.+||.+++++|+....++ ..+-|.|+. |+|+.|..
T Consensus 345 MLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd-~sLtD~DgS-------TAl~IAle 416 (452)
T KOG0514|consen 345 MLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD-ISLTDVDGS-------TALSIALE 416 (452)
T ss_pred hhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc-ceeecCCCc-------hhhhhHHh
Confidence 999999999999999999999999987 999999999999999999877652 223333433 99999955
Q ss_pred HHh
Q 020270 151 KAI 153 (328)
Q Consensus 151 ~~~ 153 (328)
.+.
T Consensus 417 agh 419 (452)
T KOG0514|consen 417 AGH 419 (452)
T ss_pred cCc
Confidence 544
No 46
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.80 E-value=2.2e-20 Score=150.69 Aligned_cols=111 Identities=24% Similarity=0.182 Sum_probs=101.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
+.|.|||.||+..|++++|++||..|||++.......|+|++|++.|..++|++||+++.|+|.-|.+|-|||-+|++.|
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn 237 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN 237 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence 46899999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCChhhhhh----HHHhhccCCCC
Q 020270 82 HQEVFEVLLNAGIQAELILG----TIARAGNKNSN 112 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~ 112 (328)
|.+|++.|++.|++++..+. ++..|...|..
T Consensus 238 hvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr 272 (296)
T KOG0502|consen 238 HVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR 272 (296)
T ss_pred hHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence 99999999999999987665 66666666544
No 47
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.80 E-value=2.9e-19 Score=145.59 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=90.6
Q ss_pred chhHHHHHHHHcCCHHH---HHHHHhCCCCCcccC-CCCCcHHHHHHHhCcHHHHHHHHH-cCCCCCccCCCCCCHHHHH
Q 020270 3 KEGEQLCEAARNGDIDK---VKALIGSGADVSYFD-SDGLTPLMHAAKLGHANLVKTLLE-AGAPWNALSSSNLSAGDFA 77 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~---v~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A 77 (328)
.|.||||+||..|+.+. +++|+++|+++|.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 56 ~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A 135 (166)
T PHA02743 56 HGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA 135 (166)
T ss_pred CCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHH
Confidence 57899999999998654 899999999999998 589999999999999999999996 7999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCChhhh
Q 020270 78 MDSGHQEVFEVLLNAGIQAELI 99 (328)
Q Consensus 78 ~~~g~~~~v~~Ll~~g~~~~~~ 99 (328)
+..++.+++++|+++|++++..
T Consensus 136 ~~~~~~~iv~~Ll~~ga~~~~~ 157 (166)
T PHA02743 136 YKMRDRRMMEILRANGAVCDDP 157 (166)
T ss_pred HHcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999999999998754
No 48
>PHA02917 ankyrin-like protein; Provisional
Probab=99.78 E-value=2.1e-19 Score=174.93 Aligned_cols=178 Identities=13% Similarity=0.008 Sum_probs=134.4
Q ss_pred HHHHHHHHhCCCCCcccCCCCCcHHHHHHHh---CcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH----HHHHHH
Q 020270 17 IDKVKALIGSGADVSYFDSDGLTPLMHAAKL---GHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQ----EVFEVL 89 (328)
Q Consensus 17 ~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~----~~v~~L 89 (328)
++.|+.||.+|.+++.+|..|.||||+||.. |+.++|++||++|++++..+..|.||||.|+..|+. ++++.|
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L 91 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL 91 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence 5788999999999999999999999998666 789999999999999999999999999999999995 456788
Q ss_pred HHcCCChhhhh--hHHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHH--HhhcCCCceeeecc
Q 020270 90 LNAGIQAELIL--GTIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAK--AICSGGGHILNIGF 165 (328)
Q Consensus 90 l~~g~~~~~~~--~~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~--~~~~~~~~iLe~g~ 165 (328)
++.+...+..+ .+++.|+..++.+++++|++.+. +.+..+..|.||||.++.. +..+..+.+++.|+
T Consensus 92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Ga---------din~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga 162 (661)
T PHA02917 92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGF---------DLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC 162 (661)
T ss_pred HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCC---------CCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC
Confidence 87654333333 36778889999999999998653 4445556677999976432 34444555666666
Q ss_pred cCCcchhH------------HhccCCceEEee-----------ccCHHHHHHHHHcCCCCC
Q 020270 166 GMGLVDTA------------IQQYSPVTHTIL-----------EAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 166 ~~g~~~~~------------~~~~~~~~~~a~-----------e~~~~~~~~L~~~g~~~~ 203 (328)
+....+.. ....+|+++++. .++.+++++|+++|++.+
T Consensus 163 ~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn 223 (661)
T PHA02917 163 SVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS 223 (661)
T ss_pred CccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc
Confidence 65432211 011366666543 358999999999998754
No 49
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.78 E-value=5.3e-19 Score=142.46 Aligned_cols=119 Identities=19% Similarity=0.151 Sum_probs=64.4
Q ss_pred chhHHHHHHHHcCC-HHHHHH--HHhC--CCCCcccCCCCCcHHHHHHHhCcH---HHHHHHHHcCCCCCccC-CCCCCH
Q 020270 3 KEGEQLCEAARNGD-IDKVKA--LIGS--GADVSYFDSDGLTPLMHAAKLGHA---NLVKTLLEAGAPWNALS-SSNLSA 73 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~-~~~v~~--LL~~--gad~n~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~ga~~n~~d-~~g~tp 73 (328)
.|.||||+||+.|+ .+.+.. .+.. +..++.+|..|.||||+|+..|+. +++++|+++|+++|.++ ..|.||
T Consensus 16 ~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~ 95 (154)
T PHA02736 16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTP 95 (154)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcH
Confidence 45666666666665 243322 1111 122344555566666666665554 34555666666666655 356666
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCChhhhhh----HHHhhccCCCCCcchhhhhc
Q 020270 74 GDFAMDSGHQEVFEVLLN-AGIQAELILG----TIARAGNKNSNSNGDYLEDR 121 (328)
Q Consensus 74 L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~ 121 (328)
||+|+..|+.+++++|+. .|++++..+. |++.|+..++.+++++|+..
T Consensus 96 Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ 148 (154)
T PHA02736 96 LHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK 148 (154)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 666666666666666665 3555554443 66666665555555555543
No 50
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.77 E-value=4e-20 Score=183.21 Aligned_cols=200 Identities=23% Similarity=0.250 Sum_probs=162.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
+++.||+|.|+..|..+.+++++.+|+++|.++..|.||||.|+..++..+|+.++++|+++|..+..|+||+|+|+..|
T Consensus 372 ~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g 451 (1143)
T KOG4177|consen 372 EKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKG 451 (1143)
T ss_pred ccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhccccc---CC-------------------ccc--cc
Q 020270 82 -HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFS---EG-------------------KLV--DS 132 (328)
Q Consensus 82 -~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~---~~-------------------~l~--~~ 132 (328)
+.++...+++.|++++.... ||+.++..++.+.+..++...... .. .++ ..
T Consensus 452 ~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga 531 (1143)
T KOG4177|consen 452 RYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGA 531 (1143)
T ss_pred cHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCC
Confidence 88888888899988887766 888899888888888877754111 00 122 11
Q ss_pred cchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 133 DSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 133 ~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
+.+.....+.||||.|+..+.....+.+|+.|.+....+ ..+++|++.++..++.+++++|+++|+..+
T Consensus 532 ~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~--~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn 600 (1143)
T KOG4177|consen 532 NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKD--KLGYTPLHQAAQQGHNDIAELLLKHGASVN 600 (1143)
T ss_pred ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccC--CCCCChhhHHHHcChHHHHHHHHHcCCCCC
Confidence 334444556799999999998888888999988887766 366777777777799999999999998754
No 51
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.76 E-value=2.5e-18 Score=172.91 Aligned_cols=141 Identities=17% Similarity=0.064 Sum_probs=120.8
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.+|.||||.||..|+.++++.|+++|+|+|.+|.+|.||||+|+..|+.+++++|++.++..+. ..|.+|||.|+..|
T Consensus 556 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g 633 (823)
T PLN03192 556 SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRN 633 (823)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhC
Confidence 3689999999999999999999999999999999999999999999999999999998876553 45779999999999
Q ss_pred CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhc-cchHHHHHHHHh
Q 020270 82 HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAW-EKPLMEAHAKAI 153 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~-~tpL~~a~~~~~ 153 (328)
+.++++.|+++|++++..+. |||.|+..++.+++++|+..+. +.+..+..+ .||+..+.....
T Consensus 634 ~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA---------dv~~~~~~g~~t~~~l~~~~~~ 701 (823)
T PLN03192 634 DLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA---------DVDKANTDDDFSPTELRELLQK 701 (823)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC---------CCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999998776 9999999999999999998663 222222222 588877644433
No 52
>PHA02730 ankyrin-like protein; Provisional
Probab=99.76 E-value=8.5e-19 Score=167.45 Aligned_cols=184 Identities=13% Similarity=0.009 Sum_probs=135.7
Q ss_pred HHHHHHHHhCCCCCc-ccCCCCCcHHHHHHHhC---cHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHH
Q 020270 17 IDKVKALIGSGADVS-YFDSDGLTPLMHAAKLG---HANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG--HQEVFEVLL 90 (328)
Q Consensus 17 ~~~v~~LL~~gad~n-~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g--~~~~v~~Ll 90 (328)
...+++.+++.+++| .+|..|.||||+|+..| +.++|++||++||+++++|..|.||||+|+..+ +.+++++|+
T Consensus 20 ~~~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll 99 (672)
T PHA02730 20 YKKIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLI 99 (672)
T ss_pred HHHHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence 456788888877888 88899999999999997 599999999999999999999999999999977 799999999
Q ss_pred HcCCCh--hhhh----hHHHhhcc--CCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCCceee
Q 020270 91 NAGIQA--ELIL----GTIARAGN--KNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILN 162 (328)
Q Consensus 91 ~~g~~~--~~~~----~~l~~a~~--~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe 162 (328)
++|+++ +..+ .|++.++. .++.+.+++|++...+......+.. ....+.+|++.+......+..+.+++
T Consensus 100 ~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~---~~~~~~~~~yl~~~~~~~eIvklLi~ 176 (672)
T PHA02730 100 SSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYY---IHCLGLVDIYVTTPNPRPEVLLWLLK 176 (672)
T ss_pred hcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhh---ccccchhhhhHhcCCCchHHHHHHHH
Confidence 997755 4333 28887777 7778899999874443221110000 00134599999977777666677777
Q ss_pred ecccCC-cc----hhHHhccCCceEE-------eeccCHHHHHHHHHcCCCCC
Q 020270 163 IGFGMG-LV----DTAIQQYSPVTHT-------ILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 163 ~g~~~g-~~----~~~~~~~~~~~~~-------a~e~~~~~~~~L~~~g~~~~ 203 (328)
.|+... .. +......+|++|. ....+.+++++|+++|++.+
T Consensus 177 ~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN 229 (672)
T PHA02730 177 SECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIH 229 (672)
T ss_pred cCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCC
Confidence 777652 21 1112334555551 23378999999999998854
No 53
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=5.2e-19 Score=159.74 Aligned_cols=197 Identities=20% Similarity=0.254 Sum_probs=149.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Q 020270 6 EQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEV 85 (328)
Q Consensus 6 t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~ 85 (328)
-.+..||..|+.+-|..||..|+++|..+.+|.|+||-||...+.+||++|+++|++||+.|..|+||||.|+..||..+
T Consensus 42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i 121 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI 121 (527)
T ss_pred HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhccccc-------C-Ccc---------ccccchhhhhhccch
Q 020270 86 FEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFS-------E-GKL---------VDSDSKAIMMAWEKP 144 (328)
Q Consensus 86 v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~-------~-~~l---------~~~~~~~~~~~~~tp 144 (328)
+++|+++|++....+. |+..+......+++..-....... . ..+ -....+.....|.|.
T Consensus 122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~ 201 (527)
T KOG0505|consen 122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA 201 (527)
T ss_pred HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence 9999999999876655 333322211111111111000000 0 000 011222223336799
Q ss_pred HHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCC
Q 020270 145 LMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKN 204 (328)
Q Consensus 145 L~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~ 204 (328)
||.|+..+..+...-+++.|....+.+. ++++|+|.++..++.++.+.|+++|++...
T Consensus 202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~--dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~ 259 (527)
T KOG0505|consen 202 LHVAAANGYTEVAALLLQAGYSVNIKDY--DGWTPLHAAAHWGQEDACELLVEHGADMDA 259 (527)
T ss_pred HHHHHhhhHHHHHHHHHHhccCcccccc--cCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence 9999999997777777888877766554 778888877788999999999999976443
No 54
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-18 Score=145.25 Aligned_cols=99 Identities=27% Similarity=0.307 Sum_probs=95.0
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
-|.+|||+||+.|+..+|+.||..|+.+|..+....||||+|+.+||.++|+.|++..+|+|+.++.|.||||+||--|.
T Consensus 33 hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy 112 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY 112 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence 46789999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhh
Q 020270 83 QEVFEVLLNAGIQAELILG 101 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~ 101 (328)
..+.+-|+..|+.+++.++
T Consensus 113 dqiaedli~~ga~v~icnk 131 (448)
T KOG0195|consen 113 DQIAEDLISCGAAVNICNK 131 (448)
T ss_pred HHHHHHHHhccceeeeccc
Confidence 9999999999999988765
No 55
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.75 E-value=1.7e-18 Score=139.56 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=89.2
Q ss_pred chhHHHHHHHHcCCH---HHHHHHHhCCCCCcccCC-CCCcHHHHHHHhCcHHHHHHHHHc-CCCCCccCCCCCCHHHHH
Q 020270 3 KEGEQLCEAARNGDI---DKVKALIGSGADVSYFDS-DGLTPLMHAAKLGHANLVKTLLEA-GAPWNALSSSNLSAGDFA 77 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~---~~v~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A 77 (328)
+|.||||+|+..|+. +++++|+++|+++|.++. .|.||||+|+..|+.+++++|+++ |+++|.+|..|.||||+|
T Consensus 54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A 133 (154)
T PHA02736 54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133 (154)
T ss_pred CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence 578999999999987 468999999999999984 899999999999999999999984 999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCChh
Q 020270 78 MDSGHQEVFEVLLNAGIQAE 97 (328)
Q Consensus 78 ~~~g~~~~v~~Ll~~g~~~~ 97 (328)
+..|+.+++++|+++|++.+
T Consensus 134 ~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 134 CERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred HHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999865
No 56
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.75 E-value=1.7e-18 Score=139.76 Aligned_cols=167 Identities=22% Similarity=0.211 Sum_probs=138.2
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
+|.+++|.|+-+|+...+..+|.+|+..|..+..+++|+++++...+++.+..|.++ .+|..|+.|.|||.||+..||
T Consensus 95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~ 172 (296)
T KOG0502|consen 95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGH 172 (296)
T ss_pred hhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCc
Confidence 477889999999999999999999999999999999999999999999988887764 689999999999999999999
Q ss_pred HHHHHHHHHcCCChhhhhhHHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCCceee
Q 020270 83 QEVFEVLLNAGIQAELILGTIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILN 162 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe 162 (328)
.++|++|++.|+++++... .-+++|++|+..+.....+.+|+
T Consensus 173 i~vV~fLL~~GAdp~~lgk--------------------------------------~resALsLAt~ggytdiV~lLL~ 214 (296)
T KOG0502|consen 173 IPVVQFLLNSGADPDALGK--------------------------------------YRESALSLATRGGYTDIVELLLT 214 (296)
T ss_pred hHHHHHHHHcCCChhhhhh--------------------------------------hhhhhHhHHhcCChHHHHHHHHh
Confidence 9999999999999975322 11377777777666665666666
Q ss_pred ecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEeccc
Q 020270 163 IGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRW 213 (328)
Q Consensus 163 ~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w 213 (328)
.+.+.++.|. ++++|+.|++..+|.++++.|++.|++.. .....|.|
T Consensus 215 r~vdVNvyDw--NGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~ 261 (296)
T KOG0502|consen 215 REVDVNVYDW--NGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYW 261 (296)
T ss_pred cCCCcceecc--CCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCc
Confidence 6666666554 78899999888899999999999997643 33334555
No 57
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.74 E-value=4e-18 Score=170.32 Aligned_cols=188 Identities=17% Similarity=0.124 Sum_probs=135.0
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhC--CCCCcccCCCCCcHHH-HHHHhCcHHHHHHHHHcCCC-----------------
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGS--GADVSYFDSDGLTPLM-HAAKLGHANLVKTLLEAGAP----------------- 62 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~--gad~n~~d~~G~TpLh-~Aa~~g~~~~v~~Ll~~ga~----------------- 62 (328)
.+.++|+.||+.|+.+.|+.++++ +.++|..|..|.|||| .|+.+++.+++++|+++|+.
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~ 95 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVD 95 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHH
Confidence 456778888888888888888877 7778888888888888 77777788888888777731
Q ss_pred ---------------------CCc----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhh----------------h
Q 020270 63 ---------------------WNA----LSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELIL----------------G 101 (328)
Q Consensus 63 ---------------------~n~----~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------~ 101 (328)
++. .+..|.||||+|+..|+.+++++|+++|++++... +
T Consensus 96 ~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g 175 (743)
T TIGR00870 96 AVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG 175 (743)
T ss_pred HHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccccc
Confidence 001 12358999999999999999999999999987541 1
Q ss_pred --HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHh-----h----cCCCceeeecccC---
Q 020270 102 --TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAI-----C----SGGGHILNIGFGM--- 167 (328)
Q Consensus 102 --~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~-----~----~~~~~iLe~g~~~--- 167 (328)
|++.|+..++.+.+++|++.+. +.+..+..+.||||.|+..+. . .....+++.+...
T Consensus 176 ~tpL~~Aa~~~~~~iv~lLl~~ga---------din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~ 246 (743)
T TIGR00870 176 ESPLNAAACLGSPSIVALLSEDPA---------DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS 246 (743)
T ss_pred ccHHHHHHHhCCHHHHHHHhcCCc---------chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCh
Confidence 8999999999999998887442 455666677899999977641 0 1111223333321
Q ss_pred ----CcchhHHhccCCceEEeeccCHHHHHHHHHcCCC
Q 020270 168 ----GLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG 201 (328)
Q Consensus 168 ----g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~ 201 (328)
.+.+ .++.+|++.++..++.++++.|++.++.
T Consensus 247 ~el~~i~N--~~g~TPL~~A~~~g~~~l~~lLL~~~~~ 282 (743)
T TIGR00870 247 KELEVILN--HQGLTPLKLAAKEGRIVLFRLKLAIKYK 282 (743)
T ss_pred HhhhhhcC--CCCCCchhhhhhcCCccHHHHHHHHHHh
Confidence 1112 2456777777777999999999996644
No 58
>PHA02741 hypothetical protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=136.36 Aligned_cols=94 Identities=21% Similarity=0.213 Sum_probs=87.9
Q ss_pred chhHHHHHHHHcCC----HHHHHHHHhCCCCCcccCC-CCCcHHHHHHHhCcHHHHHHHHH-cCCCCCccCCCCCCHHHH
Q 020270 3 KEGEQLCEAARNGD----IDKVKALIGSGADVSYFDS-DGLTPLMHAAKLGHANLVKTLLE-AGAPWNALSSSNLSAGDF 76 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~----~~~v~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~ 76 (328)
.|.||||+|+..|+ .+++++|+++|+++|.++. .|.||||+|+..++.+++++|++ .|++++..|..|.||||+
T Consensus 59 ~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~ 138 (169)
T PHA02741 59 AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138 (169)
T ss_pred CCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHH
Confidence 57899999999999 5899999999999999985 89999999999999999999998 599999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCh
Q 020270 77 AMDSGHQEVFEVLLNAGIQA 96 (328)
Q Consensus 77 A~~~g~~~~v~~Ll~~g~~~ 96 (328)
|+..++.+++++|++.++..
T Consensus 139 A~~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 139 AIDNEDVAMMQILREIVATS 158 (169)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999876553
No 59
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.73 E-value=1.3e-18 Score=172.59 Aligned_cols=188 Identities=23% Similarity=0.244 Sum_probs=110.1
Q ss_pred chhHHHHHHHHcC-CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 3 KEGEQLCEAARNG-DIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 3 ~~~t~L~~Aa~~g-~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.|.||+|.|+..| ..+....+++.|+++|.....|.||||.|+..|+.++++.|++.++..+.....|.|++|+|...+
T Consensus 439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~ 518 (1143)
T KOG4177|consen 439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED 518 (1143)
T ss_pred cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence 4556666666666 555666666666666666666666666666666666666666666555555555666666666666
Q ss_pred CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCC
Q 020270 82 HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGG 157 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~ 157 (328)
+..+++.++++|++++..++ |||.|+..++...++||++++. +.+..+..|.||||.|+..+.....
T Consensus 519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA---------dv~ak~~~G~TPLH~Aa~~G~~~i~ 589 (1143)
T KOG4177|consen 519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA---------DVNAKDKLGYTPLHQAAQQGHNDIA 589 (1143)
T ss_pred hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCc---------cccccCCCCCChhhHHHHcChHHHH
Confidence 66666666666666666555 6777777777777777766543 2223334455777777666654434
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG 201 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~ 201 (328)
.-+++.|..++..+. .+.+|++.++..++.++++.|...+..
T Consensus 590 ~LLlk~GA~vna~d~--~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 590 ELLLKHGASVNAADL--DGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred HHHHHcCCCCCcccc--cCcchhHHHHHhcccchhhHHHhccCc
Confidence 444444444443331 334444333333777777777766654
No 60
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.71 E-value=3.1e-17 Score=127.81 Aligned_cols=98 Identities=32% Similarity=0.364 Sum_probs=86.8
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
++-||||.|+.+|+.++|+.||..||+++.+...|+||||-||.=++.+++-.||++|||+|+......||||+|+...+
T Consensus 96 D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn 175 (228)
T KOG0512|consen 96 DEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRN 175 (228)
T ss_pred ccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred H-HHHHHHHH-cCCChhhhh
Q 020270 83 Q-EVFEVLLN-AGIQAELIL 100 (328)
Q Consensus 83 ~-~~v~~Ll~-~g~~~~~~~ 100 (328)
. ..+.+|+. .++++...+
T Consensus 176 ~r~t~~~Ll~dryi~pg~~n 195 (228)
T KOG0512|consen 176 SRDTLELLLHDRYIHPGLKN 195 (228)
T ss_pred hHHHHHHHhhccccChhhhc
Confidence 4 56777654 555554433
No 61
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.71 E-value=4.5e-17 Score=113.63 Aligned_cols=93 Identities=26% Similarity=0.389 Sum_probs=86.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQE 84 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~ 84 (328)
...+.|+.++|.++.|+..+..|-++|..- .|+||||+|+-.|.++++++|+..||+++.+|+.|-|||.-|+..||.+
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~ 81 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD 81 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence 356889999999999999999998887655 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhh
Q 020270 85 VFEVLLNAGIQAEL 98 (328)
Q Consensus 85 ~v~~Ll~~g~~~~~ 98 (328)
||++|++.|++...
T Consensus 82 cVklLL~~GAdrt~ 95 (117)
T KOG4214|consen 82 CVKLLLQNGADRTI 95 (117)
T ss_pred HHHHHHHcCcccce
Confidence 99999999999754
No 62
>PHA02792 ankyrin-like protein; Provisional
Probab=99.69 E-value=3.5e-17 Score=154.95 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=122.9
Q ss_pred cchhHHHHHHHHcC-------CHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhC--c-----------------------
Q 020270 2 EKEGEQLCEAARNG-------DIDKVKALIGSGADVSYFDSDGLTPLMHAAKLG--H----------------------- 49 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g-------~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~----------------------- 49 (328)
+.|.||||+|+.++ +.++++.||++|++++..|..|.||||+|+.+. .
T Consensus 173 ~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~ 252 (631)
T PHA02792 173 RMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSN 252 (631)
T ss_pred CCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHH
Confidence 35899999999999 899999999999999999999999999999665 2
Q ss_pred --------------------------------------------------------------------HHHHHHHHHcCC
Q 020270 50 --------------------------------------------------------------------ANLVKTLLEAGA 61 (328)
Q Consensus 50 --------------------------------------------------------------------~~~v~~Ll~~ga 61 (328)
.+++++|+++|+
T Consensus 253 y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga 332 (631)
T PHA02792 253 YLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGA 332 (631)
T ss_pred HHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCC
Confidence 566777777777
Q ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh------HHHhhccCCCCCc---chhhhhcccccCCccccc
Q 020270 62 PWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG------TIARAGNKNSNSN---GDYLEDRVSFSEGKLVDS 132 (328)
Q Consensus 62 ~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~------~l~~a~~~~~~~~---~~~L~~~~~~~~~~l~~~ 132 (328)
+++. .....+++.|+..|+.+++++|+++|++++..+. ||+.|......+. +++|++.+ +
T Consensus 333 ~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G---------A 401 (631)
T PHA02792 333 TLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI---------D 401 (631)
T ss_pred cccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC---------C
Confidence 6541 2244567777777888888888888887766542 5665544433322 33333322 2
Q ss_pred cchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEee----------ccCHHHHHHHHHcCCC
Q 020270 133 DSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTIL----------EAHPEVYERMLRTGWG 201 (328)
Q Consensus 133 ~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~----------e~~~~~~~~L~~~g~~ 201 (328)
+.+..+..|.||||.|+..+..+....+++.|.+....+. .+.+|++.++. +.+.++++.|++.|.+
T Consensus 402 DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~--~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~ 478 (631)
T PHA02792 402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK--YGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT 478 (631)
T ss_pred ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence 3445555667888888665554444445555555444332 34444444332 1224567777777744
No 63
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=140.75 Aligned_cols=91 Identities=22% Similarity=0.230 Sum_probs=84.5
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFD-SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.|.||||.|+..|+.+++++|+++|||+|.++ ..|.||||+|+..|+.+++++|+++||++|.+|..|.||||+|+..+
T Consensus 69 ~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~ 148 (300)
T PHA02884 69 SKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMIC 148 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence 68999999999999999999999999999864 57999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcC
Q 020270 82 HQEVFEVLLNAG 93 (328)
Q Consensus 82 ~~~~v~~Ll~~g 93 (328)
+.+++.++...+
T Consensus 149 ~~~~~~~~~~~~ 160 (300)
T PHA02884 149 NNFLAFMICDNE 160 (300)
T ss_pred ChhHHHHhcCCc
Confidence 998877665443
No 64
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.68 E-value=8.9e-17 Score=138.85 Aligned_cols=89 Identities=36% Similarity=0.490 Sum_probs=70.5
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~~g 81 (328)
-|.|+|+.|+..|+.++|+.||..|||+|.+|.+|.|+||+||++||.|+|++||.. +||+...|.+|.|+|.+|...|
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag 418 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG 418 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence 367888888888888888888888888888888888888888888888888888875 7777778888888888888888
Q ss_pred CHHHHHHHHH
Q 020270 82 HQEVFEVLLN 91 (328)
Q Consensus 82 ~~~~v~~Ll~ 91 (328)
|.||.-+|..
T Consensus 419 h~eIa~mlYa 428 (452)
T KOG0514|consen 419 HREIAVMLYA 428 (452)
T ss_pred chHHHHHHHH
Confidence 8887766654
No 65
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.68 E-value=3.6e-16 Score=120.32 Aligned_cols=117 Identities=35% Similarity=0.405 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
.+|.||||.|+..|+.++++.|+++|++.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 84 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG 84 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 36889999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhh
Q 020270 82 HQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYL 118 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L 118 (328)
+.+++++|++.+.+.+..+. |++.+...+..+.+++|
T Consensus 85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L 125 (126)
T cd00204 85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125 (126)
T ss_pred cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence 99999999999877665544 77777776655555544
No 66
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=7.1e-17 Score=146.05 Aligned_cols=121 Identities=27% Similarity=0.323 Sum_probs=110.9
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCC------------------
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWN------------------ 64 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n------------------ 64 (328)
+|.|+||.+|...+.++|++|+++|++||.+|..|+||||.|+..||+.++++|+++||++.
T Consensus 72 DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~ 151 (527)
T KOG0505|consen 72 DGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT 151 (527)
T ss_pred ccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence 57899999999999999999999999999999999999999999999999999999999842
Q ss_pred -----------------------------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh--
Q 020270 65 -----------------------------------------ALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG-- 101 (328)
Q Consensus 65 -----------------------------------------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~-- 101 (328)
..+..|-|+||.|+..|..++.++|+++|.++++.+.
T Consensus 152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dg 231 (527)
T KOG0505|consen 152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDG 231 (527)
T ss_pred hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccC
Confidence 2233578999999999999999999999999999887
Q ss_pred --HHHhhccCCCCCcchhhhhccc
Q 020270 102 --TIARAGNKNSNSNGDYLEDRVS 123 (328)
Q Consensus 102 --~l~~a~~~~~~~~~~~L~~~~~ 123 (328)
|||.|+-++..+..+.|...+.
T Consensus 232 WtPlHAAA~Wg~~~~~elL~~~ga 255 (527)
T KOG0505|consen 232 WTPLHAAAHWGQEDACELLVEHGA 255 (527)
T ss_pred CCcccHHHHhhhHhHHHHHHHhhc
Confidence 9999999999999998887653
No 67
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.66 E-value=7.3e-17 Score=150.99 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=152.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHhC-----C--------CCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCC
Q 020270 5 GEQLCEAARNGDIDKVKALIGS-----G--------ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNL 71 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~-----g--------ad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~ 71 (328)
.+-|..|++.|+.+.+..||++ | ..+|.+|.+|.|+||.||.+|+.+++++|+++.+-++..|..|.
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~ 83 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI 83 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence 4678899999999999999984 1 24688899999999999999999999999999999999999999
Q ss_pred CHHHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHH
Q 020270 72 SAGDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLME 147 (328)
Q Consensus 72 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~ 147 (328)
+|||+|+..|+.+++++|+.++..+|...- |+|.++++++.+++.||++.+. +.-.++.+++|+|-.
T Consensus 84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~a---------dp~i~nns~~t~ldl 154 (854)
T KOG0507|consen 84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNA---------DPFIRNNSKETVLDL 154 (854)
T ss_pred ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCC---------CccccCcccccHHHH
Confidence 999999999999999999999866665544 9999999999999999998653 334445566799999
Q ss_pred HHHHHhhcCCCceeeeccc------CCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC
Q 020270 148 AHAKAICSGGGHILNIGFG------MGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK 203 (328)
Q Consensus 148 a~~~~~~~~~~~iLe~g~~------~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~ 203 (328)
|+.-+..+....++..-+. .|-..+......|+|.++.++|.++++.|++.|.+.+
T Consensus 155 A~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din 216 (854)
T KOG0507|consen 155 ASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN 216 (854)
T ss_pred HHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc
Confidence 9877765444333333211 1111122345567777788899999999999997754
No 68
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.66 E-value=2.4e-17 Score=138.32 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=91.4
Q ss_pred HHHHHcCCHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 020270 9 CEAARNGDIDKVKALIG-SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFE 87 (328)
Q Consensus 9 ~~Aa~~g~~~~v~~LL~-~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~ 87 (328)
+-=|+.|+.--|++-|+ ..-|.|.-|+.|.+||||||+.||..+|+.|+++|+.+|..+.-..||||+|+..||.++|+
T Consensus 5 f~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivq 84 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQ 84 (448)
T ss_pred hhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHH
Confidence 33466676666666666 44689999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHcCCChhhhhh----HHHhhccCCCCCcchhhhh
Q 020270 88 VLLNAGIQAELILG----TIARAGNKNSNSNGDYLED 120 (328)
Q Consensus 88 ~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~ 120 (328)
.|++..+++|..+. |||.||-.|...+.+-|++
T Consensus 85 kll~~kadvnavnehgntplhyacfwgydqiaedli~ 121 (448)
T KOG0195|consen 85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLIS 121 (448)
T ss_pred HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHh
Confidence 99999999886554 5555555555555544444
No 69
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.65 E-value=1.7e-16 Score=104.53 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=33.6
Q ss_pred HHhCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 020270 23 LIGSG-ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFA 77 (328)
Q Consensus 23 LL~~g-ad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A 77 (328)
||++| +++|.+|..|.||||+||..|+.++|++|++.|++++.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 67888 89999999999999999999999999999999999999999999999997
No 70
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.62 E-value=6.3e-16 Score=154.58 Aligned_cols=119 Identities=19% Similarity=0.092 Sum_probs=103.3
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCC--------------CCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDS--------------DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSS 68 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~--------------~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~ 68 (328)
.|.||||.||..|+.++|+.||++|+|++.++. .|.||||+|+..|+.+++++|+++|+++|.+|.
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~ 206 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADS 206 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence 588999999999999999999999999997642 589999999999999999999999999999999
Q ss_pred CCCCHHHHHHHcC---------CHHHHHHHHHcCCCh-------hhhhh----HHHhhccCCCCCcchhhhhc
Q 020270 69 SNLSAGDFAMDSG---------HQEVFEVLLNAGIQA-------ELILG----TIARAGNKNSNSNGDYLEDR 121 (328)
Q Consensus 69 ~g~tpL~~A~~~g---------~~~~v~~Ll~~g~~~-------~~~~~----~l~~a~~~~~~~~~~~L~~~ 121 (328)
.|+||||+|+..+ ...+.+++++.+++. ++.+. |++.|+..++.+.+++|++.
T Consensus 207 ~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 207 LGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 9999999999987 334667777765553 33333 99999999999999998873
No 71
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.61 E-value=2.8e-15 Score=147.00 Aligned_cols=95 Identities=34% Similarity=0.456 Sum_probs=89.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQE 84 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~ 84 (328)
.++|+.||..|+.+.|+.||++|+++|.+|..|.||||+||..|+.++|++|+++|+++|.+|..|.||||+|+..|+.+
T Consensus 83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-------CCChhhh
Q 020270 85 VFEVLLNA-------GIQAELI 99 (328)
Q Consensus 85 ~v~~Ll~~-------g~~~~~~ 99 (328)
++++|+++ |++.+..
T Consensus 163 iv~~Ll~~~~~~~~~ga~~~~~ 184 (664)
T PTZ00322 163 VVQLLSRHSQCHFELGANAKPD 184 (664)
T ss_pred HHHHHHhCCCcccccCCCCCcc
Confidence 99999998 6665443
No 72
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.60 E-value=2.5e-15 Score=109.31 Aligned_cols=64 Identities=41% Similarity=0.504 Sum_probs=59.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d 67 (328)
|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 5799999999999999999999999999999999999999999999999999999999999875
No 73
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.60 E-value=2.1e-16 Score=152.60 Aligned_cols=189 Identities=25% Similarity=0.261 Sum_probs=153.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL-SSSNLSAGDFAMDSGH 82 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpL~~A~~~g~ 82 (328)
-.|+|-.||..|+.|.|++|+..|+++..+|..|.+||..|+..||..+|+.|+.+.+++.+. |+.+.|+|.+||..|.
T Consensus 757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr 836 (2131)
T KOG4369|consen 757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR 836 (2131)
T ss_pred ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence 358999999999999999999999999999999999999999999999999999999999985 7789999999999999
Q ss_pred HHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCC
Q 020270 83 QEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGG 158 (328)
Q Consensus 83 ~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~ 158 (328)
.++|++||.+|++-+.++- |+..|...+..++++.|++.+..- +.......+-.|||+|...+.....+
T Consensus 837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseI-------nSrtgSklgisPLmlatmngh~~at~ 909 (2131)
T KOG4369|consen 837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEI-------NSRTGSKLGISPLMLATMNGHQAATL 909 (2131)
T ss_pred chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccc-------ccccccccCcchhhhhhhccccHHHH
Confidence 9999999999998654443 999999999999999999876321 11122233459999999888887778
Q ss_pred ceeeecccCCc-chhHHhccCCceEEeeccCHHHHHHHHHcCCC
Q 020270 159 HILNIGFGMGL-VDTAIQQYSPVTHTILEAHPEVYERMLRTGWG 201 (328)
Q Consensus 159 ~iLe~g~~~g~-~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~ 201 (328)
.+|+-|.+++. +.+ +.++.+-.+.-.++++++.+|+...++
T Consensus 910 ~ll~~gsdiNaqIeT--NrnTaltla~fqgr~evv~lLLa~~an 951 (2131)
T KOG4369|consen 910 SLLQPGSDINAQIET--NRNTALTLALFQGRPEVVFLLLAAQAN 951 (2131)
T ss_pred HHhcccchhcccccc--ccccceeeccccCcchHHHHHHHHhhh
Confidence 88888888765 221 223333333334888888888876554
No 74
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.59 E-value=2.3e-15 Score=98.54 Aligned_cols=53 Identities=47% Similarity=0.616 Sum_probs=23.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLL 57 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll 57 (328)
.||||+||+.|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++||
T Consensus 2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 44555555555555555555555555555555555555555555555555443
No 75
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.59 E-value=3.8e-15 Score=97.50 Aligned_cols=54 Identities=37% Similarity=0.530 Sum_probs=46.8
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 020270 37 GLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLL 90 (328)
Q Consensus 37 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll 90 (328)
|+||||+||+.|+.+++++|+++|+++|.+|.+|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999999999999986
No 76
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.57 E-value=3.2e-15 Score=141.62 Aligned_cols=119 Identities=24% Similarity=0.212 Sum_probs=108.8
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccC--------C---------------CCCcHHHHHHHhCcHHHHHHHHHc
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFD--------S---------------DGLTPLMHAAKLGHANLVKTLLEA 59 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d--------~---------------~G~TpLh~Aa~~g~~~~v~~Ll~~ 59 (328)
.|.||||+|+.+.+.++|++||++|||++++- + .|..||.+||+-++.+++++|+++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~ 262 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH 262 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence 48899999999999999999999999998762 1 368899999999999999999999
Q ss_pred CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--hhhhhh----HHHhhccCCCCCcchhhhhc
Q 020270 60 GAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQ--AELILG----TIARAGNKNSNSNGDYLEDR 121 (328)
Q Consensus 60 ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~--~~~~~~----~l~~a~~~~~~~~~~~L~~~ 121 (328)
|||+|++|..|+|.||+.+..-..+++.+++++|++ ..+.++ ||..|+..|..++.+.+++.
T Consensus 263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 999999999999999999999889999999999999 555555 99999999999988888887
No 77
>PHA02792 ankyrin-like protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=137.14 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=93.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC--CcHHHHHHHhCcH---HHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDG--LTPLMHAAKLGHA---NLVKTLLEAGAPWNALSSSNLSAGDFAM 78 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G--~TpLh~Aa~~g~~---~~v~~Ll~~ga~~n~~d~~g~tpL~~A~ 78 (328)
....++.||..|+.++|++|+++|||+|.+|..| .||||+|+..... +++++|+++||++|.+|..|.||||+|+
T Consensus 339 ~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa 418 (631)
T PHA02792 339 HINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI 418 (631)
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH
Confidence 3456899999999999999999999999999775 6999998776654 4689999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCChhhhhh----HHHhhcc
Q 020270 79 DSGHQEVFEVLLNAGIQAELILG----TIARAGN 108 (328)
Q Consensus 79 ~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~ 108 (328)
..++.+++++|+++|++++..+. |++.|..
T Consensus 419 ~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 419 ESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999987766 8887754
No 78
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=121.57 Aligned_cols=120 Identities=28% Similarity=0.320 Sum_probs=103.9
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHc
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL-SSSNLSAGDFAMDS 80 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~-d~~g~tpL~~A~~~ 80 (328)
+...+||..|.-.|+.+....||+.--.+|.+|++|+|||..|+..|+.++|++||+.|||+|.. +..++||||.|+.+
T Consensus 10 d~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS 89 (396)
T KOG1710|consen 10 DAPKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS 89 (396)
T ss_pred cchhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence 34578999999999999999999875568999999999999999999999999999999999984 56799999999999
Q ss_pred CCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhc
Q 020270 81 GHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDR 121 (328)
Q Consensus 81 g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~ 121 (328)
|+.++.++|++.|++....++ +-..|+--|+-+++..+.+.
T Consensus 90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 999999999999999988777 55566666766666555443
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.55 E-value=2.6e-14 Score=121.52 Aligned_cols=119 Identities=34% Similarity=0.345 Sum_probs=109.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCc-----HHHHHHHHHcCC---CCCccCCCCCCHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGH-----ANLVKTLLEAGA---PWNALSSSNLSAGD 75 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~n~~d~~g~tpL~ 75 (328)
+.+++|.|+..++.+.+++++..|++++.++..|.||||+|+..++ .+++++|++.|+ ..+.+|..|.||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~ 152 (235)
T COG0666 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152 (235)
T ss_pred ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence 6789999999999999999999999999999999999999999999 999999999999 66666999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcc
Q 020270 76 FAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRV 122 (328)
Q Consensus 76 ~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~ 122 (328)
+|+..|+.+++++|++.|++++..+. +++.++..++...+..+....
T Consensus 153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 99999999999999999999887654 888999888888888887743
No 80
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.5e-14 Score=130.34 Aligned_cols=90 Identities=30% Similarity=0.364 Sum_probs=86.1
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 020270 7 QLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVF 86 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v 86 (328)
-|+-|+..|-+++|+..+..=-|+...++.|.||||-|++.||.+||++|++.|+++|+.|.+||||||.|++.++..++
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c 632 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC 632 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence 37789999999999999998779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCh
Q 020270 87 EVLLNAGIQA 96 (328)
Q Consensus 87 ~~Ll~~g~~~ 96 (328)
+.|++.|+-+
T Consensus 633 kqLVe~Gaav 642 (752)
T KOG0515|consen 633 KQLVESGAAV 642 (752)
T ss_pred HHHHhccceE
Confidence 9999999876
No 81
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.51 E-value=3.6e-14 Score=99.20 Aligned_cols=75 Identities=29% Similarity=0.348 Sum_probs=69.7
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHH
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFA 77 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A 77 (328)
.+++|||+||-.|+.+++++|+..||+++.+|..|.|||..|+..||.++|++||+.||+-....-+|.+.+..+
T Consensus 33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT 107 (117)
T ss_pred CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence 578999999999999999999999999999999999999999999999999999999999888877887766544
No 82
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.47 E-value=1.6e-13 Score=115.47 Aligned_cols=90 Identities=32% Similarity=0.399 Sum_probs=84.2
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSY-FDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
+.|+|+|..|+..|+.+.|++||+.|+|+|. ++..++||||+||-+|+.++.++|++.|+.....+.-|+|+-.+|+--
T Consensus 43 ~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFV 122 (396)
T KOG1710|consen 43 PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFV 122 (396)
T ss_pred CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHh
Confidence 4689999999999999999999999999986 457899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 020270 81 GHQEVFEVLLN 91 (328)
Q Consensus 81 g~~~~v~~Ll~ 91 (328)
||.+||..+-+
T Consensus 123 G~H~CV~iINN 133 (396)
T KOG1710|consen 123 GHHECVAIINN 133 (396)
T ss_pred cchHHHHHHhc
Confidence 99999987644
No 83
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.46 E-value=6.9e-15 Score=142.30 Aligned_cols=198 Identities=21% Similarity=0.176 Sum_probs=140.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYF-DSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
++|.+||.+|+-.||..+|+.||++.++++.+ |.++.|+|.+||..|+.++|++||.+|++-..++-..+|||.+|...
T Consensus 788 kkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg 867 (2131)
T KOG4369|consen 788 KKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG 867 (2131)
T ss_pred cccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc
Confidence 46788888888888988889888888888765 45788888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHcCCChhhhhh------HHHhhccCCCCCcchhhhhcccccC-----------------------Ccccc
Q 020270 81 GHQEVFEVLLNAGIQAELILG------TIARAGNKNSNSNGDYLEDRVSFSE-----------------------GKLVD 131 (328)
Q Consensus 81 g~~~~v~~Ll~~g~~~~~~~~------~l~~a~~~~~~~~~~~L~~~~~~~~-----------------------~~l~~ 131 (328)
|..++|.+|+.+|+.++-..+ ||..|...++......|+..+.--. ..|++
T Consensus 868 gy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa 947 (2131)
T KOG4369|consen 868 GYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA 947 (2131)
T ss_pred chHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH
Confidence 888888888888887776655 8888888877766666666542100 00112
Q ss_pred c--cchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeec-cCHHHHHHHHHcCC
Q 020270 132 S--DSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPEVYERMLRTGW 200 (328)
Q Consensus 132 ~--~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~~~~~L~~~g~ 200 (328)
. +....-..|-||||.++.-+..+.+.-++..|.++...-.. +...+.+....+ ||...++.|+...+
T Consensus 948 ~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp-~T~dtalti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen 948 AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP-NTWDTALTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred HhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC-CcCCccceeecCCCchhhhHHhhCCcc
Confidence 2 22233345568888877767767777777777777662211 233344444444 88888888876443
No 84
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.42 E-value=6.2e-13 Score=113.01 Aligned_cols=92 Identities=40% Similarity=0.472 Sum_probs=87.6
Q ss_pred cchhHHHHHHHHcCC-----HHHHHHHHhCCC---CCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCH
Q 020270 2 EKEGEQLCEAARNGD-----IDKVKALIGSGA---DVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSA 73 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~-----~~~v~~LL~~ga---d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tp 73 (328)
..|.||||+|+..|+ .++++.||+.|+ +.+.+|..|.||||+|+..|+.+++++|++.|++++..+..|.|+
T Consensus 104 ~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~ 183 (235)
T COG0666 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183 (235)
T ss_pred CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcc
Confidence 368899999999999 999999999999 567779999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcC
Q 020270 74 GDFAMDSGHQEVFEVLLNAG 93 (328)
Q Consensus 74 L~~A~~~g~~~~v~~Ll~~g 93 (328)
++.|+..++.+++..+++.+
T Consensus 184 l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 184 LDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred hhhhcccchHHHHHHHHhcC
Confidence 99999999999999999976
No 85
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=3.1e-13 Score=122.06 Aligned_cols=90 Identities=32% Similarity=0.352 Sum_probs=80.8
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccC-CCCCCHHHHHH--
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALS-SSNLSAGDFAM-- 78 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d-~~g~tpL~~A~-- 78 (328)
++|.|+||-|+..||.++|++||+.|+++|..|++||||||+||..+++.+++.|+++||-+-+.. .++.||..-+-
T Consensus 581 dEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~ 660 (752)
T KOG0515|consen 581 DEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEM 660 (752)
T ss_pred ccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchh
Confidence 589999999999999999999999999999999999999999999999999999999999887754 45788887643
Q ss_pred HcCCHHHHHHHHH
Q 020270 79 DSGHQEVFEVLLN 91 (328)
Q Consensus 79 ~~g~~~~v~~Ll~ 91 (328)
..|...|.++|-.
T Consensus 661 eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 661 EEGYDQCSQYLYG 673 (752)
T ss_pred hhhHHHHHHHHHH
Confidence 5688899999865
No 86
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.40 E-value=2.3e-12 Score=98.89 Aligned_cols=88 Identities=41% Similarity=0.523 Sum_probs=84.2
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
.|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+..++.+++++|+++|.+++..+..|.||++.|...++
T Consensus 39 ~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~ 118 (126)
T cd00204 39 DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118 (126)
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 020270 83 QEVFEVLL 90 (328)
Q Consensus 83 ~~~v~~Ll 90 (328)
.+++++|+
T Consensus 119 ~~~~~~Ll 126 (126)
T cd00204 119 LEVVKLLL 126 (126)
T ss_pred HHHHHHhC
Confidence 99999874
No 87
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.30 E-value=2.4e-12 Score=84.60 Aligned_cols=43 Identities=40% Similarity=0.447 Sum_probs=30.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHH
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHA 44 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~A 44 (328)
..|.||||+||..|+.++|++||+.|+|++.+|..|+||||+|
T Consensus 14 ~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 14 KYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 3688999999999999999999999999999999999999997
No 88
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.24 E-value=1.2e-11 Score=121.56 Aligned_cols=108 Identities=21% Similarity=0.199 Sum_probs=89.5
Q ss_pred cHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh----HHHhhccCCCCCc
Q 020270 39 TPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG----TIARAGNKNSNSN 114 (328)
Q Consensus 39 TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~ 114 (328)
++||.|+..|+.++++.|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+. ||+.|+..++.++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i 163 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence 358899999999999999999999999999999999999999999999999999999988776 9999999999999
Q ss_pred chhhhhcccccCCccccccchhhhhhccchHHHH
Q 020270 115 GDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEA 148 (328)
Q Consensus 115 ~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a 148 (328)
+++|+...... ...+.+.+.....|.+|+..+
T Consensus 164 v~~Ll~~~~~~--~~~ga~~~~~~~~g~~~~~~~ 195 (664)
T PTZ00322 164 VQLLSRHSQCH--FELGANAKPDSFTGKPPSLED 195 (664)
T ss_pred HHHHHhCCCcc--cccCCCCCccccCCCCccchh
Confidence 99999864332 112233334444455666554
No 89
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.23 E-value=2.9e-11 Score=115.16 Aligned_cols=90 Identities=26% Similarity=0.238 Sum_probs=86.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAP--WNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~g~tpL~~A~~~g 81 (328)
|..||-.||..++.+++++|+++|||+|++|+.|.|.||..+.+-..+|-.+++++|++ ...+|++|.|||.+|+..|
T Consensus 240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG 319 (782)
T KOG3676|consen 240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG 319 (782)
T ss_pred ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence 67899999999999999999999999999999999999999999999999999999999 8888999999999999999
Q ss_pred CHHHHHHHHHcC
Q 020270 82 HQEVFEVLLNAG 93 (328)
Q Consensus 82 ~~~~v~~Ll~~g 93 (328)
..++.+.+++..
T Consensus 320 k~emf~~ile~~ 331 (782)
T KOG3676|consen 320 KKEMFQHILERR 331 (782)
T ss_pred hHHHHHHHHHhh
Confidence 999999999873
No 90
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.22 E-value=4.7e-11 Score=107.34 Aligned_cols=90 Identities=32% Similarity=0.447 Sum_probs=84.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDS-DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
-+..||..++.|++++.-.||..||++|+-+. .|.||||.|++.|+..-+++|+=.|||+++.|.+|.||+.+|-..||
T Consensus 133 LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH 212 (669)
T KOG0818|consen 133 LSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH 212 (669)
T ss_pred HHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence 45689999999999999999999999999885 69999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 020270 83 QEVFEVLLNAG 93 (328)
Q Consensus 83 ~~~v~~Ll~~g 93 (328)
-++.+.|++.-
T Consensus 213 ~~laeRl~e~~ 223 (669)
T KOG0818|consen 213 HELAERLVEIQ 223 (669)
T ss_pred hHHHHHHHHHH
Confidence 99998887743
No 91
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=99.18 E-value=2.6e-11 Score=108.47 Aligned_cols=91 Identities=30% Similarity=0.268 Sum_probs=85.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA-GAPWNALSSSNLSAGDFAMDSGH 82 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL~~A~~~g~ 82 (328)
+.-++++||..|++..++.+.-.|.|++.+|-+.+|+||.||..|+++++++|++. +.+++.+|+.|+|||.-|...+|
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h 585 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH 585 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence 44578999999999999999999999999999999999999999999999999996 89999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 020270 83 QEVFEVLLNAGI 94 (328)
Q Consensus 83 ~~~v~~Ll~~g~ 94 (328)
.+++++|-+.-.
T Consensus 586 ~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 586 KEVVKLLEEAQY 597 (622)
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
No 92
>PF13606 Ank_3: Ankyrin repeat
Probab=99.08 E-value=1.7e-10 Score=65.10 Aligned_cols=30 Identities=53% Similarity=0.630 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHHcCCCCCc
Q 020270 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNA 65 (328)
Q Consensus 36 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~ 65 (328)
+|+||||+||+.|+.++|++|+++|+++|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 367777777777777777777777777763
No 93
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.07 E-value=4e-10 Score=103.18 Aligned_cols=92 Identities=30% Similarity=0.344 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhCCCC--Ccc--cCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 6 EQLCEAARNGDIDKVKALIGSGAD--VSY--FDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 6 t~L~~Aa~~g~~~~v~~LL~~gad--~n~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
..|..|....++..+-+||.||.. +|. .+.+|+|+||+||+.|++...++|+-+|+|+.++|..|+|||.+|-+.|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 468889999999999999999853 332 3467899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCChh
Q 020270 82 HQEVFEVLLNAGIQAE 97 (328)
Q Consensus 82 ~~~~v~~Ll~~g~~~~ 97 (328)
..+|+.+|+++|+-.+
T Consensus 706 sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 706 SQECIDVLLQYGCPDE 721 (749)
T ss_pred cHHHHHHHHHcCCCcc
Confidence 9999999999998764
No 94
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=99.00 E-value=6.3e-10 Score=64.53 Aligned_cols=32 Identities=53% Similarity=0.684 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHHcCCCCCccC
Q 020270 36 DGLTPLMHAAKLGHANLVKTLLEAGAPWNALS 67 (328)
Q Consensus 36 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d 67 (328)
+|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 36777777777777777777777777777765
No 95
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.95 E-value=5.5e-10 Score=106.26 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=57.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDS-DGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 79 (328)
|+|+||+|+..|..+++++||.+|+|++.+|. .|+||||-|...|+++++-+||.+|+.....|++|.+||..-++
T Consensus 52 GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 52 GRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred ccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence 66777777777777777777777777777774 57777777777777777777777777777777777777776665
No 96
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.89 E-value=6.5e-10 Score=84.94 Aligned_cols=75 Identities=25% Similarity=0.560 Sum_probs=57.0
Q ss_pred CCCeeEEecccchhccCC-CCCCEEEEecC-----ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHH
Q 020270 203 KNNVKIIFGRWQDNLSQL-ESYDGIFFDTY-----GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLV 276 (328)
Q Consensus 203 ~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f-----~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~ 276 (328)
...+++..|+..+.+..+ ..+|+||+|+| |++|+. ++|+.+.+++++||++++|+.-|.+
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~--e~~~~l~~~~~~~~~l~Tys~a~~V------------ 95 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSE--ELFKKLARLSKPGGTLATYSSAGAV------------ 95 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSH--HHHHHHHHHEEEEEEEEES--BHHH------------
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCH--HHHHHHHHHhCCCcEEEEeechHHH------------
Confidence 345666777777766665 57999999999 699999 9999999999999999977765555
Q ss_pred HHHHHhcCCeEEEEE
Q 020270 277 SLELENLGFSMQLIP 291 (328)
Q Consensus 277 ~~~l~~~G~~~~~~~ 291 (328)
++.|+++||.|+-.+
T Consensus 96 r~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 96 RRALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHHHCTEEEEEEE
T ss_pred HHHHHHcCCEEEEcC
Confidence 555999999987444
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=98.89 E-value=1.7e-09 Score=60.94 Aligned_cols=30 Identities=43% Similarity=0.532 Sum_probs=28.2
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSY 32 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~ 32 (328)
+|.||||+||+.|+.++|++||++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 478999999999999999999999999984
No 98
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=85.80 Aligned_cols=144 Identities=26% Similarity=0.373 Sum_probs=117.3
Q ss_pred hccchHHHHHHHHhh---cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC---CCeeEEeccc
Q 020270 140 AWEKPLMEAHAKAIC---SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK---NNVKIIFGRW 213 (328)
Q Consensus 140 ~~~tpL~~a~~~~~~---~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~---~~~~~~~g~w 213 (328)
.+..|+-.+.++... ..+.++|+...|.|...-..-.....+...+|.+|.++++..-+.|... ..++++.|+.
T Consensus 115 ~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~ 194 (287)
T COG2521 115 KGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA 194 (287)
T ss_pred cCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH
Confidence 466888887666544 3478899999998885543344556688889999999998888888753 4678999998
Q ss_pred chhccCC--CCCCEEEEecC-----ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 214 QDNLSQL--ESYDGIFFDTY-----GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 214 ~~~~~~~--~~fD~i~~d~f-----~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
.+++..+ ++||+|..|+- .+.|+. +|+++++++|+|||++--|.|-.+.+-.+-|++..++++ |+++||.
T Consensus 195 ~e~V~~~~D~sfDaIiHDPPRfS~AgeLYse--efY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~R-Lr~vGF~ 271 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPPRFSLAGELYSE--EFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAER-LRRVGFE 271 (287)
T ss_pred HHHHhcCCccccceEeeCCCccchhhhHhHH--HHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHH-HHhcCce
Confidence 8877766 67999999986 578888 999999999999999999999988888888888887765 8999998
No 99
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.87 E-value=4.5e-09 Score=96.30 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=86.6
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHH
Q 020270 7 QLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAP--WNALSSSNLSAGDFAMDSGHQE 84 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~--~n~~d~~g~tpL~~A~~~g~~~ 84 (328)
.|..|+..+++-.++..-.+|-++-.++.+..|.||+|+..|+-++|+++|++|.. +++.|..|.|+||-|+..++..
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~ 948 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA 948 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence 36677777777666666667777777777777888888888888888888887652 4556777888888877777777
Q ss_pred HHHHHHHcCCChhhhhh----HHHhhccCCCCCcchhhhhcccc
Q 020270 85 VFEVLLNAGIQAELILG----TIARAGNKNSNSNGDYLEDRVSF 124 (328)
Q Consensus 85 ~v~~Ll~~g~~~~~~~~----~l~~a~~~~~~~~~~~L~~~~~~ 124 (328)
++++|+++|+..-..+. |-.+|.+.++.+.+.||-++..|
T Consensus 949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~y 992 (1004)
T KOG0782|consen 949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQNY 992 (1004)
T ss_pred HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence 88888888777655444 67777777777777777776554
No 100
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.86 E-value=7.2e-09 Score=94.51 Aligned_cols=86 Identities=26% Similarity=0.299 Sum_probs=76.8
Q ss_pred HHHHHHHcCCHHHHHHHHh--CCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Q 020270 7 QLCEAARNGDIDKVKALIG--SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQE 84 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~--~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~ 84 (328)
|||.++...+.+-+..++. .+..++.+|..|.||||+|+.-|+.+.++.|+.+||++..+|++|++|||-|+..|+.+
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q 102 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ 102 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence 5999999999988877555 34568889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHc
Q 020270 85 VFEVLLNA 92 (328)
Q Consensus 85 ~v~~Ll~~ 92 (328)
++..++.+
T Consensus 103 ~i~~vlr~ 110 (560)
T KOG0522|consen 103 IITEVLRH 110 (560)
T ss_pred HHHHHHHH
Confidence 87766653
No 101
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.83 E-value=4.7e-09 Score=60.82 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=30.9
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDS 35 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~ 35 (328)
+|.||||+||..|+.+++++||++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 488999999999999999999999999998874
No 102
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.76 E-value=1.4e-08 Score=100.41 Aligned_cols=118 Identities=24% Similarity=0.406 Sum_probs=82.8
Q ss_pred CCceeeecccCCcc----hhHHh---------ccCCceEEeeccCH---HH--------------HHHHHHcCCCC----
Q 020270 157 GGHILNIGFGMGLV----DTAIQ---------QYSPVTHTILEAHP---EV--------------YERMLRTGWGE---- 202 (328)
Q Consensus 157 ~~~iLe~g~~~g~~----~~~~~---------~~~~~~~~a~e~~~---~~--------------~~~L~~~g~~~---- 202 (328)
...|+|+|||+|+. -...+ ....++++++|.+| +. .+.|++. |..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g 136 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQ-WPLLLPG 136 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHh-CCccCCC
Confidence 36799999999991 11121 12357888899876 11 2222221 221
Q ss_pred ---------CCCeeEEecccchhccCC-CCCCEEEEecC-----ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcch
Q 020270 203 ---------KNNVKIIFGRWQDNLSQL-ESYDGIFFDTY-----GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAF 267 (328)
Q Consensus 203 ---------~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f-----~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~ 267 (328)
...++++.|+..+.+..+ ..+|.+|+|.| |++|+. ++|..+.+++++||++++|+.-|.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~--~~~~~l~~~~~~~~~~~t~t~a~~---- 210 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSP--NLFNALARLARPGATLATFTSAGF---- 210 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccH--HHHHHHHHHhCCCCEEEEeehHHH----
Confidence 124456667776666665 45999999999 799999 999999999999999997765544
Q ss_pred hHHhhhHHHHHHHHhcCCeEEE
Q 020270 268 FHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 268 ~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
|++.|+++||.|+-
T Consensus 211 --------vr~~l~~~GF~v~~ 224 (662)
T PRK01747 211 --------VRRGLQEAGFTVRK 224 (662)
T ss_pred --------HHHHHHHcCCeeee
Confidence 45559999999873
No 103
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.75 E-value=1.7e-08 Score=92.61 Aligned_cols=89 Identities=24% Similarity=0.286 Sum_probs=83.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCC--CcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGAD--VSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
..|-||+|++.|+-++|+++|++|.. +++.|.+|.|+||-|+..++..+.++|++.||.+...|..|.||-..|-+.|
T Consensus 899 ~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~ 978 (1004)
T KOG0782|consen 899 HCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAG 978 (1004)
T ss_pred hhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcC
Confidence 46789999999999999999999964 5788899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHc
Q 020270 82 HQEVFEVLLNA 92 (328)
Q Consensus 82 ~~~~v~~Ll~~ 92 (328)
..+...+|-..
T Consensus 979 d~dlaayle~r 989 (1004)
T KOG0782|consen 979 DPDLAAYLESR 989 (1004)
T ss_pred CchHHHHHhhh
Confidence 99999998653
No 104
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.73 E-value=5.1e-09 Score=99.85 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=77.5
Q ss_pred HHHHHHhCC-C-CCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCC
Q 020270 19 KVKALIGSG-A-DVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS-NLSAGDFAMDSGHQEVFEVLLNAGIQ 95 (328)
Q Consensus 19 ~v~~LL~~g-a-d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~ 95 (328)
-++-++.+. - -.|.+|..|+|+||.|+..+..+++++||++|++++.+|.+ |+||||.|...|+.+|+-+||.+|+.
T Consensus 32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S 111 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS 111 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence 456666532 1 26889999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred hhhhhh----HHHhhcc
Q 020270 96 AELILG----TIARAGN 108 (328)
Q Consensus 96 ~~~~~~----~l~~a~~ 108 (328)
..+.+. ||..-++
T Consensus 112 L~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 112 LRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred eEEecccCCCHHHHHhh
Confidence 988877 6554443
No 105
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.66 E-value=1.9e-08 Score=99.12 Aligned_cols=90 Identities=33% Similarity=0.407 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Q 020270 2 EKEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSG 81 (328)
Q Consensus 2 ~~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g 81 (328)
..|.|+||.|+..|..-.+++||++|+++|..|..|.||||.+...|+...+..|+++||+.++.+..|.+|+++|....
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~ 733 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA 733 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CHHHHHHHHH
Q 020270 82 HQEVFEVLLN 91 (328)
Q Consensus 82 ~~~~v~~Ll~ 91 (328)
+.+++-++.-
T Consensus 734 ~~d~~~l~~l 743 (785)
T KOG0521|consen 734 NADIVLLLRL 743 (785)
T ss_pred cccHHHHHhh
Confidence 7776655543
No 106
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.61 E-value=9.3e-08 Score=76.32 Aligned_cols=67 Identities=30% Similarity=0.320 Sum_probs=63.5
Q ss_pred CCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 020270 27 GADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAG-APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAG 93 (328)
Q Consensus 27 gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 93 (328)
+.++|.+|..|||||+.|+..|+.+.|.+|+.+| +.+...|..|.+++.+|-..|+.+.++.|.+.-
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~ 69 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND 69 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence 4589999999999999999999999999999999 899999999999999999999999999998863
No 107
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.52 E-value=1.7e-06 Score=75.69 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=88.3
Q ss_pred hcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEE-ecCc
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFF-DTYG 232 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~-d~f~ 232 (328)
.....+||++|+|.|..............++++..+++++...+.... ..++.+..++.........+||.|+. +.+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l- 127 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAI- 127 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhH-
Confidence 356678999999999854433332345788888999999888775322 34566666665543333457999998 333
Q ss_pred cch--hhHHHHHHHHhhccCCCcEEEEeccccCC----cch--------hHHhhh-HHHHHHHHhcCCe-EEEEE
Q 020270 233 EYY--EDLREFHQHLPKLLKPGGIYSYFNGLCGG----NAF--------FHVVYC-HLVSLELENLGFS-MQLIP 291 (328)
Q Consensus 233 e~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g~~----~~~--------~~~~y~-~~~~~~l~~~G~~-~~~~~ 291 (328)
.++ .+...+++++.++|+|||++.+....... ... .|.... ......|+++||+ +++++
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEe
Confidence 333 36779999999999999999975332211 111 111111 1445588999998 55554
No 108
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.52 E-value=4.3e-07 Score=66.04 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=74.5
Q ss_pred eeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccchhhHHH
Q 020270 161 LNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYYEDLRE 240 (328)
Q Consensus 161 Le~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~~~l~~ 240 (328)
|++|+|.|..............++++.++++++...+.. ....+.+..++..+......+||.|+....-+++++...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~--~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRL--KNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHT--TTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcc--cccCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 689999998655555556778899999999999998855 344555777888877666689999999887777789999
Q ss_pred HHHHHhhccCCCcEEEE
Q 020270 241 FHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 241 ~~~~~~~lL~~gG~~~~ 257 (328)
+++++.|+|||||++.+
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999974
No 109
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.48 E-value=4.3e-07 Score=79.81 Aligned_cols=74 Identities=34% Similarity=0.475 Sum_probs=61.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMD 79 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 79 (328)
.-.|..||+.|+.+.|++|++.|.++|+.|....+||.+|+-.||.++||+||++||-..--.-+|.- .|+++.
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaL 110 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGAL 110 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999966543344543 334443
No 110
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.38 E-value=1e-05 Score=70.78 Aligned_cols=104 Identities=19% Similarity=0.099 Sum_probs=76.1
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCC----CCCCCeeEEecccchhccCCCCCCEEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGW----GEKNNVKIIFGRWQDNLSQLESYDGIFF 228 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~----~~~~~~~~~~g~w~~~~~~~~~fD~i~~ 228 (328)
..+..+|++|+|+|......... ......+++..+++++...+... ....++++..++..+.....++||.|+.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 34578999999999844332222 22478899999999998865421 1124677888887766555568999988
Q ss_pred ecCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 229 DTYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 229 d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
..--.++.+...+++++.++|||||++.+.
T Consensus 152 ~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 152 GYGLRNVVDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCcEEEEE
Confidence 554456677889999999999999999765
No 111
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.37 E-value=5.4e-07 Score=83.13 Aligned_cols=61 Identities=33% Similarity=0.390 Sum_probs=58.7
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPW 63 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~ 63 (328)
+|.|+||.||+.|++...++||=+|+|+..+|..|.|+|.||-..|.-+++..|+++|+..
T Consensus 660 ~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 660 DGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred CCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999864
No 112
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.36 E-value=2e-06 Score=64.86 Aligned_cols=101 Identities=22% Similarity=0.433 Sum_probs=75.9
Q ss_pred CCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCCCCCCEEEEecC-c
Q 020270 157 GGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY-G 232 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f-~ 232 (328)
+.+||++|+|+|........ .......+++..+++++.+.+.- .....++++..+++.........||.|+...+ .
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 46799999999995443333 35566889999999999988765 34568999999988222333356999999882 1
Q ss_pred cch---hhHHHHHHHHhhccCCCcEEEE
Q 020270 233 EYY---EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 233 e~~---~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..+ ++.+++++++.+.|+|||++.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 111 5667999999999999999985
No 113
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.36 E-value=7.4e-07 Score=78.36 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=55.7
Q ss_pred CcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChh
Q 020270 38 LTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAE 97 (328)
Q Consensus 38 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 97 (328)
.--|..||+.|..+.|+.|++.|.++|++|+...+||.+|+..||.++|++|+++|+-.+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~ 96 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS 96 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 345789999999999999999999999999999999999999999999999999997543
No 114
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.35 E-value=6.7e-06 Score=73.43 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=88.8
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHH--HcCCCCCCCeeEEecccchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERML--RTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~--~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~ 232 (328)
..++.|+++|||.|..........+-...+++..+.++..+. +........+.+......+... ...||.|+....-
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchh
Confidence 345789999999998544333344446788888887765432 1112223455555555555443 3479999987766
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEeccc--cCCcc------------hhHHhhh-HHHHHHHHhcCCe-EEEEEeeC
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYFNGL--CGGNA------------FFHVVYC-HLVSLELENLGFS-MQLIPLPV 294 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~~~~--g~~~~------------~~~~~y~-~~~~~~l~~~G~~-~~~~~~~~ 294 (328)
.|+.+...++.++.+.|+|||.+.+-.-. |..+. ..|..+. ...+..|+++||+ |+..++..
T Consensus 199 ~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred hccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 78888889999999999999999864321 21110 0011112 2445578999999 66666655
No 115
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.33 E-value=6.7e-06 Score=74.08 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=89.0
Q ss_pred CCCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 156 GGGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
...+||++|+|+|...... +........+++..+++++...+... ..++++..++..+.....++||.|.....-.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 4568999999999843322 22223467788899999988877532 23566777777665544467999988655566
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccCC---cchhHHhh----h-HHHHHHHHhcCCe-EEEEE
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCGG---NAFFHVVY----C-HLVSLELENLGFS-MQLIP 291 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~---~~~~~~~y----~-~~~~~~l~~~G~~-~~~~~ 291 (328)
+.+...+++++.++|+|||++.+.....+. .+.+.+.+ . ......|+++||+ |++++
T Consensus 191 ~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 191 WPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 777779999999999999999865322221 11112222 1 2444588999998 55444
No 116
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.33 E-value=1.7e-05 Score=71.47 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=89.2
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHH--HHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERM--LRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L--~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.++.||++|||.|..........+-...+++..+.++... .........++.+..+...+... ...||.|+.-..-.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 4578999999999854433343444578888777766532 22222224567777777776654 56799999865556
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEec----cccCCcc---hhHH----hh---h-HHHHHHHHhcCCe-EEEEEeeC
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFN----GLCGGNA---FFHV----VY---C-HLVSLELENLGFS-MQLIPLPV 294 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~----~~g~~~~---~~~~----~y---~-~~~~~~l~~~G~~-~~~~~~~~ 294 (328)
|..+...+++++.+.|+|||++.+-+ +-+.... .-|. +| . ......|+++||+ ++..++..
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 77788899999999999999998632 1111100 0011 11 1 1445588999999 55655544
No 117
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.30 E-value=1.9e-05 Score=67.85 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=74.8
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+.+||++|+|+|......... .....++++.++.+++...+.-.. ...++....++..+.....++||.|+....
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 34578999999999854433322 234778899999998877654221 123567777776554444468999998655
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
-.+.++...+++++.++|+|||++.+...
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 45556777999999999999999987643
No 118
>PLN02244 tocopherol O-methyltransferase
Probab=98.30 E-value=6.3e-06 Score=74.93 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=75.7
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
...+||++|||.|...............+++..+.+++...+.-. ....++.+..++..+.....++||.|+.....+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 456899999999985443333224567888888888877654311 122457777777666554557899999866667
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
++.+...+++++.++|||||++.+.
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 8888889999999999999999874
No 119
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.29 E-value=2.1e-05 Score=64.82 Aligned_cols=124 Identities=24% Similarity=0.303 Sum_probs=82.6
Q ss_pred CCCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.+..++++|+|+|........ ......++++.++++++.+.++-... ..+++++.++..+.. ....||.|+.+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 367899999999984433222 22346788898988777665431111 135888888887752 336799999976
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+..+..+++.+.++|+|||++.++++.....+. ......+...||. .+++
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~------~~~~e~~~~~~~~----~~~~ 167 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEI------EEAKRKCQVLGVE----PLEV 167 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHH------HHHHHhhhhcCce----Eeec
Confidence 344558889999999999999988654333211 2223455667888 6666
No 120
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.28 E-value=1.3e-06 Score=79.33 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=80.6
Q ss_pred cccCCCCCc------HHHHHHHhCcHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCChhhhhh--
Q 020270 31 SYFDSDGLT------PLMHAAKLGHANLVKTLLEAGAPWNALSS-SNLSAGDFAMDSGHQEVFEVLLNAGIQAELILG-- 101 (328)
Q Consensus 31 n~~d~~G~T------pLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~-- 101 (328)
..+|.+|.| -||.+++.|++++.--||..||++|..+. .|.||||+|++.|+..-+++|+-+|+++...+.
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G 200 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG 200 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence 345666655 48999999999999999999999999865 499999999999999999999999999998887
Q ss_pred --HHHhhccCCCCCcchhhhhcc
Q 020270 102 --TIARAGNKNSNSNGDYLEDRV 122 (328)
Q Consensus 102 --~l~~a~~~~~~~~~~~L~~~~ 122 (328)
|+..|-+.||.+..+.|.+..
T Consensus 201 mtP~~~AR~~gH~~laeRl~e~~ 223 (669)
T KOG0818|consen 201 MTPVDYARQGGHHELAERLVEIQ 223 (669)
T ss_pred CcHHHHHHhcCchHHHHHHHHHH
Confidence 999999999988888777643
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=98.28 E-value=2.2e-05 Score=70.68 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=94.8
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHc--------CCCCCCCeeEEecccchhccCC-CCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRT--------GWGEKNNVKIIFGRWQDNLSQL-ESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~--------g~~~~~~~~~~~g~w~~~~~~~-~~fD 224 (328)
...+++|.+|.|.|......-.. ......++|-.+++++...+. +.-..++++++.++..+.+... ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45679999999999854433333 335778889999999988862 1223568888888766655443 5799
Q ss_pred EEEEecCc-------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCC
Q 020270 225 GIFFDTYG-------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKN 296 (328)
Q Consensus 225 ~i~~d~f~-------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~ 296 (328)
.|+.|... ..|+. +|++.+.+.|+|||++++-.+-....+ +++. .+...|+++||.+......|+.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~--EFy~~~~~~LkPgGV~V~Qs~sp~~~~---~~~~-~i~~tL~~af~~v~~y~t~vPs 301 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTS--ELFARIATFLTEDGAFVCQSNSPADAP---LVYW-SIGNTIEHAGLTVKSYHTIVPS 301 (374)
T ss_pred EEEEcCCCccccchhhhhHH--HHHHHHHHhcCCCcEEEEecCChhhhH---HHHH-HHHHHHHHhCCceEEEEEecCC
Confidence 99999651 13444 899999999999999987643221111 1222 2556799999999888888854
No 122
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.26 E-value=1.6e-06 Score=79.58 Aligned_cols=57 Identities=28% Similarity=0.494 Sum_probs=53.6
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHc
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA 59 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 59 (328)
.|.||||.|+..|+.++++.|+.+|||+..++..|+||||-|+..|+.+++..++.+
T Consensus 54 ~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 54 PGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred CCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999888888765
No 123
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.23 E-value=5.5e-07 Score=81.27 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=80.3
Q ss_pred CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCChhhhhh----HHHhhccC
Q 020270 35 SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLN-AGIQAELILG----TIARAGNK 109 (328)
Q Consensus 35 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~----~l~~a~~~ 109 (328)
.++..++++|++.|.+..++-+.-.|.|++..|.+.+|+||+|+..|+.+++++|++ .+++++..+. ||..|...
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F 583 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF 583 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence 456789999999999999999999999999999999999999999999999999998 5788887776 99999999
Q ss_pred CCCCcchhhhhcc
Q 020270 110 NSNSNGDYLEDRV 122 (328)
Q Consensus 110 ~~~~~~~~L~~~~ 122 (328)
.|.+++++|....
T Consensus 584 ~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 584 KHKEVVKLLEEAQ 596 (622)
T ss_pred CcHHHHHHHHHHh
Confidence 9999999988754
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.22 E-value=1.3e-05 Score=76.44 Aligned_cols=134 Identities=18% Similarity=0.124 Sum_probs=90.2
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
..+.+||++|+|.|..............++++..+++++...++.......+.+..+++........+||.|+....-.+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 45668999999999743333332244678888889998887765433445677777777655433357999999766677
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEecccc---CCcch--------hHHhhhH-HHHHHHHhcCCeEE
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLC---GGNAF--------FHVVYCH-LVSLELENLGFSMQ 288 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g---~~~~~--------~~~~y~~-~~~~~l~~~G~~~~ 288 (328)
+.+...+++++.++|+|||++.+....- ..... ++..+.. .....|+++||.+.
T Consensus 345 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 345 IQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 7888899999999999999998642211 11111 1112222 44558999999943
No 125
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=9.5e-06 Score=69.19 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=56.5
Q ss_pred CeeEEecccchhccCCC----CCCEEEEecC-----ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHH
Q 020270 205 NVKIIFGRWQDNLSQLE----SYDGIFFDTY-----GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHL 275 (328)
Q Consensus 205 ~~~~~~g~w~~~~~~~~----~fD~i~~d~f-----~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~ 275 (328)
.+.+..|+..+.++... .+|+.|.|.| |++|++ +++..+.+..++||.+++|++-+ .
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~--e~l~~~a~~~~~~~~l~t~ssA~------------~ 212 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWED--ELLNLMARIPYRDPTLATFAAAI------------A 212 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccH--HHHHHHHhhcCCCCceechHHHH------------H
Confidence 44555666655555553 4899999999 789999 99999999999999999444433 6
Q ss_pred HHHHHHhcCCeEEEE
Q 020270 276 VSLELENLGFSMQLI 290 (328)
Q Consensus 276 ~~~~l~~~G~~~~~~ 290 (328)
||+.|.++||+|+-.
T Consensus 213 vRr~L~~aGF~v~~r 227 (252)
T COG4121 213 VRRRLEQAGFTVEKR 227 (252)
T ss_pred HHHHHHHcCceeeec
Confidence 667799999997764
No 126
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.17 E-value=1.6e-06 Score=85.80 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=81.3
Q ss_pred CCHHHHHHHHhCCCCCcccC--CCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 020270 15 GDIDKVKALIGSGADVSYFD--SDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNA 92 (328)
Q Consensus 15 g~~~~v~~LL~~gad~n~~d--~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 92 (328)
.+..++..=+.+++++|-.+ ..|.|+||.|+..|..-++++|+++|+++|..|..|.||+|.+...|+...+.+|+++
T Consensus 632 ~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~ 711 (785)
T KOG0521|consen 632 ECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR 711 (785)
T ss_pred cchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc
Confidence 34455555555666666533 4689999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhh----HHHhhccCCCCCc
Q 020270 93 GIQAELILG----TIARAGNKNSNSN 114 (328)
Q Consensus 93 g~~~~~~~~----~l~~a~~~~~~~~ 114 (328)
|++.+..+. ++..|....+.+.
T Consensus 712 ~a~~~a~~~~~~~~l~~a~~~~~~d~ 737 (785)
T KOG0521|consen 712 GADPNAFDPDGKLPLDIAMEAANADI 737 (785)
T ss_pred cccccccCccCcchhhHHhhhccccH
Confidence 999987665 6666654433333
No 127
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.17 E-value=2.5e-05 Score=64.27 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=80.7
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCc---
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYG--- 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~--- 232 (328)
...+++++|+|.|..........+ ...+++.++++++.+.++-......++...+++.+... .+||.|+.+.--
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVR--GKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccC--CcccEEEECCCCCCC
Confidence 346799999999995544444344 77888999999988776422222356777777655432 479999987421
Q ss_pred -c-----ch------------hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 233 -E-----YY------------EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 233 -e-----~~------------~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
. .| ..+..+++++.++|+|||++.+....... ...+...|++.||+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--------~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--------EPDTFDKLDERGFRYE 161 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--------hHHHHHHHHhCCCeEE
Confidence 0 11 12467899999999999999876432221 1233456889999854
No 128
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.17 E-value=1.2e-06 Score=86.25 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=94.0
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCCcHHHHHHHhCcHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGS-GADVSYFDSDGLTPLMHAAKLGHANLVKTLLE-AGAPWNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~n~~d~~g~tpL~~A~~~ 80 (328)
++.|-+|.++..++.-.++.+++- |-..+..|.+|.-.+|+ |..++.+..-+|+. .|..++.+|..|+||||+|+..
T Consensus 573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~ 651 (975)
T KOG0520|consen 573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR 651 (975)
T ss_pred cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence 467889999999999999999995 65566677777778888 55556666666654 5889999999999999999999
Q ss_pred CCHHHHHHHHHcCCChhhhhh----------HHHhhccCCCCCcchhhhhc
Q 020270 81 GHQEVFEVLLNAGIQAELILG----------TIARAGNKNSNSNGDYLEDR 121 (328)
Q Consensus 81 g~~~~v~~Ll~~g~~~~~~~~----------~l~~a~~~~~~~~~~~L~~~ 121 (328)
|+..++..|+..|++...... +...|..+++..+..||.+.
T Consensus 652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 999999999998888765443 44556667777777777665
No 129
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.12 E-value=2.6e-05 Score=69.99 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.+.+||++|||.|........ .-...++++..+++++....+... ...++....++.++.....++||.|+.-..-+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 345799999999985443332 234678899999999888764211 12357777777666554446799999877778
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+..+...+++++.++|||||++.+.
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 8888999999999999999999865
No 130
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.08 E-value=3.8e-05 Score=67.05 Aligned_cols=102 Identities=22% Similarity=0.249 Sum_probs=74.1
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhcc-CCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLS-QLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~-~~~~fD~i~~d~f 231 (328)
....+||++|+|+|......... ....++++..+++++...+.... ...++++..+..++... ...+||.|++...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 34568999999999854433332 34677889999999887664321 23457777787766542 2357999998766
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
-++.++...+++++.++|+|||++++
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 56667778999999999999999974
No 131
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.08 E-value=3.3e-05 Score=64.85 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=81.2
Q ss_pred cCCCceeeecccCCcchhHHhccC--CceEEeeccCHHHHHHHHH----cCCCCCCCeeEEe-cccchhccC--CCCCCE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS--PVTHTILEAHPEVYERMLR----TGWGEKNNVKIIF-GRWQDNLSQ--LESYDG 225 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~--~~~~~a~e~~~~~~~~L~~----~g~~~~~~~~~~~-g~w~~~~~~--~~~fD~ 225 (328)
.+.+++||+|...|......-..- ....+++|-+++.++...+ .|++ ..+.... |++.+.+.. .++||.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEEecCcHHHHHHhccCCCccE
Confidence 477999999999998544333322 3478889988888877655 3443 3366666 688777775 378999
Q ss_pred EEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 226 IFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 226 i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
||.|+-+..|. +||+.+.++|+|||++++-|.+-..
T Consensus 136 iFIDadK~~yp---~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 136 VFIDADKADYP---EYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEEeCChhhCH---HHHHHHHHHhCCCcEEEEeecccCC
Confidence 99999999887 8999999999999999998887764
No 132
>PRK04266 fibrillarin; Provisional
Probab=98.08 E-value=0.0001 Score=62.86 Aligned_cols=133 Identities=17% Similarity=0.193 Sum_probs=81.4
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchh---ccCCCCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDN---LSQLESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~---~~~~~~fD~i~~d~ 230 (328)
..+.+++++|+|+|.......... .-..++++.++++++.+.+.. ....++..+.++.... ....++||.|+.|.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a-~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVA-EERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHh-hhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 466789999999999443332222 346788899999888776542 2235667766664431 11124699999864
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEE-eccccCCcchh-HHhhhHHHHHHHHhcCCe-EEEEE
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSY-FNGLCGGNAFF-HVVYCHLVSLELENLGFS-MQLIP 291 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~-~~~~g~~~~~~-~~~y~~~~~~~l~~~G~~-~~~~~ 291 (328)
- ..|. ...+++++.+.|||||++.+ ..+...+.... ...|.. ....|+++||+ +++++
T Consensus 150 ~-~p~~-~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~-~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 150 A-QPNQ-AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKE-EIRKLEEGGFEILEVVD 210 (226)
T ss_pred C-ChhH-HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHH-HHHHHHHcCCeEEEEEc
Confidence 3 3222 23568899999999999997 23222221111 123322 33688999999 44444
No 133
>PRK03612 spermidine synthase; Provisional
Probab=98.07 E-value=0.00011 Score=70.74 Aligned_cols=136 Identities=20% Similarity=0.230 Sum_probs=93.7
Q ss_pred cCCCceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcC--------CCCCCCeeEEecccchhccCC-CCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTG--------WGEKNNVKIIFGRWQDNLSQL-ESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g--------~~~~~~~~~~~g~w~~~~~~~-~~fD 224 (328)
...+++|.+|.|.|..........+ .....+|-++++++...++. .-.+++++++.++..+.+... ++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 3567899999999985544444433 57888999999999988732 113467888888755544332 5799
Q ss_pred EEEEecCc-------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCC
Q 020270 225 GIFFDTYG-------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKN 296 (328)
Q Consensus 225 ~i~~d~f~-------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~ 296 (328)
.|..|... ..++. +|++.+.+.|+|||++++-.+-.-.+.. .+ ..+...|+++||.+....+.|+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~--ef~~~~~~~L~pgG~lv~~~~~~~~~~~---~~-~~i~~~l~~~gf~v~~~~~~vps 448 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSV--EFYRLLKRRLAPDGLLVVQSTSPYFAPK---AF-WSIEATLEAAGLATTPYHVNVPS 448 (521)
T ss_pred EEEEeCCCCCCcchhccchH--HHHHHHHHhcCCCeEEEEecCCcccchH---HH-HHHHHHHHHcCCEEEEEEeCCCC
Confidence 99999652 12333 8999999999999999965432111111 11 24555799999988877777743
No 134
>PRK00811 spermidine synthase; Provisional
Probab=98.04 E-value=0.00013 Score=64.63 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=94.4
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcC------CCCCCCeeEEecccchhccC-CCCCCEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTG------WGEKNNVKIIFGRWQDNLSQ-LESYDGI 226 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g------~~~~~~~~~~~g~w~~~~~~-~~~fD~i 226 (328)
...+++|.+|+|.|......-.. ......++|-.+++++...+.- ....++++++.++....+.. -..||.|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45678999999999865444333 3346788999999999887631 12356788888886555543 2579999
Q ss_pred EEecCcc------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCc
Q 020270 227 FFDTYGE------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGE 300 (328)
Q Consensus 227 ~~d~f~e------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 300 (328)
+.|.++. .++ .+|++.+.+.|+|||++++..+...... +.+. .+...|+++.-.|......|+. ...
T Consensus 155 i~D~~dp~~~~~~l~t--~ef~~~~~~~L~~gGvlv~~~~~~~~~~---~~~~-~i~~tl~~~F~~v~~~~~~vp~-~~~ 227 (283)
T PRK00811 155 IVDSTDPVGPAEGLFT--KEFYENCKRALKEDGIFVAQSGSPFYQA---DEIK-DMHRKLKEVFPIVRPYQAAIPT-YPS 227 (283)
T ss_pred EECCCCCCCchhhhhH--HHHHHHHHHhcCCCcEEEEeCCCcccCH---HHHH-HHHHHHHHHCCCEEEEEeECCc-ccC
Confidence 9997632 233 4999999999999999997644322211 1222 3345677776667777777733 234
Q ss_pred ccc
Q 020270 301 EVW 303 (328)
Q Consensus 301 ~~w 303 (328)
+.|
T Consensus 228 ~~w 230 (283)
T PRK00811 228 GLW 230 (283)
T ss_pred chh
Confidence 444
No 135
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.00 E-value=1.5e-05 Score=77.20 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=72.9
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCC----CCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC---------------
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSG----ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPW--------------- 63 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~g----ad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~--------------- 63 (328)
.+...+..|++.|+...|+..++.. .++|.+|.-|+++|+.|..+.+.+++++|++++...
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~ 103 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPL 103 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 3455677888888888888888732 357788888888888888888888888888774211
Q ss_pred ---------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCChhh
Q 020270 64 ---------------------NALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQAEL 98 (328)
Q Consensus 64 ---------------------n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 98 (328)
...-.-+.||+.+||..++.||+++|+++|+++..
T Consensus 104 VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~ 159 (822)
T KOG3609|consen 104 VELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI 159 (822)
T ss_pred HHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence 01122467999999999999999999999988764
No 136
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.97 E-value=0.00017 Score=61.46 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=84.0
Q ss_pred CCCceeeecccCCcchhHHh-ccCCceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQ-QYSPVTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~-~~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.+..+|++++|+|-...... ...+....++.-+..|++...+.--+.. .++.++.++.+.++....+||.+....--.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 57889999999998433222 2226778888899999998887653322 338889999999998889999988855555
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEeccccCCc
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGN 265 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~ 265 (328)
..++....+.+++|+|||||++.+--..-+..
T Consensus 131 nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 131 NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 66788899999999999999888754444443
No 137
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.97 E-value=0.00012 Score=64.52 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=74.6
Q ss_pred hcCCCceeeecccCCcchhH-Hhc-cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEec
Q 020270 154 CSGGGHILNIGFGMGLVDTA-IQQ-YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~-~~~-~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
...+..||++|+|.|..... ... +.....++++..+++++...++.... ..++.+..+++.+......+||.|+.+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 34567899999999973221 111 22235678888899888877643211 1356777777766543345799999887
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
...++.+...++++++++|+|||++.+..
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 66666677799999999999999999753
No 138
>PRK08317 hypothetical protein; Provisional
Probab=97.96 E-value=0.0003 Score=60.35 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=74.9
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~ 232 (328)
.....||++|+|.|......... .....++++..++.++...+.......++.+..+...........||.|+....-
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 45578999999999844333222 2346788888999888887752223445666666655433334579999987776
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
++..+...+++++.++|+|||.+.+.
T Consensus 98 ~~~~~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 98 QHLEDPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred hccCCHHHHHHHHHHHhcCCcEEEEE
Confidence 77778889999999999999999864
No 139
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.96 E-value=0.00019 Score=60.04 Aligned_cols=130 Identities=24% Similarity=0.283 Sum_probs=86.7
Q ss_pred cCCCceeeecccCCcchhHH--hccCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCC-CCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAI--QQYSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQL-ESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~--~~~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~-~~fD~i~~d 229 (328)
..+..++++|+|+|...... ........++++.++++++.+.++-. ....++.+..++..+.+... ..||.|+..
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 45678999999999843322 12233567888999999887654311 11235677777766554443 579999985
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCC
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVK 295 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~ 295 (328)
.. ..++.++++.+.+.|+|||++.+....- +. -..+...|++.||.+|-.++.++
T Consensus 119 ~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~-------~~-~~~~~~~l~~~g~~~~~~~~~~~ 173 (198)
T PRK00377 119 GG---SEKLKEIISASWEIIKKGGRIVIDAILL-------ET-VNNALSALENIGFNLEITEVIIA 173 (198)
T ss_pred CC---cccHHHHHHHHHHHcCCCcEEEEEeecH-------HH-HHHHHHHHHHcCCCeEEEEEehh
Confidence 53 2345689999999999999998633200 00 12444578899998888888773
No 140
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.96 E-value=0.00013 Score=62.36 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=80.9
Q ss_pred CceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 158 GHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
++||++|+|.|........ .......+++..+++++...+.- ......+.+..++...... ..+||.|+....-++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence 3689999999984332222 22345667777888877665531 1122345666555433221 246999998666666
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccC-------CcchhHHhhhHHHHHHHHhcCCeE-EEEEe
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCG-------GNAFFHVVYCHLVSLELENLGFSM-QLIPL 292 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~-------~~~~~~~~y~~~~~~~l~~~G~~~-~~~~~ 292 (328)
..+...+++++.++|+|||++.+..-... ....-|-.........|+++||.+ +.+++
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 77778999999999999999997533211 111111011123445789999995 34443
No 141
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.95 E-value=0.0003 Score=60.43 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCCceeeecccCCcchhHHhccCC--ceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSP--VTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~--~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
...+++++|+|.|..........+ ....+.+..+.+++...+.-.. ....+.+..++..+.......||.|+....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 457899999999984433333233 6788888889888888775322 134566666666554444467999987655
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
-.++.+...+++.+.++|+|||++.+.
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 566677889999999999999998865
No 142
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.95 E-value=0.00016 Score=59.79 Aligned_cols=125 Identities=20% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCCceeeecccCCcchhHHh-ccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQ-QYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~-~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.+.+++++|+|+|....... .......++++..+++++.+.++-... ..++++..++..+... .++||.|+...+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 36789999999998443222 233457888899998887765532111 1247888888766544 457999999764
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe-EEEEEeeC
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS-MQLIPLPV 294 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~-~~~~~~~~ 294 (328)
..+..+++.+.++|+|||++.+..+..... .+.-..+..|+. .+-.+..+
T Consensus 122 --~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~---------~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 122 --ASLSDLVELCLPLLKPGGRFLALKGRDPEE---------EIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred --cCHHHHHHHHHHhcCCCeEEEEEeCCChHH---------HHHHHHHhcCceEeeeEEEec
Confidence 345689999999999999999886543221 122234445888 44445555
No 143
>PRK04457 spermidine synthase; Provisional
Probab=97.95 E-value=7.1e-05 Score=65.43 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=76.5
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCC-C-CCCCeeEEecccchhccCC-CCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGW-G-EKNNVKIIFGRWQDNLSQL-ESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~-~-~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~ 230 (328)
...+++|++|+|.|.......... .....++|.++++++...+.-. . ...+++++.++..+.+... ..||.|+.|.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 345789999999999655443333 3567889999999998887532 2 2367888888876655443 5799999999
Q ss_pred Cccc-hh---hHHHHHHHHhhccCCCcEEEEe
Q 020270 231 YGEY-YE---DLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 231 f~e~-~~---~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
|... .. ...+|++.+.+.|+|||++++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 8432 11 1249999999999999999963
No 144
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.93 E-value=0.00034 Score=59.43 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=74.5
Q ss_pred CCCceeeecccCCcchhHHhccCC--ceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSP--VTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~--~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....|+++|+|.|..........+ ....+++.++..++...+... ...++.+..++..+.....+.||.|+......
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 567899999999985443333333 478888999999888877543 33456666676655443345799998755445
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+..++..+++.+.++|+|||++.+.
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 6677789999999999999999864
No 145
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.92 E-value=0.00022 Score=62.02 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=69.9
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccchh
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYYE 236 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~~ 236 (328)
...||++|+|+|......... .....+++..+++++...+... ......++.+.......+||.|+....-....
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~ 117 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLATATFDLAWSNLAVQWCG 117 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCCCCcEEEEEECchhhhcC
Confidence 467999999999854333322 2467888899999998877542 13445566655444445799998765433336
Q ss_pred hHHHHHHHHhhccCCCcEEEEec
Q 020270 237 DLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 237 ~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
++..++.++.++|+|||.+.+.+
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEe
Confidence 78899999999999999999754
No 146
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.91 E-value=8.7e-05 Score=59.55 Aligned_cols=124 Identities=26% Similarity=0.272 Sum_probs=83.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
....+||++|+|.|......... .....+++.++.+++. .......-.-+.....-..||.|+....-++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~ 90 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGSFDLIICNDVLEH 90 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSSEEEEEEESSGGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccchhhHhhHHHHhh
Confidence 55688999999999855544443 3388899999999987 1111111111122222357999999888888
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccCC------------cc--hhHHhhhH-HHHHHHHhcCCeEE
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCGG------------NA--FFHVVYCH-LVSLELENLGFSMQ 288 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~------------~~--~~~~~y~~-~~~~~l~~~G~~~~ 288 (328)
..++..+++++.++|+|||.+.+..-.... +. .....|.. ..+..|+++||++.
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 889999999999999999999986444210 10 11122333 66778999999853
No 147
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.90 E-value=0.0001 Score=64.31 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=72.6
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....+||++|+|.|.......... ....++++..+.+++...+.+ +.+..++.++.. ...+||.|+....-.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~------~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERG------VDARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcC------CcEEEcChhhCC-CCCCceEEEEehhhh
Confidence 455789999999999554443332 346788889999999887643 556666665543 335799999977655
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+..+...++++++++|+|||++.+.
T Consensus 101 ~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 5567789999999999999999874
No 148
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.88 E-value=0.00015 Score=60.81 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=82.3
Q ss_pred CCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCC-CCCCeeEEeccc-chhc--cCCCCCCEEEEec
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRW-QDNL--SQLESYDGIFFDT 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w-~~~~--~~~~~fD~i~~d~ 230 (328)
....+|++|+|+|.......... ....++++.++++++.+.++-.. ...++.+..+++ ..+. ....+||.|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~- 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN- 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE-
Confidence 45789999999998544333322 34688899999999888763211 124688888887 4443 223579999874
Q ss_pred Cccchhh---------HHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 231 YGEYYED---------LREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 231 f~e~~~~---------l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
|+..|.. ...+++++.++|+|||++.+.+. . . .|-..+...|++.|+.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~-~---~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----W-E---GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----C-H---HHHHHHHHHHHhCccccc
Confidence 4443321 35899999999999999996432 1 1 222334457888998765
No 149
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.86 E-value=0.00014 Score=58.02 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=79.4
Q ss_pred CCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccC-C-CCCCEEEEec
Q 020270 156 GGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQ-L-ESYDGIFFDT 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~-~-~~fD~i~~d~ 230 (328)
...+||++|+|+|....... .+.....++++-++++++...+.--. ...++++..+++.+ +.. + ..||.|+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 35789999999999544333 24467789999999999998873110 11279999999888 432 2 6899999998
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEEeccc
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSYFNGL 261 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~ 261 (328)
...+..+...+++++.++|+++|++.+....
T Consensus 82 ~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 8777788889999999999999999865444
No 150
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.86 E-value=2.3e-05 Score=76.10 Aligned_cols=88 Identities=25% Similarity=0.221 Sum_probs=69.2
Q ss_pred CCCcHHHHHHHhCcHHHHHHHHHcC----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCh---------------
Q 020270 36 DGLTPLMHAAKLGHANLVKTLLEAG----APWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQA--------------- 96 (328)
Q Consensus 36 ~G~TpLh~Aa~~g~~~~v~~Ll~~g----a~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~--------------- 96 (328)
.+.--.-.|+..|+...|+..++.. .++|.+|.-|+++|++|..+.+.+++++|+++....
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~ 103 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPL 103 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 3445567799999999999999863 467888999999999999999999999999875221
Q ss_pred -hhhh------------------------hHHHhhccCCCCCcchhhhhccc
Q 020270 97 -ELIL------------------------GTIARAGNKNSNSNGDYLEDRVS 123 (328)
Q Consensus 97 -~~~~------------------------~~l~~a~~~~~~~~~~~L~~~~~ 123 (328)
++.. .|+..|+...+.+++++|+.++.
T Consensus 104 VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 104 VELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 1100 07778888888999999998864
No 151
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.83 E-value=9.3e-05 Score=63.45 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred hcCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEec
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
...+..+|++++|+|......... ......++.-.+++++...+.-... ..+++...++.++....-++||.|..--
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 345679999999999855433332 2346677889999999887643211 2388999999888877778999998744
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
---..++....+++++|+|||||++++.-..-+.
T Consensus 125 glrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 125 GLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp -GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 3445567789999999999999999875433333
No 152
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.82 E-value=0.00011 Score=63.36 Aligned_cols=105 Identities=25% Similarity=0.329 Sum_probs=78.1
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHH----HHcCCCCCCCeeEEecccchhccCC-------C
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERM----LRTGWGEKNNVKIIFGRWQDNLSQL-------E 221 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L----~~~g~~~~~~~~~~~g~w~~~~~~~-------~ 221 (328)
...+++||+|...|......... ......++|.+++..+.. .+.|. ...+++..|...+.++.+ +
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhccccCC
Confidence 45688999999999854333222 234688888888776654 33343 367888889877766553 4
Q ss_pred CCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 222 SYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 222 ~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
+||.||.|+....|. .+|+.+.++|+|||++.+-|.+...
T Consensus 156 ~fD~iFiDadK~~Y~---~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 156 TFDFIFVDADKDNYI---NYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred cccEEEecCCHHHhH---HHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 799999999988886 7889999999999999987776654
No 153
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.80 E-value=0.00012 Score=62.94 Aligned_cols=106 Identities=27% Similarity=0.287 Sum_probs=75.7
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCC------CCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQL------ESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~------~~fD 224 (328)
...+++||+|.++|........ ......++++.+++.++...++- +.....+++..|++.+.+..+ ..||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4568899999999973322221 22347888898888877665531 112346888888876665432 4799
Q ss_pred EEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccC
Q 020270 225 GIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCG 263 (328)
Q Consensus 225 ~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~ 263 (328)
.||.|+....|. .+++.+.++|+|||++.+-|.+..
T Consensus 147 ~VfiDa~k~~y~---~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 147 FAFVDADKPNYV---HFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred EEEECCCHHHHH---HHHHHHHHhcCCCeEEEEEcCCcC
Confidence 999999876665 788999999999999998776653
No 154
>PLN02476 O-methyltransferase
Probab=97.78 E-value=0.00016 Score=63.27 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=77.2
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHH----cCCCCCCCeeEEecccchhccCC------CC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLR----TGWGEKNNVKIIFGRWQDNLSQL------ES 222 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~----~g~~~~~~~~~~~g~w~~~~~~~------~~ 222 (328)
...+++||+|.++|......... ..-...++|.+++..+...+ .|. ...+++..|...+.+..+ ..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 45689999999999844333221 12246788888877665533 343 357888889877665443 47
Q ss_pred CCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCc
Q 020270 223 YDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGN 265 (328)
Q Consensus 223 fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~ 265 (328)
||.||.|+....|. ++|+.+.++|+|||++.+-|.+...+
T Consensus 195 FD~VFIDa~K~~Y~---~y~e~~l~lL~~GGvIV~DNvL~~G~ 234 (278)
T PLN02476 195 YDFAFVDADKRMYQ---DYFELLLQLVRVGGVIVMDNVLWHGR 234 (278)
T ss_pred CCEEEECCCHHHHH---HHHHHHHHhcCCCcEEEEecCccCCc
Confidence 99999999977666 88999999999999999877776543
No 155
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.78 E-value=0.0001 Score=62.13 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
.+.+||++|||-|+......... ..-.++....+.++....+.......+......-++....-++||+|..-.--||+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 56889999999999655444333 67788888888888877655333344445555566655555789999998889999
Q ss_pred hhHHHHHHHHhhccCCCcEEEEe
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
++...|...+.+++||||++.+.
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEe
Confidence 99999999999999999998754
No 156
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.77 E-value=0.0008 Score=59.20 Aligned_cols=134 Identities=18% Similarity=0.156 Sum_probs=84.4
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHc-----CCCCCCCeeEEecccchhccC-CCCCCEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRT-----GWGEKNNVKIIFGRWQDNLSQ-LESYDGIF 227 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~-----g~~~~~~~~~~~g~w~~~~~~-~~~fD~i~ 227 (328)
...++||++|.|.|......-.. .......++..+++++...+. +.-..+++++..++....+.. ...||.|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34569999999999744332222 234677888999998877663 111235666666665443333 25799999
Q ss_pred EecCc------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 228 FDTYG------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 228 ~d~f~------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.|.+. ..++ .+|++.+.+.|+|||++++...-.... ..+-......|++..-.|......|
T Consensus 151 ~D~~~~~~~~~~l~~--~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~tl~~~F~~v~~~~~~v 217 (270)
T TIGR00417 151 VDSTDPVGPAETLFT--KEFYELLKKALNEDGIFVAQSESPWIQ----LELITDLKRDVKEAFPITEYYTANI 217 (270)
T ss_pred EeCCCCCCcccchhH--HHHHHHHHHHhCCCcEEEEcCCCcccC----HHHHHHHHHHHHHHCCCeEEEEEEc
Confidence 99872 1223 499999999999999999763211111 1122233456777755577666666
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00027 Score=60.03 Aligned_cols=118 Identities=22% Similarity=0.379 Sum_probs=78.4
Q ss_pred HHHhhcCCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccCCCCC
Q 020270 150 AKAICSGGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQLESY 223 (328)
Q Consensus 150 ~~~~~~~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~~~~f 223 (328)
...-...+.+|+|.|.|.|....... -+..-..+..|.+.+.++...++ |... .+....++..+..... .|
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d--~v~~~~~Dv~~~~~~~-~v 164 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD--RVTLKLGDVREGIDEE-DV 164 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc--ceEEEecccccccccc-cc
Confidence 33445778899999999999544333 22334566677777777776653 3322 2555455544444333 69
Q ss_pred CEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHH---HHHhcCCe
Q 020270 224 DGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSL---ELENLGFS 286 (328)
Q Consensus 224 D~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~---~l~~~G~~ 286 (328)
|.|+.|- |+.| ++.+++.++|+|||++++|+- +-..++. .|++.||.
T Consensus 165 Dav~LDm-p~PW----~~le~~~~~Lkpgg~~~~y~P-----------~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 165 DAVFLDL-PDPW----NVLEHVSDALKPGGVVVVYSP-----------TVEQVEKTVEALRERGFV 214 (256)
T ss_pred CEEEEcC-CChH----HHHHHHHHHhCCCcEEEEEcC-----------CHHHHHHHHHHHHhcCcc
Confidence 9999976 5766 788999999999999996654 2223333 57888987
No 158
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.75 E-value=2.3e-05 Score=57.70 Aligned_cols=92 Identities=26% Similarity=0.367 Sum_probs=48.6
Q ss_pred eeecccCCcchh-HHhccCCceEEeeccCHHHHH----HHHHcCCCCCCCeeEEecccchhccC-C-CCCCEEEEecCcc
Q 020270 161 LNIGFGMGLVDT-AIQQYSPVTHTILEAHPEVYE----RMLRTGWGEKNNVKIIFGRWQDNLSQ-L-ESYDGIFFDTYGE 233 (328)
Q Consensus 161 Le~g~~~g~~~~-~~~~~~~~~~~a~e~~~~~~~----~L~~~g~~~~~~~~~~~g~w~~~~~~-~-~~fD~i~~d~f~e 233 (328)
|++|+|+|.... .........+++++-.+.+++ .+.+.+. .........-.+.... . ++||.|+.-..-+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccccccceehhhhhHh
Confidence 689999998433 223335677788888888773 3333221 1112222111111111 1 4799999987777
Q ss_pred chhhHHHHHHHHhhccCCCcEE
Q 020270 234 YYEDLREFHQHLPKLLKPGGIY 255 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~ 255 (328)
+.++++++++.+.++|+|||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 7789999999999999999986
No 159
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.73 E-value=0.00099 Score=54.15 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=92.2
Q ss_pred hcCCCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 154 CSGGGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
...+..++++|+|+|...-.. ..+....-+|+|.+++.++....+-.. --.++.++.|+..+.+..+.+||.||.-.-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 356678999999999843322 234556778899999999887764211 146899999999999888888999999665
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCC
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKN 296 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~ 296 (328)
.. +.++++.+...|+|||+++. |+.--.. . ..+--.|++.|+. |-..+.|..
T Consensus 112 -~~---i~~ile~~~~~l~~ggrlV~-naitlE~------~-~~a~~~~~~~g~~-ei~~v~is~ 163 (187)
T COG2242 112 -GN---IEEILEAAWERLKPGGRLVA-NAITLET------L-AKALEALEQLGGR-EIVQVQISR 163 (187)
T ss_pred -CC---HHHHHHHHHHHcCcCCeEEE-EeecHHH------H-HHHHHHHHHcCCc-eEEEEEeec
Confidence 33 44899999999999999992 2211110 0 0222268889997 777777743
No 160
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.72 E-value=0.0017 Score=56.09 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=72.8
Q ss_pred cCCCceeeecccCCcchhHHhc---cCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCCCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ---YSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~---~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
.....||++|+|+|........ ......++++.++++++...+.- .....++++..+++.+... ..+|.|+..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI--KNASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC--CCCCEEeee
Confidence 4567899999999984432222 12456888999999998876541 2223457788888776543 358877653
Q ss_pred cCccch--hhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 230 TYGEYY--EDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 230 ~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
..-.+. .+...+++++.+.|+|||++.+...+...
T Consensus 130 ~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 130 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred cchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 322222 34568999999999999999987554433
No 161
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.71 E-value=0.00048 Score=57.04 Aligned_cols=127 Identities=23% Similarity=0.274 Sum_probs=82.4
Q ss_pred cCCCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~ 232 (328)
.....+|++|+|+|........ .......+++.++++++.+.++-.. .-.++++..++..... ...||.|+.+...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL--PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc--CcCCCEEEECCCc
Confidence 4567899999999995443332 2335678889999988887653110 1124666666543222 2469999987643
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe-EEEEEeeC
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS-MQLIPLPV 294 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~-~~~~~~~~ 294 (328)
.. +.++++.+.+.|+|||++.+... .. +.. ..+...|++.||. ++...+.+
T Consensus 108 ~~---~~~~l~~~~~~Lk~gG~lv~~~~-~~------~~~-~~~~~~l~~~g~~~~~~~~~~~ 159 (187)
T PRK08287 108 GN---LTAIIDWSLAHLHPGGRLVLTFI-LL------ENL-HSALAHLEKCGVSELDCVQLQV 159 (187)
T ss_pred cC---HHHHHHHHHHhcCCCeEEEEEEe-cH------hhH-HHHHHHHHHCCCCcceEEEEEE
Confidence 33 45889999999999999985321 11 111 2334579999997 77777766
No 162
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.69 E-value=0.0009 Score=58.07 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=72.0
Q ss_pred hcCCCceeeecccCCcchhHHhc---cCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEE
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQ---YSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFF 228 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~---~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~ 228 (328)
...+.+||++|+|+|........ ......++++..+++++...+.-. ....++++..+...+... ..+|.|+.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEeh
Confidence 34567899999999985432222 234678889999999988866421 123467778887765433 35888765
Q ss_pred ecCccch--hhHHHHHHHHhhccCCCcEEEEecccc
Q 020270 229 DTYGEYY--EDLREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 229 d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
...-.+. .+...+++++.+.|+|||++.+..-+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 3211111 234589999999999999999865443
No 163
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.68 E-value=8.1e-05 Score=68.04 Aligned_cols=62 Identities=23% Similarity=0.121 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCCCccc------CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Q 020270 17 IDKVKALIGSGADVSYF------DSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAM 78 (328)
Q Consensus 17 ~~~v~~LL~~gad~n~~------d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~ 78 (328)
.+.|.+|.+++++.|.+ +..-.|+||+|+.+|..++|.+||+.|||+.+.|..|.||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 56788888888776543 345689999999999999999999999999999999999999987
No 164
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.68 E-value=0.00027 Score=62.05 Aligned_cols=102 Identities=22% Similarity=0.244 Sum_probs=65.7
Q ss_pred hhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCCCCCCEEEEec
Q 020270 153 ICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 153 ~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
....+.+||++|||.|-..............++...++..+...+.- ......+.+...++.++.. .||.|..-.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 34678899999999998544333332446667777777776654321 2234567777777776554 699999887
Q ss_pred Cccch--hhHHHHHHHHhhccCCCcEEEE
Q 020270 231 YGEYY--EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 231 f~e~~--~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
--|+. .....||+++.++|+|||++..
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 77877 5677999999999999999975
No 165
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.68 E-value=0.00012 Score=58.89 Aligned_cols=66 Identities=29% Similarity=0.251 Sum_probs=59.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCC
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSS 69 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~g-ad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~ 69 (328)
|.|+|++|+..|+.+.|.+|+.+| +++...|..|.+++.+|-+.|+.+.|+.|.+.-.+-...++.
T Consensus 12 gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns 78 (223)
T KOG2384|consen 12 GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS 78 (223)
T ss_pred cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence 679999999999999999999999 899999999999999999999999999999985554444443
No 166
>PRK14967 putative methyltransferase; Provisional
Probab=97.67 E-value=0.00057 Score=58.36 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=79.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEec-Ccc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDT-YGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~-f~e 233 (328)
..+.++|++|+|.|..............++++-++..++...++-......+.+..+++.+... ...||.|+.+. |..
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~-~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE-FRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc-CCCeeEEEECCCCCC
Confidence 3457899999999985433332223367888889988886655322122346777777765432 25799999984 211
Q ss_pred --------------------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEE
Q 020270 234 --------------------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLI 290 (328)
Q Consensus 234 --------------------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~ 290 (328)
....+..+++++.++|++||++.+.+.--.. ...+...|+..||.++-.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--------~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--------VERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--------HHHHHHHHHHCCCCeEEE
Confidence 1112557888999999999999975332211 112334577889874443
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.66 E-value=9.2e-05 Score=62.07 Aligned_cols=105 Identities=26% Similarity=0.350 Sum_probs=78.2
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHH----cCCCCCCCeeEEecccchhccCC------CC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLR----TGWGEKNNVKIIFGRWQDNLSQL------ES 222 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~----~g~~~~~~~~~~~g~w~~~~~~~------~~ 222 (328)
...+++||+|.+.|......... .....+++|.+++..+...+ .|. ...++++.|...+.+..+ +.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhccCCCc
Confidence 45689999999999954433332 23578889988877776543 343 357888889877766543 36
Q ss_pred CCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 223 YDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 223 fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
||.||.|+....|. .+|+.+.++|+|||++.+-|.+...
T Consensus 122 fD~VFiDa~K~~y~---~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 122 FDFVFIDADKRNYL---EYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEEESTGGGHH---HHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred eeEEEEcccccchh---hHHHHHhhhccCCeEEEEccccccc
Confidence 99999999988876 7888899999999999998887653
No 168
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.63 E-value=8.3e-05 Score=54.95 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=67.0
Q ss_pred eeeecccCCcchhHHhc----cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEE-ecCccc
Q 020270 160 ILNIGFGMGLVDTAIQQ----YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFF-DTYGEY 234 (328)
Q Consensus 160 iLe~g~~~g~~~~~~~~----~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~-d~f~e~ 234 (328)
||++|+|.|-....... +.+....+++-.+++++...+........++++.++..+.......||.|++ .....+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 68999999984333222 2237888999999999999887655556888888888776655568999999 331222
Q ss_pred h--hhHHHHHHHHhhccCCCc
Q 020270 235 Y--EDLREFHQHLPKLLKPGG 253 (328)
Q Consensus 235 ~--~~l~~~~~~~~~lL~~gG 253 (328)
+ +++..+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 3 457799999999999997
No 169
>PLN03075 nicotianamine synthase; Provisional
Probab=97.63 E-value=0.0005 Score=60.53 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCceeeecccCC-cchhHH-hc-cCCceEEeeccCHHHHHHHHHcC---CCCCCCeeEEecccchhccCCCCCCEEEEe
Q 020270 156 GGGHILNIGFGMG-LVDTAI-QQ-YSPVTHTILEAHPEVYERMLRTG---WGEKNNVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 156 ~~~~iLe~g~~~g-~~~~~~-~~-~~~~~~~a~e~~~~~~~~L~~~g---~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
..++|+++|+|.| +..... .. ........++.+++.++...+.- .+....+++..++..+....+..||.||.+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6688999999965 222111 12 22235667888888887766543 223457888888876654445679999999
Q ss_pred cCccch--hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 230 TYGEYY--EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 230 ~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
+. -+| ++-.++++++.+.|+|||.+..-++.| -+++ -|..+-.-.++ ||.+.
T Consensus 203 AL-i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G-~r~~---LYp~v~~~~~~--gf~~~ 256 (296)
T PLN03075 203 AL-VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG-ARAF---LYPVVDPCDLR--GFEVL 256 (296)
T ss_pred cc-cccccccHHHHHHHHHHhcCCCcEEEEecccc-hHhh---cCCCCChhhCC--CeEEE
Confidence 42 333 455699999999999999999876533 3344 44544333455 88843
No 170
>PLN02366 spermidine synthase
Probab=97.61 E-value=0.0022 Score=57.34 Aligned_cols=135 Identities=19% Similarity=0.124 Sum_probs=87.2
Q ss_pred cCCCceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcCC-----CCCCCeeEEecccchhccCC--CCCCEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTGW-----GEKNNVKIIFGRWQDNLSQL--ESYDGI 226 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g~-----~~~~~~~~~~g~w~~~~~~~--~~fD~i 226 (328)
...+++|.+|.|.|..........+ .....+|-.+++++...+.-. -..++++++.++....+... ..||.|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578899999999986554444433 345677888988888766311 13568888888865554433 469999
Q ss_pred EEecCcc------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCC-eEEEEEeeCC
Q 020270 227 FFDTYGE------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGF-SMQLIPLPVK 295 (328)
Q Consensus 227 ~~d~f~e------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~-~~~~~~~~~~ 295 (328)
+.|.+.. .++. +|++.+.+.|+|||++++-.+---... +.+. .+...|++... .+.+..+.||
T Consensus 170 i~D~~dp~~~~~~L~t~--ef~~~~~~~L~pgGvlv~q~~s~~~~~---~~~~-~i~~tl~~~F~~~v~~~~~~vP 239 (308)
T PLN02366 170 IVDSSDPVGPAQELFEK--PFFESVARALRPGGVVCTQAESMWLHM---DLIE-DLIAICRETFKGSVNYAWTTVP 239 (308)
T ss_pred EEcCCCCCCchhhhhHH--HHHHHHHHhcCCCcEEEECcCCcccch---HHHH-HHHHHHHHHCCCceeEEEecCC
Confidence 9998731 2343 899999999999999985432111111 1222 23345666653 4666556663
No 171
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.59 E-value=0.00021 Score=54.11 Aligned_cols=102 Identities=23% Similarity=0.262 Sum_probs=72.4
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC--CCCeeEEecccchhc--cCCCCCCEEEEecCcc
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE--KNNVKIIFGRWQDNL--SQLESYDGIFFDTYGE 233 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~--~~~~~~~~g~w~~~~--~~~~~fD~i~~d~f~e 233 (328)
.+|++.|+|.|..............+++|-++..++.....-... ..++++..+++.+.. .....||.|++|.--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 579999999999433222222778899999999988877643222 346888999987776 3337899999987622
Q ss_pred --------chhhHHHHHHHHhhccCCCcEEEEec
Q 020270 234 --------YYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 234 --------~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
.......|++++.++|+|||++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 12345699999999999999999753
No 172
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.58 E-value=0.0022 Score=55.49 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=97.7
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcC-----CCCCCCeeEEecccchhccCC-C-CCCEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTG-----WGEKNNVKIIFGRWQDNLSQL-E-SYDGI 226 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g-----~~~~~~~~~~~g~w~~~~~~~-~-~fD~i 226 (328)
...+++|-+|.|.|.......... .....++|-.+.+++...+.- ....++++++.++....+... . .||.|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 357889999999998555444443 457788899999999876631 123578888888866666554 4 69999
Q ss_pred EEecCc------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCc
Q 020270 227 FFDTYG------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGE 300 (328)
Q Consensus 227 ~~d~f~------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 300 (328)
..|.+. ..++. +|++.+.+.|+|||++++..+.-.... -.-..+...|++....|....+.||. -++
T Consensus 155 i~D~~dp~~~~~~l~t~--ef~~~~~~~L~~~Gv~v~~~~~~~~~~----~~~~~i~~tl~~~F~~v~~~~~~vP~-~~~ 227 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTR--EFYQLCKRRLKPDGVLVLQAGSPFLHP----ELFKSILKTLRSVFPQVKPYTAYVPS-YGS 227 (246)
T ss_dssp EEESSSTTSCGGGGSSH--HHHHHHHHHEEEEEEEEEEEEETTTTH----HHHHHHHHHHHTTSSEEEEEEEECTT-SCS
T ss_pred EEeCCCCCCCcccccCH--HHHHHHHhhcCCCcEEEEEccCcccch----HHHHHHHHHHHHhCCceEEEEEEcCe-ecc
Confidence 999993 23444 999999999999999996542111111 11234556899999999999999954 344
Q ss_pred ccc
Q 020270 301 EVW 303 (328)
Q Consensus 301 ~~w 303 (328)
.-|
T Consensus 228 ~~~ 230 (246)
T PF01564_consen 228 GWW 230 (246)
T ss_dssp SEE
T ss_pred cce
Confidence 444
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0018 Score=56.90 Aligned_cols=129 Identities=23% Similarity=0.267 Sum_probs=88.4
Q ss_pred CceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcC------CCCCCCeeEEecccchhccCCC-CCCEEEEe
Q 020270 158 GHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTG------WGEKNNVKIIFGRWQDNLSQLE-SYDGIFFD 229 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g------~~~~~~~~~~~g~w~~~~~~~~-~fD~i~~d 229 (328)
++||-+|.|.|......-... .-....+|-.+.+++...+.- .+ .+++++..++....+.... .||+|..|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 699999999998665444444 455666789999999987742 22 5778888777666555443 69999999
Q ss_pred cCcc------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe-EEEEEeeC
Q 020270 230 TYGE------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS-MQLIPLPV 294 (328)
Q Consensus 230 ~f~e------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~-~~~~~~~~ 294 (328)
.+.- .++. +||+.+.+.|+++|++++-++- ..+.+-....+.+.++++ |. +......+
T Consensus 157 ~tdp~gp~~~Lft~--eFy~~~~~~L~~~Gi~v~q~~~----~~~~~~~~~~~~~~~~~v-f~~~~~~~~~i 221 (282)
T COG0421 157 STDPVGPAEALFTE--EFYEGCRRALKEDGIFVAQAGS----PFLQDEEIALAYRNVSRV-FSIVPPYVAPI 221 (282)
T ss_pred CCCCCCcccccCCH--HHHHHHHHhcCCCcEEEEecCC----cccchHHHHHHHHHHHhh-ccccccceecc
Confidence 9832 3444 9999999999999999977433 222223334455556665 55 44444444
No 174
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00021 Score=60.71 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=73.4
Q ss_pred CceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcCCCCCC-CeeEEecccchhccCC---CCCCEEEEecCc
Q 020270 158 GHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTGWGEKN-NVKIIFGRWQDNLSQL---ESYDGIFFDTYG 232 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~-~~~~~~g~w~~~~~~~---~~fD~i~~d~f~ 232 (328)
..++|+|||.|-..... +......+.++|-+...+..+++.--.... ++.++.++...++..+ ++.|.||. .||
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i-~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI-NFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE-ECC
Confidence 46899999999833222 334445889999666665555554333344 9999999987777655 37899988 788
Q ss_pred cchhhH---------HHHHHHHhhccCCCcEEEEec
Q 020270 233 EYYEDL---------REFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 233 e~~~~l---------~~~~~~~~~lL~~gG~~~~~~ 259 (328)
..|..- .+|++.+.+.|+|||.+-+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 888543 379999999999999999643
No 175
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.56 E-value=0.00038 Score=56.77 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=69.7
Q ss_pred CCCceeeecccCCcchhHHhccCCc-eEEeeccCHHHHHHHHHcCCCCCC-CeeEEecccchhccCCCCCCEEEEecCc-
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPV-THTILEAHPEVYERMLRTGWGEKN-NVKIIFGRWQDNLSQLESYDGIFFDTYG- 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~-~~~a~e~~~~~~~~L~~~g~~~~~-~~~~~~g~w~~~~~~~~~fD~i~~d~f~- 232 (328)
...++|++|+|.|+.........|- ...+++-+++.++...++--.... ++++...++.+... ...||.|+++.-.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP-DGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC-TTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc-ccceeEEEEccchh
Confidence 5678999999999955444444443 677888999988887663211111 27777777655444 3579999998631
Q ss_pred ----cchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 233 ----EYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 233 ----e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+...-++.|++...+.|+|||.+.+.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 12334679999999999999999653
No 176
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.53 E-value=0.001 Score=58.14 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=71.4
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....+||++|+|.|......... ......+++..+++++...+.. .++.+..++...... ..+||.|+....-.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQP-PQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccCC-CCCccEEEEccChh
Confidence 44578999999999854333332 3357788899999999887653 245555555443322 24799999876544
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+..+...+++++.++|+|||++.+-
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 5567789999999999999999874
No 177
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.53 E-value=0.0013 Score=47.72 Aligned_cols=100 Identities=26% Similarity=0.329 Sum_probs=71.3
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHH-cCCCCCCCeeEEecccchhcc-CCCCCCEEEEecCccc-h
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLR-TGWGEKNNVKIIFGRWQDNLS-QLESYDGIFFDTYGEY-Y 235 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~-~g~~~~~~~~~~~g~w~~~~~-~~~~fD~i~~d~f~e~-~ 235 (328)
.++++|+|.|...............+++.+++.++...+ ........+++..+++.+... ....+|.|+.+..... .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 378999999985443333456688888888888887762 111233566777777666553 3457999999887665 5
Q ss_pred hhHHHHHHHHhhccCCCcEEEEe
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.....++..+.+.+++||.+.+.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 56679999999999999999753
No 178
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.52 E-value=0.0011 Score=57.57 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=75.2
Q ss_pred hhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCCCCCCEEEEec
Q 020270 153 ICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 153 ~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
....+.++|++|+|+|+.........+....+++.++..++...++..... ..+.+..+. ..||.|+.+.
T Consensus 116 ~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani 187 (250)
T PRK00517 116 LVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANI 187 (250)
T ss_pred hcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcC
Confidence 345678999999999984433333333357888899998887766421111 112222221 1599999876
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEE
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
..+ .+..++.++.+.|+|||++.+. +.... -...+...|++.||.+..
T Consensus 188 ~~~---~~~~l~~~~~~~LkpgG~lils-gi~~~-------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 188 LAN---PLLELAPDLARLLKPGGRLILS-GILEE-------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred cHH---HHHHHHHHHHHhcCCCcEEEEE-ECcHh-------hHHHHHHHHHHCCCEEEE
Confidence 543 3458889999999999999953 22211 123455678899999543
No 179
>PRK06922 hypothetical protein; Provisional
Probab=97.51 E-value=0.0012 Score=63.89 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=73.7
Q ss_pred CCCceeeecccCCcchhHHh-ccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc--cCCCCCCEEEEecCc
Q 020270 156 GGGHILNIGFGMGLVDTAIQ-QYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL--SQLESYDGIFFDTYG 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~-~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~--~~~~~fD~i~~d~f~ 232 (328)
.+..+|++|||+|....... .......++++-.+.+++.+.+.......++.+..++..+.. ....+||.|++...-
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 46789999999998443332 234467888999999998887653222345566666654433 223579999875321
Q ss_pred cc-------------hhhHHHHHHHHhhccCCCcEEEEeccccC
Q 020270 233 EY-------------YEDLREFHQHLPKLLKPGGIYSYFNGLCG 263 (328)
Q Consensus 233 e~-------------~~~l~~~~~~~~~lL~~gG~~~~~~~~g~ 263 (328)
.. ..++..++++++++|||||++.+..+...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 11 24567999999999999999998765433
No 180
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.51 E-value=0.0014 Score=54.74 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
....+|++|+|.|......... .....+++..+.+++.+.+.-......+............ ..+||.|+....-.+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCEEEEecccccC
Confidence 3578999999999854333322 2367788888998887754321112223333333322111 1469998864332222
Q ss_pred --hhHHHHHHHHhhccCCCcEEEEec
Q 020270 236 --EDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 236 --~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
.++..+++.+.++|+|||.+.+..
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 456689999999999999865543
No 181
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.48 E-value=0.0015 Score=57.30 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred hhhccchHHHHHHHHhh--cCCCceeeecccCCcchhHHhccCCceEEeeccCHH------HHHHHHHcCCCCCCCeeEE
Q 020270 138 MMAWEKPLMEAHAKAIC--SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPE------VYERMLRTGWGEKNNVKII 209 (328)
Q Consensus 138 ~~~~~tpL~~a~~~~~~--~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~------~~~~L~~~g~~~~~~~~~~ 209 (328)
+..|.+..-+....... -.+++|+++||+.|...-...+..+....+++..+. .++.++. ....+...
T Consensus 95 DtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg----~~~~~~~l 170 (315)
T PF08003_consen 95 DTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG----QDPPVFEL 170 (315)
T ss_pred cccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC----CCccEEEc
Confidence 33455555544333222 357899999999999665556677778888886543 2233321 12233333
Q ss_pred ecccchhccCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccc--cCC------------cchhHHhhh-H
Q 020270 210 FGRWQDNLSQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGL--CGG------------NAFFHVVYC-H 274 (328)
Q Consensus 210 ~g~w~~~~~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~--g~~------------~~~~~~~y~-~ 274 (328)
.-..+++.. ...||.||+-.--=|-.+.-..+.++.+.|++||.+..-+-. |.. -+..|-+-. .
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~ 249 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVA 249 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHH
Confidence 223555554 678999999776444456668899999999999999864332 111 111111111 2
Q ss_pred HHHHHHHhcCCe-EEEEEeeCCCCCCcc
Q 020270 275 LVSLELENLGFS-MQLIPLPVKNCLGEE 301 (328)
Q Consensus 275 ~~~~~l~~~G~~-~~~~~~~~~~~~~~~ 301 (328)
..+.-|+.+||. |+-.++.+ .++.|+
T Consensus 250 ~L~~wl~r~gF~~v~~v~~~~-Tt~~EQ 276 (315)
T PF08003_consen 250 ALKNWLERAGFKDVRCVDVSP-TTIEEQ 276 (315)
T ss_pred HHHHHHHHcCCceEEEecCcc-CCHHHh
Confidence 555688999998 77666666 444443
No 182
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.47 E-value=0.00082 Score=64.17 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=95.1
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchh--ccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDN--LSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~--~~~~~~fD~i~~d~f~e 233 (328)
....+|++|+|.|......... .....+++..+++++...+.. ....++.+..++.... .....+||.|+....-.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 3467999999999854433332 236788889999988765422 1234566766665422 22235799999865433
Q ss_pred chh--hHHHHHHHHhhccCCCcEEEEeccccCC--------cchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccc
Q 020270 234 YYE--DLREFHQHLPKLLKPGGIYSYFNGLCGG--------NAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVW 303 (328)
Q Consensus 234 ~~~--~l~~~~~~~~~lL~~gG~~~~~~~~g~~--------~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w 303 (328)
+.. ++..+++++.++|+|||++.+....... ++..|-. ...-...+.++||..+ ....|
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~----------~~~~~ 183 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYRE-PRFYTKVFKECHTRDE----------DGNSF 183 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecC-hHHHHHHHHHheeccC----------CCCEE
Confidence 333 3678999999999999999875222111 1221111 1133345778888722 23455
Q ss_pred ccccccccccCcccccce
Q 020270 304 EGVKHKYWQLDTYYLPVC 321 (328)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~ 321 (328)
+-...-|+..++|-||--
T Consensus 184 ~~~~~~~~~~~~~~~~~~ 201 (475)
T PLN02336 184 ELSLVGCKCIGAYVKNKK 201 (475)
T ss_pred EEEEEEeechhhhhhccC
Confidence 556667888888888843
No 183
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.001 Score=54.62 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC-CCee-EEecccchhc-cCCCCCCEEEEecCc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK-NNVK-IIFGRWQDNL-SQLESYDGIFFDTYG 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~-~~~g~w~~~~-~~~~~fD~i~~d~f~ 232 (328)
+-..+||+|+|+|..-.......--..+.++.++.+-+.+.+.-+... ..+. +..+..+++. ..-.++|.|.-----
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 446689999999984433332233345667799999999988655443 3333 4555555444 123678988762222
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEe-ccccCCc
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYF-NGLCGGN 265 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~-~~~g~~~ 265 (328)
-+.++..+.+.++.++|+|||++-|. |+.|...
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 34466679999999999999999987 7777653
No 184
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.47 E-value=0.00059 Score=56.89 Aligned_cols=124 Identities=16% Similarity=0.209 Sum_probs=80.0
Q ss_pred CCCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccC---CCCCCEEEEec
Q 020270 156 GGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQ---LESYDGIFFDT 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~---~~~fD~i~~d~ 230 (328)
....+|++|+|.|........ .......+++..+++++...+..... -.+++++.++..+.... -.++|.|+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~- 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN- 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE-
Confidence 346799999999995433333 23357788999998888775532111 13788888887665422 2479998875
Q ss_pred CccchhhH---------HHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcC-CeEE
Q 020270 231 YGEYYEDL---------REFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLG-FSMQ 288 (328)
Q Consensus 231 f~e~~~~l---------~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G-~~~~ 288 (328)
||..|..- .++++++.++|+|||.+.+.+. .. .|..-+...|.+.| |...
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td----~~----~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD----NE----PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC----CH----HHHHHHHHHHHhCCCeEec
Confidence 56666321 3799999999999999986441 11 23343344555555 7643
No 185
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.45 E-value=0.0025 Score=54.71 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhcc-CCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLS-QLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~-~~~~fD~i~~d~f~e 233 (328)
.....||++|+|.|......... ....++++.+++.++...+........+.+....+.+... ....||.|+....-+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 34578999999999844333322 2457888888888887765421112245555566655542 225799998866666
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+..+...++..+.++|+|||++.+-
T Consensus 126 ~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 126 HVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 6777789999999999999998753
No 186
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.44 E-value=0.002 Score=54.84 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCC-CeeEEecccchhccCC-CCCCEEEEecCccc
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKN-NVKIIFGRWQDNLSQL-ESYDGIFFDTYGEY 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~-~~~~~~g~w~~~~~~~-~~fD~i~~d~f~e~ 234 (328)
...|+++|+|.|.......... ....+++.++.+++...+....... .+.+..+...+..... ..||.|+....-++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 5689999999998433222222 3477888888888777653222222 4666666665554332 57999988665566
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEe
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
..+...+++.+.++|+|||.+.+.
T Consensus 125 ~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 125 VPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEE
Confidence 677789999999999999998764
No 187
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.44 E-value=0.00086 Score=57.54 Aligned_cols=100 Identities=22% Similarity=0.365 Sum_probs=72.4
Q ss_pred CCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 157 GGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
...||++|+|.|........ .......+++..+++++...+... .++....++..+......+||.|+....-++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhhc
Confidence 36799999999974333322 233456788888999887776432 25666677766655444679999987665555
Q ss_pred hhHHHHHHHHhhccCCCcEEEEec
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
.+...++.++.++|+|||++.+..
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 678899999999999999999653
No 188
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.44 E-value=0.00026 Score=38.23 Aligned_cols=27 Identities=48% Similarity=0.614 Sum_probs=15.2
Q ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCCC
Q 020270 37 GLTPLMHAAKLGHANLVKTLLEAGAPW 63 (328)
Q Consensus 37 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~ 63 (328)
|.||+|+|+..++.++++.|+++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 455555555555555555555555443
No 189
>PRK14968 putative methyltransferase; Provisional
Probab=97.43 E-value=0.0025 Score=52.51 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=76.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccCCCCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
..+..+|++|+|.|......... ....++++.++++++...++ +.. +.++....+++.+.... ..||.|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~~-~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEPFRG-DKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccccccc-cCceEEEECC
Confidence 44568999999999954433333 45677888999888877543 221 11255555655443322 2699998753
Q ss_pred C--cc-------------------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEE
Q 020270 231 Y--GE-------------------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 231 f--~e-------------------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
- +. ....+..+++++.++|+|||.+.+...--... ......|+++||.+..
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--------~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--------DEVLEYLEKLGFEAEV 170 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--------HHHHHHHHHCCCeeee
Confidence 2 10 01224578999999999999887653211111 1234468889998543
No 190
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.41 E-value=0.0032 Score=53.49 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
...++|++|||.|......... .....+++..+++++...+...... .++.+..+++.... .+||.|+.-..-.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHH
Confidence 4678999999999854444333 3467889999999988776432211 35677777766543 5799987633333
Q ss_pred ch--hhHHHHHHHHhhccCCCcEEEEeccccCC--------------c--chhHHhhhHHHHHHHHhcCCeEEEEE
Q 020270 234 YY--EDLREFHQHLPKLLKPGGIYSYFNGLCGG--------------N--AFFHVVYCHLVSLELENLGFSMQLIP 291 (328)
Q Consensus 234 ~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g~~--------------~--~~~~~~y~~~~~~~l~~~G~~~~~~~ 291 (328)
++ .++..+++++.+++++++.+++... +.. + ...+-....-.+..|+++||.+....
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPK-TAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCC-chHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 33 3466888999999998888876432 110 0 00011111245557899999966554
No 191
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.41 E-value=0.00058 Score=62.45 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=81.0
Q ss_pred CCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccC--CCCCCEEEEecCc
Q 020270 157 GGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQ--LESYDGIFFDTYG 232 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~--~~~fD~i~~d~f~ 232 (328)
...+||+|||.|........ .......++|-++.+++.+.+.-.. .-.++.++.++...+... -+++|.||.. ||
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln-FP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH-FP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe-CC
Confidence 45799999999984433333 3345789999888887766553211 234788888887654322 3679999874 77
Q ss_pred cchhhH-------HHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHh-cCCeEEE
Q 020270 233 EYYEDL-------REFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELEN-LGFSMQL 289 (328)
Q Consensus 233 e~~~~l-------~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~-~G~~~~~ 289 (328)
..|..- ..|++.+.++|+|||.+.+.+. .+.|...+...+.+ .++.+++
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD--------~~~y~~~~~e~~~~~~~~~~~~ 258 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD--------SELYFEFSLELFLKLPKAKIEI 258 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE--------CHHHHHHHHHHHHhCCCceeec
Confidence 777421 3799999999999999985332 22345433333444 4566544
No 192
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.41 E-value=0.0016 Score=57.84 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc--
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY-- 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~-- 234 (328)
..++|++|+|.|......... .....+++..+.+++.+.+.-.....+++....+...... .++||.|+....-.+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 458999999999844333222 2467888999999888765432223345554444333211 357999987643221
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEecccc
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
-+++..+++.+.+.|+|||++.+...+.
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~ 226 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMD 226 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2356789999999999999976654433
No 193
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.39 E-value=0.0018 Score=54.47 Aligned_cols=110 Identities=20% Similarity=0.203 Sum_probs=70.0
Q ss_pred chHHHHHHHHh--hcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchh
Q 020270 143 KPLMEAHAKAI--CSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDN 216 (328)
Q Consensus 143 tpL~~a~~~~~--~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~ 216 (328)
+|.+.+..... ...+.++|++|+|+|........ ......++++.++++++...++- ......+++..++..+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 55554433222 24557899999999984432221 12346788999998887665421 11123467777776554
Q ss_pred ccCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 217 LSQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 217 ~~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
......||.|+.+...+ .+.+++.+.|+|||++.+.
T Consensus 137 ~~~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEKHAPFDAIIVTAAAS------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CccCCCccEEEEccCcc------hhhHHHHHhcCcCcEEEEE
Confidence 44446799999987644 3345678899999999864
No 194
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.36 E-value=9.3e-05 Score=73.44 Aligned_cols=85 Identities=27% Similarity=0.312 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCcc------CCCCCCHHHHHHH
Q 020270 7 QLCEAARNGDIDKVKALIG-SGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNAL------SSSNLSAGDFAMD 79 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~-~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~------d~~g~tpL~~A~~ 79 (328)
-+|. |..++.++.-+|+. +|..++.+|..|+||||||+..|+..++..|++.|++.++. +-.|.|+-.+|..
T Consensus 611 V~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s 689 (975)
T KOG0520|consen 611 VIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA 689 (975)
T ss_pred hhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence 3555 55566666555554 78889999999999999999999999999999988876543 2358999999999
Q ss_pred cCCHHHHHHHHHc
Q 020270 80 SGHQEVFEVLLNA 92 (328)
Q Consensus 80 ~g~~~~v~~Ll~~ 92 (328)
.|+..+..+|-+.
T Consensus 690 ~g~~gia~~lse~ 702 (975)
T KOG0520|consen 690 NGHKGIAGYLSEK 702 (975)
T ss_pred ccccchHHHHhhh
Confidence 9999998888665
No 195
>PRK05785 hypothetical protein; Provisional
Probab=97.36 E-value=0.0021 Score=54.94 Aligned_cols=111 Identities=8% Similarity=0.046 Sum_probs=74.3
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
...+||++|+|+|...............+++..+++++...+.. ....++.++.....++||.|+....-.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 35789999999998543333322357788999999999876532 23456666665555789999885545567
Q ss_pred hhHHHHHHHHhhccCCCc-EEEEeccccCCcchhHHhhh
Q 020270 236 EDLREFHQHLPKLLKPGG-IYSYFNGLCGGNAFFHVVYC 273 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG-~~~~~~~~g~~~~~~~~~y~ 273 (328)
.++...++++.++|||.. ++.+...-....+.+|..|.
T Consensus 124 ~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~ 162 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYL 162 (226)
T ss_pred CCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHH
Confidence 888899999999999964 45443322222344444443
No 196
>PTZ00146 fibrillarin; Provisional
Probab=97.36 E-value=0.0069 Score=53.29 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=78.1
Q ss_pred cCCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchh---ccCCCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDN---LSQLESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~---~~~~~~fD~i~~d 229 (328)
.....||++|+++|......... ..-..++++-.+.+.+.|++.- ....++..+.++.... ....++||.||.|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a-k~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA-KKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh-hhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 44568999999999844333222 2336788887787776666532 1235666666664321 1123579999999
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEEe-ccccCCc-chhHHhhhHHHHHHHHhcCCe
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSYF-NGLCGGN-AFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~~-~~~g~~~-~~~~~~y~~~~~~~l~~~G~~ 286 (328)
.. +.+ +.+.+..++.+.|||||.|.+. .....+. ..--++|...+ ..|+++||+
T Consensus 210 va-~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA-QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC-Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHH-HHHHHcCCc
Confidence 95 322 3335667899999999999972 2221111 11122344333 568999999
No 197
>PLN02823 spermine synthase
Probab=97.32 E-value=0.0064 Score=54.96 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=74.3
Q ss_pred CCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCC-----CCCCeeEEecccchhccCC-CCCCEEEE
Q 020270 156 GGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWG-----EKNNVKIIFGRWQDNLSQL-ESYDGIFF 228 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~-----~~~~~~~~~g~w~~~~~~~-~~fD~i~~ 228 (328)
..+++|.+|.|.|......-.. .......+|-++++++...+.-.. .+++++++.++....+... ..||.|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999855433333 344677889999999998875321 2577888887755554333 57999999
Q ss_pred ecCc--------cchhhHHHHHH-HHhhccCCCcEEEEecc
Q 020270 229 DTYG--------EYYEDLREFHQ-HLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 229 d~f~--------e~~~~l~~~~~-~~~~lL~~gG~~~~~~~ 260 (328)
|.+. ..|+. +|++ .+.+.|+|||++++-.+
T Consensus 183 D~~dp~~~~~~~~Lyt~--eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLADPVEGGPCYQLYTK--SFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCCCccccCcchhhccH--HHHHHHHHHhcCCCcEEEEecc
Confidence 9652 13444 8998 89999999999986544
No 198
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.32 E-value=0.009 Score=49.72 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=83.9
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc--cCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL--SQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~--~~~~~fD~i~~d~f~ 232 (328)
.....++++|+|.|...............+++..+++++...+.+ +.+..+...+.. ....+||.|+....-
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~------~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARG------VNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcC------CeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 345689999999998544332222334578888888888876543 455556654422 123579999987655
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEecc-------------ccC-Ccch---hHH----hh--hHHHHHHHHhcCCeEEE
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYFNG-------------LCG-GNAF---FHV----VY--CHLVSLELENLGFSMQL 289 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~~~-------------~g~-~~~~---~~~----~y--~~~~~~~l~~~G~~~~~ 289 (328)
++..+...+++++.+.++++ ++++.+- ..+ .+.. .++ .+ .......++++||++..
T Consensus 86 ~~~~d~~~~l~e~~r~~~~~-ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~ 164 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRHA-IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILD 164 (194)
T ss_pred HcCcCHHHHHHHHHHhCCeE-EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEE
Confidence 66677778999988887653 4443221 000 0000 001 11 22555689999999877
Q ss_pred EEeeCCCCCC
Q 020270 290 IPLPVKNCLG 299 (328)
Q Consensus 290 ~~~~~~~~~~ 299 (328)
...-..+.++
T Consensus 165 ~~~~~~~~~~ 174 (194)
T TIGR02081 165 RAAFDVDGRG 174 (194)
T ss_pred EEEecccccc
Confidence 6666545443
No 199
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.32 E-value=0.0034 Score=57.99 Aligned_cols=166 Identities=18% Similarity=0.220 Sum_probs=96.5
Q ss_pred CCCcchhhhhcccccCCccccccchhhhhhccchHHHHHHHHhhcCCCceeeecccCCcchhHHhc-cCCceEEeeccCH
Q 020270 111 SNSNGDYLEDRVSFSEGKLVDSDSKAIMMAWEKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHP 189 (328)
Q Consensus 111 ~~~~~~~L~~~~~~~~~~l~~~~~~~~~~~~~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~ 189 (328)
..++++|+.....+-...+ .-+...-....+|................++++|+|+|........ .......+++.++
T Consensus 207 ~gePlqYIlG~~~F~G~~f-~V~p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 207 NGEPVAYILGVREFYGRRF-AVNPNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred cCCCceeEeeeeeecCcEE-EeCCCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 4467777766554422111 0111111122235444443332333456899999999985433322 2334677889999
Q ss_pred HHHHHHHHcCCCCCCCeeEEecccchhc-cCCCCCCEEEEecC--c-----------------------cchhhHHHHHH
Q 020270 190 EVYERMLRTGWGEKNNVKIIFGRWQDNL-SQLESYDGIFFDTY--G-----------------------EYYEDLREFHQ 243 (328)
Q Consensus 190 ~~~~~L~~~g~~~~~~~~~~~g~w~~~~-~~~~~fD~i~~d~f--~-----------------------e~~~~l~~~~~ 243 (328)
++++...++-.....++.+..+++.+.. +....||.|+.+.- + +.....+.+.+
T Consensus 286 ~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~ 365 (423)
T PRK14966 286 PALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQ 365 (423)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHH
Confidence 9998887653222346788888875432 22246999999762 1 01112346777
Q ss_pred HHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 244 HLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 244 ~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
.+.+.|+|||.+.+..+.... ..++..|++.||.
T Consensus 366 ~a~~~LkpgG~lilEiG~~Q~---------e~V~~ll~~~Gf~ 399 (423)
T PRK14966 366 GAPDRLAEGGFLLLEHGFDQG---------AAVRGVLAENGFS 399 (423)
T ss_pred HHHHhcCCCcEEEEEECccHH---------HHHHHHHHHCCCc
Confidence 788899999999876664322 2445567778986
No 200
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.0019 Score=56.31 Aligned_cols=113 Identities=21% Similarity=0.192 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHH----HHHcCCCCCCCeeEEecccchhccCCCC
Q 020270 147 EAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER----MLRTGWGEKNNVKIIFGRWQDNLSQLES 222 (328)
Q Consensus 147 ~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~----L~~~g~~~~~~~~~~~g~w~~~~~~~~~ 222 (328)
..+.....+++..||++|||.|..........-....++.-.++..+. +.+.|. ..++++....|.++...
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~e~--- 137 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFEEP--- 137 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccccc---
Confidence 334444557899999999999984332222222333444333333333 444553 35667766778777655
Q ss_pred CCEEEEecCccchhh--HHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 223 YDGIFFDTYGEYYED--LREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 223 fD~i~~d~f~e~~~~--l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
||.|..-.--|+... ...||..+.+.|+|||++...+-.+..
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 999888666565543 669999999999999999976555555
No 201
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.31 E-value=0.0025 Score=58.87 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=70.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
..+.++|++|+|.|...............+++..+++++...+... ...+++..+++.+. ..+||.|+....-++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 4667899999999985443333334467788889999998877542 23456655665543 257999987655454
Q ss_pred h--hhHHHHHHHHhhccCCCcEEEEe
Q 020270 235 Y--EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 235 ~--~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
. ..+..+++++.++|+|||++.+.
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 34568999999999999999864
No 202
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.30 E-value=0.002 Score=53.86 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
...++|++|+|.|......... -....+++..+++++.+.+.-.... .+++....++.+.... ..||.|+....-.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 3478999999999854433332 2366788888988877654321111 2355555555443222 46999987543222
Q ss_pred h--hhHHHHHHHHhhccCCCcEEEEe
Q 020270 235 Y--EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 235 ~--~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
. .++..+++++.++|+|||.+.+.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1 35679999999999999986443
No 203
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.29 E-value=0.00058 Score=58.15 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCC-------CeeEEecccchhccCCCCCCEEEEe
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKN-------NVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~-------~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
+++||++|||.|+......... ....++..-.++++...++....+. .+.......+... +.||+|..-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 3669999999999654333322 5678888889999988887322211 1222222232222 349998887
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..-||+.++.+|.+.+.++|+|+|++..
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEe
Confidence 7789999999999999999999999874
No 204
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.26 E-value=0.0025 Score=54.07 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=65.9
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+.++|++|+|+|........ ......++++.++++++...++-... ..++++..++..+.......||.|+.+..
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 4567899999999984433222 22335788899999888765431111 13577777776554444467999999875
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.. .+.+.+.+.|+|||++.+.
T Consensus 156 ~~------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 GP------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cc------cccHHHHHhcCcCcEEEEE
Confidence 44 3345677899999999864
No 205
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.25 E-value=0.0023 Score=48.74 Aligned_cols=99 Identities=23% Similarity=0.348 Sum_probs=64.9
Q ss_pred CCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhcc-CCCCCCEEEEecCc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLS-QLESYDGIFFDTYG 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~-~~~~fD~i~~d~f~ 232 (328)
....++++|+|.|.......... ....++++.++..++...+.-.. ...++.+..++...... ....||.|+.+.-.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 34689999999998544333332 35678888888888776542110 11246666565443222 22579999986643
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEE
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
.. +.++++.+.+.|+|||++.+
T Consensus 99 ~~---~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 99 GL---LQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred hh---HHHHHHHHHHHcCCCCEEEE
Confidence 33 34899999999999999984
No 206
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.25 E-value=0.0058 Score=54.81 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=66.3
Q ss_pred cCCCceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
....+++++|+|+|..........| ....+.+ .+.+++...++-. ....+++...++..+.. ...+|.|++...
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D-~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~~~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILN-LPGAIDLVNENAAEKGVADRMRGIAVDIYKES--YPEADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEe-cHHHHHHHHHHHHhCCccceEEEEecCccCCC--CCCCCEEEeEhh
Confidence 4567899999999985443333334 3344444 4777766544211 12235777777754321 234798887665
Q ss_pred ccchhh--HHHHHHHHhhccCCCcEEEEecc
Q 020270 232 GEYYED--LREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 232 ~e~~~~--l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
...|.+ ...+++++++.|+|||++.+..-
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 555533 35799999999999999998743
No 207
>PHA03411 putative methyltransferase; Provisional
Probab=97.23 E-value=0.0088 Score=52.09 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=95.1
Q ss_pred hccchHHHHHHHHh-hcCCCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc
Q 020270 140 AWEKPLMEAHAKAI-CSGGGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL 217 (328)
Q Consensus 140 ~~~tpL~~a~~~~~-~~~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~ 217 (328)
...||-..+..... .....+||++|+|.|...... .........+++.++.+++...++- +.+.+..++..+..
T Consensus 47 ~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~ 122 (279)
T PHA03411 47 AFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFE 122 (279)
T ss_pred eEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhc
Confidence 33477666533211 123468999999999843322 2222457788999999999887642 35666667655543
Q ss_pred cCCCCCCEEEEecC-----ccchhh---------------HHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhH-HH
Q 020270 218 SQLESYDGIFFDTY-----GEYYED---------------LREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCH-LV 276 (328)
Q Consensus 218 ~~~~~fD~i~~d~f-----~e~~~~---------------l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~-~~ 276 (328)
. ...||.|..+.- ++.+.+ +.+++..+..+|+|+|++-+. =..++.+|..... --
T Consensus 123 ~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~~y~~sl~~~~y 198 (279)
T PHA03411 123 S-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRPYYDGTMKSNKY 198 (279)
T ss_pred c-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---EeccccccccCCHHHH
Confidence 2 246999988653 111111 356777788899999966543 1122333333332 55
Q ss_pred HHHHHhcCCeEEEEEeeCCCCCCcccccccc
Q 020270 277 SLELENLGFSMQLIPLPVKNCLGEEVWEGVK 307 (328)
Q Consensus 277 ~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~ 307 (328)
+..|++.||..+. -.-|..+.=-+.|.|+.
T Consensus 199 ~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~ 228 (279)
T PHA03411 199 LKWSKQTGLVTYA-GCGIDTSIYRDEWHSTN 228 (279)
T ss_pred HHHHHhcCcEecC-CCCcccceehhhccCCC
Confidence 6689999997432 33343344456788774
No 208
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.21 E-value=0.0019 Score=54.63 Aligned_cols=99 Identities=25% Similarity=0.328 Sum_probs=66.1
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+..+|++|+|+|........ ......+++|.++++++...++-.. ...++.+..++..........||.||.+..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC
Confidence 4567899999999985433222 2234778899999998876653211 123577777775443334467999999776
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
.. ++.+.+.+.|+|||++....
T Consensus 155 ~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc------cchHHHHHhhCCCcEEEEEE
Confidence 43 23345667899999999654
No 209
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.18 E-value=0.0036 Score=53.17 Aligned_cols=102 Identities=19% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCCceeeecccCCcchhHH-------hccCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccCCCCCC
Q 020270 156 GGGHILNIGFGMGLVDTAI-------QQYSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQLESYD 224 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~-------~~~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~~~~fD 224 (328)
.+.++|+++.|+|-+.-.+ .+.++....++.-+|+++..-.+. +..+...+.++.++.+++..+.++||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 3468999999999733211 123345667777999999887654 33344568888888888776666666
Q ss_pred EEEEecC-ccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 225 GIFFDTY-GEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 225 ~i~~d~f-~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
. |.-+| -..|++....+++++|+|||||+|...
T Consensus 180 ~-yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 180 A-YTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred e-EEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4 44455 468888999999999999999999953
No 210
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.17 E-value=0.0006 Score=36.70 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=26.2
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCCCCCc
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSGADVS 31 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~gad~n 31 (328)
++.||||+|+..++.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36799999999999999999999988764
No 211
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.15 E-value=0.0022 Score=53.70 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=73.9
Q ss_pred cCCCceeeecccCCcchh--HHhccCCceEEeeccCHHHHHHHHHc--CCCCCCCeeEEecccchhccCC------CCCC
Q 020270 155 SGGGHILNIGFGMGLVDT--AIQQYSPVTHTILEAHPEVYERMLRT--GWGEKNNVKIIFGRWQDNLSQL------ESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~--~~~~~~~~~~~a~e~~~~~~~~L~~~--g~~~~~~~~~~~g~w~~~~~~~------~~fD 224 (328)
-+.++++|+|.-+|...- +..-...-..++++-+.+..+.-... -+.....+++..|...+.+..+ ++||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 456889999998888332 22222344567777555544443221 1223456677777755544333 5799
Q ss_pred EEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 225 GIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 225 ~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
.+|.|++...|. .+++++.+++++||++.+-|.+...
T Consensus 152 faFvDadK~nY~---~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVDADKDNYS---NYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEccchHHHH---HHHHHHHhhcccccEEEEeccccCC
Confidence 999999988887 8999999999999999998877765
No 212
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.06 E-value=0.0041 Score=55.23 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=69.3
Q ss_pred chHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC--CCCeeEEecccchhccCC
Q 020270 143 KPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE--KNNVKIIFGRWQDNLSQL 220 (328)
Q Consensus 143 tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~--~~~~~~~~g~w~~~~~~~ 220 (328)
|.+...........+.++|++|+|+|+..............+++.++.+++...++.... ...+....+..... .-
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--~~ 223 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--IE 223 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--cC
Confidence 445444333344566899999999998443333333446788889998888776643211 12233333321111 12
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..||.|+.+...+ .+..++.++.++|+|||.+.+
T Consensus 224 ~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 224 GKADVIVANILAE---VIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred CCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEE
Confidence 4799999976543 345889999999999999984
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.03 E-value=0.002 Score=53.85 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=88.2
Q ss_pred cchHHHHHHHHhhc--CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccC
Q 020270 142 EKPLMEAHAKAICS--GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 142 ~tpL~~a~~~~~~~--~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~ 219 (328)
.+|..++..-+... .-++++++|||+|+........ ......+.-...|++...+.|-- -++.......+...
T Consensus 109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y----D~L~~Aea~~Fl~~ 183 (287)
T COG4976 109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY----DTLYVAEAVLFLED 183 (287)
T ss_pred ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch----HHHHHHHHHHHhhh
Confidence 48888775555443 3578999999999954333221 11233344455666666665521 11112222323321
Q ss_pred C--CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchh----HHhhh---HHHHHHHHhcCCe-EEE
Q 020270 220 L--ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFF----HVVYC---HLVSLELENLGFS-MQL 289 (328)
Q Consensus 220 ~--~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~----~~~y~---~~~~~~l~~~G~~-~~~ 289 (328)
. +.||.|---.---+.-++..+|--+.++|+|||.|.|..--+++...| +.-|. ..|+..|.+.||+ ++-
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 1 457776542221223456789999999999999999875444443211 11122 3788899999999 777
Q ss_pred EEeeCCC
Q 020270 290 IPLPVKN 296 (328)
Q Consensus 290 ~~~~~~~ 296 (328)
++..|..
T Consensus 264 ~~ttiR~ 270 (287)
T COG4976 264 EDTTIRR 270 (287)
T ss_pred ecccchh
Confidence 7777743
No 214
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.88 E-value=0.0097 Score=50.08 Aligned_cols=113 Identities=25% Similarity=0.294 Sum_probs=68.2
Q ss_pred chHHHHHHHHhh--cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhc
Q 020270 143 KPLMEAHAKAIC--SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNL 217 (328)
Q Consensus 143 tpL~~a~~~~~~--~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~ 217 (328)
.|.+.|..-... ..+.++|++|.|+|........ +..-..+++|.++++++...++=.. ...++.+..|+.....
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 677766444333 5678999999999984332221 2223567889898888765443100 1237788888755544
Q ss_pred cCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccc
Q 020270 218 SQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGL 261 (328)
Q Consensus 218 ~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~ 261 (328)
+....||.|+..+..+ +.-..+.+.|++||++++.-+.
T Consensus 137 ~~~apfD~I~v~~a~~------~ip~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVP------EIPEALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp GGG-SEEEEEESSBBS------S--HHHHHTEEEEEEEEEEESS
T ss_pred ccCCCcCEEEEeeccc------hHHHHHHHhcCCCcEEEEEEcc
Confidence 4556799999987654 3334566689999999975443
No 215
>PRK00536 speE spermidine synthase; Provisional
Probab=96.86 E-value=0.051 Score=47.28 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=83.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHc-----CCCCCCCeeEEecccchhccC-CCCCCEEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRT-----GWGEKNNVKIIFGRWQDNLSQ-LESYDGIFF 228 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~-----g~~~~~~~~~~~g~w~~~~~~-~~~fD~i~~ 228 (328)
...+++|=+|-|-|...+..-.+. .....++-.+++++...+. ++-.+++++++.. .... .+.||+|..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEEE
Confidence 456889999999888555444443 3677788899999888772 2334677777652 1111 257999999
Q ss_pred e-cCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe-EEEEEeeCC
Q 020270 229 D-TYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS-MQLIPLPVK 295 (328)
Q Consensus 229 d-~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~-~~~~~~~~~ 295 (328)
| +|+ ++|++.+.+.|+|||++++=++-.--.+ +++ ..+...|++ +|. |...-+.|+
T Consensus 146 Ds~~~------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~---~~~-~~i~~~l~~-~F~~v~~y~~~vp 203 (262)
T PRK00536 146 LQEPD------IHKIDGLKRMLKEDGVFISVAKHPLLEH---VSM-QNALKNMGD-FFSIAMPFVAPLR 203 (262)
T ss_pred cCCCC------hHHHHHHHHhcCCCcEEEECCCCcccCH---HHH-HHHHHHHHh-hCCceEEEEecCC
Confidence 9 433 2999999999999999997554222221 122 234445666 688 777777773
No 216
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.86 E-value=0.032 Score=51.76 Aligned_cols=134 Identities=15% Similarity=0.092 Sum_probs=89.0
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC--C-CCeeEEecccchhccC----CCCCCEEEE
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE--K-NNVKIIFGRWQDNLSQ----LESYDGIFF 228 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~--~-~~~~~~~g~w~~~~~~----~~~fD~i~~ 228 (328)
.++++|++++++|...-..........++++.++..++.+.++-... . ..+.++.++..+.+.. -..||.|+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 46789999999998432212223447788999999888876642111 1 2577888886655432 247999999
Q ss_pred ecCc--cch-------hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEe
Q 020270 229 DTYG--EYY-------EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPL 292 (328)
Q Consensus 229 d~f~--e~~-------~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~ 292 (328)
|+-. ..- ..+.++...+.++|+|||.+.+++.-+.... +-+..++......+|-+++-.+.
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~---~~f~~~v~~aa~~~~~~~~~l~~ 369 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS---DLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH---HHHHHHHHHHHHHcCCeEEEEEE
Confidence 9642 111 1234566678999999999998876555543 35566777777788877665554
No 217
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.83 E-value=0.0092 Score=49.75 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=68.7
Q ss_pred cCCCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCC-CCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQL-ESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f 231 (328)
..+..++++|+|+|........ .......+++.++++++.+.++-.. ...++++..++..+....+ ..+|.++.+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~~ 118 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEGG 118 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEECC
Confidence 3557899999999985433322 2335788899999999887653110 1135777777655433332 34788888753
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
. .+..+++++.+.|+|||++.+..
T Consensus 119 -~---~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 119 -R---PIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred -c---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 34589999999999999999764
No 218
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.82 E-value=0.0076 Score=50.91 Aligned_cols=99 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....++|++|+|+|.......... ...++++.++++++.+.++-.. .-.++.+..++..+.......||.|+.+....
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAP 155 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCch
Confidence 456789999999998433222211 2577788888888766543100 11236677776544333346799999987543
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
.+.+.+.+.|+|||++.+.-+
T Consensus 156 ------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 ------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ------hhhHHHHHhcCCCcEEEEEEc
Confidence 334567789999999986544
No 219
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=96.81 E-value=0.015 Score=51.25 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCceeeecccCCcchhHHhcc----CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQY----SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~----~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
....||++|+|.|......... .....++++..+.+++...+.. +++.+..++..+.....++||.|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccCCCcCCceeEEEEecC
Confidence 3467999999999844322221 1235688899999999887643 3456666665555444468999987433
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
+ .+++++.++|+|||++.+..
T Consensus 161 ~-------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 P-------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred C-------CCHHHHHhhccCCCEEEEEe
Confidence 2 34567889999999999764
No 220
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.79 E-value=0.016 Score=50.02 Aligned_cols=118 Identities=23% Similarity=0.352 Sum_probs=69.0
Q ss_pred hhcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHc--CCCCCCCeeEEecccch-hcc-CC-CCCCE
Q 020270 153 ICSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRT--GWGEKNNVKIIFGRWQD-NLS-QL-ESYDG 225 (328)
Q Consensus 153 ~~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~--g~~~~~~~~~~~g~w~~-~~~-~~-~~fD~ 225 (328)
....+.+|+|.|.|.|........ +..-+.+..|-+.+-++...++ .+....++++..++... ... .+ ..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 446788999999999984332221 2233566667777666655442 12234567777776532 221 12 46999
Q ss_pred EEEecCccchhhHHHHHHHHhhcc-CCCcEEEEeccccCCcchhHHhhhHHHHH---HHHhcCCe
Q 020270 226 IFFDTYGEYYEDLREFHQHLPKLL-KPGGIYSYFNGLCGGNAFFHVVYCHLVSL---ELENLGFS 286 (328)
Q Consensus 226 i~~d~f~e~~~~l~~~~~~~~~lL-~~gG~~~~~~~~g~~~~~~~~~y~~~~~~---~l~~~G~~ 286 (328)
||.|- |+.|. ...++.+.| ++||++.+|+- .-..+++ .|++.||.
T Consensus 117 vfLDl-p~Pw~----~i~~~~~~L~~~gG~i~~fsP-----------~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 117 VFLDL-PDPWE----AIPHAKRALKKPGGRICCFSP-----------CIEQVQKTVEALREHGFT 165 (247)
T ss_dssp EEEES-SSGGG----GHHHHHHHE-EEEEEEEEEES-----------SHHHHHHHHHHHHHTTEE
T ss_pred EEEeC-CCHHH----HHHHHHHHHhcCCceEEEECC-----------CHHHHHHHHHHHHHCCCe
Confidence 99986 68885 456777789 89999996543 1123333 68889987
No 221
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.77 E-value=0.018 Score=49.87 Aligned_cols=121 Identities=24% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecCc-
Q 020270 156 GGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTYG- 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~- 232 (328)
....++++|+|.|......... ......+++.++..++....+-.. ...++.+..+++.+.. ...+||.|+.+.--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL-PGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC-cCCceeEEEECCCCC
Confidence 4458999999999844333332 334677888888888877553111 1124777777775533 23579999875310
Q ss_pred ---------------c----------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 233 ---------------E----------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 233 ---------------e----------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+ .....+.+++++.++|+|||++.+-.+.. . ...++..|+..||.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~--------~-~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD--------Q-GEAVRALFEAAGFA 235 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc--------H-HHHHHHHHHhCCCC
Confidence 0 01223478889999999999999754321 1 12345567889987
No 222
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.76 E-value=0.011 Score=48.46 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=77.5
Q ss_pred hhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEEEEec
Q 020270 153 ICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGIFFDT 230 (328)
Q Consensus 153 ~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i~~d~ 230 (328)
..+.+.+||++|||.|.............-..+|-+++.+...+++| +.++.++..+-+... .+||.|....
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG------v~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG------VSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC------CCEEECCHHHhHhhCCCCCccEEehHh
Confidence 44677899999999999666666666778899999999999899888 778888887766443 6899988866
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
.-+.......+++++.|+-+ .++.||-|.
T Consensus 84 tLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 84 TLQAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred HHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 65666666788888877755 456666443
No 223
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0092 Score=49.63 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=71.5
Q ss_pred chHHHHHHHH--hhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHH----HHcCCCCCCCeeEEecccchh
Q 020270 143 KPLMEAHAKA--ICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERM----LRTGWGEKNNVKIIFGRWQDN 216 (328)
Q Consensus 143 tpL~~a~~~~--~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L----~~~g~~~~~~~~~~~g~w~~~ 216 (328)
.|-|.|..-. ....+.++||+|.|.|........ -.-+-+++|..++.++.. ...|+. ++.+..|+-..-
T Consensus 57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~---nV~v~~gDG~~G 132 (209)
T COG2518 57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYE---NVTVRHGDGSKG 132 (209)
T ss_pred CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCC---ceEEEECCcccC
Confidence 5666653333 336678999999999984322222 122677888887766664 444542 377777775444
Q ss_pred ccCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 217 LSQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 217 ~~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
.+....||.|+..+...... +.+.+.|++||++++.-|
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 45556799999988755333 344557999999998877
No 224
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.73 E-value=0.012 Score=50.50 Aligned_cols=125 Identities=24% Similarity=0.303 Sum_probs=84.8
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCC--CCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQL--ESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~--~~fD~i~~d 229 (328)
...++|+++|+|.|+..-..... ......++|-.++.++...++=.. -...++++.++..+..... .+||.|..+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 44789999999999965555555 458899999999888887764221 2357778888866555443 469999776
Q ss_pred cC-----c-------------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHH--HHHhcCCeEEE
Q 020270 230 TY-----G-------------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSL--ELENLGFSMQL 289 (328)
Q Consensus 230 ~f-----~-------------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~--~l~~~G~~~~~ 289 (328)
+= . +-...+.++.+....+||+||.+++.+--. +.++. .|+..+|....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------rl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------RLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------HHHHHHHHHHhcCCCceE
Confidence 53 1 111235688888999999999999754321 13333 57777777444
Q ss_pred E
Q 020270 290 I 290 (328)
Q Consensus 290 ~ 290 (328)
.
T Consensus 192 i 192 (248)
T COG4123 192 I 192 (248)
T ss_pred E
Confidence 3
No 225
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.71 E-value=0.015 Score=54.67 Aligned_cols=106 Identities=23% Similarity=0.281 Sum_probs=68.7
Q ss_pred hcCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhcc--CCCCCCEEEEec
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLS--QLESYDGIFFDT 230 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~--~~~~fD~i~~d~ 230 (328)
...+..||++|+|.|......... ......+++.++..++.+.++-......+++..++..+... ...+||.|+.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 345678999999999844333222 22577888999999888866421112235566666544321 124699999887
Q ss_pred C-c---------c-ch----hh-------HHHHHHHHhhccCCCcEEEEec
Q 020270 231 Y-G---------E-YY----ED-------LREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 231 f-~---------e-~~----~~-------l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
- + + .| ++ .+.+++.+.++|+|||++++.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 3 1 1 12 11 2468889999999999999764
No 226
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.70 E-value=0.019 Score=50.54 Aligned_cols=122 Identities=23% Similarity=0.317 Sum_probs=78.7
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCC-CCCCCeeEEecccchhccCCCCCCEEEEecC-
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGW-GEKNNVKIIFGRWQDNLSQLESYDGIFFDTY- 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~-~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f- 231 (328)
.....++++|+|.|......... .....++++.++..++.+.++-. ....++.+..+++..... ...||.|+.+.-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-GGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-CCceeEEEECCCc
Confidence 34568999999999844333322 34567888899988888776522 223467777777643322 246999987531
Q ss_pred -c------------------------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 232 -G------------------------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 232 -~------------------------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+ ......+.+++++.++|+|||++.+-.+... ...++..|++.||.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~---------~~~~~~~l~~~gf~ 256 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQ---------GEAVRALLAAAGFA 256 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchH---------HHHHHHHHHhCCCc
Confidence 0 0122345778888899999999997553211 12355577889997
No 227
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0067 Score=50.35 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=70.7
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.....+.++|||.|......... .-....++.-.++|++...+.. ++.++..++..+..+. ..+|.||.++.-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~-~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPE-QPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCC-Cccchhhhhhhhh
Confidence 44578999999999855544443 3456677888999999887755 5566666664433332 2478888877632
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
=..+..++|.++...|.|||++..-
T Consensus 104 WlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 104 WLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hccccHHHHHHHHHhhCCCceEEEE
Confidence 2256668999999999999999964
No 228
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.67 E-value=0.0012 Score=60.73 Aligned_cols=42 Identities=33% Similarity=0.313 Sum_probs=40.0
Q ss_pred hhHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAA 45 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa 45 (328)
-.|+||+|+.+|+..+|.+||+.|+|+..+|..|.||..+++
T Consensus 430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 369999999999999999999999999999999999999887
No 229
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.66 E-value=0.014 Score=58.47 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC--C-CCeeEEecccchhccCC-CCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE--K-NNVKIIFGRWQDNLSQL-ESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~--~-~~~~~~~g~w~~~~~~~-~~fD~i~~d~f 231 (328)
.++++|++++++|..............++++.++..++...++-... . ..++++.++..+.+... ..||.|+.|+=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 46789999999999443333333446788888888888776642111 1 35778888855544322 47999999863
Q ss_pred c--------cc---hhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEE
Q 020270 232 G--------EY---YEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIP 291 (328)
Q Consensus 232 ~--------e~---~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~ 291 (328)
. .. -.+..+++..+.++|+|||.+.+.+........ ...+.++|+.++-.+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---------~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---------EEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---------HHHHHhCCCeEEEEe
Confidence 1 11 123457788899999999999877654433221 456778898865433
No 230
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.64 E-value=0.034 Score=47.42 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....||++|+|.|.......... ....+++..+.+++...+.-.... ..+.+..+++.. ...+||.|+......
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~-~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhh
Confidence 45689999999998544333333 358888889988887766422111 355666565432 235799998754434
Q ss_pred chh--hHHHHHHHHhhccCCCcEEEE
Q 020270 234 YYE--DLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 234 ~~~--~l~~~~~~~~~lL~~gG~~~~ 257 (328)
++. ++...++.+.++++.++++++
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 443 456788888887766666654
No 231
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.60 E-value=0.0019 Score=53.87 Aligned_cols=123 Identities=23% Similarity=0.318 Sum_probs=75.4
Q ss_pred CceeeecccCCcchh-HHhccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccC---CCCCCEEEEecCc
Q 020270 158 GHILNIGFGMGLVDT-AIQQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQ---LESYDGIFFDTYG 232 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~-~~~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~---~~~fD~i~~d~f~ 232 (328)
.-++|+|||.|-... .-.......+.++|.+...+....+.-.. .-.++.++.++....+.. -+++|.||. .||
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i-~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI-NFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE-ES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE-eCC
Confidence 368999999998322 22334557889999888777665543211 246888888875553322 257888888 677
Q ss_pred cchhhH---------HHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHh--cCCeEEE
Q 020270 233 EYYEDL---------REFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELEN--LGFSMQL 289 (328)
Q Consensus 233 e~~~~l---------~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~--~G~~~~~ 289 (328)
..|..- .+|++.+.+.|+|||.+.+.+- ++.|..-+...+.+ .+|....
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD--------~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD--------VEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC--------CHHHHHHHHHHHHhcCcCeEEcc
Confidence 777442 3899999999999999986432 22455555555666 4777543
No 232
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.56 E-value=0.011 Score=47.56 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=53.0
Q ss_pred eccCHHHHHHHHHcC----CCCCCCeeEEecccchhccCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 185 LEAHPEVYERMLRTG----WGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 185 ~e~~~~~~~~L~~~g----~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
++-.+++++...+.. .....+++...++..+.....++||.|+...-...+.+..++++++.++|||||.+.+.
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 344566776654321 11123578888888777665568999988544455678889999999999999999865
No 233
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.56 E-value=0.032 Score=50.62 Aligned_cols=128 Identities=13% Similarity=-0.021 Sum_probs=82.8
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccCCCCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
..+..+++.++|+|...... ........+++.++.+++....+ |.. ++.+..++..+.......||.|..|+
T Consensus 181 ~~g~~vLDp~cGtG~~liea-a~~~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l~~~~~~~D~Iv~dP 256 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEA-GLMGAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKLPLSSESVDAIATDP 256 (329)
T ss_pred CCcCEEEECCCCCCHHHHHH-HHhCCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcCCcccCCCCEEEECC
Confidence 45668999999999843211 12244677888899888765442 322 25666676665443346799999984
Q ss_pred C-------ccc-h-hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCC
Q 020270 231 Y-------GEY-Y-EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNC 297 (328)
Q Consensus 231 f-------~e~-~-~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~ 297 (328)
- ... . ....++++++.+.|+|||++++...-.. -.+..++.+||-++..++.|.+|
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~i~~~~~~~~h~s 321 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFRVVKRFEVRVHRS 321 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCcchheeeeeeecc
Confidence 2 111 1 2246899999999999999997643221 12345888999555666667554
No 234
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.54 E-value=0.039 Score=46.07 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=62.6
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecc-cchhccCCCCCCEEEEecC----
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGR-WQDNLSQLESYDGIFFDTY---- 231 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~-w~~~~~~~~~fD~i~~d~f---- 231 (328)
..-||++|||+|+......... ...+.+...|.|++..++.... -. ++.++ -+-+.+...+||++..-..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e--gd--lil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE--GD--LILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh--cC--eeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 4669999999999654333322 4566788999999998873322 11 11122 2445555577888655333
Q ss_pred ----cc---chhhHHHHHHHHhhccCCCcEEEE
Q 020270 232 ----GE---YYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 232 ----~e---~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
++ .-..+..||..++..|++|++.++
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 22 123567899999999999988884
No 235
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.54 E-value=0.026 Score=47.60 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=63.8
Q ss_pred hcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc--------cCCCCC
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL--------SQLESY 223 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~--------~~~~~f 223 (328)
...+..||++|+|+|........ .......+++..+ + ...+++.++.++..+.. ....+|
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 35567899999999985432222 2234677777555 1 11245778878766532 223579
Q ss_pred CEEEEecCccch----hh-------HHHHHHHHhhccCCCcEEEEecccc
Q 020270 224 DGIFFDTYGEYY----ED-------LREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 224 D~i~~d~f~e~~----~~-------l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
|.|..|..|... .+ +..+++.+.++|+|||+|++-...+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 999998754221 11 2467889999999999999754433
No 236
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.53 E-value=0.021 Score=49.57 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=78.1
Q ss_pred CceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccC--CCCCCEEEEecC--c
Q 020270 158 GHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQ--LESYDGIFFDTY--G 232 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~--~~~fD~i~~d~f--~ 232 (328)
..++++|+|.|........ .......+++.+++.++...++-.. .+.++..+++.+.... ...||.|++|.- +
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~--~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD--AGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 4799999999984433222 2224567889999999887764211 1245667776554322 146999999862 1
Q ss_pred c------------------------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 233 E------------------------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 233 e------------------------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
. ..+.++.+++.+.++|+|||++.+.++.... ..+...|+..||..+
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---------~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---------PLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH---------HHHHHHHHHCCCCce
Confidence 1 0112457777888999999999977653221 123445788999855
Q ss_pred EEE
Q 020270 289 LIP 291 (328)
Q Consensus 289 ~~~ 291 (328)
...
T Consensus 237 ~~~ 239 (251)
T TIGR03704 237 VAS 239 (251)
T ss_pred eeE
Confidence 443
No 237
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.51 E-value=0.023 Score=49.74 Aligned_cols=127 Identities=17% Similarity=0.070 Sum_probs=78.6
Q ss_pred hcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEec
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
...+..||++|+|.|........ ......++++.++..++.+.++-... -.++.+..++..........||.|+.|+
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35667899999999984432221 12236788899998888776531111 1246666666554433335699999986
Q ss_pred Cc----------cc---hh---------hHHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhhhHHHHHHHHhc-CCe
Q 020270 231 YG----------EY---YE---------DLREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVYCHLVSLELENL-GFS 286 (328)
Q Consensus 231 f~----------e~---~~---------~l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y~~~~~~~l~~~-G~~ 286 (328)
-. +. |. ..+++++.+.++|+|||+++|.+ .+... --..+++..|+.. +|.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~------Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE------ENEAVVDYLLEKRPDVV 222 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH------HHHHHHHHHHHhCCCcE
Confidence 31 10 11 12468889999999999999763 33222 1234777777763 554
No 238
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.48 E-value=0.045 Score=48.50 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=79.2
Q ss_pred CCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCCCCEEEEecC-
Q 020270 156 GGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLESYDGIFFDTY- 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f- 231 (328)
....++++|+|.|......... .....++++.+++.++...++-.. ...++.+..+++.+.+. ...||.|+.+.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-GRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC-CCCccEEEECCCC
Confidence 3468999999999854433332 235678889999998887764211 12357777787644332 236999998731
Q ss_pred ---------c---------------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeE
Q 020270 232 ---------G---------------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSM 287 (328)
Q Consensus 232 ---------~---------------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~ 287 (328)
+ ..++..+.++..+.+.|+|||++.+-.+. +. ..++..+.+.||..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------~~--~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------SM--EALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------CH--HHHHHHHHhCCCce
Confidence 0 01123467888899999999999975552 11 24555677888763
No 239
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.043 Score=48.45 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=87.8
Q ss_pred cchHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc-cCC
Q 020270 142 EKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL-SQL 220 (328)
Q Consensus 142 ~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~-~~~ 220 (328)
.|-+.+-........++.+|++|+|.|+..-......+..-.++.-.|.-++.-.++-.-...........+.... ...
T Consensus 148 TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~ 227 (300)
T COG2264 148 TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPEN 227 (300)
T ss_pred hHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhccc
Confidence 3777666666677789999999999999554444444555677777777777665532111111001111111111 111
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEE
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
..||+|.-+-..+. +..+...+.++++|||++. .+| ..+.+...|...+...||.++-
T Consensus 228 ~~~DvIVANILA~v---l~~La~~~~~~lkpgg~lI-lSG-------Il~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 228 GPFDVIVANILAEV---LVELAPDIKRLLKPGGRLI-LSG-------ILEDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred CcccEEEehhhHHH---HHHHHHHHHHHcCCCceEE-EEe-------ehHhHHHHHHHHHHhCCCeEeE
Confidence 47999998776553 4588889999999999998 444 3344566788889999999543
No 240
>PRK06202 hypothetical protein; Provisional
Probab=96.45 E-value=0.041 Score=47.17 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCceeeecccCCcchhHHh-----ccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEec
Q 020270 156 GGGHILNIGFGMGLVDTAIQ-----QYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~-----~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
...+|+++|+|+|....... .+......+++.++++++...+... ..+++..............+||.|+...
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEecccccccCCCccEEEECC
Confidence 45689999999997432221 1234578899999999998877532 2233333332222222235799999976
Q ss_pred Cccchhh--HHHHHHHHhhccC
Q 020270 231 YGEYYED--LREFHQHLPKLLK 250 (328)
Q Consensus 231 f~e~~~~--l~~~~~~~~~lL~ 250 (328)
.-.+..+ +..+++++.++++
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC
Confidence 5455543 5689999999987
No 241
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.42 E-value=0.047 Score=48.82 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCceeeecccCCcchhHHhcc--CCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCC----CCEEE
Q 020270 156 GGGHILNIGFGMGLVDTAIQQY--SPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLES----YDGIF 227 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~--~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~----fD~i~ 227 (328)
.+..||++|+|+|......-.. .+..+++++-.+++++...+.-.. +...+..+.++..+....... ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4567999999999844322222 257789999999998777654211 223455566665443222222 23344
Q ss_pred EecCc---cchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 228 FDTYG---EYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 228 ~d~f~---e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+-..+ ..-++...+++++.+.|+|||+|.+-
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 43222 12345678999999999999999864
No 242
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.38 E-value=0.054 Score=45.47 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=63.5
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
....+||++|||+|......... ......+++.++++++...+.. +.+.+..+...+ .....+||.|+....-.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 35568999999999955444333 3457889999999999987743 234555666554 33346799999877644
Q ss_pred ch--hhHHHHHHHHhhccC
Q 020270 234 YY--EDLREFHQHLPKLLK 250 (328)
Q Consensus 234 ~~--~~l~~~~~~~~~lL~ 250 (328)
+. +++..+++++.++++
T Consensus 117 hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCSN 135 (204)
T ss_pred hCCHHHHHHHHHHHHhhcC
Confidence 54 356688888888874
No 243
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.35 E-value=0.012 Score=49.77 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=66.5
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~~~fD~i~~d~f~ 232 (328)
++.+.++++|+|.|........+ +-..++..-+..+++.+.++.-... ...++....-.+++..-++.|+|-.- -.
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A-qa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA-QA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhh-hh
Confidence 44558999999999644333333 4456777789999998776542211 12222212222333223678887663 34
Q ss_pred cchhhHHHHHHHHhhccCC-CcEEEEecc
Q 020270 233 EYYEDLREFHQHLPKLLKP-GGIYSYFNG 260 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~-gG~~~~~~~ 260 (328)
-||-++.+|++.+.++||+ ||.+.+++=
T Consensus 110 ~HWFdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 110 VHWFDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred HHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 6999999999999999985 558887643
No 244
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.34 E-value=0.06 Score=48.47 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=69.2
Q ss_pred chHHHHHHHHh--hcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHH----cCCCCCCCeeEEecccc
Q 020270 143 KPLMEAHAKAI--CSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLR----TGWGEKNNVKIIFGRWQ 214 (328)
Q Consensus 143 tpL~~a~~~~~--~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~----~g~~~~~~~~~~~g~w~ 214 (328)
.|.+.+..... ...+..+|++|+|+|........ ......++++.++++++...+ .|. .++.+..++..
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChh
Confidence 45555533222 24567899999999984332222 112346788999988876654 342 34677777765
Q ss_pred hhccCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 215 DNLSQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 215 ~~~~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
........||.|+.+.... ++.+.+.+.|+|||++.+..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVD------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchH------HhHHHHHHhcCCCCEEEEEe
Confidence 5554446799999875422 34455678999999988753
No 245
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.32 E-value=0.03 Score=52.72 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=77.0
Q ss_pred hcCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhcc--CCCCCCEE
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLS--QLESYDGI 226 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~--~~~~fD~i 226 (328)
...+..||++|+|.|......... .....++++.+++.++.+.++ |.. ..+....++...... ...+||.|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccccccccCEE
Confidence 355678999999999744322221 245788888888888776553 322 223334444332221 23569999
Q ss_pred EEecC----------cc-ch-----------hhHHHHHHHHhhccCCCcEEEEe-ccccCCcchhHHhhhHHHHHHHHhc
Q 020270 227 FFDTY----------GE-YY-----------EDLREFHQHLPKLLKPGGIYSYF-NGLCGGNAFFHVVYCHLVSLELENL 283 (328)
Q Consensus 227 ~~d~f----------~e-~~-----------~~l~~~~~~~~~lL~~gG~~~~~-~~~g~~~~~~~~~y~~~~~~~l~~~ 283 (328)
+.|+- |+ .| ...++++.++.++|||||++++. |.+.+. -...+++.-|+..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~------Ene~~v~~~l~~~ 387 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE------ENSEQIKAFLQEH 387 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh------hCHHHHHHHHHhC
Confidence 99853 11 01 01257888999999999999986 444332 1123556666654
Q ss_pred -CCeEEE
Q 020270 284 -GFSMQL 289 (328)
Q Consensus 284 -G~~~~~ 289 (328)
+|.+++
T Consensus 388 ~~~~~~~ 394 (426)
T TIGR00563 388 PDFPFEK 394 (426)
T ss_pred CCCeecc
Confidence 565544
No 246
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.23 E-value=0.03 Score=50.91 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecC----
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY---- 231 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f---- 231 (328)
..++|++|+|.|..........| ....+++.++.+++...++-.......++..++..... .+.||.|+.+.-
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDI--KGRFDMIISNPPFHDG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccccc--CCCccEEEECCCccCC
Confidence 35799999999985544333333 56788888888887765421111122333333321111 257999998751
Q ss_pred -ccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 232 -GEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 232 -~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
...+.....++..+.+.|+|||.+.+.
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 123456679999999999999999864
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.23 E-value=0.1 Score=46.93 Aligned_cols=141 Identities=19% Similarity=0.274 Sum_probs=98.7
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHH--------HcCCCCCCCeeEEecccchhccC-CCCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERML--------RTGWGEKNNVKIIFGRWQDNLSQ-LESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~--------~~g~~~~~~~~~~~g~w~~~~~~-~~~fD 224 (328)
.+.+++|-+|-|-|+..+....+. .-+.+-++-.|.|++... +.|.-.+++++++..+....+.. -+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 455789999999999665444443 334455678898888765 23445578888877663333322 24799
Q ss_pred EEEEecC-------ccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCC
Q 020270 225 GIFFDTY-------GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNC 297 (328)
Q Consensus 225 ~i~~d~f-------~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~ 297 (328)
.|.-|-- .-.|+. +|+.-+.+.|+++|++++-.+-.=..+. +||++ ...++++|+.+-..-|.||.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~--eFY~ll~~~l~e~Gl~VvQags~y~tp~---vfw~i-~aTik~AG~~~~Pyhv~VPT- 440 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSV--EFYRLLSRHLAETGLMVVQAGSPYFTPR---VFWRI-DATIKSAGYRVWPYHVHVPT- 440 (508)
T ss_pred EEEEeCCCCCCcchhhhhhH--HHHHHHHHhcCcCceEEEecCCCccCCc---eeeee-hhHHHhCcceeeeeEEecCc-
Confidence 9988765 234555 9999999999999999986665555555 66663 34689999999999999954
Q ss_pred CCccccc
Q 020270 298 LGEEVWE 304 (328)
Q Consensus 298 ~~~~~w~ 304 (328)
- ++|-
T Consensus 441 F--GeWG 445 (508)
T COG4262 441 F--GEWG 445 (508)
T ss_pred c--cccc
Confidence 2 4563
No 248
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.22 E-value=0.072 Score=50.41 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=78.3
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCC-CCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQL-ESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~-~~fD~i~~d~ 230 (328)
..+..++++|+|.|........ +.....++++-+++.++.+.++-... -.++.+..++.......+ ..||.|+.|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 4567899999999984432222 23457888888888887775532111 123777777765543222 5799999986
Q ss_pred Cc----------c-ch----hh-------HHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhhhHHHHHHHHhcC-Ce
Q 020270 231 YG----------E-YY----ED-------LREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVYCHLVSLELENLG-FS 286 (328)
Q Consensus 231 f~----------e-~~----~~-------l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y~~~~~~~l~~~G-~~ 286 (328)
-. + .| .+ .+++++.+.++|+|||++++.+ .+... -...+++..|++.+ |+
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~------Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE------ENEEVIEAFLEEHPEFE 402 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh------hhHHHHHHHHHhCCCcE
Confidence 31 0 01 11 1468889999999999999753 22222 22346666676653 54
No 249
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.20 E-value=0.063 Score=48.13 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=76.6
Q ss_pred CceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCCCCEEEEec-C--
Q 020270 158 GHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLESYDGIFFDT-Y-- 231 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~fD~i~~d~-f-- 231 (328)
..++++|+|.|.......... ....++++-+++.++...++-.. ....+.+..+++.+.++. .+||.|..+. |
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPG-RRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCC-CCccEEEECCCCCC
Confidence 679999999999544333333 35677888999999887765321 123577888886544332 4699999873 1
Q ss_pred -------c---------------cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 232 -------G---------------EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 232 -------~---------------e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+ ......+.++..+.+.|+|||++.+-.+.. ...++..+...||.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~ 280 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFT 280 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCE
Confidence 0 011224578889999999999999755432 11244456666654
No 250
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.18 E-value=0.12 Score=46.40 Aligned_cols=134 Identities=12% Similarity=0.039 Sum_probs=77.1
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC------CCCeeEEecccchhccCCCCCCEEEEe
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE------KNNVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~------~~~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
.+.+||++|+|+|......... -....+++..+.+++...++.... ...+.+..+++... ...||.|+.-
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 3568999999999844333322 246788889999988876643111 12344544554332 2569988753
Q ss_pred cCccchhh--HHHHHHHHhhccCCCcEEEEeccccC---------------C-cchhHHhhhHHHHHHHHhcCCeEEEEE
Q 020270 230 TYGEYYED--LREFHQHLPKLLKPGGIYSYFNGLCG---------------G-NAFFHVVYCHLVSLELENLGFSMQLIP 291 (328)
Q Consensus 230 ~f~e~~~~--l~~~~~~~~~lL~~gG~~~~~~~~g~---------------~-~~~~~~~y~~~~~~~l~~~G~~~~~~~ 291 (328)
..-.++.+ ...+++.+..+ .+||.+..+..... . ....|-.-...++..|+++||+|...+
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~l-~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLASL-AEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CEEEecCHHHHHHHHHHHHhh-cCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 33344533 34566666654 56666665432110 0 001110012367779999999998877
Q ss_pred eeC
Q 020270 292 LPV 294 (328)
Q Consensus 292 ~~~ 294 (328)
+.-
T Consensus 299 ~~~ 301 (315)
T PLN02585 299 MTA 301 (315)
T ss_pred Eee
Confidence 655
No 251
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.13 E-value=0.019 Score=50.84 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=85.0
Q ss_pred chHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCC
Q 020270 143 KPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQL 220 (328)
Q Consensus 143 tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~ 220 (328)
|-|.+.........+.++|++|+|+|+..-.-..-..-.-.++.-.|..++...++-.... ..+... . -.+...
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~-~~~~~~-- 223 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-L-SEDLVE-- 223 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-C-TSCTCC--
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-E-eccccc--
Confidence 6777776666777788999999999994433333344466788888877777655421111 133221 1 111111
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCc
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGE 300 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 300 (328)
..||.|.-+-..+ -+..+...+.++|+|||.+.. +|+=... ...+...+++ ||.+..+. .+
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIl-SGIl~~~-------~~~v~~a~~~-g~~~~~~~-------~~ 284 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLIL-SGILEEQ-------EDEVIEAYKQ-GFELVEER-------EE 284 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEE-EEEEGGG-------HHHHHHHHHT-TEEEEEEE-------EE
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEE-ccccHHH-------HHHHHHHHHC-CCEEEEEE-------EE
Confidence 5799999877644 355788889999999999994 4433322 2244456666 99953332 24
Q ss_pred cccccc
Q 020270 301 EVWEGV 306 (328)
Q Consensus 301 ~~w~~~ 306 (328)
+.|-.+
T Consensus 285 ~~W~~l 290 (295)
T PF06325_consen 285 GEWVAL 290 (295)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 567554
No 252
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.13 Score=45.40 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=81.7
Q ss_pred ceeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhccCCCCCCEEEEecC--cc-
Q 020270 159 HILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLSQLESYDGIFFDTY--GE- 233 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~~~~~fD~i~~d~f--~e- 233 (328)
.++++|+|+|+.........+ ....+..-+++.++...++-.... .++....++|.+.+.. .||.|.+++= |.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--ceeEEEeCCCCCCCc
Confidence 799999999996655455444 588888899998888766432222 3455555676665554 6999888654 11
Q ss_pred ----------------------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCC
Q 020270 234 ----------------------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGF 285 (328)
Q Consensus 234 ----------------------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~ 285 (328)
.++..+.|...+.+.|+|||.+.+.+|.+... .++-.+.+.|+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~---------~v~~~~~~~~~ 255 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGE---------AVKALFEDTGF 255 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHH---------HHHHHHHhcCC
Confidence 22334678888999999999999988876643 34556888885
No 253
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.99 E-value=0.048 Score=51.44 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=77.1
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhcc----CCCCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLS----QLESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~----~~~~fD 224 (328)
..+..||++|+|.|........ ......++++-++..++.+.++ |. .++.+..++...... ..+.||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccccccccCC
Confidence 4567899999999984432222 2234678888888888777553 32 246666666554431 124799
Q ss_pred EEEEecC----------cc-chh-----------hHHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhhhHHHHHHHH
Q 020270 225 GIFFDTY----------GE-YYE-----------DLREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVYCHLVSLELE 281 (328)
Q Consensus 225 ~i~~d~f----------~e-~~~-----------~l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y~~~~~~~l~ 281 (328)
.|+.|+- |+ .|. ..+++++.+.++|||||+++|.+ .+-+. -...+++..|+
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~------Ene~~v~~~l~ 401 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA------ENEAQIEQFLA 401 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh------hHHHHHHHHHH
Confidence 9999863 11 110 13588889999999999998753 22221 11235666676
Q ss_pred hc-CCe
Q 020270 282 NL-GFS 286 (328)
Q Consensus 282 ~~-G~~ 286 (328)
+- +|.
T Consensus 402 ~~~~~~ 407 (434)
T PRK14901 402 RHPDWK 407 (434)
T ss_pred hCCCcE
Confidence 64 454
No 254
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.95 E-value=0.052 Score=51.12 Aligned_cols=127 Identities=17% Similarity=0.077 Sum_probs=78.4
Q ss_pred hcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhcc-CCCCCCEEEEe
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLS-QLESYDGIFFD 229 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~-~~~~fD~i~~d 229 (328)
...+..||++|+|+|........ +.....++++.++..++.+.++-.... .++.+..++...... ..+.||.|+.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 35667899999999974332222 234578888899988888765421111 235666666554431 12469999998
Q ss_pred cCcc--c-h-------------------hhHHHHHHHHhhccCCCcEEEEe-ccccCCcchhHHhhhHHHHHHHHh-cCC
Q 020270 230 TYGE--Y-Y-------------------EDLREFHQHLPKLLKPGGIYSYF-NGLCGGNAFFHVVYCHLVSLELEN-LGF 285 (328)
Q Consensus 230 ~f~e--~-~-------------------~~l~~~~~~~~~lL~~gG~~~~~-~~~g~~~~~~~~~y~~~~~~~l~~-~G~ 285 (328)
+-.. . + ...++++..+.+.|+|||+++|. |.+... =...+++.-|+. -+|
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e------Ene~vv~~fl~~~~~~ 388 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE------ENTEVVKRFVYEQKDA 388 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh------hCHHHHHHHHHhCCCc
Confidence 7521 1 0 11256788899999999999975 333222 123466666654 455
Q ss_pred e
Q 020270 286 S 286 (328)
Q Consensus 286 ~ 286 (328)
.
T Consensus 389 ~ 389 (431)
T PRK14903 389 E 389 (431)
T ss_pred E
Confidence 5
No 255
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=95.92 E-value=0.056 Score=44.54 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc--
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY-- 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~-- 234 (328)
..+.+|+|++.|......... --...++...+.-++...+.=.+ .+++.+.........+. +.||.|..-..--.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-~~~V~~~~~dvp~~~P~-~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-LPHVEWIQADVPEFWPE-GRFDLIVLSEVLYYLD 120 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT---S-S-EEEEEEES-GGGSS
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-CCCeEEEECcCCCCCCC-CCeeEEEEehHhHcCC
Confidence 467999999999965444333 24677788888888888775433 36788877775544333 57999988665322
Q ss_pred -hhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 235 -YEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 235 -~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
.++++.+.+.+.+.|+|||.+++-+.
T Consensus 121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 121 DAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 24678899999999999999998665
No 256
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=95.87 E-value=0.13 Score=43.51 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=63.9
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHH-cCCC------------CCCCeeEEecccchhccC-CC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLR-TGWG------------EKNNVKIIFGRWQDNLSQ-LE 221 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~-~g~~------------~~~~~~~~~g~w~~~~~~-~~ 221 (328)
.+.++|..|||.|-....... .-..-.+++..+..++.+.+ ++.. ....+++..++..+.... ..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 457999999999974333322 34467888888988887543 3322 123566666665444332 24
Q ss_pred CCCEEEEecCcc--chhhHHHHHHHHhhccCCCcEEEE
Q 020270 222 SYDGIFFDTYGE--YYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 222 ~fD~i~~d~f~e--~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
.||.||--++-- .-+....+++.+.++|+|||++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 688887644311 123345799999999999997443
No 257
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.77 E-value=0.039 Score=47.57 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=75.8
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
.....|+++|.|.|..........|-..+++-.-|++++...+ ..+++...|++.+.++. +|++++--.-..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-----~~rv~~~~gd~f~~~P~---~D~~~l~~vLh~ 170 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-----ADRVEFVPGDFFDPLPV---ADVYLLRHVLHD 170 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-----TTTEEEEES-TTTCCSS---ESEEEEESSGGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-----ccccccccccHHhhhcc---ccceeeehhhhh
Confidence 4567899999999996665666667777777788999988887 56899999987644443 899999777666
Q ss_pred hh--hHHHHHHHHhhccCCC--cEEEEecccc
Q 020270 235 YE--DLREFHQHLPKLLKPG--GIYSYFNGLC 262 (328)
Q Consensus 235 ~~--~l~~~~~~~~~lL~~g--G~~~~~~~~g 262 (328)
|. +...+++++++.|+|| |++....-+-
T Consensus 171 ~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 171 WSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 74 4568999999999999 9999875553
No 258
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.76 E-value=0.099 Score=48.13 Aligned_cols=101 Identities=11% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 157 GGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+||++|||.|.......... .....+++.++.+++...++ +......+++..++..... ...+||.|+.+.-
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEEEECcC
Confidence 3589999999999654444333 35677888898888887653 1111124455544422111 1136999999732
Q ss_pred -c-c---chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 232 -G-E---YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 232 -~-e---~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
- . ......++|..+.+.|+|||.+-+.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 1 1 1123458999999999999999876
No 259
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.51 E-value=0.085 Score=46.75 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=68.5
Q ss_pred CceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCCCCCCEEEEecC---
Q 020270 158 GHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQLESYDGIFFDTY--- 231 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f--- 231 (328)
.+++++|+|.|.......... .....+++-+++.++...++-.. ....+.+..++|.+.... ..||.|..+.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG-QKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC-CCccEEEECCCCCC
Confidence 579999999998543333322 35778888999888877764211 123477888887653322 26999988631
Q ss_pred -------c---------------cchhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 232 -------G---------------EYYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 232 -------~---------------e~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
+ +.....+.+++.+.+.|+|||++.+-.|
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 0 0122456788899999999999986555
No 260
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.50 E-value=0.096 Score=43.33 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=65.2
Q ss_pred chHHHHHHHHhh-cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCC
Q 020270 143 KPLMEAHAKAIC-SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLE 221 (328)
Q Consensus 143 tpL~~a~~~~~~-~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~ 221 (328)
+|-|....+... -...++|++|+|.|-...... ..-..-.+++.++.-++.+.+..-.....++....+..+.... .
T Consensus 16 ~~~hs~v~~a~~~~~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~ 93 (192)
T PF03848_consen 16 TPTHSEVLEAVPLLKPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-E 93 (192)
T ss_dssp ----HHHHHHCTTS-SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-T
T ss_pred CCCcHHHHHHHhhcCCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-C
Confidence 555554443322 245789999999996333222 2233567778788777766553222334455555554443332 4
Q ss_pred CCCEEEEecCccch--hhHHHHHHHHhhccCCCcEEEEecccc
Q 020270 222 SYDGIFFDTYGEYY--EDLREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 222 ~fD~i~~d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
.||.|+........ +.+..+++.+-..++|||.+.+.+.+.
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 69999874331111 334578899999999999998765554
No 261
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.48 E-value=0.094 Score=43.31 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=58.1
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc--------cCCCCCC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL--------SQLESYD 224 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~--------~~~~~fD 224 (328)
..+..+|++|+|+|........ .......+++.++.. + ..++....++..+.. .....||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------P---IENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------c---CCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4567899999999984332221 123356777766543 1 134555555543311 1224699
Q ss_pred EEEEecCc---cch--------hhHHHHHHHHhhccCCCcEEEEe
Q 020270 225 GIFFDTYG---EYY--------EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 225 ~i~~d~f~---e~~--------~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.|+.|..+ ..| +.+..++..+.+.|+|||++.+.
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 99987642 122 12357899999999999999974
No 262
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.45 E-value=0.13 Score=48.61 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=76.7
Q ss_pred cCCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+..||++|+|.|....... .......++++.++..++.+.++--... .++....++...... ..+||.|+.|+-
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-EEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-CCCCCEEEEcCC
Confidence 456789999999997332211 1123367888999988877755321111 246677776655432 246999999853
Q ss_pred ----------cc-ch----h-------hHHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhhhHHHHHHHHhc-CCeE
Q 020270 232 ----------GE-YY----E-------DLREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVYCHLVSLELENL-GFSM 287 (328)
Q Consensus 232 ----------~e-~~----~-------~l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y~~~~~~~l~~~-G~~~ 287 (328)
|+ .| + ..+.++..+.+.|+|||+++|.+ .+.+. -...+++..|+.. +|.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~------Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE------ENELQIEAFLQRHPEFSA 401 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh------hHHHHHHHHHHhCCCCEE
Confidence 11 01 1 12368889999999999999853 22211 1233666667654 5654
No 263
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=95.30 E-value=0.13 Score=45.10 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCceeeecccCCcc--------hhHHhc--cCCceEEeeccCHHHHHHHHHcCCCC-----------------------
Q 020270 156 GGGHILNIGFGMGLV--------DTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGE----------------------- 202 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~--------~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~----------------------- 202 (328)
...+|+++|||+|-- ...... .......+..-++++++...+.-+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 346899999999951 111111 12356788889999998887642210
Q ss_pred -----CCCeeEEecccchhccCCCCCCEEEEecCccch--hhHHHHHHHHhhccCCCcEEEEec
Q 020270 203 -----KNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY--EDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 203 -----~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
...+.+..++..+.......||.|+.-..-.++ ++...+++++.+.|+|||.+.+-+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 013444444443333334579999884332333 344589999999999999999643
No 264
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.16 E-value=0.14 Score=49.15 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=75.7
Q ss_pred CceeeecccCCcchhHHh-ccCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEEecC--c
Q 020270 158 GHILNIGFGMGLVDTAIQ-QYSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFFDTY--G 232 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~-~~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f--~ 232 (328)
..+|++|+|+|....... .......++++-+++.++...++-. .....+.+..+++.+... ...||.|+++.- +
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-KQKFDFIVSNPPYIS 218 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-CCCccEEEECCCCCC
Confidence 579999999998543322 2233567888899988888876521 112357777777654332 246999998642 0
Q ss_pred -----c-------------------chhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 233 -----E-------------------YYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 233 -----e-------------------~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+ .....+.+++.+.+.|+|||.+.+-.|.... ..+...++..||.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~---------~~v~~~~~~~g~~ 287 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQE---------EAVTQIFLDHGYN 287 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchH---------HHHHHHHHhcCCC
Confidence 0 1122356777888999999999875543221 1334456678886
No 265
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.16 E-value=0.069 Score=51.33 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=75.9
Q ss_pred CCCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcC-CCCCCCeeEEecccchhccCC--CCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTG-WGEKNNVKIIFGRWQDNLSQL--ESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g-~~~~~~~~~~~g~w~~~~~~~--~~fD~i~~d~f 231 (328)
....++|+|||.|-..... ....-..+.++|-+...+..++..- -..-.++.++.+.+..+...+ .++|.||. .|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i-~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI-LF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE-EC
Confidence 3566999999999733222 2334467888996665555544431 111246777777654333222 56888887 78
Q ss_pred ccchhhH---------HHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhc-CCeE
Q 020270 232 GEYYEDL---------REFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENL-GFSM 287 (328)
Q Consensus 232 ~e~~~~l---------~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~-G~~~ 287 (328)
|..|..- .+|++.+.++|+|||.+-+-+ |.. -|..-+...+.+. +|..
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T----D~~----~y~~~~~~~~~~~~~f~~ 483 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS----DIE----NYFYEAIELIQQNGNFEI 483 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc----CCH----HHHHHHHHHHHhCCCeEe
Confidence 8888432 389999999999999998533 222 3444333444444 4763
No 266
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.91 E-value=0.24 Score=41.22 Aligned_cols=120 Identities=20% Similarity=0.335 Sum_probs=70.6
Q ss_pred chHHHHHHHHhhcCCCceeeecccCCcchhHHhccCCceEE-eeccC----HHHHHHHHHcCCCC-CCCeeE--Eecccc
Q 020270 143 KPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQQYSPVTHT-ILEAH----PEVYERMLRTGWGE-KNNVKI--IFGRWQ 214 (328)
Q Consensus 143 tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~-a~e~~----~~~~~~L~~~g~~~-~~~~~~--~~g~w~ 214 (328)
.|+......-.......+||+|.|+|-.........|-... -.+.. ..+...+.+.|... .+.+.+ ....|.
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 56655555544444446999999999854444444442222 22222 24445555555331 222222 222243
Q ss_pred hhcc---CCCCCCEEEEecC--ccchhhHHHHHHHHhhccCCCcEEEEecccc
Q 020270 215 DNLS---QLESYDGIFFDTY--GEYYEDLREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 215 ~~~~---~~~~fD~i~~d~f--~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
-... ....||.||.--. -..|+....+|+.+.++|++||.|.+|--+.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 3311 2357999988544 3467777899999999999999999984443
No 267
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=94.89 E-value=0.36 Score=40.98 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHH-HcCCCC------------CCCeeEEecccchhccC-CC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERML-RTGWGE------------KNNVKIIFGRWQDNLSQ-LE 221 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~-~~g~~~------------~~~~~~~~g~w~~~~~~-~~ 221 (328)
...++|..|||.|-....... .....++++..+.-++.+. +++... ...+++..++..+.... ..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 457899999999973332222 3446788998888888754 333221 23455555654433222 24
Q ss_pred CCCEEEEecC--ccchhhHHHHHHHHhhccCCCcE
Q 020270 222 SYDGIFFDTY--GEYYEDLREFHQHLPKLLKPGGI 254 (328)
Q Consensus 222 ~fD~i~~d~f--~e~~~~l~~~~~~~~~lL~~gG~ 254 (328)
.||.||--++ .-.-+....+++.+.++|+|||+
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 6888885332 11123345899999999999986
No 268
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=94.73 E-value=0.086 Score=42.07 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=70.9
Q ss_pred cCCCceeeecccCCcchhHH--hccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC-----CCCCEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAI--QQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL-----ESYDGIF 227 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~--~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~-----~~fD~i~ 227 (328)
+.+..|+|+|.|+|.....+ .+..+....++|-+++.+..|.+.- +.++++.|+..+.-..+ ..||.|+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 56678999999999954433 4567788899999999999998853 55668888765544222 3577776
Q ss_pred Eec----CccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 228 FDT----YGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 228 ~d~----f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.-- ||-+-.- ++++.+...|..||.+..|
T Consensus 123 S~lPll~~P~~~~i--aile~~~~rl~~gg~lvqf 155 (194)
T COG3963 123 SGLPLLNFPMHRRI--AILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eccccccCcHHHHH--HHHHHHHHhcCCCCeEEEE
Confidence 632 2333333 8889999999999999854
No 269
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.65 E-value=0.25 Score=46.61 Aligned_cols=116 Identities=24% Similarity=0.343 Sum_probs=72.0
Q ss_pred hhhccchHHHHHHHHhhcC-----CCceeeecccCCcch-hHHh----ccCCceEEeeccCHHHHHHH----HHcCCCCC
Q 020270 138 MMAWEKPLMEAHAKAICSG-----GGHILNIGFGMGLVD-TAIQ----QYSPVTHTILEAHPEVYERM----LRTGWGEK 203 (328)
Q Consensus 138 ~~~~~tpL~~a~~~~~~~~-----~~~iLe~g~~~g~~~-~~~~----~~~~~~~~a~e~~~~~~~~L----~~~g~~~~ 203 (328)
...++.++..|........ ...|+.+|+|+|+.. ...+ .+.....+|+|.++..+..| ..++|+.
T Consensus 163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~- 241 (448)
T PF05185_consen 163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGD- 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCC-
Confidence 3445667766666555433 456999999999942 2222 23577899999887655444 4567744
Q ss_pred CCeeEEecccchhccCCCCCCEEEEecCc--cchhhHHHHHHHHhhccCCCcEEE
Q 020270 204 NNVKIIFGRWQDNLSQLESYDGIFFDTYG--EYYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 204 ~~~~~~~g~w~~~~~~~~~fD~i~~d~f~--e~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
.++++.++-+++.... ..|+|...-.. ...+.+.+.++..-+.|||||++-
T Consensus 242 -~V~vi~~d~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 242 -KVTVIHGDMREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -TEEEEES-TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -eEEEEeCcccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4888888866654432 58888775541 122344577888889999998875
No 270
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.60 E-value=0.43 Score=38.58 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=63.4
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
.+..++|+|+|.|......... .....++|.++.+++.+.+.-. ...++++..++..+....-..||.|+.+. |-+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~-~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~ 89 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFA-AADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNI 89 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhc-cCCCEEEEECchhcCCccccCCCEEEECC-Cccc
Confidence 4467999999999854433333 3567889999999999877542 23568888888766544334589998865 3232
Q ss_pred hhHHHHHHHHhhc--cCCCcEEEE
Q 020270 236 EDLREFHQHLPKL--LKPGGIYSY 257 (328)
Q Consensus 236 ~~l~~~~~~~~~l--L~~gG~~~~ 257 (328)
.. +++.++... +.++|.+.+
T Consensus 90 ~~--~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 90 ST--PILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred HH--HHHHHHHhcCCCcceEEEEE
Confidence 22 555554443 337777774
No 271
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.49 Score=38.46 Aligned_cols=124 Identities=21% Similarity=0.348 Sum_probs=74.3
Q ss_pred CCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecC--
Q 020270 156 GGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY-- 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f-- 231 (328)
...-++|+|+|.|+..+.... ....+|.+..-||...+.=++..-.....+..+..+....+.. ++.|.+.|+.-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEECCCcC
Confidence 356799999999996544332 3567888888888777663332111223355566666655555 77898888654
Q ss_pred ---cc-c--------hh-------hHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 232 ---GE-Y--------YE-------DLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 232 ---~e-~--------~~-------~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
++ . |. -+..++..+.++|.|.|+|=. .++...+.. ++.+ .|+.-||.+.
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl-v~~~~N~p~------ei~k-~l~~~g~~~~ 189 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL-VALRANKPK------EILK-ILEKKGYGVR 189 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe-eehhhcCHH------HHHH-HHhhccccee
Confidence 11 1 21 134677778889999998752 222222211 1222 5788888743
No 272
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.53 E-value=0.87 Score=41.18 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=97.1
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC-CC-CCCeeEEecccchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW-GE-KNNVKIIFGRWQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~-~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~ 232 (328)
..+..|+++=+|.|-..-.........-.|++-||+-+++|.++-- +. ...+..+.|+-.++...+..+|-|......
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4478899999999984433333333348899999999999988521 11 223778899988888887889999986653
Q ss_pred cchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccc
Q 020270 233 EYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVW 303 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w 303 (328)
. +. +|...+.+.+++||++-+|...-...... -+-..++..-...|.+++...+..=++-.+++|
T Consensus 267 ~--a~--~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~ 331 (341)
T COG2520 267 S--AH--EFLPLALELLKDGGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVY 331 (341)
T ss_pred c--ch--hhHHHHHHHhhcCcEEEEEeccchhhccc--chHHHHHHHHhhccCcceEEEEEEecccCCCee
Confidence 2 22 88999999999999999765544332210 122344445566788777777766444455666
No 273
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.52 E-value=0.48 Score=39.76 Aligned_cols=138 Identities=15% Similarity=0.056 Sum_probs=78.2
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecCccch
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYY 235 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~ 235 (328)
..+.++.|+|+|-+....-...--..-.+|..+..++.+.+.-.. ......+..-..|+..+....||+|+.-=-..|.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 467899999998755322222233344577888888888753222 1233344444577777766689999884443333
Q ss_pred --hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhh------h-HHHHHHHHhcCCeEEEEEeeC
Q 020270 236 --EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVY------C-HLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 236 --~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y------~-~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+++.+|+.++...|+|+|++.+=-.........||-= + ...+...++||+.+--+++.-
T Consensus 136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 136 TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence 5688999999999999999997432222211111110 1 245557788999988887665
No 274
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.49 E-value=0.92 Score=39.18 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCccchh
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYYE 236 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~~ 236 (328)
..++|++|+|-|-+...... .--..++-|..+.|...|.+.|+. +.. ...|++.. ..||+|-.----..=.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~kg~~----vl~-~~~w~~~~---~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKKGFT----VLD-IDDWQQTD---FKFDVISCLNVLDRCD 165 (265)
T ss_pred CCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhCCCe----EEe-hhhhhccC---CceEEEeehhhhhccC
Confidence 46799999999875543332 222467788999999999998854 222 12266432 2488876533222223
Q ss_pred hHHHHHHHHhhccCCCcEEEEec--------cc--cCC---------cchhHHhh-hHHHHHHHHhcCCe-EEEEEeeCC
Q 020270 237 DLREFHQHLPKLLKPGGIYSYFN--------GL--CGG---------NAFFHVVY-CHLVSLELENLGFS-MQLIPLPVK 295 (328)
Q Consensus 237 ~l~~~~~~~~~lL~~gG~~~~~~--------~~--g~~---------~~~~~~~y-~~~~~~~l~~~G~~-~~~~~~~~~ 295 (328)
+...+++.+.+.|+|+|++...- -. |.. ....++-+ ...+ .-|+.+||+ +-|+-+|=
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~tr~PY- 243 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERWTRLPY- 243 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEEeccCc-
Confidence 45589999999999999987521 11 211 11212222 2244 578999999 56777776
Q ss_pred CCCC
Q 020270 296 NCLG 299 (328)
Q Consensus 296 ~~~~ 299 (328)
-+.|
T Consensus 244 LcEG 247 (265)
T PF05219_consen 244 LCEG 247 (265)
T ss_pred cccC
Confidence 4444
No 275
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.31 E-value=0.82 Score=42.24 Aligned_cols=134 Identities=16% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHH---cCCCCCCCeeEEecccchhccC----CCCCCEEEEe
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLR---TGWGEKNNVKIIFGRWQDNLSQ----LESYDGIFFD 229 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~---~g~~~~~~~~~~~g~w~~~~~~----~~~fD~i~~d 229 (328)
++++|++-+-+|...-.-..+....-+.+......++...+ .+--....+.++.++.-+.+.. -..||+|+.|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 78899998888873322222223234444444444444433 2222234466777773333322 2479999999
Q ss_pred cCc------cchh---hHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEee
Q 020270 230 TYG------EYYE---DLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLP 293 (328)
Q Consensus 230 ~f~------e~~~---~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~ 293 (328)
+-+ ..|. +.+.+...+.++|+|||.+.+++........ -+...+.+.+.++|..+++.+..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~---~f~~~i~~a~~~~~~~~~~~~~~ 367 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSD---LFLEIIARAAAAAGRRAQEIEGE 367 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHH---HHHHHHHHHHHhcCCcEEEeecc
Confidence 862 2333 3446666799999999999999887776655 56677888888999888877633
No 276
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=94.30 E-value=0.32 Score=40.72 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=65.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCC----CCCcHHHHHHH--hCcHHHHHHHHHcC-CCCCcc---CCCCCCHH
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDS----DGLTPLMHAAK--LGHANLVKTLLEAG-APWNAL---SSSNLSAG 74 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~----~G~TpLh~Aa~--~g~~~~v~~Ll~~g-a~~n~~---d~~g~tpL 74 (328)
-++|-.|..++..+++.+||.+ .....+|- .+.--+-++.. ..+..++++.|++| +++|.. -+.|.|.|
T Consensus 180 ~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML 258 (284)
T PF06128_consen 180 HQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML 258 (284)
T ss_pred HHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence 3567778877778888888874 22223331 12223444443 34678999999998 477764 45799999
Q ss_pred HHHHHcCCHHHHHHHHHcCCCh
Q 020270 75 DFAMDSGHQEVFEVLLNAGIQA 96 (328)
Q Consensus 75 ~~A~~~g~~~~v~~Ll~~g~~~ 96 (328)
.-|...+..+++.+||++|+-.
T Consensus 259 DNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 259 DNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred HhHHhcCcHHHHHHHHHcCccc
Confidence 9999999999999999999843
No 277
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.83 E-value=0.49 Score=40.24 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=58.3
Q ss_pred ceeeecccCCcchh-HHhc--cCCceEEeeccCHHHHHHHHHcC-CCCC---CCeeEEecc-cchhccCCCCCCEEEEec
Q 020270 159 HILNIGFGMGLVDT-AIQQ--YSPVTHTILEAHPEVYERMLRTG-WGEK---NNVKIIFGR-WQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 159 ~iLe~g~~~g~~~~-~~~~--~~~~~~~a~e~~~~~~~~L~~~g-~~~~---~~~~~~~g~-w~~~~~~~~~fD~i~~d~ 230 (328)
.|||+|||.|-..- -.+. ...+..+++.-.|..++.+.++. +++. ..+-...+. |+..+ ..+++|.|-.-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~-~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPP-EEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCC-CcCccceEEEEE
Confidence 69999999987221 1122 22377888888899999888764 2322 111111111 22211 124677653311
Q ss_pred -C-ccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 231 -Y-GEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 231 -f-~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+ .-+=+.+...++.+.++|||||.+.|-
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1 112234558999999999999999963
No 278
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.61 E-value=0.18 Score=43.28 Aligned_cols=131 Identities=21% Similarity=0.189 Sum_probs=77.3
Q ss_pred hhccchHHHHHHHHhh-cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhc
Q 020270 139 MAWEKPLMEAHAKAIC-SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNL 217 (328)
Q Consensus 139 ~~~~tpL~~a~~~~~~-~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~ 217 (328)
.--+.||-.-...... .....|-++|||-+-+.. ......+..-+ . ..+-.++..+...++
T Consensus 162 kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~--~~~~kV~SfDL----------~------a~~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 162 KWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS--SERHKVHSFDL----------V------AVNERVIACDMRNVP 223 (325)
T ss_pred hCCCChHHHHHHHHHhCcCceEEEecccchhhhhh--ccccceeeeee----------e------cCCCceeeccccCCc
Confidence 3336787766555433 344557788887554331 11111111110 0 112223333344444
Q ss_pred cCCCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 218 SQLESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 218 ~~~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
...++.|++.| +.+.+-+++.+|+.++.|+|++||.+=+. ..+..|-|+-. .-+.|...||.+.-.++..
T Consensus 224 l~d~svDvaV~-CLSLMgtn~~df~kEa~RiLk~gG~l~IA----Ev~SRf~dv~~--f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 224 LEDESVDVAVF-CLSLMGTNLADFIKEANRILKPGGLLYIA----EVKSRFSDVKG--FVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred CccCcccEEEe-eHhhhcccHHHHHHHHHHHhccCceEEEE----ehhhhcccHHH--HHHHHHHcCCeeeehhhhc
Confidence 55578898877 55677788999999999999999998743 33334444333 4567899999987766655
No 279
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.40 E-value=1.8 Score=37.01 Aligned_cols=143 Identities=21% Similarity=0.147 Sum_probs=73.1
Q ss_pred cchHHHHHHHHhhc--CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccC
Q 020270 142 EKPLMEAHAKAICS--GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 142 ~tpL~~a~~~~~~~--~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~ 219 (328)
+|.+..|..-.... .+++|+=+|-+--..-..--.+.|...+..+-...+++++.+..-.....++.+..+....++.
T Consensus 28 eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~ 107 (243)
T PF01861_consen 28 ETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPE 107 (243)
T ss_dssp HHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---T
T ss_pred HHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCH
Confidence 46666654433332 4678999995432211111234566777888888888887654322233477766666555544
Q ss_pred C--CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 220 L--ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 220 ~--~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
- +.||++|.|+ |+.-+-++-|..+....|+..|...++ |++.-... . .-...+++.|.+.||-++
T Consensus 108 ~~~~~fD~f~TDP-PyT~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s-~-~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 108 ELRGKFDVFFTDP-PYTPEGLKLFLSRGIEALKGEGCAGYF-GFTHKEAS-P-DKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEE-EE-TTT---H-HHHHHHHHHHHTS--EEE
T ss_pred HHhcCCCEEEeCC-CCCHHHHHHHHHHHHHHhCCCCceEEE-EEecCcCc-H-HHHHHHHHHHHHCCcCHH
Confidence 2 6899999988 577788889999999999865544433 34432211 0 012267777889999865
No 280
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.26 E-value=0.58 Score=40.88 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=59.1
Q ss_pred CCCeeEEecccchhccCC---CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchh----------H
Q 020270 203 KNNVKIIFGRWQDNLSQL---ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFF----------H 269 (328)
Q Consensus 203 ~~~~~~~~g~w~~~~~~~---~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~----------~ 269 (328)
..++.+..|++.++...- ..||+|..--|-..-..+.++++.+.++|||||.+.- +|+..=.+ .
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN---~GPLlyh~~~~~~~~~~sv 219 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWIN---FGPLLYHFEPMSIPNEMSV 219 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEe---cCCccccCCCCCCCCCccc
Confidence 456778888887776655 6799986655544445577999999999999997763 34331111 1
Q ss_pred HhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 270 VVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 270 ~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+--..-++...+..||+++-++..+
T Consensus 220 eLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 220 ELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEee
Confidence 1112233445566999998888866
No 281
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=93.23 E-value=0.91 Score=36.95 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=50.1
Q ss_pred hcCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhc----cCCCCCC
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNL----SQLESYD 224 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~----~~~~~fD 224 (328)
...+++|||+|+|+|+..-..... .+...++.+.++ +++.+..+ +......+....-+|.+.. .....||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999999943322332 344455555555 77766553 1112456666667786633 1124688
Q ss_pred EEEE-ecCccchhhHHHHHHHHhhccCCCcE
Q 020270 225 GIFF-DTYGEYYEDLREFHQHLPKLLKPGGI 254 (328)
Q Consensus 225 ~i~~-d~f~e~~~~l~~~~~~~~~lL~~gG~ 254 (328)
.|.- |..-. -+.+..+++.+.++|+++|.
T Consensus 122 ~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 122 VILASDVLYD-EELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEEecccch-HHHHHHHHHHHHHHhCCCCE
Confidence 8765 32211 13344888888899998776
No 282
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=93.21 E-value=0.69 Score=38.62 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=62.1
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCC-CCCCEEEEecC-c
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQL-ESYDGIFFDTY-G 232 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f-~ 232 (328)
.+.++|++++|+|......-........++|.+++.++.+.++--. ...++.+..+++...+... ..||.|++|+= .
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 3568999999999855322222345788899999998877653110 1125788888866544322 36999999974 2
Q ss_pred cchhhHHHHHHHHh--hccCCCcEEEEec
Q 020270 233 EYYEDLREFHQHLP--KLLKPGGIYSYFN 259 (328)
Q Consensus 233 e~~~~l~~~~~~~~--~lL~~gG~~~~~~ 259 (328)
..+.. +.++.+. .+|+|++++.+-+
T Consensus 133 ~g~~~--~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 KGLLE--ETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CChHH--HHHHHHHHCCCcCCCcEEEEEe
Confidence 32221 3333333 3467777666433
No 283
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.76 E-value=0.085 Score=39.00 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=41.6
Q ss_pred eEEeeccCH---HHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEE
Q 020270 181 THTILEAHP---EVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIY 255 (328)
Q Consensus 181 ~~~a~e~~~---~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~ 255 (328)
..++++..+ ..-+.+.+.+ ...+++++.|...+.+... ..+|.+|.|.- -.++.....+..+...|+|||++
T Consensus 25 ~~~~vD~~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggvi 101 (106)
T PF13578_consen 25 KLYSVDPFPGDEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVI 101 (106)
T ss_dssp --EEEESS------------GG--G-BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEE
T ss_pred CEEEEECCCcccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEE
Confidence 455666555 3333333323 2346888888866655444 47999999985 23455567888899999999998
Q ss_pred EE
Q 020270 256 SY 257 (328)
Q Consensus 256 ~~ 257 (328)
.+
T Consensus 102 v~ 103 (106)
T PF13578_consen 102 VF 103 (106)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 284
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.59 Score=38.90 Aligned_cols=101 Identities=23% Similarity=0.304 Sum_probs=67.6
Q ss_pred hcCCCceeeecccCCcchhHHh---ccCCceEEeeccCHHHHHHHHHcC--CC---------CCCCeeEEecccchhccC
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQ---QYSPVTHTILEAHPEVYERMLRTG--WG---------EKNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~---~~~~~~~~a~e~~~~~~~~L~~~g--~~---------~~~~~~~~~g~w~~~~~~ 219 (328)
...+.+.|++|.|+|....... +.+-...+.+|-+++++++-.++= +. +...+.++.|+-......
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 3567889999999998443222 223223378888999998876531 11 123555556664444444
Q ss_pred CCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 220 LESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 220 ~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
...||.||.-+... +..+++.+.|++||++..--+
T Consensus 160 ~a~YDaIhvGAaa~------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPYDAIHVGAAAS------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCcceEEEccCcc------ccHHHHHHhhccCCeEEEeec
Confidence 46799999976543 677888899999999996544
No 285
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=92.06 E-value=0.35 Score=41.96 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=48.2
Q ss_pred CCCEEEEecC----ccchhhHHHHHHHHhhccCCCcEEEEeccccCC-----cchhHHhhh--HHHHHHHHhcCCeEEEE
Q 020270 222 SYDGIFFDTY----GEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG-----NAFFHVVYC--HLVSLELENLGFSMQLI 290 (328)
Q Consensus 222 ~fD~i~~d~f----~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~-----~~~~~~~y~--~~~~~~l~~~G~~~~~~ 290 (328)
.||.|..-.. ....++.+....++.++|||||.|.....++.. ...|.-++. ..++..|+++||.|+..
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEec
Confidence 3888866444 345556668888999999999999987666653 122222333 48888999999998777
Q ss_pred E
Q 020270 291 P 291 (328)
Q Consensus 291 ~ 291 (328)
+
T Consensus 238 ~ 238 (256)
T PF01234_consen 238 E 238 (256)
T ss_dssp E
T ss_pred c
Confidence 6
No 286
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=92.02 E-value=1 Score=41.58 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=68.0
Q ss_pred CceeeecccCCcchhHH-hc-cCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCC-CCCCEEEEecCcc
Q 020270 158 GHILNIGFGMGLVDTAI-QQ-YSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQL-ESYDGIFFDTYGE 233 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~-~~-~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f~e 233 (328)
..+|+..+|+|+..-.. .. ......++.+.+++.++.+.++--. ...++.+..++....+... ..||.|+.|+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs 125 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFGT 125 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCCC
Confidence 47999999999943322 22 2345677788999999988664211 1124677777766665433 4699999999832
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.. +|++.+.+.+++||.+.+.
T Consensus 126 --~~--~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 126 --PA--PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --cH--HHHHHHHHhcccCCEEEEE
Confidence 22 8999999999999988775
No 287
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=91.29 E-value=6.9 Score=33.14 Aligned_cols=136 Identities=20% Similarity=0.204 Sum_probs=77.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHH-HcCCCC------------CCCeeEEecccchhccCC-
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERML-RTGWGE------------KNNVKIIFGRWQDNLSQL- 220 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~-~~g~~~------------~~~~~~~~g~w~~~~~~~- 220 (328)
....++|--|||.|.-...... .-..-++++-.+.-++.+. +++... ..++++..|+........
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 4556899999999973222222 1245678888888787764 344211 135677777765544433
Q ss_pred CCCCEEEEecC--ccchhhHHHHHHHHhhccCCCcE--EEEeccccCCcc-hhHHhhhHHHHHHHHhcCCeEEEEEe
Q 020270 221 ESYDGIFFDTY--GEYYEDLREFHQHLPKLLKPGGI--YSYFNGLCGGNA-FFHVVYCHLVSLELENLGFSMQLIPL 292 (328)
Q Consensus 221 ~~fD~i~~d~f--~e~~~~l~~~~~~~~~lL~~gG~--~~~~~~~g~~~~-~~~~~y~~~~~~~l~~~G~~~~~~~~ 292 (328)
+.||.||--++ .-.-+.-..+.+++.++|+|||. +.++.--..... -=|.+-...++..+. .+|+++..+.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 57999998877 11112333888999999999999 555432222111 101122234444444 8899776665
No 288
>PHA03412 putative methyltransferase; Provisional
Probab=91.18 E-value=2.8 Score=35.91 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=90.9
Q ss_pred hhccchHHHHHHHHh-hcCCCceeeecccCCcchhHHhc----cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEeccc
Q 020270 139 MAWEKPLMEAHAKAI-CSGGGHILNIGFGMGLVDTAIQQ----YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRW 213 (328)
Q Consensus 139 ~~~~tpL~~a~~~~~-~~~~~~iLe~g~~~g~~~~~~~~----~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w 213 (328)
.+..||-+.|..... .....+||++|+|+|........ .......++|-++..++...++- ..+.+..++.
T Consensus 31 GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~ 106 (241)
T PHA03412 31 GAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADA 106 (241)
T ss_pred CccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcch
Confidence 445699888754432 12357899999999995432221 22457888999999999988653 2355666655
Q ss_pred chhccCCCCCCEEEEecC-----ccch-------hhHHHHHHHHhhccCCCcEEEEeccccCC----cchh--HH-hhhH
Q 020270 214 QDNLSQLESYDGIFFDTY-----GEYY-------EDLREFHQHLPKLLKPGGIYSYFNGLCGG----NAFF--HV-VYCH 274 (328)
Q Consensus 214 ~~~~~~~~~fD~i~~d~f-----~e~~-------~~l~~~~~~~~~lL~~gG~~~~~~~~g~~----~~~~--~~-~y~~ 274 (328)
..... ..+||.|..+.= ..++ .-...+++++.+++++|+. ..-..+.+- ++.+ -+ +-..
T Consensus 107 ~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~ 184 (241)
T PHA03412 107 LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSS 184 (241)
T ss_pred hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccH
Confidence 43222 246999977653 1111 2245688888886666664 545444432 2221 00 1112
Q ss_pred HHHHHHHhcCCeEEEEEeeCCCCCCcccccccc
Q 020270 275 LVSLELENLGFSMQLIPLPVKNCLGEEVWEGVK 307 (328)
Q Consensus 275 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~ 307 (328)
-...-+++-|+..+. -.-|..+.=-+.|.|+.
T Consensus 185 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 216 (241)
T PHA03412 185 KCKKFLDETGLEMNP-GCGIDTGYYLEDWKGVK 216 (241)
T ss_pred HHHHHHHhcCeeecC-CCCccceeehhhccCCC
Confidence 444556777765321 12222222235677764
No 289
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=91.17 E-value=2.9 Score=39.57 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=62.0
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC-CCCCCeeEEecccchhccC----CCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW-GEKNNVKIIFGRWQDNLSQ----LESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~-~~~~~~~~~~g~w~~~~~~----~~~fD~i~~d 229 (328)
..+..+|++|+|+|.......... ....+++.++++++...++-. ....++++..+++.+.... ..+||.|+.|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 345789999999998543333322 467789999999988776421 1113588888887665422 2469999998
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEE
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
.--.. +.+..+.+.+ ++|++++-
T Consensus 375 PPr~g---~~~~~~~l~~-~~~~~ivy 397 (443)
T PRK13168 375 PPRAG---AAEVMQALAK-LGPKRIVY 397 (443)
T ss_pred cCCcC---hHHHHHHHHh-cCCCeEEE
Confidence 74222 2355566555 46665543
No 290
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=91.14 E-value=2 Score=36.18 Aligned_cols=125 Identities=21% Similarity=0.254 Sum_probs=77.0
Q ss_pred CCceeeecccCCcchhHHh-ccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 157 GGHILNIGFGMGLVDTAIQ-QYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~-~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
..+++++|.|.|...-... -......+.++....=+.+|......- -.+++++.++.++.-.....||.|-.-++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 5789999999998221111 122233455554433333333322122 3569999999887765432299999888854
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEE
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIP 291 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~ 291 (328)
+..+.+.+..++++||.+..+-+...- -+-.-.+..+...|+.++...
T Consensus 147 ---L~~l~e~~~pllk~~g~~~~~k~~~~~------~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 ---LNVLLELCLPLLKVGGGFLAYKGLAGK------DELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ---hHHHHHHHHHhcccCCcchhhhHHhhh------hhHHHHHHHHHhhcCcEEEEE
Confidence 557888888999999998766554332 122345666777787755443
No 291
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=90.79 E-value=3.4 Score=38.97 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=62.7
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC-CCCCCeeEEecccchhccC----CCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW-GEKNNVKIIFGRWQDNLSQ----LESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~-~~~~~~~~~~g~w~~~~~~----~~~fD~i~~d 229 (328)
.....++++++|.|......... ....+++|.++++++...++-. +.-.++++..+++.+.+.. ..+||.|+.|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 34578999999999854433332 2367889999999988876421 1123688888887664432 1369999999
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEE
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIY 255 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~ 255 (328)
.--..... ++.+.+.+ ++|++++
T Consensus 370 PPr~G~~~--~~l~~l~~-l~~~~iv 392 (431)
T TIGR00479 370 PPRKGCAA--EVLRTIIE-LKPERIV 392 (431)
T ss_pred cCCCCCCH--HHHHHHHh-cCCCEEE
Confidence 86333222 56665544 6777644
No 292
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=90.69 E-value=4.4 Score=38.58 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=72.6
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhccC-CCCCCEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLSQ-LESYDGIF 227 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~~-~~~fD~i~ 227 (328)
..+..||+++++.|-....... ...-..++.+.++.-++.|.++ |. .++.+...+-...... ...||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCeEE
Confidence 5667899999999984433222 2233677788777766666543 42 2334433332222111 14699999
Q ss_pred EecCc----------c---chh--h-------HHHHHHHHhhccCCCcEEEEecc-ccCCcchhHHhhhHHHHHHHHhcC
Q 020270 228 FDTYG----------E---YYE--D-------LREFHQHLPKLLKPGGIYSYFNG-LCGGNAFFHVVYCHLVSLELENLG 284 (328)
Q Consensus 228 ~d~f~----------e---~~~--~-------l~~~~~~~~~lL~~gG~~~~~~~-~g~~~~~~~~~y~~~~~~~l~~~G 284 (328)
.|+-- + .|+ + -++++..+.++|||||+++|.+. +.+. =...+++..|++.+
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e------ENE~vV~~~L~~~~ 262 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE------ENQAVCLWLKETYP 262 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH------HHHHHHHHHHHHCC
Confidence 99871 1 121 1 15788889999999999997532 2221 22347777787754
No 293
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.60 E-value=0.45 Score=39.70 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=63.7
Q ss_pred cchHHHHHHHHhhc-CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC
Q 020270 142 EKPLMEAHAKAICS-GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL 220 (328)
Q Consensus 142 ~tpL~~a~~~~~~~-~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~ 220 (328)
..|+......-... ....|-+.|||-+............+-.-.- ..+..+. ..+-..++...
T Consensus 57 ~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLv--------------a~n~~Vt--acdia~vPL~~ 120 (219)
T PF05148_consen 57 VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLV--------------APNPRVT--ACDIANVPLED 120 (219)
T ss_dssp S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S---EEEEESS---------------SSTTEE--ES-TTS-S--T
T ss_pred CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCceEEEeecc--------------CCCCCEE--EecCccCcCCC
Confidence 46776654444332 2356888999876644322222122211110 0112222 22334444444
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEe
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPL 292 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~ 292 (328)
++.|++.| +.+.+-+++..|..++.|+||+||.+-+.-. +..|-++ ..--..++..||++...+.
T Consensus 121 ~svDv~Vf-cLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV----~SRf~~~--~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 121 ESVDVAVF-CLSLMGTNWPDFIREANRVLKPGGILKIAEV----KSRFENV--KQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp T-EEEEEE-ES---SS-HHHHHHHHHHHEEEEEEEEEEEE----GGG-S-H--HHHHHHHHCTTEEEEEEE-
T ss_pred CceeEEEE-EhhhhCCCcHHHHHHHHheeccCcEEEEEEe----cccCcCH--HHHHHHHHHCCCeEEeccc
Confidence 67898888 5567778888999999999999999986532 2222211 1222358899999888764
No 294
>PLN02672 methionine S-methyltransferase
Probab=90.55 E-value=1.4 Score=46.00 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=77.8
Q ss_pred CceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCC-----------------CCCeeEEecccchhccC
Q 020270 158 GHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGE-----------------KNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~-----------------~~~~~~~~g~w~~~~~~ 219 (328)
..++++|+|.|......... .....++++-+++.++....+-... ..+++++.++|.+....
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 57999999999955443333 3357888899999998886543210 13578888887665532
Q ss_pred C-CCCCEEEEecC----c-------c--------------chh-------------hHHHHHHHHhhccCCCcEEEEecc
Q 020270 220 L-ESYDGIFFDTY----G-------E--------------YYE-------------DLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 220 ~-~~fD~i~~d~f----~-------e--------------~~~-------------~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
. ..||.|..+.= + + .+. -.+.+..++.+.|+|||.+.+-.|
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2 24888776543 0 0 011 125667778889999999997666
Q ss_pred ccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 261 LCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 261 ~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
..+.. .+.+..+++.||.
T Consensus 280 ~~q~~--------~v~~~l~~~~gf~ 297 (1082)
T PLN02672 280 GRPGQ--------AVCERLFERRGFR 297 (1082)
T ss_pred ccHHH--------HHHHHHHHHCCCC
Confidence 44332 2332567788987
No 295
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=90.22 E-value=1.9 Score=35.72 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=61.6
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC--CCCCeeEEecccchhccCC----CCCCEEEEe
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG--EKNNVKIIFGRWQDNLSQL----ESYDGIFFD 229 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~--~~~~~~~~~g~w~~~~~~~----~~fD~i~~d 229 (328)
.+..+|++++|+|...-.........-+++|.++..++.+.++-.. ....++++.++....+... ..||.||.|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 4578999999999844333333344678889999888877664211 1224677777754433221 248999999
Q ss_pred cCccchhhHHHHHHHH--hhccCCCcEEEE
Q 020270 230 TYGEYYEDLREFHQHL--PKLLKPGGIYSY 257 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~--~~lL~~gG~~~~ 257 (328)
+.-.. ....+.++.+ ..+|+++|++..
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 87331 1122444433 346788888874
No 296
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.19 E-value=1.6 Score=38.55 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=59.3
Q ss_pred CCceeeecccCCcchhHHhccCCc-eEEeeccCHHHHHHHHHcCCCCCC-CeeEEecccchhccCCCCCCEEEEecC-cc
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPV-THTILEAHPEVYERMLRTGWGEKN-NVKIIFGRWQDNLSQLESYDGIFFDTY-GE 233 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~-~~~a~e~~~~~~~~L~~~g~~~~~-~~~~~~g~w~~~~~~~~~fD~i~~d~f-~e 233 (328)
...++++|||.|..........|. ...-.+.+..-++.-..+-..... +..+..+...+... +.||.|..++= -+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~--~kfd~IisNPPfh~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE--GKFDLIISNPPFHA 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc--ccccEEEeCCCccC
Confidence 348999999999965544555553 333445666666655443221111 21333333222222 26999999764 11
Q ss_pred c----hhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 Y----YEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~----~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
. ...-.+++....+.|++||.+-..
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 1 111238999999999999999865
No 297
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=90.17 E-value=0.91 Score=41.11 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=59.1
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcC------CC-C----CCCeeEEecc--cchhc---cC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTG------WG-E----KNNVKIIFGR--WQDNL---SQ 219 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g------~~-~----~~~~~~~~g~--w~~~~---~~ 219 (328)
....||+++||.|--...+....+.+++.+.-..+.++...+.= -. . ......+.++ +..+. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 56789999999998555566677888888886665555544321 00 0 1233333333 22211 11
Q ss_pred -CCCCCEEEEecCccch-----hhHHHHHHHHhhccCCCcEEE
Q 020270 220 -LESYDGIFFDTYGEYY-----EDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 220 -~~~fD~i~~d~f~e~~-----~~l~~~~~~~~~lL~~gG~~~ 256 (328)
...||+|-. .|.-|| +..+.++..+...|+|||+|.
T Consensus 142 ~~~~FDvVSc-QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 142 RSRKFDVVSC-QFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TTS-EEEEEE-ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred cCCCcceeeh-HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 136888765 444444 456789999999999999998
No 298
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=89.66 E-value=0.6 Score=38.44 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhcc----CCCCCCEEEEe
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLS----QLESYDGIFFD 229 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~----~~~~fD~i~~d 229 (328)
.+..+|++-+|+|...-..-......-+.+|.++..++.+.++-. ......+++.++....+. ....||.||.|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 467899999999984332233345577889999988888776421 112246666666443332 23679999999
Q ss_pred cC-ccchhhHHHHHHHHh--hccCCCcEEEEecc
Q 020270 230 TY-GEYYEDLREFHQHLP--KLLKPGGIYSYFNG 260 (328)
Q Consensus 230 ~f-~e~~~~l~~~~~~~~--~lL~~gG~~~~~~~ 260 (328)
+= ..... ..+.++.+. .+|+++|.+..-+.
T Consensus 122 PPY~~~~~-~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 122 PPYAKGLY-YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHH-HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCcccchH-HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 73 22211 246666666 78889999885443
No 299
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.63 E-value=10 Score=31.18 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=86.2
Q ss_pred hhhhhhccchHHHHHHHHhh------cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeE
Q 020270 135 KAIMMAWEKPLMEAHAKAIC------SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKI 208 (328)
Q Consensus 135 ~~~~~~~~tpL~~a~~~~~~------~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~ 208 (328)
...+.++.||--.|+.-... -.++.++++|+|+|+..-...-..+-.-++++-.++.++.+.++--.-...+.+
T Consensus 18 ~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f 97 (198)
T COG2263 18 KLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEF 97 (198)
T ss_pred CccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEE
Confidence 33455666776655332211 134569999999999554445556777888999999999998764332335666
Q ss_pred EecccchhccCCCCCCEEEEecCccch---hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCC
Q 020270 209 IFGRWQDNLSQLESYDGIFFDTYGEYY---EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGF 285 (328)
Q Consensus 209 ~~g~w~~~~~~~~~fD~i~~d~f~e~~---~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~ 285 (328)
...+..++.. .+|.+..++--..| +| ++|.++..+.. ..+++..++- +..-++..-.++|+
T Consensus 98 ~~~dv~~~~~---~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~s--~vVYsiH~a~----------~~~f~~~~~~~~G~ 161 (198)
T COG2263 98 VVADVSDFRG---KFDTVIMNPPFGSQRRHAD-RPFLLKALEIS--DVVYSIHKAG----------SRDFVEKFAADLGG 161 (198)
T ss_pred EEcchhhcCC---ccceEEECCCCccccccCC-HHHHHHHHHhh--heEEEeeccc----------cHHHHHHHHHhcCC
Confidence 6555444433 37777776643322 33 38888877775 4666654442 22345556778998
Q ss_pred eEEEE
Q 020270 286 SMQLI 290 (328)
Q Consensus 286 ~~~~~ 290 (328)
+|...
T Consensus 162 ~v~~~ 166 (198)
T COG2263 162 TVTHI 166 (198)
T ss_pred eEEEE
Confidence 75544
No 300
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=89.32 E-value=0.77 Score=38.52 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhCC-CCCccc---CCCCCcHHHHHHHhCcHHHHHHHHHcCCC
Q 020270 15 GDIDKVKALIGSG-ADVSYF---DSDGLTPLMHAAKLGHANLVKTLLEAGAP 62 (328)
Q Consensus 15 g~~~~v~~LL~~g-ad~n~~---d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~ 62 (328)
.+..+++++|.+| +++|.+ -++|.|-|--|...++.+|+..||++||.
T Consensus 228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 4567888888888 567653 46899999999999999999999999984
No 301
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=88.83 E-value=11 Score=34.66 Aligned_cols=139 Identities=23% Similarity=0.285 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCCceeeecccCCcchhHHhc--cC-CceEEeeccCHHHHHHHHH----cCCCCCCCeeEEeccc---ch
Q 020270 146 MEAHAKAICSGGGHILNIGFGMGLVDTAIQQ--YS-PVTHTILEAHPEVYERMLR----TGWGEKNNVKIIFGRW---QD 215 (328)
Q Consensus 146 ~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~~--~~-~~~~~a~e~~~~~~~~L~~----~g~~~~~~~~~~~g~w---~~ 215 (328)
|+++.......+..|+++.+..|-....... .. ....+|.+-++.-++.|.+ .|.. ++......- ..
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~---nv~~~~~d~~~~~~ 222 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR---NVIVVNKDARRLAE 222 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC---ceEEEecccccccc
Confidence 3344444557788999999999984443322 22 2233777777766666554 3432 222332222 12
Q ss_pred hccCCCCCCEEEEecC----------ccc-h----hh-------HHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhh
Q 020270 216 NLSQLESYDGIFFDTY----------GEY-Y----ED-------LREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVY 272 (328)
Q Consensus 216 ~~~~~~~fD~i~~d~f----------~e~-~----~~-------l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y 272 (328)
.......||.|..|+= |+- | .+ -++++..+.++|||||+++|.+ .+-.. -.
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e------EN 296 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE------EN 296 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh------cC
Confidence 2222224999999876 221 1 11 1477788999999999999863 32222 33
Q ss_pred hHHHHHHHHhc-CCeEEEEEee
Q 020270 273 CHLVSLELENL-GFSMQLIPLP 293 (328)
Q Consensus 273 ~~~~~~~l~~~-G~~~~~~~~~ 293 (328)
..+++..|++. +|..+....+
T Consensus 297 E~vV~~~L~~~~~~~~~~~~~~ 318 (355)
T COG0144 297 EEVVERFLERHPDFELEPVRLP 318 (355)
T ss_pred HHHHHHHHHhCCCceeeccccc
Confidence 45788878775 6665544433
No 302
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=88.49 E-value=6.9 Score=33.35 Aligned_cols=101 Identities=7% Similarity=-0.034 Sum_probs=65.2
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHH-cCCC------------CCCCeeEEecccchhcc---C
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLR-TGWG------------EKNNVKIIFGRWQDNLS---Q 219 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~-~g~~------------~~~~~~~~~g~w~~~~~---~ 219 (328)
.+.++|-.|||.|........ .-..-++++-.+.-++.+.+ ++.. ....+++..+++.+... .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 457899999999973322222 12246788877777777644 2211 12367777787665532 2
Q ss_pred CCCCCEEEEecC----ccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 220 LESYDGIFFDTY----GEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 220 ~~~fD~i~~d~f----~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
...||.||--++ |.. .-..+.+++.++|+|||.+...+
T Consensus 122 ~~~fD~VyDra~~~Alpp~--~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPND--LRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCCcCeeeeehhHhcCCHH--HHHHHHHHHHHHhCCCcEEEEEE
Confidence 357999887666 332 23388889999999999887643
No 303
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=88.06 E-value=2.8 Score=37.49 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=65.5
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccC--HHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAH--PEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~--~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
.++-++++|+|.|+..-....-...+.+++|+. .+..+.|++.+ +-..++..+.|..+++... +..|.|....-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASN-NLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcC-CccceEEEccCccccccCc-hhccEEEeccchh
Confidence 456799999999995543344445567777743 35556666644 4556788889988776433 4588888766522
Q ss_pred c--hhhHHHHHHHHhhccCCCcEE
Q 020270 234 Y--YEDLREFHQHLPKLLKPGGIY 255 (328)
Q Consensus 234 ~--~~~l~~~~~~~~~lL~~gG~~ 255 (328)
+ -+.|.+-+-+..+.|+|.|..
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkM 278 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKM 278 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcc
Confidence 1 145667777788999987653
No 304
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=87.99 E-value=2.9 Score=38.68 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=65.5
Q ss_pred CCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHHHcC-CCCCCCeeEEecccchhccCCCCCCEEEEecCccc
Q 020270 157 GGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERMLRTG-WGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~~~g-~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
...+++.++|.|+..-.. ........++.+.+++.++.+.++- .+.-.++.+..++....+.....||.|..|.|..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs- 136 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGS- 136 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCC-
Confidence 357999999999944332 2222346788889999998886531 1111234566677655443234699999999822
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEe
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.. +|++.....+++||++-+.
T Consensus 137 -~~--~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 137 -PA--PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -cH--HHHHHHHHHhcCCCEEEEE
Confidence 22 7888878888999988764
No 305
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=87.88 E-value=4.3 Score=33.37 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC--CCCeeEEecccchhccCC---CCCCEEEEec
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE--KNNVKIIFGRWQDNLSQL---ESYDGIFFDT 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~--~~~~~~~~g~w~~~~~~~---~~fD~i~~d~ 230 (328)
.+.++|++=+|.|...-.--+.....-+.+|.+...++.|.++-..- ....+++..+....+..+ +.||.||.|+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 35679999999998443223445667788899999999888863222 255666666654444333 3499999998
Q ss_pred Ccc--chhhHHHHHH-HHhhccCCCcEEEE
Q 020270 231 YGE--YYEDLREFHQ-HLPKLLKPGGIYSY 257 (328)
Q Consensus 231 f~e--~~~~l~~~~~-~~~~lL~~gG~~~~ 257 (328)
=-. .+.....+.. .-...|+|+|.+.+
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 522 2211111111 13456778877774
No 306
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=87.87 E-value=1.5 Score=30.28 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHc
Q 020270 5 GEQLCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEA 59 (328)
Q Consensus 5 ~t~L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 59 (328)
.+-|..|+..|+.|+++.+++.+ .++ ...+..|+...+-+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 34567777778888887777654 222 3457777777777788887775
No 307
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=86.76 E-value=9.3 Score=33.09 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=54.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCC---EEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYD---GIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD---~i~~d~f 231 (328)
.....++|+|+|.|..........+ ...++|.++++++.+.+.- ....++++..++....... .+| .|+.+ -
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~-~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN-l 102 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLL-SLYERLEVIEGDALKVDLP--DFPKQLKVVSN-L 102 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHh-CcCCcEEEEECchhcCChh--HcCCcceEEEc-C
Confidence 3457899999999995554444333 4888999999999987643 2245677877776543322 355 44443 3
Q ss_pred ccchhhHHHHHHHHhh
Q 020270 232 GEYYEDLREFHQHLPK 247 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~ 247 (328)
|-+.+. +++.++..
T Consensus 103 Py~i~~--~il~~ll~ 116 (253)
T TIGR00755 103 PYNISS--PLIFKLLE 116 (253)
T ss_pred ChhhHH--HHHHHHhc
Confidence 444443 55555544
No 308
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=86.57 E-value=6.6 Score=36.29 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=61.4
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC-CCeeEEecccchhccCC-CCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK-NNVKIIFGRWQDNLSQL-ESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~-~~~~~~~g~w~~~~~~~-~~fD~i~~d~f~e 233 (328)
....++++++|+|......... ....+++|.+++.++...++-.... .++++..++..+..... ..||.|+.|+=-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 3468999999999843322222 2467889999999988776421111 26778888876654322 4599999997633
Q ss_pred chhhHHHHHHHHhhccCCCcEEE
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
... +++.+.+.. ++|++++-
T Consensus 312 G~~--~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 312 GIG--KELCDYLSQ-MAPKFILY 331 (374)
T ss_pred CCc--HHHHHHHHh-cCCCeEEE
Confidence 322 255555543 56765444
No 309
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.25 E-value=0.57 Score=44.15 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCceeeecccCCcchhHH-hccCCceEEee-ccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 156 GGGHILNIGFGMGLVDTAI-QQYSPVTHTIL-EAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~-e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
..+..|++|+|.|-..... ..+-..+-.+. ..|+..+++.++.|...-.. .. + -+.++....+||+|..--.--
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~--~~-~-s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIG--VL-G-SQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhh--hh-c-cccccCCccchhhhhcccccc
Confidence 3456899999988744332 23333344444 48999999999998432211 11 1 233344446789887766655
Q ss_pred chhhHH-HHHHHHhhccCCCcEEEE
Q 020270 234 YYEDLR-EFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 234 ~~~~l~-~~~~~~~~lL~~gG~~~~ 257 (328)
.|.... -++-++-|+|+|||.|..
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~ 217 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVL 217 (506)
T ss_pred cchhcccceeehhhhhhccCceEEe
Confidence 664332 355578999999999984
No 310
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=85.78 E-value=1.7 Score=38.18 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=60.8
Q ss_pred CceeeecccCCc-chhHHhc--cCCceEEeeccCHH---HHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 158 GHILNIGFGMGL-VDTAIQQ--YSPVTHTILEAHPE---VYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 158 ~~iLe~g~~~g~-~~~~~~~--~~~~~~~a~e~~~~---~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
.+|+-+|.|.=- +.-.... ........++..++ ..+.|.+.-.+-...++++.++-.+....+..||.||+-+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 478888887432 2222221 12233344455554 44444442112345678888877666666678999999888
Q ss_pred ccch-hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 232 GEYY-EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 232 ~e~~-~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
.++- ++=.++++++.+.++||+++.+-++.|. |+.+ |+.+-.-+|+ ||.+.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl-R~~L---Yp~vd~~~l~--gf~~~ 253 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL-RSFL---YPVVDPEDLR--GFEVL 253 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--GG-GGGS---S----TGGGT--TEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecchhh-HHHc---CCCCChHHCC--CeEEE
Confidence 6522 2334899999999999999998766555 5663 4443333555 98854
No 311
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=85.71 E-value=3.4 Score=34.48 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=61.9
Q ss_pred cCCCceeeecccCCcchhHHhc-cCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ-YSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~-~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
..+..|+.+-+|.|...-.... .......+.+-+|+.+++|.++-. .....+....++..++.. ...||-|..+..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 4567899999999984432232 455678899999999999977421 123457788888877776 456999988664
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
.. +. +|++.+..++++||++-|
T Consensus 179 -~~-~~--~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 179 -ES-SL--EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -SS-GG--GGHHHHHHHEEEEEEEEE
T ss_pred -HH-HH--HHHHHHHHHhcCCcEEEC
Confidence 32 22 788889999999998753
No 312
>PRK13699 putative methylase; Provisional
Probab=85.52 E-value=2.2 Score=36.40 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 238 LREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 238 l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+.+++.+++++|||||.+.+|++.-. . ......++++||.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~---~------~~~~~al~~~GF~ 90 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNR---V------DRFMAAWKNAGFS 90 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecccc---H------HHHHHHHHHCCCE
Confidence 35888999999999999987654211 1 0112247789997
No 313
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=85.35 E-value=2 Score=39.36 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=58.3
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHH----HHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCcc
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERM----LRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYGE 233 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L----~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e 233 (328)
..++.+|++.|-....+..........+..++.-+..- ...+.+.+.++ ..+.....+..-..||.+++-.-.+
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~--~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNF--VVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcce--ehhhhhcCCCCccccCcEEEEeecc
Confidence 35567777766554444433333333444333222111 11122222233 3333333444446799999988878
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+-.+.-.++++++++++|||.+..+
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 8888889999999999999999975
No 314
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=85.05 E-value=3.4 Score=36.73 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=54.3
Q ss_pred eeEEecccchhccCC---CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCC-----------cchhHHh
Q 020270 206 VKIIFGRWQDNLSQL---ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGG-----------NAFFHVV 271 (328)
Q Consensus 206 ~~~~~g~w~~~~~~~---~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~-----------~~~~~~~ 271 (328)
..+..|++-++.... ++||.|...-|-..-..+.++.+.+..+|+|||++.- +|+. ++...+-
T Consensus 240 fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN---lGPLlYHF~d~~g~~~~~siEl 316 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN---LGPLLYHFEDTHGVENEMSIEL 316 (369)
T ss_pred ccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe---ccceeeeccCCCCCcccccccc
Confidence 334445544444333 3699986655544444566999999999999999873 3433 2333333
Q ss_pred hhHHHHHHHHhcCCeEEEEEeeC
Q 020270 272 YCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 272 y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
--..+.+..+..||.++-+. .|
T Consensus 317 s~edl~~v~~~~GF~~~ke~-~I 338 (369)
T KOG2798|consen 317 SLEDLKRVASHRGFEVEKER-GI 338 (369)
T ss_pred cHHHHHHHHHhcCcEEEEee-ee
Confidence 33455666778999988888 66
No 315
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=84.85 E-value=6.1 Score=33.75 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHH-HHHcCCC---CCCCeeEEecccchhccCCCCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYER-MLRTGWG---EKNNVKIIFGRWQDNLSQLESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~-L~~~g~~---~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f 231 (328)
.+..+|++|+|+|...........-..++++-.++++.. +.+..-- ...+++ .-.|+++...+..+|.+|..-
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~~~d~~~~DvsfiS~- 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADIFPDFATFDVSFISL- 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHcCCCceeeeEEEeeh-
Confidence 456799999999995544433345678888877755554 4442210 112333 224666654445566555421
Q ss_pred ccchhhHHHHHHHHhhccCCCcEEE
Q 020270 232 GEYYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
.-.+..+..+|++ |.+.
T Consensus 152 -------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 152 -------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred -------HhHHHHHHHHhCc-CeEE
Confidence 1345566666666 5444
No 316
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.73 E-value=2.4 Score=38.46 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 240 EFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 240 ~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.++....++||+||+++|.+.-....+. ..+++..|+..|-.+++.++.-
T Consensus 277 ~iL~rgl~lLk~GG~lVYSTCSLnpieN-----EaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 277 RILRRGLRLLKVGGRLVYSTCSLNPIEN-----EAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCchhh-----HHHHHHHHHHhcCcccceeecc
Confidence 5666789999999999987544443322 5689999999999999888765
No 317
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=82.04 E-value=2.5 Score=29.08 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=33.9
Q ss_pred cHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 020270 39 TPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNA 92 (328)
Q Consensus 39 TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 92 (328)
.-|..|...|+.|+++.+++.+ .++ ...+..|+..-+.++++.|++.
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 4567788888888888888754 222 3467788888888888888774
No 318
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=81.97 E-value=14 Score=33.88 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=55.2
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCC----------------
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQL---------------- 220 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~---------------- 220 (328)
..+|++++|.|.......... ....++|.++..++.+.++-.. .-.++++..++..+.+..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 469999999998544433333 4788899999999888764211 1126778888865543221
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhh
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPK 247 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~ 247 (328)
..||.|+.|+=-..... ++.+.+.+
T Consensus 287 ~~~D~v~lDPPR~G~~~--~~l~~l~~ 311 (362)
T PRK05031 287 YNFSTIFVDPPRAGLDD--ETLKLVQA 311 (362)
T ss_pred CCCCEEEECCCCCCCcH--HHHHHHHc
Confidence 14899999986333222 44444433
No 319
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=81.69 E-value=7.9 Score=33.70 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=49.5
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
..+..++|+|+|.|......... .....++|.++.+++.+.+.-.. ..+++++.++..+.. ...||.|+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~--~~~~d~Vv~N 98 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVD--LPEFNKVVSN 98 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCC--chhceEEEEc
Confidence 34578999999999955443333 34789999999999998875322 456888888765543 2347777664
No 320
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=81.63 E-value=33 Score=30.09 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=64.7
Q ss_pred hhcCCCceeeecccCCcchhHHhc--cCCceEEeec----cCHHHHHHHHHcCCCCCCCe--eEEecccchhccCCCCCC
Q 020270 153 ICSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILE----AHPEVYERMLRTGWGEKNNV--KIIFGRWQDNLSQLESYD 224 (328)
Q Consensus 153 ~~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e----~~~~~~~~L~~~g~~~~~~~--~~~~g~w~~~~~~~~~fD 224 (328)
.+..+..|+|.|.|.|-...++.. ..+-+.+.-| ......+...++|+..+..+ +.+++.-..+ ....+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~--ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI--KSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc--cccccc
Confidence 446778899999999874433322 1122223333 33466777788887655332 2223322111 123589
Q ss_pred EEEEecCccchhhHHHHHHHHhhccCC-CcEEEEeccccCCcchhHHhhhHHHHH---HHHhcCCe
Q 020270 225 GIFFDTYGEYYEDLREFHQHLPKLLKP-GGIYSYFNGLCGGNAFFHVVYCHLVSL---ELENLGFS 286 (328)
Q Consensus 225 ~i~~d~f~e~~~~l~~~~~~~~~lL~~-gG~~~~~~~~g~~~~~~~~~y~~~~~~---~l~~~G~~ 286 (328)
+||.|- |..|..+. +++..||. ||++..|+- --+.+++ .|.++||.
T Consensus 180 aVFLDl-PaPw~AiP----ha~~~lk~~g~r~csFSP-----------CIEQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 180 AVFLDL-PAPWEAIP----HAAKILKDEGGRLCSFSP-----------CIEQVQRTCEALRSLGFI 229 (314)
T ss_pred eEEEcC-CChhhhhh----hhHHHhhhcCceEEeccH-----------HHHHHHHHHHHHHhCCCc
Confidence 999976 57776553 33446774 457663321 1125555 67788987
No 321
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=81.02 E-value=5.1 Score=35.18 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=43.8
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchh
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDN 216 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~ 216 (328)
..+..|+|+|+|+|..........+ ..+++|-.+++++.+.+.-. ..+++++.+++.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~--~~~v~~i~~D~~~~ 99 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA--EDNLTIIEGDALKV 99 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc--cCceEEEEChhhcC
Confidence 3456899999999995544444444 78999999999999987542 25788888887654
No 322
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=79.38 E-value=48 Score=29.92 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCceeeecccCCcch-----hHHhccCCceEEeeccCHHHHHHHHHcCC-CCCCCeeE--EecccchhccC-----C-C
Q 020270 156 GGGHILNIGFGMGLVD-----TAIQQYSPVTHTILEAHPEVYERMLRTGW-GEKNNVKI--IFGRWQDNLSQ-----L-E 221 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~-----~~~~~~~~~~~~a~e~~~~~~~~L~~~g~-~~~~~~~~--~~g~w~~~~~~-----~-~ 221 (328)
.+..|+|+|+|.+-.. .......+..|+++.-..+.++...+.=. ..-+.+.+ +.|+..+.+.. . .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 3457999999987631 12234457789999877777777666433 22344544 55554443221 1 2
Q ss_pred CCCEEEEecC--c-cchhhHHHHHHHHhh-ccCCCcEEEEeccccCCcchhHHhh
Q 020270 222 SYDGIFFDTY--G-EYYEDLREFHQHLPK-LLKPGGIYSYFNGLCGGNAFFHVVY 272 (328)
Q Consensus 222 ~fD~i~~d~f--~-e~~~~l~~~~~~~~~-lL~~gG~~~~~~~~g~~~~~~~~~y 272 (328)
....++|=.. . -...+-..|++.+.+ .|+|||.|..--.+..+.......|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY 210 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAY 210 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHh
Confidence 3567777443 1 123445689999999 9999999986544444444444444
No 323
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=79.23 E-value=6.3 Score=32.28 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=47.9
Q ss_pred CCCceeeecccCCcchhHH-hccCCceEEeeccCHHHHHHHH---Hc-CCCCCCCeeEEecccchhccCCCCCCEEEE--
Q 020270 156 GGGHILNIGFGMGLVDTAI-QQYSPVTHTILEAHPEVYERML---RT-GWGEKNNVKIIFGRWQDNLSQLESYDGIFF-- 228 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~-~~~~~~~~~a~e~~~~~~~~L~---~~-g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~-- 228 (328)
...+||++|+|.|...... +.+.+-....+.-.+..+++.. ++ |... .+++..-+..+.-.....||.|.-
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n--~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN--EIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc--ceeEEEeeccCCcccccceeEEeecC
Confidence 3348999999999833211 2223322445444444444432 21 2111 133322221111111123454432
Q ss_pred --ecCc---c-chhhHHHHHHHHhhccCCCcEEEEe
Q 020270 229 --DTYG---E-YYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 229 --d~f~---e-~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
|+.+ + .-..+.-+.+.+.++|+|||+|+..
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 2221 1 1122335677888999999999964
No 324
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=78.99 E-value=27 Score=31.96 Aligned_cols=87 Identities=16% Similarity=0.079 Sum_probs=56.1
Q ss_pred CceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccC------C----------
Q 020270 158 GHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQ------L---------- 220 (328)
Q Consensus 158 ~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~------~---------- 220 (328)
..++++++|+|.......... ...+++|.+++.++.+.++-... -.++++..++..+.... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 469999999998544444333 37889999999999887742111 12577888886654432 0
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhh
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPK 247 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~ 247 (328)
..||.|+.|+=-..+.. .+.+.+.+
T Consensus 278 ~~~d~v~lDPPR~G~~~--~~l~~l~~ 302 (353)
T TIGR02143 278 YNCSTIFVDPPRAGLDP--DTCKLVQA 302 (353)
T ss_pred CCCCEEEECCCCCCCcH--HHHHHHHc
Confidence 13799999996433322 55555433
No 325
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=78.38 E-value=5.6 Score=35.89 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=55.3
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccC--HHHHHHHHH-cCCCCCCCeeEEecccchhccCCCCCCEEEEec--
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAH--PEVYERMLR-TGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDT-- 230 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~--~~~~~~L~~-~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~-- 230 (328)
.++.||++|+|+|+.........+..-+|++.. .+....+.. ++ ...-++.+.|+-+++..+.+..|.|...=
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~--~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG--LEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC--ccceEEEeecceEEEecCccceeEEeehhhh
Confidence 457899999999995543333335556666632 233333433 23 23457888898666654467788886521
Q ss_pred CccchhhH-HHHHHHHhhccCCCcEEE
Q 020270 231 YGEYYEDL-REFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 231 f~e~~~~l-~~~~~~~~~lL~~gG~~~ 256 (328)
|...++.| ..++----+-|+|||.+-
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 11122211 122222234678888764
No 326
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=78.37 E-value=16 Score=30.92 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=71.3
Q ss_pred cCCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccc---hhccCCCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQ---DNLSQLESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~---~~~~~~~~fD~i~~d 229 (328)
..+.+||-+|...|-+-+... -+..-.-+++|-.+...+-|+... ....++-.+-++.. ......+.+|.||-|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-KKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-HHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-ccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 456789999999887332221 122335678887777777666532 33456655544422 222334679999999
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEEe-cc--ccCCcchhHHhhhHHHHHHHHhcCCeE
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSYF-NG--LCGGNAFFHVVYCHLVSLELENLGFSM 287 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~~-~~--~g~~~~~~~~~y~~~~~~~l~~~G~~~ 287 (328)
..--... +-+...+...||+||.+... .+ .-.+. .--+||... ...|++.||++
T Consensus 151 VaQp~Qa--~I~~~Na~~fLk~gG~~~i~iKa~siD~t~-~p~~vf~~e-~~~L~~~~~~~ 207 (229)
T PF01269_consen 151 VAQPDQA--RIAALNARHFLKPGGHLIISIKARSIDSTA-DPEEVFAEE-VKKLKEEGFKP 207 (229)
T ss_dssp -SSTTHH--HHHHHHHHHHEEEEEEEEEEEEHHHH-SSS-SHHHHHHHH-HHHHHCTTCEE
T ss_pred CCChHHH--HHHHHHHHhhccCCcEEEEEEecCcccCcC-CHHHHHHHH-HHHHHHcCCCh
Confidence 8833322 35666777899999988864 11 11111 112344442 23578889994
No 327
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=78.32 E-value=6 Score=32.54 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=69.9
Q ss_pred ceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCC-CCCCeeEEecccchhccCCCCCCEEEEecCccchh
Q 020270 159 HILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWG-EKNNVKIIFGRWQDNLSQLESYDGIFFDTYGEYYE 236 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~-~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~~ 236 (328)
+++++|.|.|...-...-- .....+.+|....-+.+|...-.. .-.+++++.++.++ ......||.|..-++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 6999999999832211111 223456666555444443321100 12369999999888 33335799999988854
Q ss_pred hHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 237 DLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 237 ~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
+..+...+..++++||++.++-|....... ..++..++..|..
T Consensus 127 -l~~l~~~~~~~l~~~G~~l~~KG~~~~~El------~~~~~~~~~~~~~ 169 (184)
T PF02527_consen 127 -LDKLLELARPLLKPGGRLLAYKGPDAEEEL------EEAKKAWKKLGLK 169 (184)
T ss_dssp -HHHHHHHHGGGEEEEEEEEEEESS--HHHH------HTHHHHHHCCCEE
T ss_pred -HHHHHHHHHHhcCCCCEEEEEcCCChHHHH------HHHHhHHHHhCCE
Confidence 447888889999999999988664322111 1344456667666
No 328
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=77.11 E-value=25 Score=31.20 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=61.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHc----CCCCCCCeeEEecccchhcc---CCCCCCEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRT----GWGEKNNVKIIFGRWQDNLS---QLESYDGIF 227 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~----g~~~~~~~~~~~g~w~~~~~---~~~~fD~i~ 227 (328)
..++++|++-+-+|.....--.+....-+.+......++...++ |.+ ...++++.++..+.+. .-..||+|.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 34689999988888733322223344455666555555555442 322 2456777666433322 225799999
Q ss_pred EecCc---cch---hhHHHHHHHHhhccCCCcEEEEeccccCCc
Q 020270 228 FDTYG---EYY---EDLREFHQHLPKLLKPGGIYSYFNGLCGGN 265 (328)
Q Consensus 228 ~d~f~---e~~---~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~ 265 (328)
.|+=+ ..+ .+.+++...+.++|+|||.+.+.+.-....
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC
Confidence 99862 122 345577888999999999998775555544
No 329
>PF14090 HTH_39: Helix-turn-helix domain
Probab=76.91 E-value=2 Score=29.09 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHhhccCCCcEEEEeccccCCcchhHHhhhHHHHH-HHHhcCCeEEEEEeeCCC
Q 020270 244 HLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSL-ELENLGFSMQLIPLPVKN 296 (328)
Q Consensus 244 ~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~-~l~~~G~~~~~~~~~~~~ 296 (328)
.+...|+.||.++.+.++ ..+++++..++. .|++.|+.|+-+.+.+.+
T Consensus 5 rIL~~L~~~~~it~~ea~-----~~~gi~~~~aRI~eLR~~G~~I~t~~~~~~~ 53 (70)
T PF14090_consen 5 RILAALRRGGSITTLEAR-----RELGIMRLAARISELRKKGYPIVTEWVTVPT 53 (70)
T ss_pred HHHHHHHcCCCcCHHHHH-----HHcCCCCHHHHHHHHHHcCCeeeEEEEEeec
Confidence 456677778877755432 233455555555 799999998777766643
No 330
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=74.76 E-value=12 Score=32.64 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=45.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccch
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQD 215 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~ 215 (328)
.....|+|+|.|.|.......... ..+.++|.+++.++.|.+.-. ...+++++.++.-+
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLK 87 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTT
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhc
Confidence 356789999999999665554434 789999999999999998543 56788998888543
No 331
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=74.54 E-value=25 Score=31.57 Aligned_cols=75 Identities=12% Similarity=-0.041 Sum_probs=50.8
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccC-CCCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQ-LESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~-~~~fD~i~~d~f 231 (328)
....+|++|+|.|......... .....+++.+++.++...++-... -.++++..++..+.... ...||.|+.|+-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 3578999999999854333332 246788999999998876542111 13578888887665432 246999999964
No 332
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=74.22 E-value=34 Score=30.97 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=71.4
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeec-cCHHHHHHHHHcCCCCCCCeeEEecc-cchhccCCCCCCEEEEecCc
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPEVYERMLRTGWGEKNNVKIIFGR-WQDNLSQLESYDGIFFDTYG 232 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~~~~~L~~~g~~~~~~~~~~~g~-w~~~~~~~~~fD~i~~d~f~ 232 (328)
++....+++|.|.|-.....-...| +.-.++ --|.+++.....+ +++....|. +++ .+. =|+|+.-=.-
T Consensus 176 ~~v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~-~P~---~daI~mkWiL 246 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQD-TPK---GDAIWMKWIL 246 (342)
T ss_pred ccCceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc----CCcceeccccccc-CCC---cCeEEEEeec
Confidence 3567899999999985543333222 233333 2233333332221 446666666 555 333 4677776566
Q ss_pred cchh--hHHHHHHHHhhccCCCcEEEEecc-ccC-Ccc---hhHHhhhH-HHHHHHHhcCCe
Q 020270 233 EYYE--DLREFHQHLPKLLKPGGIYSYFNG-LCG-GNA---FFHVVYCH-LVSLELENLGFS 286 (328)
Q Consensus 233 e~~~--~l~~~~~~~~~lL~~gG~~~~~~~-~g~-~~~---~~~~~y~~-~~~~~l~~~G~~ 286 (328)
.+|+ ++..|+.++.+.|+|+|.+..--. ... +.. ..+-+... +.++.+.+.|..
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke 308 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE 308 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee
Confidence 7884 578999999999999999887644 332 111 11112222 555566666765
No 333
>PRK11524 putative methyltransferase; Provisional
Probab=73.56 E-value=6.1 Score=34.95 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHhhccCCCcEEEEecc
Q 020270 238 LREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 238 l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
+.+++.++.++|||||.+.+++.
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcC
Confidence 35788999999999999997644
No 334
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=71.93 E-value=13 Score=31.66 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEE--ecccchhccCCCCCCEEEEecCccc
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKII--FGRWQDNLSQLESYDGIFFDTYGEY 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~--~g~w~~~~~~~~~fD~i~~d~f~e~ 234 (328)
....+.+|++.|.......+...-...-..-..++++.-.... .+.+... .++=+.....-.++|.|.. ..+.|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---dp~i~~~~~v~DEE~Ldf~ens~DLiis-SlslH 148 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---DPSIETSYFVGDEEFLDFKENSVDLIIS-SLSLH 148 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---CCceEEEEEecchhcccccccchhhhhh-hhhhh
Confidence 3568999999998665554444333333445667776554422 2333322 2222222223356887765 33568
Q ss_pred h-hhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 235 Y-EDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 235 ~-~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
| .++..-+.++-..|||+|.|. ..-+|++
T Consensus 149 W~NdLPg~m~~ck~~lKPDg~Fi-asmlggd 178 (325)
T KOG2940|consen 149 WTNDLPGSMIQCKLALKPDGLFI-ASMLGGD 178 (325)
T ss_pred hhccCchHHHHHHHhcCCCccch-hHHhccc
Confidence 8 456677888999999999987 3444444
No 335
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.83 E-value=2.3 Score=31.54 Aligned_cols=21 Identities=38% Similarity=0.789 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhccCCCcEEEE
Q 020270 237 DLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 237 ~l~~~~~~~~~lL~~gG~~~~ 257 (328)
-++.||++++++|+|||+|..
T Consensus 22 Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 22 GLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEE
Confidence 467999999999999999986
No 336
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=70.06 E-value=33 Score=32.54 Aligned_cols=134 Identities=14% Similarity=0.173 Sum_probs=74.0
Q ss_pred ceeeecccCCcchh--HHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEE----ecC-
Q 020270 159 HILNIGFGMGLVDT--AIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFF----DTY- 231 (328)
Q Consensus 159 ~iLe~g~~~g~~~~--~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~----d~f- 231 (328)
.++.+|+|..-... ...+... ...++-.+..++.++..++...+..++....-.......++||.|.- |++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 78999998765322 2233333 34556666777777776655566666666655555555566666643 222
Q ss_pred ----ccchhhH-HHHHHHHhhccCCCcEEEEecc---cc--CCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 232 ----GEYYEDL-REFHQHLPKLLKPGGIYSYFNG---LC--GGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 232 ----~e~~~~l-~~~~~~~~~lL~~gG~~~~~~~---~g--~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+..|+.. -..+.++.+++++||++...+- .. ....-....+.-..++.....++.-...-+++
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~ 201 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHR 201 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCeeeeecCccchhhhhhhccCcceEEEEecc
Confidence 3333321 2566789999999999887655 22 22222222223344444555555444444444
No 337
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=68.94 E-value=12 Score=31.07 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=35.8
Q ss_pred HHHHHHhhccCCCcEEEEe-ccccCC-----cchhHHhhhHHHHHHHHhcCCeEEEEE
Q 020270 240 EFHQHLPKLLKPGGIYSYF-NGLCGG-----NAFFHVVYCHLVSLELENLGFSMQLIP 291 (328)
Q Consensus 240 ~~~~~~~~lL~~gG~~~~~-~~~g~~-----~~~~~~~y~~~~~~~l~~~G~~~~~~~ 291 (328)
.++..+++.|||||+|..- |..-+. -...+-.-..+|...-..+||..+=+.
T Consensus 147 ~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 147 KVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 8999999999999999985 333221 111122233488888999999966554
No 338
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=67.83 E-value=75 Score=28.93 Aligned_cols=120 Identities=19% Similarity=0.110 Sum_probs=66.2
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHc-CCCCCCCeeEEec-ccchhccCCCCCCEEEEecC--
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRT-GWGEKNNVKIIFG-RWQDNLSQLESYDGIFFDTY-- 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~-g~~~~~~~~~~~g-~w~~~~~~~~~fD~i~~d~f-- 231 (328)
.+..+++==||+|-..- ..+..-+.-+++.-...+++-...+ .+..-........ +.......-.++|+|-.|..
T Consensus 197 ~G~~vlDPFcGTGgiLi-Eagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 197 RGELVLDPFCGTGGILI-EAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred cCCEeecCcCCccHHHH-hhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 44578998889887321 0222233444454444555443221 0110112222222 33333322235999999987
Q ss_pred ------ccch-hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEE
Q 020270 232 ------GEYY-EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 232 ------~e~~-~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
.+.. +-..++++.+.++|++||+++|... ... .--+.++||.|..
T Consensus 276 rst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~---------~~~~~~~~f~v~~ 327 (347)
T COG1041 276 RSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDP---------RHELEELGFKVLG 327 (347)
T ss_pred cccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----Ccc---------hhhHhhcCceEEE
Confidence 1222 2245899999999999999998665 111 1237889999543
No 339
>PRK04148 hypothetical protein; Provisional
Probab=64.05 E-value=43 Score=25.97 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCceeeecccCCc-chhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC-CCCCEEEEecCcc
Q 020270 157 GGHILNIGFGMGL-VDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL-ESYDGIFFDTYGE 233 (328)
Q Consensus 157 ~~~iLe~g~~~g~-~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f~e 233 (328)
+.+++++|+|.|. ....... .-....++.-+++.++.+.+.+ +....+++.+....+ ..+|.||.---|.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~~~y~~a~liysirpp~ 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNLEIYKNAKLIYSIRPPR 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHhC------CeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence 3679999999986 3322222 2346778888999999888765 455555544433332 5689999855443
No 340
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=62.02 E-value=31 Score=30.05 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=43.2
Q ss_pred hcCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEeccc
Q 020270 154 CSGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRW 213 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w 213 (328)
......|+|+|.|.|......-.. .....++|-.+.+++.|.+.-. ...+++++.|+.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~Da 85 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDA 85 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCch
Confidence 344678999999999955443333 3348999999999999998653 456788888774
No 341
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=61.78 E-value=34 Score=30.49 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=52.5
Q ss_pred cCCCceeeecccCCcchhHHhccC--CceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC----CCCCEEEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS--PVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL----ESYDGIFF 228 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~--~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~----~~fD~i~~ 228 (328)
..+..+++.++|.|-.....-... ....++++..+++++...+.-.. ..++.++.++..++...+ .++|+|++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 345689999999998444333332 35788899999999887653222 357888888876654333 26999999
Q ss_pred ecC
Q 020270 229 DTY 231 (328)
Q Consensus 229 d~f 231 (328)
|-=
T Consensus 97 DLG 99 (296)
T PRK00050 97 DLG 99 (296)
T ss_pred CCC
Confidence 864
No 342
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.74 E-value=97 Score=26.04 Aligned_cols=127 Identities=18% Similarity=0.206 Sum_probs=70.6
Q ss_pred cCCCceeeecccCCcchhHHhccC-CceEEeeccCHHHHHHHHHcCCCCCCCeeEEeccc---chhccCCCCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYS-PVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRW---QDNLSQLESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~-~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w---~~~~~~~~~fD~i~~d~ 230 (328)
..+.+||-+|+..|-+-+....-- .-..+++|=.+.+++.|+..- ....++-.+.++. +......+..|+||-|-
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 456789999998887333222211 234677786677777776643 3344554444442 22223346799999998
Q ss_pred CccchhhHHHHHHHHhhccCCCcE--EEE-eccccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGI--YSY-FNGLCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~--~~~-~~~~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
.--...+ =+...+...|++||. ++. ..+.-.+... -.||...++ .|++.||.
T Consensus 154 AQp~Qa~--I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp-~~vf~~ev~-kL~~~~f~ 208 (231)
T COG1889 154 AQPNQAE--ILADNAEFFLKKGGYVVIAIKARSIDVTADP-EEVFKDEVE-KLEEGGFE 208 (231)
T ss_pred CCchHHH--HHHHHHHHhcccCCeEEEEEEeecccccCCH-HHHHHHHHH-HHHhcCce
Confidence 8444443 556677778998883 332 1222222111 113332222 57888888
No 343
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=60.84 E-value=8 Score=33.19 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=27.8
Q ss_pred CCCCEEEEecCc----cch--hhHHHHHHHHhhccCCCcEEEE
Q 020270 221 ESYDGIFFDTYG----EYY--EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 221 ~~fD~i~~d~f~----e~~--~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..||+|+.-... ..| +-++.||+++.++|.|||+|+.
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 358888764431 223 4478999999999999999994
No 344
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=60.71 E-value=87 Score=25.19 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCCCCCCeeEEecccchh-ccCCCCCCEEEEecCccc--------------hhhHHHHHHHHhhccCCCcE
Q 020270 190 EVYERMLRTGWGEKNNVKIIFGRWQDN-LSQLESYDGIFFDTYGEY--------------YEDLREFHQHLPKLLKPGGI 254 (328)
Q Consensus 190 ~~~~~L~~~g~~~~~~~~~~~g~w~~~-~~~~~~fD~i~~d~f~e~--------------~~~l~~~~~~~~~lL~~gG~ 254 (328)
+.++.|.+.|+..-.++.- ...... ......||.|.|+ ||-. -.-++.||..+..+|+++|.
T Consensus 44 ~nl~~L~~~g~~V~~~VDa--t~l~~~~~~~~~~FDrIiFN-FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~ 120 (166)
T PF10354_consen 44 ENLEELRELGVTVLHGVDA--TKLHKHFRLKNQRFDRIIFN-FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGE 120 (166)
T ss_pred HHHHHHhhcCCccccCCCC--CcccccccccCCcCCEEEEe-CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 6777777767543222211 111111 1122569999994 4321 12357899999999999888
Q ss_pred EEEeccccCCcchhHHhhhH-HHHHHHHhcCCeE
Q 020270 255 YSYFNGLCGGNAFFHVVYCH-LVSLELENLGFSM 287 (328)
Q Consensus 255 ~~~~~~~g~~~~~~~~~y~~-~~~~~l~~~G~~~ 287 (328)
+-.-..-|.. |.. .++..=++.||.+
T Consensus 121 IhVTl~~~~p-------y~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 121 IHVTLKDGQP-------YDSWNIEELAAEAGLVL 147 (166)
T ss_pred EEEEeCCCCC-------CccccHHHHHHhcCCEE
Confidence 8776555544 322 2334445689885
No 345
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=57.58 E-value=20 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=16.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHH
Q 020270 4 EGEQLCEAARNGDIDKVKALI 24 (328)
Q Consensus 4 ~~t~L~~Aa~~g~~~~v~~LL 24 (328)
..+-+-.||+..+.++|+++=
T Consensus 76 ~q~LFElAC~~qkydiV~WI~ 96 (192)
T PF03158_consen 76 NQELFELACEEQKYDIVKWIG 96 (192)
T ss_pred HHHHHHHHHHHccccHHHHHh
Confidence 345567889999999999883
No 346
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=56.59 E-value=90 Score=27.58 Aligned_cols=129 Identities=20% Similarity=0.153 Sum_probs=76.4
Q ss_pred HHHHhhcCCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecccchhccC-C-CCC
Q 020270 149 HAKAICSGGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGRWQDNLSQ-L-ESY 223 (328)
Q Consensus 149 ~~~~~~~~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~w~~~~~~-~-~~f 223 (328)
+.......+..||++.++.|-...... -..+....+.+-++.-++.|.++--.. -.++.....+....... . ..|
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccccc
Confidence 333345667789999999998433222 233567788888887777665531100 23444544433333211 1 249
Q ss_pred CEEEEecC----------cc-ch----hh-------HHHHHHHHhhcc----CCCcEEEEe-ccccCCcchhHHhhhHHH
Q 020270 224 DGIFFDTY----------GE-YY----ED-------LREFHQHLPKLL----KPGGIYSYF-NGLCGGNAFFHVVYCHLV 276 (328)
Q Consensus 224 D~i~~d~f----------~e-~~----~~-------l~~~~~~~~~lL----~~gG~~~~~-~~~g~~~~~~~~~y~~~~ 276 (328)
|.|.-|+= |+ -| .+ -+++++.+.+.+ +|||+++|. |.+.+ +-...++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~------eENE~vV 231 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP------EENEEVV 231 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG------GGTHHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH------HHHHHHH
Confidence 99999986 11 01 11 147777899999 999999986 33222 2334488
Q ss_pred HHHHHhc
Q 020270 277 SLELENL 283 (328)
Q Consensus 277 ~~~l~~~ 283 (328)
+.-|++.
T Consensus 232 ~~fl~~~ 238 (283)
T PF01189_consen 232 EKFLKRH 238 (283)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 8888875
No 347
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=54.02 E-value=1.6e+02 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=24.7
Q ss_pred CCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHH
Q 020270 157 GGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLR 197 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~ 197 (328)
...++++|+|.|++....-.+ .+....|++..+..+++..+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e 190 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE 190 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH
Confidence 346999999999955433333 34445556666655554433
No 348
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.19 E-value=12 Score=32.55 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=45.8
Q ss_pred cEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCccccc
Q 020270 253 GIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLP 319 (328)
Q Consensus 253 G~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 319 (328)
++..|++++...|+.|=| |..|+..|+..|..++-++|.....-.++-|+-... +....-||
T Consensus 132 ~VVvY~TsLRgvRkTfE~--C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~---~~~~~~LP 193 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFED--CNAVRAILESFRVKVDERDVSMDSEFREELQELLGE---DEKAVSLP 193 (281)
T ss_pred eEEEEEcccchhhhhHHH--HHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhc---ccccCccC
Confidence 688888999999887554 679999999999999999998843333444544443 44566777
No 349
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=53.17 E-value=14 Score=32.76 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
....++.++..+.++|+|||++++.+...-.
T Consensus 219 EL~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 219 ELEELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 3466889999999999999999975544433
No 350
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=53.17 E-value=47 Score=29.59 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC--CCCCCeeEEecccchhccCCCCCCEEEEe
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW--GEKNNVKIIFGRWQDNLSQLESYDGIFFD 229 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~--~~~~~~~~~~g~w~~~~~~~~~fD~i~~d 229 (328)
..+..++|+|+|.|......... .....++|-.+++++.+.+.-. ....+++++.+++.+.. ...||.|..+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~--~~~~d~VvaN 108 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE--FPYFDVCVAN 108 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--ccccCEEEec
Confidence 45578999999999854333322 2457889999999998876421 12357888888865432 2357877654
No 351
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=52.93 E-value=32 Score=24.67 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred hhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCcc-cccceee
Q 020270 267 FFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTY-YLPVCQF 323 (328)
Q Consensus 267 ~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~ 323 (328)
.....||.-+++.|.+.|...|..+++... ...| |..+.++ ++|+..-
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~---~p~~------~~~~nP~g~vPvL~~ 67 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKR---KPED------LKDLAPGTQPPFLLY 67 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCC---CCHH------HHHhCCCCCCCEEEE
Confidence 555689999999999999998887777622 2355 6676665 7887653
No 352
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.85 E-value=2.7 Score=33.29 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=27.9
Q ss_pred CCCCEEEEecCccch--hhHHHHHHHHhhccCCCcEEEEe
Q 020270 221 ESYDGIFFDTYGEYY--EDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
.+.|+||..-+-||. ++...+..++++.|||||.+-..
T Consensus 46 ns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 457777665554433 45668888999999999998764
No 353
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=51.34 E-value=3.6 Score=39.61 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=35.6
Q ss_pred HHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCh
Q 020270 44 AAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVFEVLLNAGIQA 96 (328)
Q Consensus 44 Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 96 (328)
|+-.+....+-.|++.|+.++..|..+.+|+|+++..|..++.+.++....+.
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~ 455 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAI 455 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhh
Confidence 44444455566666677777777777777777777777777777776644443
No 354
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=50.37 E-value=2.2e+02 Score=26.76 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=70.4
Q ss_pred cCCCceeeecccCCcchhHHhc--cCCceEEeeccCH----HHHHHHHHcCCCCCCCeeEEecc-c-chhccCCCCCCEE
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHP----EVYERMLRTGWGEKNNVKIIFGR-W-QDNLSQLESYDGI 226 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~----~~~~~L~~~g~~~~~~~~~~~g~-w-~~~~~~~~~fD~i 226 (328)
..+.+||++.+-.|-..+.+.. ..+-..+|...+. .+...++..|.+. .-+....+. + ...+. .+||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~--~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP--GSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC--ccccee
Confidence 4567788887766653322211 2233445555333 3334455566331 111111221 1 11111 269999
Q ss_pred EEecCccc------------h---hh-------HHHHHHHHhhccCCCcEEEEec-cccCCcchhHHhhhHHHHHHHHhc
Q 020270 227 FFDTYGEY------------Y---ED-------LREFHQHLPKLLKPGGIYSYFN-GLCGGNAFFHVVYCHLVSLELENL 283 (328)
Q Consensus 227 ~~d~f~e~------------~---~~-------l~~~~~~~~~lL~~gG~~~~~~-~~g~~~~~~~~~y~~~~~~~l~~~ 283 (328)
..|+--.. + .+ -++++..+++++++||+++|.+ ..... =...+|+-.|+..
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~------ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE------ENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh------hhHHHHHHHHHhC
Confidence 99886111 1 11 2578888999999999999753 22221 2234777778776
Q ss_pred -CCeEEEEEeeC
Q 020270 284 -GFSMQLIPLPV 294 (328)
Q Consensus 284 -G~~~~~~~~~~ 294 (328)
-++.......+
T Consensus 391 p~~kL~p~~~~i 402 (460)
T KOG1122|consen 391 PEVKLVPTGLDI 402 (460)
T ss_pred CceEeccccccC
Confidence 66666666666
No 355
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=49.32 E-value=2.8 Score=39.64 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=64.6
Q ss_pred chhHHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCcHHHHHHH---hCcHHHHHHHHHcCCCCCccCCCCCCHH---H
Q 020270 3 KEGEQLCEAARNGDIDKVKALIGSG-ADVSYFDSDGLTPLMHAAK---LGHANLVKTLLEAGAPWNALSSSNLSAG---D 75 (328)
Q Consensus 3 ~~~t~L~~Aa~~g~~~~v~~LL~~g-ad~n~~d~~G~TpLh~Aa~---~g~~~~v~~Ll~~ga~~n~~d~~g~tpL---~ 75 (328)
+.+||+..|+..|.++.+..++..+ .++|-...+|.. |.+.. .|.++.+..|+..++..+..|..|..+. |
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~ 134 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLH 134 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccccCCCcccCccc
Confidence 5789999999999999999999754 567777777776 55554 3567888899999999998888887664 3
Q ss_pred HHHHcC---CHHHHHHHHHcC
Q 020270 76 FAMDSG---HQEVFEVLLNAG 93 (328)
Q Consensus 76 ~A~~~g---~~~~v~~Ll~~g 93 (328)
-|...+ ....++.|++.+
T Consensus 135 ~~~~~~~~~~r~~~~~l~e~~ 155 (528)
T KOG1595|consen 135 CAFAHGPNDLRPPVEDLLELQ 155 (528)
T ss_pred ccccCCccccccHHHHHHhcc
Confidence 333332 234455565544
No 356
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.69 E-value=61 Score=26.15 Aligned_cols=137 Identities=20% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCceeeecccC-CcchhHHhccCCce-EEeeccCHHHHHHHHHcCC-CCCCCeeEE-ecc---cchhccCC-CCCCEEEE
Q 020270 157 GGHILNIGFGM-GLVDTAIQQYSPVT-HTILEAHPEVYERMLRTGW-GEKNNVKII-FGR---WQDNLSQL-ESYDGIFF 228 (328)
Q Consensus 157 ~~~iLe~g~~~-g~~~~~~~~~~~~~-~~a~e~~~~~~~~L~~~g~-~~~~~~~~~-~g~---w~~~~~~~-~~fD~i~~ 228 (328)
+++|+|+|.|. |+......-..|.. ...-.|+.+-++-+.+--. +........ .-+ |+...... ..||.|..
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 36789998873 33222222233333 3334488777666554211 111222221 112 33333332 36888755
Q ss_pred ecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccc
Q 020270 229 DTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEG 305 (328)
Q Consensus 229 d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~ 305 (328)
....---+-...+.+.+-.+|+|.|+=-+|.-.-+. -..+++. .-..+||.|+-++ .-.+.+|+-
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~---sL~kF~d----e~~~~gf~v~l~e-----nyde~iwqr 174 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ---SLQKFLD----EVGTVGFTVCLEE-----NYDEAIWQR 174 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc---hHHHHHH----HHHhceeEEEecc-----cHhHHHHHH
Confidence 221000011226777888999998885544332222 1112222 2356899977665 235566643
No 357
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=48.59 E-value=24 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||..++..|++.|+..++.++.-
T Consensus 10 p~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 10 VQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred HHHHHHHHHHHHCCCceEEEECCC
Confidence 478899999999988766655543
No 358
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=48.07 E-value=53 Score=25.42 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCc
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDT 315 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 315 (328)
++...+-+.+.+.|++|.++...-.+|+.|.. .++...+..|..- .|..|.-.--++++.-+..-++.|-
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTt-------l~~~l~~~lg~~~---~v~SPTf~lv~~Y~~~~~~l~H~Dl 75 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTT-------LVQGLLQGLGIQG---NVTSPTFTLVNEYNEGNLMVYHFDL 75 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHH-------HHHHHHHHcCCCC---cccCCCeeeeeecccCCCcEEEech
Confidence 44567888888999999999999999999854 4445556667541 2222221112334322344567888
Q ss_pred cccc
Q 020270 316 YYLP 319 (328)
Q Consensus 316 ~~~~ 319 (328)
|||-
T Consensus 76 YRl~ 79 (133)
T TIGR00150 76 YRLA 79 (133)
T ss_pred hhcC
Confidence 8874
No 359
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=47.68 E-value=42 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||.-++..|++.|+..++.++.-
T Consensus 12 ~~C~ka~~~L~~~gi~~~~~di~~ 35 (73)
T cd03027 12 EDCTAVRLFLREKGLPYVEINIDI 35 (73)
T ss_pred hhHHHHHHHHHHCCCceEEEECCC
Confidence 468899999999998766555443
No 360
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=45.97 E-value=1.2e+02 Score=22.53 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=55.1
Q ss_pred eeeecccCCcchhHHhccCC--ceEEeeccCHHHHHHHHHcCCCCCCC-eeEEecccchh-ccCC--CCCCEEEEecCcc
Q 020270 160 ILNIGFGMGLVDTAIQQYSP--VTHTILEAHPEVYERMLRTGWGEKNN-VKIIFGRWQDN-LSQL--ESYDGIFFDTYGE 233 (328)
Q Consensus 160 iLe~g~~~g~~~~~~~~~~~--~~~~a~e~~~~~~~~L~~~g~~~~~~-~~~~~g~w~~~-~~~~--~~fD~i~~d~f~e 233 (328)
++++|++.|... ......+ .....++..+..+............. +....+..... .... ..||.+ ......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 899999999632 1111111 24444666776666633322111111 34444444431 2211 268888 433333
Q ss_pred chhhHHHHHHHHhhccCCCcEEEEeccc
Q 020270 234 YYEDLREFHQHLPKLLKPGGIYSYFNGL 261 (328)
Q Consensus 234 ~~~~l~~~~~~~~~lL~~gG~~~~~~~~ 261 (328)
++......+.++.+.++|+|.+.+....
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3332568999999999999999875443
No 361
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.71 E-value=1.8e+02 Score=26.76 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=69.6
Q ss_pred chHHHHHHHHhhcC-CCceeeecccCCcchhHHhccCCceEEeec-cCHHHHHHHHHcC-CCCCCCeeEEecccchhccC
Q 020270 143 KPLMEAHAKAICSG-GGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPEVYERMLRTG-WGEKNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 143 tpL~~a~~~~~~~~-~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~~~~~L~~~g-~~~~~~~~~~~g~w~~~~~~ 219 (328)
..|.....+...+. ...+++...++|+..-.+....+...+.++ -+|+-++.+.++- .+.......+..+...+...
T Consensus 38 RDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 38 RDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred cchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 44544444444433 678999999999943222222333244444 8998888877642 11122333444444444444
Q ss_pred C-CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 220 L-ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 220 ~-~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
. ..||.|=.|.|-..- +|.+-+.+..+.+|.+.+-
T Consensus 118 ~~~~fd~IDiDPFGSPa----PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 118 LHRAFDVIDIDPFGSPA----PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred cCCCccEEecCCCCCCc----hHHHHHHHHhhcCCEEEEE
Confidence 2 569999999994422 8999999999999998863
No 362
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=43.65 E-value=20 Score=25.18 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHhcCC---eEEEEEeeCCCCCCccccccccccccccCcccccce
Q 020270 271 VYCHLVSLELENLGF---SMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLPVC 321 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~---~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 321 (328)
.||.-++..|++.+. .++|+++++.. .....+.+.+++-. ....+|++
T Consensus 11 p~C~~ak~~L~~~~~~~~~i~~~~idi~~--~~~~~~~l~~~~g~-~~~tVP~i 61 (86)
T TIGR02183 11 PYCVRAKQLAEKLAIERADFEFRYIDIHA--EGISKADLEKTVGK-PVETVPQI 61 (86)
T ss_pred ccHHHHHHHHHHhCcccCCCcEEEEECCC--CHHHHHHHHHHhCC-CCCCcCeE
Confidence 478889999999875 36788888832 11122233334332 22467766
No 363
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=43.02 E-value=44 Score=26.99 Aligned_cols=98 Identities=21% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCceeeecccCCcchhHHhccC--CceEEeeccCHHHHHHHHHcCCCCCCCeeEEecc------cchhccCC----CCCC
Q 020270 157 GGHILNIGFGMGLVDTAIQQYS--PVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGR------WQDNLSQL----ESYD 224 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~--~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~------w~~~~~~~----~~fD 224 (328)
...++++|+.+|-......... ...-+++.-.+. ...+.+..+.++ .+.+...+ ..+|
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d 93 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFD 93 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCcc
Confidence 4789999999998544433333 455566652221 111223332222 11111111 4799
Q ss_pred EEEEecCc--------cchhh---HHHHHHHHhhccCCCcEEEEeccccCC
Q 020270 225 GIFFDTYG--------EYYED---LREFHQHLPKLLKPGGIYSYFNGLCGG 264 (328)
Q Consensus 225 ~i~~d~f~--------e~~~~---l~~~~~~~~~lL~~gG~~~~~~~~g~~ 264 (328)
.|..|.-+ +.+.. ....+.-+...|+|||.|+.-...+..
T Consensus 94 lv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 94 LVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred eeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 99999942 12221 223344566789999988864444433
No 364
>PRK10646 ADP-binding protein; Provisional
Probab=41.22 E-value=59 Score=25.85 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccC
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLD 314 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 314 (328)
-++.+.+-+.+.+.|++|-++...-.+|+.|.. .+|-..+.+|.+ .+|.-|.=.-=++++.-+..-+++|
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTt-------f~rgl~~~Lg~~---~~V~SPTFtlv~~Y~~~~~~l~H~D 80 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTT-------FSRGFLQALGHQ---GNVKSPTYTLVEPYTLDNLMVYHFD 80 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHH-------HHHHHHHHcCCC---CCCCCCCEeeEEEeeCCCCCEEEEe
Confidence 355668888999999999999988999999865 345566777875 1222221111123332233456667
Q ss_pred ccccc
Q 020270 315 TYYLP 319 (328)
Q Consensus 315 ~~~~~ 319 (328)
-|||.
T Consensus 81 lYRL~ 85 (153)
T PRK10646 81 LYRLA 85 (153)
T ss_pred eccCC
Confidence 77764
No 365
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=41.06 E-value=25 Score=31.50 Aligned_cols=26 Identities=50% Similarity=0.769 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhccCCCcEEEE--eccc
Q 020270 236 EDLREFHQHLPKLLKPGGIYSY--FNGL 261 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~--~~~~ 261 (328)
..++.+++.+.++|+|||++++ ||++
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcH
No 366
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=39.41 E-value=42 Score=29.06 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=47.7
Q ss_pred CCCeeEEecccchhccCC--CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHH
Q 020270 203 KNNVKIIFGRWQDNLSQL--ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLEL 280 (328)
Q Consensus 203 ~~~~~~~~g~w~~~~~~~--~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l 280 (328)
..+++++.|.+.+-++.. ..+-.++.|+ ..|+.-+..++.++..|.|||++.+- -.+. .- -.+.+.--.
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlYesT~~aLe~lyprl~~GGiIi~D-DY~~--~g----cr~AvdeF~ 226 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLYESTKDALEFLYPRLSPGGIIIFD-DYGH--PG----CRKAVDEFR 226 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEES-STTT--HH----HHHHHHHHH
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEec--cchHHHHHHHHHHHhhcCCCeEEEEe-CCCC--hH----HHHHHHHHH
Confidence 357899999887766643 4577778887 58888889999999999999999962 1111 11 012344446
Q ss_pred HhcCCeEEEEE
Q 020270 281 ENLGFSMQLIP 291 (328)
Q Consensus 281 ~~~G~~~~~~~ 291 (328)
++-|...+-++
T Consensus 227 ~~~gi~~~l~~ 237 (248)
T PF05711_consen 227 AEHGITDPLHP 237 (248)
T ss_dssp HHTT--S--EE
T ss_pred HHcCCCCccEE
Confidence 77887754443
No 367
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=39.37 E-value=86 Score=28.55 Aligned_cols=99 Identities=20% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHhhcCCCceeeecccCCcchhH--HhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEE
Q 020270 151 KAICSGGGHILNIGFGMGLVDTA--IQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFF 228 (328)
Q Consensus 151 ~~~~~~~~~iLe~g~~~g~~~~~--~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~ 228 (328)
......+.++.=.|+| |+-... +....-..-++....++-.+...+.|++.-.+.+ ...+...... .||.|+-
T Consensus 161 ~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~--~~~~~~~~~~--~~d~ii~ 235 (339)
T COG1064 161 KANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS--DSDALEAVKE--IADAIID 235 (339)
T ss_pred hcCCCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC--CchhhHHhHh--hCcEEEE
Confidence 3455667889999998 772222 2221226777788899999999999976322221 1112121111 2787765
Q ss_pred ecCccchhhHHHHHHHHhhccCCCcEEEEeccc
Q 020270 229 DTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGL 261 (328)
Q Consensus 229 d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~ 261 (328)
+-+ . .-+....++|++||+++..--.
T Consensus 236 -tv~-~-----~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 -TVG-P-----ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -CCC-h-----hhHHHHHHHHhcCCEEEEECCC
Confidence 444 2 5667788899999999965433
No 368
>PRK10742 putative methyltransferase; Provisional
Probab=39.35 E-value=77 Score=27.47 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=45.0
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcC---C-----CC--CCCeeEEecccchhccCC-CCCCEEE
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTG---W-----GE--KNNVKIIFGRWQDNLSQL-ESYDGIF 227 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g---~-----~~--~~~~~~~~g~w~~~~~~~-~~fD~i~ 227 (328)
.+|+.=+|.|...-..... -..-..+|.+|.+...|.+.- + .. ..+++++.++-.+.+... .+||.||
T Consensus 91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 7999988888722211111 223788999998887765421 1 11 135677777755544433 4699999
Q ss_pred EecC
Q 020270 228 FDTY 231 (328)
Q Consensus 228 ~d~f 231 (328)
+|.-
T Consensus 170 lDPM 173 (250)
T PRK10742 170 LDPM 173 (250)
T ss_pred ECCC
Confidence 9986
No 369
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=38.32 E-value=1.2e+02 Score=28.12 Aligned_cols=99 Identities=19% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCceeeecccCCcch-hHHhccCCceEEeec-cCHHHHHHHHHcC-C-CCCC-CeeEEecccchhcc-CCCCCCEEEEe
Q 020270 156 GGGHILNIGFGMGLVD-TAIQQYSPVTHTILE-AHPEVYERMLRTG-W-GEKN-NVKIIFGRWQDNLS-QLESYDGIFFD 229 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~-~~~~~~~~~~~~a~e-~~~~~~~~L~~~g-~-~~~~-~~~~~~g~w~~~~~-~~~~fD~i~~d 229 (328)
....+|+...++|+.. +....-.....+.++ .+++.++.+..+- . +... .+++...+...++. .-..||.|-.|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3457999999999933 222221233455444 8998888876641 0 1112 46666666655553 23579999999
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
+|... . .|++-+.+.++.||.+..-
T Consensus 129 PfGSp--~--pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 PFGSP--A--PFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -SS----H--HHHHHHHHHEEEEEEEEEE
T ss_pred CCCCc--c--HhHHHHHHHhhcCCEEEEe
Confidence 99442 2 8999999999999998763
No 370
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=37.45 E-value=1.6e+02 Score=24.28 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH-
Q 020270 8 LCEAARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSNLSAGDFAMDSGHQEVF- 86 (328)
Q Consensus 8 L~~Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~g~~~~v- 86 (328)
|..|++.+-+.+++..=+...+ + -...++-.-.||+..+.++|++.-+.=.- .+-.+-+.+|....+.+..
T Consensus 50 l~HAVk~nmL~ILqkyke~L~~-~--~~~~q~LFElAC~~qkydiV~WI~qnL~i-----~~~~~iFdIA~~~kDlsLys 121 (192)
T PF03158_consen 50 LYHAVKYNMLSILQKYKEDLEN-E--RYLNQELFELACEEQKYDIVKWIGQNLHI-----YNPEDIFDIAFAKKDLSLYS 121 (192)
T ss_pred HHHHHHcCcHHHHHHHHHHhhc-c--hhHHHHHHHHHHHHccccHHHHHhhccCC-----CCchhhhhhhhhccchhHHH
Confidence 5678888989988887664311 1 12356677889999999999999543111 1223566778777776653
Q ss_pred ---HHHHHc-----CCChhhhhh-HHHhhccCCC
Q 020270 87 ---EVLLNA-----GIQAELILG-TIARAGNKNS 111 (328)
Q Consensus 87 ---~~Ll~~-----g~~~~~~~~-~l~~a~~~~~ 111 (328)
.+++++ +.++..... -+..|+..|-
T Consensus 122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgl 155 (192)
T PF03158_consen 122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGL 155 (192)
T ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCC
Confidence 345554 333333333 5566666653
No 371
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=36.74 E-value=59 Score=31.13 Aligned_cols=95 Identities=17% Similarity=0.339 Sum_probs=58.0
Q ss_pred CCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC-CCCCEEEEecCccc
Q 020270 157 GGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL-ESYDGIFFDTYGEY 234 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~-~~fD~i~~d~f~e~ 234 (328)
.+.++++..+.|-...+.... --.+-++-...+..+..+-+.| +--...+|-+.++.. .+||.|.-+..-..
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRG------LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRG------LIGVYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcc------cchhccchhhccCCCCcchhheehhhhhhh
Confidence 356888888877754443332 2223333334555566666655 212233476655544 56888877765444
Q ss_pred h---hhHHHHHHHHhhccCCCcEEEE
Q 020270 235 Y---EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 235 ~---~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
| -++..++-++-|+|+|||.+.+
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEE
Confidence 4 3467888899999999999884
No 372
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=36.71 E-value=2.2e+02 Score=24.49 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=58.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeec-cCHHHHHHHHHcCCCCCCCeeEEecc-cchhccCC--CCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPEVYERMLRTGWGEKNNVKIIFGR-WQDNLSQL--ESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~~~~~L~~~g~~~~~~~~~~~g~-w~~~~~~~--~~fD~i~~d~ 230 (328)
-.++.+|++|.++|-.....-....-+.+|++ |+-++.-.|.+ .+++...+.. ...+.+.. +..|.+..|.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 45778999999999855444455566777887 77666655554 3445554443 22221111 2356777765
Q ss_pred CccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 231 YGEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
- +-.+..++..+..++++++-+..
T Consensus 153 S---FISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 153 S---FISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred e---hhhHHHHHHHHHHhcCCCceEEE
Confidence 3 33455777777888887766654
No 373
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=36.37 E-value=53 Score=27.27 Aligned_cols=46 Identities=30% Similarity=0.391 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcC-CeEE
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLG-FSMQ 288 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G-~~~~ 288 (328)
+-+.+++.++.++|+|||.+.++++--.... ......++.+| |.+.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~ 79 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR 79 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee
Confidence 4467889999999999999987765433322 23445566678 6643
No 374
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=36.02 E-value=67 Score=32.53 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEE
Q 020270 238 LREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQ 288 (328)
Q Consensus 238 l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~ 288 (328)
+.++|+.+.++|+++|++++|=+..+.- ..+.+++--++.+||.+.
T Consensus 567 ~~~a~~~~rEll~ddg~lv~y~ahk~~e-----aW~tlveA~~Rragl~iT 612 (875)
T COG1743 567 FREAFQAVRELLKDDGRLVTYYAHKAPE-----AWITLVEAGWRRAGLQIT 612 (875)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEeccCcc-----chHHHHHHHhhhcCceee
Confidence 4677888999999999999885554432 334566666888898854
No 375
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=35.85 E-value=1.2e+02 Score=29.36 Aligned_cols=93 Identities=27% Similarity=0.350 Sum_probs=55.3
Q ss_pred CceeeecccCCcc-h----hHHhccCCceEEeeccCHHHHHHHHHcCCCC-CCCeeEEecc---cchhccCCCCCCEEEE
Q 020270 158 GHILNIGFGMGLV-D----TAIQQYSPVTHTILEAHPEVYERMLRTGWGE-KNNVKIIFGR---WQDNLSQLESYDGIFF 228 (328)
Q Consensus 158 ~~iLe~g~~~g~~-~----~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~-~~~~~~~~g~---w~~~~~~~~~fD~i~~ 228 (328)
..|+-+|.|.|-. + ......+....+|+|.+|..+-.|.....+. ...++++.++ |+.. .+..|.+..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap---~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP---REQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc---hhhccchHH
Confidence 3467778888872 2 2233456889999999999998888754322 3567777666 6532 112232211
Q ss_pred ---ecC--ccchhhHHHHHHHHhhccCCCcEEE
Q 020270 229 ---DTY--GEYYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 229 ---d~f--~e~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
-.| .|.-. |=++-+-+.|||.|+.-
T Consensus 446 ELLGSFGDNELSP---ECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 446 ELLGSFGDNELSP---ECLDGAQKFLKPDGISI 475 (649)
T ss_pred HhhccccCccCCH---HHHHHHHhhcCCCceEc
Confidence 011 12222 55666777889887764
No 376
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.57 E-value=30 Score=28.67 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHhCcHHHHH-HHHHcCCC----CCccCCCCCCHHHHHHHc
Q 020270 36 DGLTPLMHAAKLGHANLVK-TLLEAGAP----WNALSSSNLSAGDFAMDS 80 (328)
Q Consensus 36 ~G~TpLh~Aa~~g~~~~v~-~Ll~~ga~----~n~~d~~g~tpL~~A~~~ 80 (328)
....|||-|+..++.+++- ++++..+. .|..|.+|-.+|.+|...
T Consensus 221 kTe~~LHk~iki~REDVl~LYfie~dakiP~~LNd~D~nG~~ALdiAL~~ 270 (280)
T KOG4591|consen 221 KTENPLHKAIKIEREDVLFLYFIEMDAKIPGILNDADHNGALALDIALCR 270 (280)
T ss_pred CCcchhHHhhhccccceeeehhhhccccccccccccCCCchHHHHHHHHH
Confidence 4456899999888877765 55565543 477788888899888765
No 377
>PRK09004 FMN-binding protein MioC; Provisional
Probab=35.22 E-value=1.7e+02 Score=22.87 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=44.9
Q ss_pred CCCCEEEEecCc----cchhhHHHHHHHHhhc--cCCCcEEEEeccccCCcchhHHhhhH---HHHHHHHhcCCeEEEEE
Q 020270 221 ESYDGIFFDTYG----EYYEDLREFHQHLPKL--LKPGGIYSYFNGLCGGNAFFHVVYCH---LVSLELENLGFSMQLIP 291 (328)
Q Consensus 221 ~~fD~i~~d~f~----e~~~~l~~~~~~~~~l--L~~gG~~~~~~~~g~~~~~~~~~y~~---~~~~~l~~~G~~~~~~~ 291 (328)
..+|.+.+-+.. +.=+..+.|++.+... --+|=+++ .-|+|.. .|+.||. .+...|++.|-..-...
T Consensus 45 ~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a-VfGlGds---~Y~~fc~~~~~ld~~l~~lGa~~v~~~ 120 (146)
T PRK09004 45 SASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA-AIGIGSS---EYDTFCGAIDKLEQLLKAKGAKQIGET 120 (146)
T ss_pred ccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE-EEeecCC---CHHHHhHHHHHHHHHHHHcCCeEeecc
Confidence 346666554431 1112334666655442 11333443 2344433 2789997 44458999998854444
Q ss_pred eeCCCCC---Cccccccccccccc
Q 020270 292 LPVKNCL---GEEVWEGVKHKYWQ 312 (328)
Q Consensus 292 ~~~~~~~---~~~~w~~~~~~~~~ 312 (328)
..+.... .|++++.+.+++|.
T Consensus 121 ~~~D~~~~~~~e~~~~~W~~~~~~ 144 (146)
T PRK09004 121 LKIDVLQHPIPEDPAEEWLKSWIN 144 (146)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHH
Confidence 4442211 24455555666554
No 378
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=35.17 E-value=59 Score=24.86 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=28.9
Q ss_pred eeeecccCCcchhHHhccCC-ceEEeeccCHHHHHHHHHc
Q 020270 160 ILNIGFGMGLVDTAIQQYSP-VTHTILEAHPEVYERMLRT 198 (328)
Q Consensus 160 iLe~g~~~g~~~~~~~~~~~-~~~~a~e~~~~~~~~L~~~ 198 (328)
++++|++.|..........+ ...++.|.++...+.+.++
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 68999999985443333333 3789999999999988775
No 379
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=34.54 E-value=76 Score=20.69 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Ccccccceee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQF 323 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~ 323 (328)
.||.-+++.|.+.|+..+...++... ++..++ .|-.. +...+|+...
T Consensus 10 ~~~~~~~~~L~~~~l~~~~~~v~~~~--~~~~~~----~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 10 PNPRRVRIFLAEKGIDVPLVTVDLAA--GEQRSP----EFLAKNPAGTVPVLEL 57 (74)
T ss_pred cchHHHHHHHHHcCCCceEEEeeccc--CccCCH----HHHhhCCCCCCCEEEe
Confidence 46778889999999887777766522 222221 12222 4557787754
No 380
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=34.34 E-value=45 Score=22.04 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCccccccee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLPVCQ 322 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 322 (328)
.+|..+++.|++.|...|...++..+ +++.++...+ . -+.-++|+..
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~--~~~~~~~~~~-~--~p~~~vP~l~ 56 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMK--GEHLKPEFLK-L--NPQHTVPTLV 56 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCcc--CCcCCHHHHh-h--CcCCCCCEEE
Confidence 35667888999999988877776622 3333333322 1 1334677663
No 381
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=34.29 E-value=41 Score=29.87 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCEEEEecCccch--hhHHHHHHHHhhccCCCcEEEE
Q 020270 221 ESYDGIFFDTYGEYY--EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..||+|+.-..--++ +....+++++.+.|+|||.|..
T Consensus 222 ~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred CCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 569998773221222 3355899999999999999874
No 382
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=34.24 E-value=55 Score=20.77 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.+|..++..|++.|+..++.+|..
T Consensus 10 ~~C~~~~~~L~~~~i~y~~~dv~~ 33 (60)
T PF00462_consen 10 PYCKKAKEFLDEKGIPYEEVDVDE 33 (60)
T ss_dssp HHHHHHHHHHHHTTBEEEEEEGGG
T ss_pred cCHHHHHHHHHHcCCeeeEccccc
Confidence 468899999999997755555444
No 383
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=33.97 E-value=69 Score=24.38 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCccccc
Q 020270 240 EFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLP 319 (328)
Q Consensus 240 ~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 319 (328)
.+-+.+...|++|.++...-.+|+.|.. .++-..+.+|.+- +|.-|.=.--+++++-+.+-+++|-|||-
T Consensus 3 ~la~~l~~~l~~g~vi~L~GdLGaGKTt-------f~r~l~~~lg~~~---~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~ 72 (123)
T PF02367_consen 3 RLAKKLAQILKPGDVILLSGDLGAGKTT-------FVRGLARALGIDE---EVTSPTFSLVNEYEGGNIPLYHFDLYRLE 72 (123)
T ss_dssp HHHHHHHHHHSS-EEEEEEESTTSSHHH-------HHHHHHHHTT--S-------TTTTSEEEEEETTEEEEEEE-TT-S
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHH-------HHHHHHHHcCCCC---CcCCCCeEEEEEecCCCceEEEeeccccC
Confidence 5667778889999999999999999865 4455567777762 23332211235565556666777888774
No 384
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=33.77 E-value=63 Score=27.69 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=35.3
Q ss_pred CceeeecccCCcc--hhHHhccCCceEEeeccCHHHHHHHHHc----CCCCC------CCeeEEecccchhccC-CCCCC
Q 020270 158 GHILNIGFGMGLV--DTAIQQYSPVTHTILEAHPEVYERMLRT----GWGEK------NNVKIIFGRWQDNLSQ-LESYD 224 (328)
Q Consensus 158 ~~iLe~g~~~g~~--~~~~~~~~~~~~~a~e~~~~~~~~L~~~----g~~~~------~~~~~~~g~w~~~~~~-~~~fD 224 (328)
..||+.=+|.|-- -...-|. ...++|.+|-+..++... .-+.. ..++++.++-.+.+.. ..+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 3799987777751 1112232 578889998777665421 01112 3677777775555542 36899
Q ss_pred EEEEecC
Q 020270 225 GIFFDTY 231 (328)
Q Consensus 225 ~i~~d~f 231 (328)
+||||+-
T Consensus 154 VVY~DPM 160 (234)
T PF04445_consen 154 VVYFDPM 160 (234)
T ss_dssp EEEE--S
T ss_pred EEEECCC
Confidence 9999997
No 385
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=33.23 E-value=1.4e+02 Score=27.71 Aligned_cols=70 Identities=26% Similarity=0.393 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEE-EEecCccch---hhHHHHHHHHhhccCCCcEEEEecccc
Q 020270 189 PEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGI-FFDTYGEYY---EDLREFHQHLPKLLKPGGIYSYFNGLC 262 (328)
Q Consensus 189 ~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i-~~d~f~e~~---~~l~~~~~~~~~lL~~gG~~~~~~~~g 262 (328)
++..+.| +.+. ..++++.+++.+.+... +++|.. ..|.+ .| +++.+..+++.+.++|||++.+-++.-
T Consensus 264 ~e~f~~l-r~~~---drv~i~t~si~~~L~~~~~~s~~~~vL~D~~--Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 264 PENFEAL-RARL---DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHM--DWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred HhHHHHH-hcCC---CeEEEEeccHHHHHHhCCCCCeeEEEecchh--hhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 3455555 3232 68999999999888754 567763 44554 12 456688889999999999999877765
Q ss_pred CC
Q 020270 263 GG 264 (328)
Q Consensus 263 ~~ 264 (328)
..
T Consensus 338 ~~ 339 (380)
T PF11899_consen 338 PP 339 (380)
T ss_pred CC
Confidence 43
No 386
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=33.21 E-value=1.6e+02 Score=26.19 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=41.5
Q ss_pred CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEecc--ccCCcchhHHhhhHHHHHHHHhcCCe
Q 020270 221 ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNG--LCGGNAFFHVVYCHLVSLELENLGFS 286 (328)
Q Consensus 221 ~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~--~g~~~~~~~~~y~~~~~~~l~~~G~~ 286 (328)
..||.||+-.- +.. -+-..+..+++|+|++++=++ +-..+..--.-|..-++-..+++||+
T Consensus 221 ~~Fd~ifvs~s--~vh---~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~ 283 (289)
T PF14740_consen 221 NFFDLIFVSCS--MVH---FLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFK 283 (289)
T ss_pred CCCCEEEEhhh--hHh---hcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCc
Confidence 46999999553 221 222246678899999998765 34445444456777777788999998
No 387
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.18 E-value=90 Score=24.59 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred EEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 254 IYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 254 ~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+..|.+.+...+..| -||..++..|++.|.. |++++|
T Consensus 2 VvlYttsl~giR~t~--~~C~~ak~iL~~~~V~--~~e~DV 38 (147)
T cd03031 2 VVLYTTSLRGVRKTF--EDCNNVRAILESFRVK--FDERDV 38 (147)
T ss_pred EEEEEcCCcCCCCcC--hhHHHHHHHHHHCCCc--EEEEEC
Confidence 445667888887665 6789999999999865 556666
No 388
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.80 E-value=2.3e+02 Score=23.32 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=40.4
Q ss_pred HhhccCCCcEEEEeccccCCc-chhHHhhhH---HHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCc-----
Q 020270 245 LPKLLKPGGIYSYFNGLCGGN-AFFHVVYCH---LVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDT----- 315 (328)
Q Consensus 245 ~~~lL~~gG~~~~~~~~g~~~-~~~~~~y~~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~----- 315 (328)
+..-..+|. ++-.++.+..| -..|.+||. ...+.-+..-++.-.+.++|...-..-+-..+-|--|+-|.
T Consensus 123 lv~R~~~Ga-IVNvSSqas~R~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~m 201 (245)
T KOG1207|consen 123 LVDRQIKGA-IVNVSSQASIRPLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKM 201 (245)
T ss_pred hhhccCCce-EEEecchhcccccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccch
Confidence 444455666 55566666655 345778997 33333333333333346666322222244455555666542
Q ss_pred -ccccceee
Q 020270 316 -YYLPVCQF 323 (328)
Q Consensus 316 -~~~~~~~~ 323 (328)
-|.|+-||
T Consensus 202 L~riPl~rF 210 (245)
T KOG1207|consen 202 LDRIPLKRF 210 (245)
T ss_pred hhhCchhhh
Confidence 27787777
No 389
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.28 E-value=4.6e+02 Score=24.84 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=64.3
Q ss_pred CCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCC-CCCCCeeEEecccchhccCC---CCCCEEEEecC
Q 020270 156 GGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGW-GEKNNVKIIFGRWQDNLSQL---ESYDGIFFDTY 231 (328)
Q Consensus 156 ~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~-~~~~~~~~~~g~w~~~~~~~---~~fD~i~~d~f 231 (328)
+...++++=||.|....... .....-.++|..++.++....+-. +.-.++.+..++.+++.... ..+|.|+.|.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 55679999999998543333 455678889999999988877532 22345888888877777665 46899999997
Q ss_pred ccchhhHHHHHHHHhhccCC
Q 020270 232 GEYYEDLREFHQHLPKLLKP 251 (328)
Q Consensus 232 ~e~~~~l~~~~~~~~~lL~~ 251 (328)
-..-.. ++.+.+.++-.+
T Consensus 372 R~G~~~--~~lk~l~~~~p~ 389 (432)
T COG2265 372 RAGADR--EVLKQLAKLKPK 389 (432)
T ss_pred CCCCCH--HHHHHHHhcCCC
Confidence 444443 566665555433
No 390
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=30.95 E-value=76 Score=20.71 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Ccccccceee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQF 323 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~ 323 (328)
.+|..+++.|.+.|...+...++... +++.++ .|... +.-.+|+...
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~~~--~~~~~~----~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDILK--GETRTP----EFLALNPNGEVPVLEL 57 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecCCC--cccCCH----HHHHhCCCCCCCEEEE
Confidence 45678888999999886666655411 222222 23333 3447787653
No 391
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=30.70 E-value=1.8e+02 Score=25.66 Aligned_cols=73 Identities=15% Similarity=0.308 Sum_probs=48.3
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCC--CCeeEEecccchhccCCCCCCEEEEec
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEK--NNVKIIFGRWQDNLSQLESYDGIFFDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~--~~~~~~~g~w~~~~~~~~~fD~i~~d~ 230 (328)
....-|||+|-|+|......-. .....+|+|-.|.++..|.+.+...+ ..++++.|+.-... +..||.+..+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe-~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d--~P~fd~cVsNl 131 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLE-AGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD--LPRFDGCVSNL 131 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHH-hcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--CcccceeeccC
Confidence 4566799999999984322211 23356899999999999999765554 67777777743221 23466655543
No 392
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=30.52 E-value=28 Score=31.19 Aligned_cols=66 Identities=26% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCe-EEEEEeeCCCCCCcccccccccc
Q 020270 236 EDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFS-MQLIPLPVKNCLGEEVWEGVKHK 309 (328)
Q Consensus 236 ~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~-~~~~~~~~~~~~~~~~w~~~~~~ 309 (328)
..++.++..+.++|+|||++++.+...-..+. |+..+++.--. .-...+++..+.....|+-+.+|
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRi--------VK~~f~~~~~~~~~p~~lp~~~~~~~~~~~~i~kk 284 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRI--------VKQFFRELAKSCKCPPGLPVCECGKHPKFKLITKK 284 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHH--------HHHHHHCCSSC------------------EESESS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHH--------HHHHHHHhcccCCCcccccccccccccceEEccCC
No 393
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=30.32 E-value=54 Score=21.80 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=15.5
Q ss_pred HHHHHHHcCCHHHHHHHHhC
Q 020270 7 QLCEAARNGDIDKVKALIGS 26 (328)
Q Consensus 7 ~L~~Aa~~g~~~~v~~LL~~ 26 (328)
++..+|..|+.+.+..+|++
T Consensus 2 ~vI~~A~~GD~~A~~~IL~~ 21 (65)
T PF12645_consen 2 EVIKAAKQGDPEAMEEILKH 21 (65)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 46677888888888888875
No 394
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=30.21 E-value=56 Score=21.89 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=31.3
Q ss_pred HhhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Cccccccee
Q 020270 270 VVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQ 322 (328)
Q Consensus 270 ~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~ 322 (328)
..||.-+++.|+..|...+++++...+ + +..|... +..++|+..
T Consensus 7 Sp~~~kv~~~l~~~~i~~~~~~v~~~~--~-------~~~~~~~~p~~~vPvL~ 51 (75)
T PF13417_consen 7 SPYSQKVRLALEEKGIPYELVPVDPEE--K-------RPEFLKLNPKGKVPVLV 51 (75)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEBTTS--T-------SHHHHHHSTTSBSSEEE
T ss_pred ChHHHHHHHHHHHcCCeEEEeccCccc--c-------hhHHHhhcccccceEEE
Confidence 478889999999999988888777622 1 2233333 566889876
No 395
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=29.53 E-value=1.4e+02 Score=24.05 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=41.8
Q ss_pred ceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcC--CCCCCCeeEEecccchhccCCC--C-CCEEEEecC
Q 020270 159 HILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTG--WGEKNNVKIIFGRWQDNLSQLE--S-YDGIFFDTY 231 (328)
Q Consensus 159 ~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g--~~~~~~~~~~~g~w~~~~~~~~--~-fD~i~~d~f 231 (328)
.|++.-+|.|-..-..... -..-.++|-++.-++.+..+- +....++.++.|+|.+....+. . +|.||.++=
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 3667777777633222222 335778889998888876642 2235578999999988876653 2 899998874
No 396
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=29.46 E-value=80 Score=21.73 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcC--CeEEEEEeeCCCCCCccccccccccccccCcccccceeecc
Q 020270 272 YCHLVSLELENLG--FSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLPVCQFLQ 325 (328)
Q Consensus 272 y~~~~~~~l~~~G--~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 325 (328)
.|..++..|+++. +.++++.|+| . .++.| .+||. |++||.....
T Consensus 12 LC~~a~~~L~~~~~~~~~~l~~vDI-~--~d~~l---~~~Y~----~~IPVl~~~~ 57 (81)
T PF05768_consen 12 LCDEAKEILEEVAAEFPFELEEVDI-D--EDPEL---FEKYG----YRIPVLHIDG 57 (81)
T ss_dssp HHHHHHHHHHHCCTTSTCEEEEEET-T--TTHHH---HHHSC----TSTSEEEETT
T ss_pred hHHHHHHHHHHHHhhcCceEEEEEC-C--CCHHH---HHHhc----CCCCEEEEcC
Confidence 4667777788654 3477888888 3 34455 55776 5788876643
No 397
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=28.94 E-value=54 Score=27.80 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=35.8
Q ss_pred HHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCC
Q 020270 23 LIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAP 62 (328)
Q Consensus 23 LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~ 62 (328)
|++.|+.=|..|....||=-+|.+.|+.+.-+.|++.|+.
T Consensus 1 lle~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 1 LLEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred CcccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 4678888899999999999999999999999999998875
No 398
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=28.87 E-value=76 Score=26.35 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=28.8
Q ss_pred eeEEecccchhccCCCCCCEEEEecCccch--hhHHHHHHHHhhccCCCcEEEE
Q 020270 206 VKIIFGRWQDNLSQLESYDGIFFDTYGEYY--EDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 206 ~~~~~g~w~~~~~~~~~fD~i~~d~f~e~~--~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
+++...+.-+..+....||+|+.-----++ +.-+.+++.+.+.|+|||.|..
T Consensus 120 V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 120 VRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp EEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 445444433322333579999775442222 2335899999999999999985
No 399
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=28.86 E-value=3e+02 Score=24.79 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=63.6
Q ss_pred cchHHHHHHHHhhcCCCceeeecccCCcchhHHh--ccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccC
Q 020270 142 EKPLMEAHAKAICSGGGHILNIGFGMGLVDTAIQ--QYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQ 219 (328)
Q Consensus 142 ~tpL~~a~~~~~~~~~~~iLe~g~~~g~~~~~~~--~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~ 219 (328)
.|..+.-........+..+|=.|..-|+-....+ ...-....+.-...+-.+.+.+.|++.-.+ ....+|.+....
T Consensus 128 ~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~--y~~~~~~~~v~~ 205 (326)
T COG0604 128 LTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVIN--YREEDFVEQVRE 205 (326)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEc--CCcccHHHHHHH
Confidence 3444443333334557788888876666221111 111112333444555556888888763322 112235555443
Q ss_pred C---CCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccC
Q 020270 220 L---ESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCG 263 (328)
Q Consensus 220 ~---~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~ 263 (328)
+ ..+|.||- +--. +.+....+.|+++|+++++-..++
T Consensus 206 ~t~g~gvDvv~D-~vG~------~~~~~~l~~l~~~G~lv~ig~~~g 245 (326)
T COG0604 206 LTGGKGVDVVLD-TVGG------DTFAASLAALAPGGRLVSIGALSG 245 (326)
T ss_pred HcCCCCceEEEE-CCCH------HHHHHHHHHhccCCEEEEEecCCC
Confidence 3 24887765 3222 566678889999999999877763
No 400
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.83 E-value=68 Score=22.18 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||..++..|.+.|+. |++++|
T Consensus 12 p~C~~ak~~L~~~gI~--~~~idi 33 (81)
T PRK10329 12 VQCHATKRAMESRGFD--FEMINV 33 (81)
T ss_pred HhHHHHHHHHHHCCCc--eEEEEC
Confidence 5788999999999965 556666
No 401
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=28.59 E-value=18 Score=22.06 Aligned_cols=9 Identities=44% Similarity=0.818 Sum_probs=6.7
Q ss_pred cccccccCc
Q 020270 307 KHKYWQLDT 315 (328)
Q Consensus 307 ~~~~~~~~~ 315 (328)
-||||++-.
T Consensus 2 irky~wlvv 10 (53)
T PF10831_consen 2 IRKYWWLVV 10 (53)
T ss_pred cceehhHHH
Confidence 489999743
No 402
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=28.37 E-value=1.1e+02 Score=19.23 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Ccccccceee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQF 323 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~ 323 (328)
-+|..+++.|+..|...++..++... . ..+ ++... +...+|+...
T Consensus 10 ~~~~~~~~~l~~~~i~~~~~~~~~~~--~-~~~-----~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 10 PRSLRVRLALEEKGLPYELVPVDLGE--G-EQE-----EFLALNPLGKVPVLED 55 (71)
T ss_pred ccHHHHHHHHHHcCCCcEEEEeCCCC--C-CCH-----HHHhcCCCCCCCEEEE
Confidence 46778889999999887777666522 1 111 23332 5567887654
No 403
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=28.32 E-value=1.7e+02 Score=23.21 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccC
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLD 314 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 314 (328)
-++..+|-+.+.+.|++|.++...--+|+.|.. .+|=.++..|.+ ..|.-|.=.-=++++.-+.+-++.|
T Consensus 8 ~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTt-------f~rgi~~~Lg~~---~~V~SPTFtlv~~Y~~~~~~lyH~D 77 (149)
T COG0802 8 EEATLALGERLAEALKAGDVVLLSGDLGAGKTT-------LVRGIAKGLGVD---GNVKSPTFTLVEEYEEGRLPLYHFD 77 (149)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHH-------HHHHHHHHcCCC---CcccCCCeeeehhhcCCCCcEEEEe
Confidence 345668888899999999999999999999865 445567778863 1222211111133332244556667
Q ss_pred ccccc
Q 020270 315 TYYLP 319 (328)
Q Consensus 315 ~~~~~ 319 (328)
-|||.
T Consensus 78 lYRl~ 82 (149)
T COG0802 78 LYRLS 82 (149)
T ss_pred eeccC
Confidence 77664
No 404
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=27.92 E-value=76 Score=27.57 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=21.1
Q ss_pred CCCEEEEecCccchhhHHHHHHHHhhccCC
Q 020270 222 SYDGIFFDTYGEYYEDLREFHQHLPKLLKP 251 (328)
Q Consensus 222 ~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~ 251 (328)
..|+||||..|..++ -.++++.+.+..|.
T Consensus 106 ~vdGIFfDE~p~~~~-~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 106 RVDGIFFDEAPNDYA-NLPYYQNLYNYVKS 134 (253)
T ss_pred ccceEEEecCCCcHH-HHHHHHHHHHHHHh
Confidence 589999999988773 33666666666654
No 405
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=27.83 E-value=70 Score=20.99 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHhcCCeEEEEEee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLP 293 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~ 293 (328)
.||.-+++.|...|+..|+..++
T Consensus 10 p~~~rvr~~L~~~gl~~~~~~~~ 32 (71)
T cd03037 10 PFCVKARMIAGLKNIPVEQIILQ 32 (71)
T ss_pred cHhHHHHHHHHHcCCCeEEEECC
Confidence 67889999999999986665543
No 406
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=27.67 E-value=13 Score=35.92 Aligned_cols=60 Identities=28% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCCccCCCC
Q 020270 11 AARNGDIDKVKALIGSGADVSYFDSDGLTPLMHAAKLGHANLVKTLLEAGAPWNALSSSN 70 (328)
Q Consensus 11 Aa~~g~~~~v~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g 70 (328)
|+-.+....+-.|++.++.++..|..|.||+|+++..|..++++.++....+.+.....+
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~~ 462 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVNG 462 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhcccccc
Confidence 555666667777888889999999999999999999999999999988655555444333
No 407
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=27.67 E-value=75 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Ccccccceee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQF 323 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~ 323 (328)
.||.-+++.|.+.|+..|+..++... + ...|... +.-++|+...
T Consensus 10 p~~~rv~~~L~~~gl~~e~~~v~~~~--~-------~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 10 PYAMRARMALLLAGITVELREVELKN--K-------PAEMLAASPKGTVPVLVL 54 (71)
T ss_pred cHHHHHHHHHHHcCCCcEEEEeCCCC--C-------CHHHHHHCCCCCCCEEEE
Confidence 46778899999999987777766621 1 2345444 3347787754
No 408
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.24 E-value=60 Score=28.94 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHhhccCCCcEEEEecc
Q 020270 235 YEDLREFHQHLPKLLKPGGIYSYFNG 260 (328)
Q Consensus 235 ~~~l~~~~~~~~~lL~~gG~~~~~~~ 260 (328)
...++.++..+..+|+|||++++.+.
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 45678999999999999999997544
No 409
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=65 Score=27.04 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=30.3
Q ss_pred hhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccCcccccceee
Q 020270 272 YCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLPVCQF 323 (328)
Q Consensus 272 y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 323 (328)
+++.+|+.+.-+| |+|++..+.. ++. |..++.+ .|-..||+...
T Consensus 14 ~ae~iR~lf~~a~--v~fEd~r~~~--~~~-w~~~K~~---~pfgqlP~l~v 57 (206)
T KOG1695|consen 14 LAEPIRLLFAYAG--VSFEDKRITM--EDA-WEELKDK---MPFGQLPVLEV 57 (206)
T ss_pred hHHHHHHHHHhcC--CCcceeeecc--ccc-hhhhccc---CCCCCCCEEeE
Confidence 3456677777777 4577877722 333 9999888 77778887654
No 410
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=26.69 E-value=72 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
-||..++..|++.|+..+ ++++
T Consensus 12 p~C~~ak~~L~~~~i~~~--~~~v 33 (72)
T cd03029 12 PFCARAKAALQENGISYE--EIPL 33 (72)
T ss_pred HHHHHHHHHHHHcCCCcE--EEEC
Confidence 468889999999987654 5555
No 411
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=26.42 E-value=4e+02 Score=23.51 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=52.5
Q ss_pred HhhcCCCceeeecccCCc--chhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEEE
Q 020270 152 AICSGGGHILNIGFGMGL--VDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGIF 227 (328)
Q Consensus 152 ~~~~~~~~iLe~g~~~g~--~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i~ 227 (328)
+....+..++=.|...++ .....-...-..-++.....+-.+.+.+.|++.-..... ...+....... ..+|.++
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKT-VKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccc-cccHHHHHHHhCCCCeEEEE
Confidence 334456677777754333 211111111123344456677788888888642111110 01233322221 2477655
Q ss_pred EecCccchhhHHHHHHHHhhccCCCcEEEEeccc
Q 020270 228 FDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGL 261 (328)
Q Consensus 228 ~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~ 261 (328)
|+... ..++...+.++++|+++.+...
T Consensus 213 -d~~G~------~~~~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 213 -DNVGG------EFSNTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred -ECCCH------HHHHHHHHHhCcCcEEEEecch
Confidence 66533 3457788899999999987543
No 412
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=25.72 E-value=1.9e+02 Score=24.47 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=39.0
Q ss_pred CCCCEEEEecC----ccchhhHHHHHHHHhhccCCCcE-----EEEeccccCCcchhHHhhhH--HHHHHHHhcCCe-EE
Q 020270 221 ESYDGIFFDTY----GEYYEDLREFHQHLPKLLKPGGI-----YSYFNGLCGGNAFFHVVYCH--LVSLELENLGFS-MQ 288 (328)
Q Consensus 221 ~~fD~i~~d~f----~e~~~~l~~~~~~~~~lL~~gG~-----~~~~~~~g~~~~~~~~~y~~--~~~~~l~~~G~~-~~ 288 (328)
+.||+|-+.-. |..- +-.+...++.+.|+|+|. +-...-...+... -|.. ..+..|...||. ++
T Consensus 103 e~FdvIs~SLVLNfVP~p~-~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS---Ry~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 103 EKFDVISLSLVLNFVPDPK-QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS---RYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred cceeEEEEEEEEeeCCCHH-HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc---cccCHHHHHHHHHhCCcEEEE
Confidence 56998876443 3322 234778899999999998 3333222222111 2333 445579999999 44
Q ss_pred EE
Q 020270 289 LI 290 (328)
Q Consensus 289 ~~ 290 (328)
++
T Consensus 179 ~~ 180 (219)
T PF11968_consen 179 YK 180 (219)
T ss_pred EE
Confidence 43
No 413
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=25.59 E-value=74 Score=21.67 Aligned_cols=22 Identities=18% Similarity=0.637 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||..+++.|++.|+..+ ++++
T Consensus 19 p~C~~ak~~L~~~gi~y~--~idi 40 (79)
T TIGR02190 19 PFCAKAKATLKEKGYDFE--EIPL 40 (79)
T ss_pred HhHHHHHHHHHHcCCCcE--EEEC
Confidence 478899999999986644 5555
No 414
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=25.05 E-value=87 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||..++..|++.|+..+ +++|
T Consensus 11 p~C~~ak~~L~~~~i~~~--~i~i 32 (75)
T cd03418 11 PYCVRAKALLDKKGVDYE--EIDV 32 (75)
T ss_pred hHHHHHHHHHHHCCCcEE--EEEC
Confidence 578899999999987554 5555
No 415
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.90 E-value=1.1e+02 Score=24.25 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCceeeecccCCcchhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCCCCCCEEEEecCc----
Q 020270 157 GGHILNIGFGMGLVDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQLESYDGIFFDTYG---- 232 (328)
Q Consensus 157 ~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~~~fD~i~~d~f~---- 232 (328)
++.+.++|+|.|.......-..+-......-.|+.++..-.+.-.-...+.+.+....+..+....||....+.--
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTKK 128 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCccc
Confidence 5789999999998553333344555566667788888776543222334444444444433333456665554431
Q ss_pred cchhhHHHHHHHHhhcc
Q 020270 233 EYYEDLREFHQHLPKLL 249 (328)
Q Consensus 233 e~~~~l~~~~~~~~~lL 249 (328)
.+ .|+ +|.+....+.
T Consensus 129 ~~-aDm-~fv~~al~~~ 143 (185)
T KOG3420|consen 129 KG-ADM-EFVSAALKVA 143 (185)
T ss_pred cc-ccH-HHHHHHHHHH
Confidence 12 333 5555544443
No 416
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=24.60 E-value=43 Score=29.40 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=23.7
Q ss_pred CCCCEEEEecC----ccchhhHHHHHHHHhhccCCCcEEEE
Q 020270 221 ESYDGIFFDTY----GEYYEDLREFHQHLPKLLKPGGIYSY 257 (328)
Q Consensus 221 ~~fD~i~~d~f----~e~~~~l~~~~~~~~~lL~~gG~~~~ 257 (328)
..||+|+.--- .+.. -++++.++.+.|+|||.|..
T Consensus 201 ~~fD~IfCRNVLIYFd~~~--q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 201 GKFDLIFCRNVLIYFDEET--QERILRRFADSLKPGGLLFL 239 (268)
T ss_pred CCCCEEEEcceEEeeCHHH--HHHHHHHHHHHhCCCCEEEE
Confidence 45888644221 1112 23899999999999999984
No 417
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=24.31 E-value=93 Score=21.28 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=21.8
Q ss_pred hHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 268 FHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 268 ~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
-...||.-+++.|.+.|...+...+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~ 40 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEF 40 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecC
Confidence 345788899999999999977777665
No 418
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=24.15 E-value=98 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=24.1
Q ss_pred EEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCC
Q 020270 254 IYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVK 295 (328)
Q Consensus 254 ~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~ 295 (328)
+-+|++++.+.+...- =|.-++..|...|. +|++++|.
T Consensus 2 i~vY~ts~~g~~~~k~--~~~~v~~lL~~k~I--~f~eiDI~ 39 (92)
T cd03030 2 IKVYIASSSGSTEIKK--RQQEVLGFLEAKKI--EFEEVDIS 39 (92)
T ss_pred EEEEEecccccHHHHH--HHHHHHHHHHHCCC--ceEEEecC
Confidence 3456677777544321 14477788988765 57788873
No 419
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=24.11 E-value=4.3e+02 Score=22.08 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=65.8
Q ss_pred cCCCceeeecccCCcchhHHhcc-CCceEEeeccCHHHHHHHH-----------HcCCCCCCCeeEEecccchhc--cC-
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQY-SPVTHTILEAHPEVYERML-----------RTGWGEKNNVKIIFGRWQDNL--SQ- 219 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~-~~~~~~a~e~~~~~~~~L~-----------~~g~~~~~~~~~~~g~w~~~~--~~- 219 (328)
......+++|.|.|-.-....-. .--.-..+|-.++..+... ..|. ....+.+..|++-+.. ..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCccccHhHhhh
Confidence 44567999999999732211111 2223577776654443221 1121 2345666666643211 11
Q ss_pred CCCCCEEEEecCccchhhHHHHHHHHhhccCCCcEEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCC
Q 020270 220 LESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPVKNCLG 299 (328)
Q Consensus 220 ~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~ 299 (328)
+..-|.||.+.+.-. +++..-+.+.+..||+|.++....-+.+.++. +..+......--.++++....+ +
T Consensus 120 ~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~--~ 189 (205)
T PF08123_consen 120 WSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIISTKPFCPRRRS-------INSRNLDDIFAILKVEELEYVE--G 189 (205)
T ss_dssp GHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-SS-TT-----------TTSTTSGGGCEEEEEEE--T--T
T ss_pred hcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEECCCcCCCCcc-------cchhhccChhhEEEEeecccCC--C
Confidence 134689999766211 23334446667788999999987666665433 1122233344345666666522 3
Q ss_pred cccccccccccc
Q 020270 300 EEVWEGVKHKYW 311 (328)
Q Consensus 300 ~~~w~~~~~~~~ 311 (328)
.=-|.+-.-.||
T Consensus 190 ~vSWt~~~~~yy 201 (205)
T PF08123_consen 190 SVSWTSNSGPYY 201 (205)
T ss_dssp -BTTCSSB-EEE
T ss_pred ceeecCCCcCEE
Confidence 345888777776
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.34 E-value=85 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=27.4
Q ss_pred cCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 262 CGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 262 g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
|......||+=..++.+.|+++||+|-.--+.|
T Consensus 5 gtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v 37 (128)
T cd02072 5 GVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLS 37 (128)
T ss_pred EEeCCchhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 344556788888999999999999988887777
No 421
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=23.12 E-value=1.8e+02 Score=25.19 Aligned_cols=132 Identities=17% Similarity=0.093 Sum_probs=65.8
Q ss_pred cCCCceeeecccCCcchh-HHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEEE-Eec
Q 020270 155 SGGGHILNIGFGMGLVDT-AIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGIF-FDT 230 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~-~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i~-~d~ 230 (328)
....+|+++|||.+-..- .........|++++-+..+++.+.....-..+..+.. +.++.... ...|+.+ +.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~---v~Dl~~~~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDAR---VRDLLSDPPKEPADLALLLKT 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEE---EE-TTTSHTTSEESEEEEET-
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCccee---EeeeeccCCCCCcchhhHHHH
Confidence 346789999999886332 2233445689999999988888876432222233332 33333221 2345533 333
Q ss_pred CccchhhHHHHHHHHhhccC-CCcEEEEe-ccccCCcchhHHhhhHHHHHHHHhcCCeEEE
Q 020270 231 YGEYYEDLREFHQHLPKLLK-PGGIYSYF-NGLCGGNAFFHVVYCHLVSLELENLGFSMQL 289 (328)
Q Consensus 231 f~e~~~~l~~~~~~~~~lL~-~gG~~~~~-~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~ 289 (328)
.|-....-+..--.+.+.++ |-=+.||- -++|+=+.-+...|....+..+.+-|-.++-
T Consensus 181 lp~le~q~~g~g~~ll~~~~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALRSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSCESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHhcchHHHHHHHhCCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeee
Confidence 33222111111122344444 44555554 6777766777888998888888888877443
No 422
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=23.12 E-value=5.8e+02 Score=23.30 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=51.4
Q ss_pred cCCCceeeecccCCcchhHHhccCCceEEeec-cCHHH--H----HHHHHcCCCCCCCeeEEecc-----cchhccCC-C
Q 020270 155 SGGGHILNIGFGMGLVDTAIQQYSPVTHTILE-AHPEV--Y----ERMLRTGWGEKNNVKIIFGR-----WQDNLSQL-E 221 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~~~~~~~~~~~~a~e-~~~~~--~----~~L~~~g~~~~~~~~~~~g~-----w~~~~~~~-~ 221 (328)
..+..++.+|||.|--...+.....-.++.+. +...+ . +-++..--.--..+.++.++ ..+.+..- .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 45567888999988633222222222333332 22111 1 11111110011234444444 33333221 3
Q ss_pred CCCEEEEecCc-----cchhhHHHHHHHHhhccCCCcEEE
Q 020270 222 SYDGIFFDTYG-----EYYEDLREFHQHLPKLLKPGGIYS 256 (328)
Q Consensus 222 ~fD~i~~d~f~-----e~~~~l~~~~~~~~~lL~~gG~~~ 256 (328)
+||+|-. .|. +..+..+-++..+.+.|+|||+|-
T Consensus 196 ~fDivSc-QF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 196 RFDIVSC-QFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred Ccceeee-eeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 4887644 333 444566788999999999999987
No 423
>PF12305 DUF3630: Protein of unknown function (DUF3630); InterPro: IPR022080 This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue D that may be functionally important.
Probab=23.01 E-value=69 Score=23.14 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=26.4
Q ss_pred hhHHhhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccccC
Q 020270 267 FFHVVYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLD 314 (328)
Q Consensus 267 ~~~~~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 314 (328)
.-+|.+...++..++..+.+| .+..| |.||+.|.++
T Consensus 20 ~D~d~F~~~a~~l~~~l~~~v-----------~Ek~~-gADrh~W~l~ 55 (94)
T PF12305_consen 20 FDFDSFPLWAEQLLQLLDATV-----------IEKQW-GADRHQWLLD 55 (94)
T ss_pred CCHHHHHHHHHHHHHhcCCEe-----------eeeec-CcceeEEEEE
Confidence 445677788888888888772 34556 7899999874
No 424
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=22.92 E-value=1.3e+02 Score=20.25 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCcccccccccccccc-Cccccccee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQL-DTYYLPVCQ 322 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~ 322 (328)
.+|.-++..|++.|+..+...+.... ++. + ...|-.. +..++|+..
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~~--~~~-~---~~~~~~~~p~~~vP~l~ 56 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDISK--GEQ-K---KPEFLKINPNGRIPAIV 56 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCcC--Ccc-c---CHHHHHhCcCCCCCEEE
Confidence 45678889999999987776666521 111 1 1122233 456888764
No 425
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=22.46 E-value=1.4e+02 Score=19.72 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.++..+++.|.+.|...+...++.
T Consensus 11 ~~s~~v~~~l~~~~i~~~~~~~~~ 34 (76)
T cd03053 11 TCVRRVLLCLEEKGVDYELVPVDL 34 (76)
T ss_pred hhHHHHHHHHHHcCCCcEEEEeCc
Confidence 467788899999998876666555
No 426
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=22.27 E-value=58 Score=16.13 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=11.0
Q ss_pred EeeCCCCCCcccccccc
Q 020270 291 PLPVKNCLGEEVWEGVK 307 (328)
Q Consensus 291 ~~~~~~~~~~~~w~~~~ 307 (328)
++..+.|--+.-|+|++
T Consensus 4 eL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 4 ELNMPYSKLEKLWEGVK 20 (20)
T ss_pred EEECCCCChHHhcCccC
Confidence 34454555678899874
No 427
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=22.03 E-value=48 Score=22.08 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=26.1
Q ss_pred chhHHhhhH-HHHHHHHhcCCeEEEEEeeCCC---CCCccccccccc
Q 020270 266 AFFHVVYCH-LVSLELENLGFSMQLIPLPVKN---CLGEEVWEGVKH 308 (328)
Q Consensus 266 ~~~~~~y~~-~~~~~l~~~G~~~~~~~~~~~~---~~~~~~w~~~~~ 308 (328)
..+|+-||- +.+..-+..||+-+...++=.+ ....+.|+|+-+
T Consensus 15 ~~~~eGyciDll~~la~~l~F~y~i~~~~Dg~yG~~~~~g~W~GmiG 61 (65)
T PF10613_consen 15 NDRYEGYCIDLLEELAEELNFTYEIYLVPDGKYGSKNPNGSWNGMIG 61 (65)
T ss_dssp GGGEESHHHHHHHHHHHHHT-EEEEEE-TTS--EEBETTSEBEHHHH
T ss_pred CccEEEEHHHHHHHHHHHcCCeEEEEECCCCCCcCcCCCCcCcCHHH
Confidence 445667786 6666677799998888875321 112468888743
No 428
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=21.76 E-value=1.3e+02 Score=29.90 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=39.5
Q ss_pred CCCCCEEEEecCccchhhHHHHHHHHhhccCCCc-EEEEeccccCCcchhHHhhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 220 LESYDGIFFDTYGEYYEDLREFHQHLPKLLKPGG-IYSYFNGLCGGNAFFHVVYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 220 ~~~fD~i~~d~f~e~~~~l~~~~~~~~~lL~~gG-~~~~~~~~g~~~~~~~~~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
+..|+.||...+ .|.+-...-+.+.++-++|| ++.....+.++++. +.....|...|++.++-
T Consensus 485 l~~~~~v~~~~~--~~~~~~~~e~~~~~~~~~G~~v~i~~~~~~~~~~~----------~~~~~lgv~~~~~~~~~ 548 (616)
T PF10131_consen 485 LPKYKVVYLSGP--SYKDESKAEKLVSKLARSGGKVVIDMPRIPDDRIA----------RQGEFLGVTGEPISIDN 548 (616)
T ss_pred hccceEEEecCC--CccchhHHHHHHHHHHhCCCEEEEEcCCCCcchhh----------cccccccceEEEeecCC
Confidence 346888888887 34443244456777889999 55555676777644 22444777766666554
No 429
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=21.59 E-value=1.1e+02 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||..++..|.+.|+..++.++..
T Consensus 11 p~c~kv~~~L~~~gi~y~~~~~~~ 34 (77)
T cd03040 11 PFCCKVRAFLDYHGIPYEVVEVNP 34 (77)
T ss_pred HHHHHHHHHHHHCCCceEEEECCc
Confidence 688899999999999877766543
No 430
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=21.49 E-value=80 Score=21.77 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHh-----cCCeEEEEEeeCCCCCCccccccccccccccCcccccce
Q 020270 271 VYCHLVSLELEN-----LGFSMQLIPLPVKNCLGEEVWEGVKHKYWQLDTYYLPVC 321 (328)
Q Consensus 271 ~y~~~~~~~l~~-----~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 321 (328)
.||.-++..|++ .|+. |+.+++.. .....+.+.+.+.. +.+..|.+
T Consensus 12 ~~C~~a~~~L~~l~~~~~~i~--~~~idi~~--~~~~~~el~~~~~~-~~~~vP~i 62 (85)
T PRK11200 12 PYCVRAKELAEKLSEERDDFD--YRYVDIHA--EGISKADLEKTVGK-PVETVPQI 62 (85)
T ss_pred hhHHHHHHHHHhhcccccCCc--EEEEECCC--ChHHHHHHHHHHCC-CCCcCCEE
Confidence 467788888888 5555 55555521 11122333333322 33567765
No 431
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.30 E-value=5e+02 Score=21.81 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=58.1
Q ss_pred HhhcCCCceeeecccCCcchhHHhc--cCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccc------hhccCC--C
Q 020270 152 AICSGGGHILNIGFGMGLVDTAIQQ--YSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQ------DNLSQL--E 221 (328)
Q Consensus 152 ~~~~~~~~iLe~g~~~g~~~~~~~~--~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~------~~~~~~--~ 221 (328)
.+...+..++++|+..|-....... .......+++-.| .+..+++..+.++.. .+...+ .
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p----------~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP----------MKPIPGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc----------cccCCCceEEeeeccCccHHHHHHHHcCCC
Confidence 3446678899999998874332111 1111133433111 123345666666532 222222 2
Q ss_pred CCCEEEEecCc--------cchhhH---HHHHHHHhhccCCCcEEEEeccccCCc
Q 020270 222 SYDGIFFDTYG--------EYYEDL---REFHQHLPKLLKPGGIYSYFNGLCGGN 265 (328)
Q Consensus 222 ~fD~i~~d~f~--------e~~~~l---~~~~~~~~~lL~~gG~~~~~~~~g~~~ 265 (328)
.+|.|..|..| .++..+ ...++.+...|+|||.|..=...|.+-
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 36999999997 222111 234445778999999999766666653
No 432
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=21.13 E-value=1.4e+02 Score=19.97 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhcCCeEEEEEeeC
Q 020270 272 YCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 272 y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
++.-+++.|.+.|...|+..++.
T Consensus 11 ~s~rv~~~L~e~gl~~e~~~v~~ 33 (73)
T cd03052 11 SSQKVRLVIAEKGLRCEEYDVSL 33 (73)
T ss_pred cHHHHHHHHHHcCCCCEEEEecC
Confidence 34567889999999988887766
No 433
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=20.70 E-value=5.4e+02 Score=22.52 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=50.2
Q ss_pred hcCCCceeeecccCCc--chhHHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccchhccCC--CCCCEEEEe
Q 020270 154 CSGGGHILNIGFGMGL--VDTAIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQDNLSQL--ESYDGIFFD 229 (328)
Q Consensus 154 ~~~~~~iLe~g~~~g~--~~~~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~~~~~~--~~fD~i~~d 229 (328)
...+..++=.|...++ .....-...-...++.....+-.+.+.+.|++.- +......+...+... ..+|.++ |
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~~~~gvd~vl-d 217 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAV--FNYKTVSLEEALKEAAPDGIDCYF-D 217 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHCCCCcEEEE-E
Confidence 3445667766654333 1111111111233445567778888888886321 111111232222111 3477665 5
Q ss_pred cCccchhhHHHHHHHHhhccCCCcEEEEec
Q 020270 230 TYGEYYEDLREFHQHLPKLLKPGGIYSYFN 259 (328)
Q Consensus 230 ~f~e~~~~l~~~~~~~~~lL~~gG~~~~~~ 259 (328)
+... ..+....+.++++|+++.+.
T Consensus 218 ~~g~------~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 NVGG------EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCCH------HHHHHHHHhhccCCEEEEEc
Confidence 6542 44577888899999998764
No 434
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=20.56 E-value=1.2e+02 Score=20.82 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeC
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~ 294 (328)
.||.-++..|.+.|+..+..++.-
T Consensus 12 PyC~~ak~~L~~~g~~~~~i~~~~ 35 (80)
T COG0695 12 PYCKRAKRLLDRKGVDYEEIDVDD 35 (80)
T ss_pred chHHHHHHHHHHcCCCcEEEEecC
Confidence 589999999999998855555544
No 435
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.34 E-value=87 Score=21.13 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHhcCCe--EEEEEeeC
Q 020270 271 VYCHLVSLELENLGFS--MQLIPLPV 294 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~--~~~~~~~~ 294 (328)
-||..++..|.+.|.. .++.++..
T Consensus 10 p~C~~~~~~L~~~~i~~~~~~~~v~~ 35 (84)
T TIGR02180 10 PYCKKAKEILAKLNVKPAYEVVELDQ 35 (84)
T ss_pred hhHHHHHHHHHHcCCCCCCEEEEeeC
Confidence 3577888899999976 55555554
No 436
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=20.24 E-value=1e+02 Score=20.24 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeeCCCCCCccccccccccccc--cCcccccceee
Q 020270 271 VYCHLVSLELENLGFSMQLIPLPVKNCLGEEVWEGVKHKYWQ--LDTYYLPVCQF 323 (328)
Q Consensus 271 ~y~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~ 323 (328)
.+|..++..|.+.|...++ +++.+ .+ ....+|.. .+...+|++.+
T Consensus 11 ~~C~~~~~~L~~~~~~~~~--idi~~--~~----~~~~~~~~~~~~~~~vP~i~~ 57 (77)
T TIGR02200 11 GYCAQLMRTLDKLGAAYEW--VDIEE--DE----GAADRVVSVNNGNMTVPTVKF 57 (77)
T ss_pred hhHHHHHHHHHHcCCceEE--EeCcC--CH----hHHHHHHHHhCCCceeCEEEE
Confidence 3577788889999976554 55522 11 12223322 35667888754
No 437
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=20.06 E-value=5.9e+02 Score=22.20 Aligned_cols=100 Identities=16% Similarity=0.105 Sum_probs=52.8
Q ss_pred cCCCceeeecccCCcchh---HHhccCCceEEeeccCHHHHHHHHHcCCCCCCCeeEEecccch---hccCCCCCCEEEE
Q 020270 155 SGGGHILNIGFGMGLVDT---AIQQYSPVTHTILEAHPEVYERMLRTGWGEKNNVKIIFGRWQD---NLSQLESYDGIFF 228 (328)
Q Consensus 155 ~~~~~iLe~g~~~g~~~~---~~~~~~~~~~~a~e~~~~~~~~L~~~g~~~~~~~~~~~g~w~~---~~~~~~~fD~i~~ 228 (328)
..+..+|-+|+..|-.-+ .+-+..- ..+|+|-.+-.-+.|+.. +...+++-.+-.+... .--.....|.||.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG-~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEG-CVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCc-eEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 456778999887776221 1222333 445555333222223322 2233344333222211 1111246899999
Q ss_pred ecCccchhhHHHHHHHHhhccCCCcEEEEe
Q 020270 229 DTYGEYYEDLREFHQHLPKLLKPGGIYSYF 258 (328)
Q Consensus 229 d~f~e~~~~l~~~~~~~~~lL~~gG~~~~~ 258 (328)
|..+..... -+.-.....||+||-|+.+
T Consensus 233 Dvaqpdq~R--ivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 DVAQPDQAR--IVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cCCCchhhh--hhhhhhhhhhccCCeEEEE
Confidence 988554433 4444667789999999875
Done!