BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020271
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure
Length = 203
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 61/89 (68%)
Query: 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS 267
+++ +VTY YY GR +F+ +F A++ LS+A +C+ S+ N RMIL YL+PVK+
Sbjct: 6 DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML 65
Query: 268 IGILPKDWLLEKYNLVEYSNIVQALRRGD 296
+G +P LL+KY+L++++ + +A+ G+
Sbjct: 66 LGHMPTVELLKKYHLMQFAEVTRAVSEGN 94
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 166 GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGR 224
G +R+ LYL +L IYF++ + LC ++ ++ + + F E+ ++ Y Y GR
Sbjct: 170 GKQRI-LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGR 228
Query: 225 LEVFNENFPAADQKLSYA---LINCNPQSEANIR---MILKYLIPVKLSIGILPK 273
+ N A + + A L+N ++A R IL Y+IP L +G + K
Sbjct: 229 YYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVK 283
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 111 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 153
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 99 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 141
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 94 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 136
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 98 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 140
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 99 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 141
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 58 ANRLIKQSDNYSPFAD-ITVPLFRSLQHYRTGNLVDAYLAFEK 99
AN ++ QS SP AD + V + H +TG ++DAY + K
Sbjct: 98 ANAIVWQSRQSSPIADQLKVDGHTEMIHEKTGLVIDAYFSATK 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,164,713
Number of Sequences: 62578
Number of extensions: 299415
Number of successful extensions: 864
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 10
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)