BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020271
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2
Length = 399
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 176/311 (56%), Gaps = 21/311 (6%)
Query: 9 AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
AH I YL + +A+ S+D S +L+SF P + + + ++ + + +
Sbjct: 2 AHITINQYLQQVYEAIDSRDGASCAELVSF--KHPHVANPRLQMASPEEKCQQVLEP--- 56
Query: 69 SPFADITVPLFRSLQHYRTGN--LVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAY 125
P+ ++ R Y GN ++AY +F++ F+ + E WAL +Y +A
Sbjct: 57 -PYDEMFAAHLRCT--YAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVAL 113
Query: 126 EIRVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTC 177
++RV A AD++L GKS + L+ A LM F V A + SK+ G L+L
Sbjct: 114 DLRVFANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVN 173
Query: 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
QLFKIYFK+ +HLC+ +IR+I+++ + D ++ +VTY YY GR +F+ +F A++
Sbjct: 174 QLFKIYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRVTYKYYVGRKAMFDSDFKQAEE 231
Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDL 297
LS+A +C+ S+ N RMIL YL+PVK+ +G +P LL+KY+L++++ + +A+ G+L
Sbjct: 232 YLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNL 291
Query: 298 RLLRHALEEHE 308
LL AL +HE
Sbjct: 292 LLLHEALAKHE 302
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2
SV=1
Length = 399
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 173/313 (55%), Gaps = 17/313 (5%)
Query: 9 AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
AH I YL + +A+ S+D + L+SF P + + L ++ + + +
Sbjct: 2 AHITINQYLQQVQEAIDSKDGFNCADLVSF--KHPHVANARLQLLSPEEKCQQVLEP--- 56
Query: 69 SPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAYEI 127
P+ ++ R + + V+AY +F++ F+ + E WAL +Y I ++
Sbjct: 57 -PYDEMFAAHLRCINAASNHDFVEAYKYQTLVVQSFLKSFQAHKEENWALPIMYSITLDL 115
Query: 128 RVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTCQL 179
R+ A AD++L GK + L+ A LM F V A + SK+ G L+L QL
Sbjct: 116 RIFANNADQQLVKKGKGKVGDMLEKAAEILMSCFRVCASDTRAAFEDSKKWGMLFLVNQL 175
Query: 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKL 239
FKIYFK+ +HLC+ +IR+I+++ EE+ +VT+ YY GR +F+ +F A++ L
Sbjct: 176 FKIYFKISKLHLCKPLIRAIDSSNFK--EEYTMAQRVTFKYYVGRKSMFDSDFKKAEEYL 233
Query: 240 SYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRL 299
S+A +C+ S+ N RMIL YL+PVK+ +G +P LL+KY+L++++ + +A+ G+L L
Sbjct: 234 SFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTIHLLKKYDLMQFAEVTKAVSEGNLLL 293
Query: 300 LRHALEEHEDQYV 312
L AL +HE ++
Sbjct: 294 LTEALTKHETFFI 306
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1
Length = 408
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 177/315 (56%), Gaps = 21/315 (6%)
Query: 9 AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
AH I YL + +A+ ++D SL +L+SF P + + + ++ + + +
Sbjct: 2 AHITINQYLQQVCEAIDTRDGASLAELVSF--KHPHVANPRLQMASPEEKCQQVLEP--- 56
Query: 69 SPFADITVPLFRSLQHYRTGN--LVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAY 125
P+ ++ R Y GN ++AY +F++ F+ + E WAL +Y +A
Sbjct: 57 -PYDEMFAAHLRCT--YAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVAL 113
Query: 126 EIRVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTC 177
++R+ A AD++L GKS + L+ A LM F V A + SK+ G L+L
Sbjct: 114 DLRIFANNADQQLVKKGKSKVGDMLEKAAELLMGCFRVCASDTRAGIEDSKKRGMLFLVN 173
Query: 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
QLFKIYFK+ +HLC+ +IR+I+++ + D ++ +VTY YY GR +F+ +F A++
Sbjct: 174 QLFKIYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRVTYRYYVGRKAMFDSDFKQAEE 231
Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDL 297
LS+A +C+ S+ N RM+L YL+PVK+ +G +P LL KY+L++++ + +A+ G+L
Sbjct: 232 YLSFAFEHCHRSSQKNKRMVLIYLLPVKMLLGHMPTIELLRKYHLMQFAEVTRAVSEGNL 291
Query: 298 RLLRHALEEHEDQYV 312
LL AL HE ++
Sbjct: 292 LLLNEALAAHETFFI 306
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1
Length = 399
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 177/315 (56%), Gaps = 21/315 (6%)
Query: 9 AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
AH I YL + +A+ ++D S +L+SF P + + + ++ + + +
Sbjct: 2 AHITINQYLQQVYEAIDTRDGASCAELVSF--KHPHVANPRLQMASPEEKCQQVLEP--- 56
Query: 69 SPFADITVPLFRSLQHYRTGN--LVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAY 125
P+ ++ R Y GN ++AY +F++ F+ + E WAL +Y +A
Sbjct: 57 -PYDEMFAAHLRCT--YAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVAL 113
Query: 126 EIRVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTC 177
++R+ A AD++L GKS + L+ A LM F V A + SK+ G L+L
Sbjct: 114 DLRIFANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVN 173
Query: 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
QLFKIYFK+ +HLC+ +IR+I+++ + D ++ ++TY YY GR +F+ +F A++
Sbjct: 174 QLFKIYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRITYKYYVGRKAMFDSDFKQAEE 231
Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDL 297
LS+A +C+ S+ N RMIL YL+PVK+ +G +P LL KY+L+++S + +A+ G+L
Sbjct: 232 YLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTIELLRKYHLMQFSEVTKAVSEGNL 291
Query: 298 RLLRHALEEHEDQYV 312
LL AL +HE ++
Sbjct: 292 LLLNEALAKHETFFI 306
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1
Length = 399
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 172/313 (54%), Gaps = 17/313 (5%)
Query: 9 AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
AH + YL + +A+ S+D +++SF P + + L+ ++ + + +
Sbjct: 2 AHITLNQYLQQVLEAIDSRDGSFCAEMMSF--KHPHVANPRLQLSSPEEKCQQLLEP--- 56
Query: 69 SPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAYEI 127
P+ ++ R + V+AY +F++ F+ + E WAL ++ + ++
Sbjct: 57 -PYDEMVAAHLRCTFAVSNHDFVEAYKCQTVVVQSFLKAFQAHKEENWALPIMFAVTLDL 115
Query: 128 RVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAGKG------SKRVGALYLTCQL 179
R+ A A++ L GK + L+ A LM F V A SK+ G L+L QL
Sbjct: 116 RIFANNAEQHLQQKGKGKVGDMLEKAAEQLMSCFRVCASDNRAGIDDSKKWGMLFLINQL 175
Query: 180 FKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKL 239
FKIYFK+ +HLC+ +IR+I+++ + D E+ +VTY YY GR +F+ +F A++ L
Sbjct: 176 FKIYFKINKLHLCKPLIRAIDSSNLKD--EYTMAQRVTYKYYVGRKAMFDSDFKPAEECL 233
Query: 240 SYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRL 299
S++ +C+ + N R+IL YL+PVK+ +G +P LL+KY+L++++++ +A+ G+L L
Sbjct: 234 SFSFTHCHRSCQRNKRLILIYLLPVKMLLGHMPTHQLLKKYDLMQFADVTRAVSEGNLLL 293
Query: 300 LRHALEEHEDQYV 312
L AL +HE ++
Sbjct: 294 LNAALVKHETFFI 306
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster
GN=PCID2 PE=1 SV=2
Length = 395
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 12/226 (5%)
Query: 91 VDAYLAFEKSANAFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELASNGKSP-EKL 148
++AY + A ++ + + W L +Y + ++R LA+ ++ G +P L
Sbjct: 79 MEAYTQQSAACGAVVRLLQQLKDENWCLPLMYRVCLDLRYLAQACEKH--CQGFTPGHVL 136
Query: 149 KAAGSFLMKVFGVLAGKG------SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETA 202
+ A +M F V A G +KR+G + L QLFKIYF++ +HLC+ +IR+I+
Sbjct: 137 EKAADCIMACFRVCAADGRASEEDTKRLGMMNLVNQLFKIYFRINKLHLCKPLIRAIDNC 196
Query: 203 RIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLI 262
IF + FP +++TY Y+ GR +F+ N+ AA Q LSYA NC + +N R+IL YL+
Sbjct: 197 -IFK-DSFPLPEQITYKYFVGRRAMFDSNYQAAVQYLSYAFSNCPDRFASNKRLILIYLV 254
Query: 263 PVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHE 308
PVK+ +G LP LL++Y+L+ + ++ A++ G++ + + E
Sbjct: 255 PVKMLLGYLPSKSLLQRYDLLLFLDLAMAMKAGNVNRFDEIVRDQE 300
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3
SV=1
Length = 403
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 17/294 (5%)
Query: 16 YLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADIT 75
++N F+ + +D L +LLS + +AD++ D RL D
Sbjct: 6 FVNSFTHPLQHEDHTPLLRLLSVHGKAAK--GIADTVGAI-DEKRLKNPGHTLPDLWDEI 62
Query: 76 VPLFRSLQH--YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAER 133
+ + Y+T + +A+ +K + F + F + +S+W L LY++ ++R LAE+
Sbjct: 63 AVRHCACVYALYKTKDYTEAFNQQDKLLSLFYRWFVD-QSSWVLPVLYMMLSDLRDLAEQ 121
Query: 134 ADREL-ASNGKSPEKLKAAGSFLMKVFGVLA------GKGSKRVGALYLTCQLFKIYFKL 186
AD+ + A GK P L+ + K F + A G+ S+R G + C K YFK+
Sbjct: 122 ADQTIHAETGKMPS-LEICTRTVSKAFSLCATDRQFKGEESRRRGVYHTACLTIKCYFKV 180
Query: 187 GTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245
G +LC+++IR++ + + P D+VT+ +Y G L N AD++LS+AL +
Sbjct: 181 GKPNLCKNIIRAVVSDPKTPSVDTAPLPDQVTWHFYIGMLAFLNGEDKKADEELSWALKH 240
Query: 246 CNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVE--YSNIVQALRRGDL 297
C ++ N +IL YLIP++L G P LL ++ +E ++ + A++ GD+
Sbjct: 241 CPADAKRNQELILTYLIPLRLLHGRFPSASLLSQHPRLELVFTPFINAIKNGDV 294
>sp|P0CR49|CSN12_CRYNB Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=CSN12 PE=3 SV=1
Length = 403
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 148/294 (50%), Gaps = 17/294 (5%)
Query: 16 YLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADIT 75
++N F+ + +D L +LLS + +AD++ D RL D
Sbjct: 6 FVNSFTHPLQHEDHTPLLRLLSVHGKAAK--GIADTVGAI-DEKRLKNPGHTLPDLWDEI 62
Query: 76 VPLFRSLQH--YRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAER 133
+ + Y+T + +A+ +K + F + F + +S+W L LY++ ++R LAE+
Sbjct: 63 AVRHCACVYALYKTKDYTEAFNQQDKLLSLFYRWFVD-QSSWVLPVLYMMLSDLRDLAEQ 121
Query: 134 ADREL-ASNGKSPEKLKAAGSFLMKVFGVLA------GKGSKRVGALYLTCQLFKIYFKL 186
AD+ + A GK P L+ + K F + A G+ S+R G + C K YFK+
Sbjct: 122 ADQTIHAETGKMPS-LEICTRTVSKAFSLCATDRQFKGEESRRRGVYHTACLTIKCYFKV 180
Query: 187 GTVHLCRSVIRSI-ETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALIN 245
G +LC+++IR++ + + P D+VT+ +Y G L N AD++LS+AL +
Sbjct: 181 GKPNLCKNIIRAVVSDPKTPSVDTAPLPDQVTWHFYIGMLAFLNGEDKKADEELSWALKH 240
Query: 246 CNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVE--YSNIVQALRRGDL 297
C ++ N +IL YLIP++L G P LL ++ +E ++ + A++ GD+
Sbjct: 241 CPADAKRNQELILTYLIPLRLLHGRFPSASLLSQHPRLELVFTPFINAIKNGDV 294
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 71 FADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVL 130
+ +I RS+ DA+ ++ N+F++ F W+ L+ ++ ++R++
Sbjct: 88 YNEIVAYRLRSISSLLDSKYYDAFRYLIEAINSFVKVFE----LWSQNILWRLSLDLRLM 143
Query: 131 AERADRELASNGKSPEKL--------KAAGSFLMKVFGVLAGK------GSKRVGALYLT 176
AE A + SN + +A+ + L K F SK+ AL +
Sbjct: 144 AELATLNVGSNDSNNSNNNVTIDYFEEASRTLLSKCFQAANADRTPNLAESKKNAALGVV 203
Query: 177 CQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAAD 236
QLF+IYFK+ + LC+++I+++E+ E +P +TY ++ GRL VFN + A
Sbjct: 204 NQLFQIYFKINNLKLCKNLIKTMESPGFPTLESYPLNQVITYRFFNGRLSVFNGQYKKAQ 263
Query: 237 QKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGD 296
++L YA C S N R+IL +L+P++L PK LLEK+ L ++ +IVQ+++ G+
Sbjct: 264 EELLYAFNKCPNDSIKNKRLILLFLVPMQLEQCKFPKKSLLEKFKLTQFIDIVQSIKSGN 323
Query: 297 LRLLRHALEEHEDQYV-LFIYFTLGSLQLSI 326
++ L H++ ++ IY L L++ +
Sbjct: 324 IKQFNECLSTHQNFFISKGIYLILEKLKIIV 354
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans
GN=C27F2.10 PE=3 SV=1
Length = 413
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 115 WALEALYVIAYEIRVLAERA------DRELASNGKSPEKLKAAG---SFLMKVFGVLAGK 165
W L Y + ++R L++ A D E SN S + A + V V A +
Sbjct: 112 WFLPIFYRLCTDLRWLSKGAEACVSGDDEGDSNANSFFESAAKAITECYRTCVSDVHAEE 171
Query: 166 GS-KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224
G+ K+V L +T QLF+IYF++ ++L + +IR+I+ + +F DKV Y Y+ GR
Sbjct: 172 GTTKKVAMLNMTNQLFQIYFQINKLNLLKPLIRAIDNCGSL-YHDFLMSDKVAYNYFLGR 230
Query: 225 LEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVE 284
+F+ + A++ L YA NC S +N R IL YLIPVK+ +G +P LL +Y L E
Sbjct: 231 KAMFDADLNLAEKSLLYAFRNCPADSMSNKRKILIYLIPVKMFLGHMPTSQLLHEYRLDE 290
Query: 285 YSNIVQALRRGDLRLLRHALEEHE 308
+ ++V ++ G+L L AL +E
Sbjct: 291 FQDVVAGVKDGNLAQLDGALAANE 314
>sp|Q4P8T5|CSN12_USTMA Protein CSN12 homolog OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=CSN12 PE=3 SV=1
Length = 454
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 129/279 (46%), Gaps = 43/279 (15%)
Query: 69 SPFADITVPLFRSLQHY--------------------RTGNLVDAYLAFEKSANAFIQEF 108
SP+ D+ V RSL + R+ L +A+ A+ +AF++ F
Sbjct: 61 SPWEDMCVNHLRSLYSFSLASSLPASASDAVDGEGKTRSERLGEAFDAYNSVVSAFVRYF 120
Query: 109 RNWESA-WALEALYVIAYEIRVLAERADREL----ASNGKSP-------EKLKAAGSFLM 156
WAL L ++ +R LA +AD SN +P ++L+ L
Sbjct: 121 STLTPGRWALPLLRILCLNLRWLAVQADSAAHIASVSNTWAPTRSTQPNKRLEECARQLN 180
Query: 157 KVF-GVLAGKG-----SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEF 210
K F +A + S++ G + +FK YF+L +V LCR+++R+I A + D +
Sbjct: 181 KAFSACIADRNADMHESRKWGTYEVVGMVFKTYFRLKSVGLCRNILRAINAADLPDLCAY 240
Query: 211 PKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGI 270
P+ +VT+ YY G L NE + A+ +L +L C+ + N +IL YLIPVKL G
Sbjct: 241 PRSQQVTFRYYVGVLAFLNEEYDHAELELQASLQMCHRCALINQGLILTYLIPVKLLKGS 300
Query: 271 LPKDWLLEKYN-----LVEYSNIVQALRRGDLRLLRHAL 304
LP LL+ L Y +ALR GD++ AL
Sbjct: 301 LPHPSLLDPTTPIGRKLAVYQPFTRALRTGDVKAFDQAL 339
>sp|Q4WJX0|CSN12_ASPFU Protein CSN12 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=csn12 PE=3 SV=1
Length = 455
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 155/318 (48%), Gaps = 38/318 (11%)
Query: 31 SLKQLLSFSSNSPSLLSLAD-SLNVFQ-DANRLIKQSDNYSPFADITVPLFRSL------ 82
S +LLSF + S S AD ++FQ + +L KQ N + DI ++++
Sbjct: 32 SPDRLLSFYNFSDSDHISADLRYSLFQANGVKLPKQEQN--GWVDIFAAYWKAVGEIVKF 89
Query: 83 -QHYRTGNLVDAYLAFEKSANAFIQEFRNWE-SAWALEALYVIAYEIRVLAERADRELAS 140
++ + + + A++ AN I+ + N+ AW + LYV+ +RV A +AD E++S
Sbjct: 90 EEYNPSASWAKVFDAWKNVANTLIRGYTNFGLQAWTVPCLYVVGKYLRVFAIKADTEISS 149
Query: 141 NG----------------KSPEKLKAAGSFLMKVFGVLAG-----KGSKRVGALYLTCQL 179
G + KL+ A + ++F + + S++ G T L
Sbjct: 150 KGAMAFGDQLQDDVAADFEKSAKLEEAARIINRMFTLCLSDRAPIEESRKWGIYNTTNLL 209
Query: 180 FKIYFKLGTVHLCRSVIR--SIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
FK YFKL +V L ++++R S +A + + E FPK VT+ YY G + +EN+ A++
Sbjct: 210 FKTYFKLNSVGLSKNLLRALSASSADLPELEAFPKSHIVTFKYYVGVIHFLDENYREAEE 269
Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKL-SIGILPKDWLLEKYNLVE--YSNIVQALRR 294
L+YA C+ + N +IL YL+P L + LP LL + +E + + +R+
Sbjct: 270 HLAYAWNMCHKGAFKNRELILTYLVPCHLVTTHTLPSQKLLAPFPRLEKLFRPLCDCIRK 329
Query: 295 GDLRLLRHALEEHEDQYV 312
GDL A+ E+++V
Sbjct: 330 GDLVGFDTAMFAGEEEFV 347
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae
GN=CBG18211 PE=3 SV=1
Length = 413
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 109/200 (54%), Gaps = 11/200 (5%)
Query: 115 WALEALYVIAYEIRVLAERA------DRELASNGKSPEKLKAAG---SFLMKVFGVLAGK 165
W L Y + ++R L++ A D E SN S + A + V V A +
Sbjct: 112 WFLPIFYRLCTDLRWLSKGAESCASGDDEGDSNANSFFESAAKAITECYRTCVSDVHAEE 171
Query: 166 G-SKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGR 224
G +K+V L +T QLF+IYF++ ++L + +IR+I+ + +F DKV Y Y+ GR
Sbjct: 172 GKTKKVAMLNMTNQLFQIYFQINKLNLLKPLIRAIDNCGPL-YNKFLMADKVAYNYFLGR 230
Query: 225 LEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVE 284
+F+ + A++ L YA NC +S +N R IL YLIPVK+ +G +P LL +Y L E
Sbjct: 231 KALFDGDLILAEKGLVYAFRNCPTESVSNKRKILVYLIPVKMFLGHMPTASLLHRYRLDE 290
Query: 285 YSNIVQALRRGDLRLLRHAL 304
+ +V A++ G L + +AL
Sbjct: 291 FQEVVAAVKDGHLGRVDNAL 310
>sp|Q7SD63|CSN12_NEUCR Protein CSN12 homolog OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-12
PE=3 SV=1
Length = 461
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 154/356 (43%), Gaps = 63/356 (17%)
Query: 20 FSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLF 79
FS+A SS+D L Q LS L ++ S DA +IK+ S F
Sbjct: 8 FSNAQSSRDGYQLAQTLSPDLPQQQLQAIWKSCG-HHDAQNVIKRGIQNSTSG------F 60
Query: 80 RSLQHYRTGNLVDAYLAFEKS------------ANAFIQEFRNWES-------------- 113
L D YLA+ K+ +++ + + W+
Sbjct: 61 EKLPKDEVQGWSDVYLAYWKAIGELLPALNQAPQSSWTKVYDAWKELLSALYRGYIGQGF 120
Query: 114 -AWALEALYVIAYEIRVLAERADRELASN------------------GKSPEKLKAAGSF 154
AW++ LYV+A +R A +AD E +N + +KL+
Sbjct: 121 EAWSIPCLYVVAKNLRFFALKADEERNNNVAAGDTSGQIFQDDFDPESEQNQKLEDCARQ 180
Query: 155 LMKVFGVLAG-----KGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR--IFDF 207
L ++F + + S++ G Y+ LFK YFKL + L +++++++ R +
Sbjct: 181 LNRIFTLCLNDRAPLEESRKWGIYYIINLLFKTYFKLNSASLSKNILKTLSAYRGDMPPL 240
Query: 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVK-L 266
FPK +VT+ YY G L EN+ A++ L+ A C+ + N +IL YL+P L
Sbjct: 241 SAFPKSQQVTFKYYEGVLCFLEENYFQAEEHLTQAWSLCHKDAMKNKELILTYLVPCHLL 300
Query: 267 SIGILPKDWLLEKYNLVE--YSNIVQALRRGDLRLLRHALEEHEDQYV-LFIYFTL 319
+ LP LLE Y ++ + + +++G+L AL++ ED++V IY TL
Sbjct: 301 TTHTLPSQKLLEPYPRLQKLFLPLSNCIKKGELHAFDLALQQGEDEFVKRRIYLTL 356
>sp|Q4IMN9|CSN12_GIBZE Protein CSN12 homolog OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=CSN12 PE=3 SV=2
Length = 455
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 72/365 (19%)
Query: 17 LNRFSDAVSSQDVVSLKQLLSF---SSNSPSLLSLADSLN---VFQDANRLIKQSDNYSP 70
+F++A S ++ L Q LS + + L+++ S N V D IK S +
Sbjct: 5 FQQFAEAHSLRNGYKLAQTLSPVPPADDPQRLMAVWRSTNSHSVKGDIKHFIKSSTAHK- 63
Query: 71 FADITVPLFRSLQHYRTGNLVDAY----------LAFEKSANAFIQEFRNWES------- 113
R L H T V+ Y LA E +++ + + W+
Sbjct: 64 ---------RKLDHDETTGWVEVYTSYWKAVSEILAGESGKSSWTKVYEAWKELTSVLIR 114
Query: 114 --------AWALEALYVIAYEIRVLAERADRE-------------LASNGKSPE-----K 147
AW + +LY++ +R+ A ++D E L S+ PE +
Sbjct: 115 GYNSHGFEAWTIPSLYMVGKYLRLFAIKSDEERRAKAFDTGPGASLISDDFDPETDKQLQ 174
Query: 148 LKAAGSFLMKVFGVLAG-----KGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSI--- 199
L+ L ++F + + S++ G ++ LFK YFKL + L R++++++
Sbjct: 175 LRDCEGHLKRIFSLCLNDRAPLEESRKWGIYFVINLLFKTYFKLNSASLSRTILKTLAVY 234
Query: 200 -ETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMIL 258
+ + E FPK +VT+ +Y G L EN+ A+ L+ A C+ + IL
Sbjct: 235 NDKGDMPPLEMFPKSQRVTFKFYEGVLLFLEENYIKAESHLNEAWQLCHKDAYPQSERIL 294
Query: 259 KYLIPVK-LSIGILPKDWLLEKYNLVE--YSNIVQALRRGDLRLLRHALEEHEDQYV-LF 314
YLIP + L+ +LP LLE Y ++ + + ++ G+L+ AL+ E ++V
Sbjct: 295 TYLIPCRLLTSHVLPTKALLENYPRLQDLFLPLATCIKTGNLQAFDQALQRGEAEFVKRR 354
Query: 315 IYFTL 319
IY TL
Sbjct: 355 IYLTL 359
>sp|O13873|CSN12_SCHPO Protein CSN12 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=csn12 PE=3 SV=1
Length = 423
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 92 DAYLAFEKSANAFIQEFRNWESAWA----LEALYVIAYEIRVLAERADREL--------- 138
D AF++ +R + S L L+++ ++R LA A +
Sbjct: 88 DPAAAFKQQTELAQHLYREFSSGRCTGVHLPVLFIVCKDLRFLAINAHNAMLRRKQQLKV 147
Query: 139 --ASNGKSPEKLKAAGSFLMKVFGVLAG-----KGSKRVGALYLTCQLFKIYFKLGTVHL 191
+ E+L+A + + F + S++ GA Y+ LFK+Y +L VHL
Sbjct: 148 ISVDESEENEQLEATARLINRAFTICINDRAPLSTSRKWGAYYIMGLLFKLYLRLDCVHL 207
Query: 192 CRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSE 251
+V+R+++ + D FPK V + YY G + N+N+ A +L A C+
Sbjct: 208 TNNVLRAMKVVELPDISLFPKSHVVIFHYYLGIVAFLNQNYKNASAELEIAFSLCHKGYN 267
Query: 252 ANIRMILKYLIPVKLSIG-ILPKDWLLEKY-NLVE-YSNIVQALRRGDLRLLRHALEEHE 308
N+ +IL Y IP ++ + LP LL K+ NL Y + +AL+ G+L L+++E
Sbjct: 268 RNLELILSYWIPTRILVNHQLPTKNLLSKFPNLASVYIPLTRALKSGNLGEFGKCLQKNE 327
Query: 309 DQYV-LFIYFTL-GSLQLSIK 327
IY TL G+ L I+
Sbjct: 328 TLLAKTKIYLTLEGTRDLCIR 348
>sp|Q6C1L4|CSN12_YARLI Protein CSN12 homolog OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=CSN12 PE=3 SV=1
Length = 396
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 19/281 (6%)
Query: 36 LSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYL 95
L+ + NS + L LA L V D N Q++ + A IT +++ + D+
Sbjct: 8 LNAAINSRNGLQLAHLLAVNPDTNPTAPQTNALAVAAGITNQVWQPVVEAHVLACNDSST 67
Query: 96 AFEK--SANAFIQEFRNW---ESAWALEALYVIAYEIRVLAERADRELASNGKSPE---K 147
E+ + AF+ E E W L LY + +R + RA +E+ E +
Sbjct: 68 PLERLQAHQAFLSELNRVSEKEDVWILPILYAASTHLRGIGRRALKEIQDKEAKNEILTQ 127
Query: 148 LKAAGSFLMKVFGVLAG------KGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIET 201
L+++ + + + + SK+ G + +L K+YF L ++ +SVI+ +E+
Sbjct: 128 LESSSRVVNRTLTLCLNDRHPSLQKSKKWGTYFFVGELCKLYFLLRKRNMSKSVIKVVES 187
Query: 202 AR--IFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILK 259
+ +P+ TY YY G L + +++ A L+ AL C +S N +IL
Sbjct: 188 MSRDLPPLASYPRSHTCTYSYYRGVLSLMDDDVEQAQNWLTQALNQCFYKSTDNQELILL 247
Query: 260 YLIPVK-LSIGILPKDWLLEKYNLVE--YSNIVQALRRGDL 297
+LIPV+ L +P + EK+ + Y ++ AL RGD+
Sbjct: 248 HLIPVQFLMTNQVPSKAVWEKFPRLHTVYHQMLTALLRGDV 288
>sp|Q9Y820|YON7_SCHPO PCI domain-containing protein C1105.07c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC1105.07c PE=4
SV=1
Length = 442
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 182 IYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241
+YF+L + LC+++ ++ ++ D + VT+ YY GR ++ A L +
Sbjct: 191 LYFRLKQIRLCQTIQANVISSGA-DISRATMAELVTFRYYLGRCHLYQRKIHQAKDHLLF 249
Query: 242 ALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLV-EYSNIVQALRRGDLRLL 300
+ + C + R+ L YL L +G P LLEKY L + +++AL+ GD++
Sbjct: 250 SFLQCPDECYHQKRLSLIYLTTCLLILGKSPTKGLLEKYKLTAAFEPLIKALKSGDIKSF 309
Query: 301 RHALEEH 307
R +LE++
Sbjct: 310 RLSLEDN 316
>sp|Q75BU2|CSN12_ASHGO COP9 signalosome complex subunit 12 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSN12
PE=3 SV=2
Length = 412
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 92/217 (42%), Gaps = 28/217 (12%)
Query: 110 NWESAWALEALYVIAYEIRVLAERADREL--------ASNGKSPEKLKAAGSFLMKVFGV 161
WES W + LY A ++ +A D + + + L G + +
Sbjct: 81 EWESGWVVYPLYTCARQLVQMAAALDARTERAAEAAQCGDLATEDHLTQCGRAVHMSLNL 140
Query: 162 L-----AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEE----FPK 212
+KR GA Y LF+ Y +LG L ++++ +E+ R D F +
Sbjct: 141 CLKDRDPAASNKRHGAYYFALLLFRTYARLGAHSLVTNMVKVLES-RAQDLPPVERAFGE 199
Query: 213 RD--KVTYMYYTGRLEVFNE-NFPAADQKLSYALINCNPQSEANIRMILKYLIPVK-LSI 268
R VTY YY GR ++ + L+ AL+ C+ + ++IL YL+PV L+
Sbjct: 200 RRALTVTYCYYLGRYHACRRADYEKGFRWLNTALLTCHRDHTRHHQLILTYLVPVAFLAR 259
Query: 269 GILPKDWLLEKYN------LVEYSNIVQALRRGDLRL 299
PK ++ + + Y+ +V ALR GDL L
Sbjct: 260 RWYPKHHVIAAWPPPQDPAAIHYAALVAALRSGDLGL 296
>sp|Q6BGR7|CSN12_DEBHA Protein CSN12 homolog OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CSN12 PE=3
SV=2
Length = 438
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 130 LAERADRELASNGKSPEKLKAA--GSFLMKVFGV-LAGKGSKRVGALYLTCQLFKIYFKL 186
L+ + E ++ S E+L A GSF + + L SKR+ + L KIYFKL
Sbjct: 133 LSNLENNEYGNSSSSLERLAATINGSFKLSLNDKNLDLSQSKRLDIYFFLGNLIKIYFKL 192
Query: 187 GTVHLCRSVIRSIETARIFDFEEF-----PKRDKVTYMYYTGRLEVFNENFPAADQKLSY 241
G + L +SV ++++ R F+ + KR VTY+YY+ L + + +F +++KL
Sbjct: 193 GKLELAKSVEKALKGTR-FNLPKLNGAGSSKRYAVTYLYYSALLSLDDADFTTSEEKLVK 251
Query: 242 AL--INC--NPQSEANIRMILKYLIPVKLSIG--ILPKDWLLEKYNLVEY---SNIVQAL 292
A+ ++C +P++ N + ++ + P + + EK+ +++ N+ A+
Sbjct: 252 AMEILSCYKDPKNVKNQTEKILIILLPLKLYNKRLTPSNEIWEKFPKLKFMYKDNLFDAI 311
Query: 293 RRGDLRLLRHALEEHE 308
+ G+L+ AL +++
Sbjct: 312 KNGNLKKFDQALTKYQ 327
>sp|Q08231|THP1_YEAST Nuclear mRNA export protein THP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=THP1 PE=1 SV=1
Length = 455
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 166 GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGR 224
G +R+ LYL +L IYF++ + LC ++ ++ + + F E+ ++ Y Y GR
Sbjct: 170 GKQRI-LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGR 228
Query: 225 LEVFNENFPAADQKLSYA---LINCNPQSEANIR---MILKYLIPVKLSIGILPKDW--- 275
+ N A + + A L+N ++A R IL Y+IP L +G + K W
Sbjct: 229 YYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVK-WGPL 287
Query: 276 --LLEKYNLVEYSNIVQALRRGDLRLLRHALEEHE 308
L + + +S + + +R G+++ + L ++E
Sbjct: 288 RPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNE 322
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM-ILKYLIPVKLSIGILPKDWL 276
++YY GR++ + A ++L AL Q+ R + K +I V+L +G +P+ +
Sbjct: 255 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKV 314
Query: 277 LE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
+ +L Y + QA+R G+L+ LE +Q+ FTL
Sbjct: 315 FRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTL 361
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMIL-KYLIPVKLSIGILPKDWL 276
Y+YYTGR++ + A + ++ AL + + + K LI V+L +G +P
Sbjct: 284 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQ 343
Query: 277 LE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
K +L+ Y + QA+R G+L L++ +++ +TL
Sbjct: 344 FRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTL 390
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMIL-KYLIPVKLSIGILPKDWL 276
Y+YYTGR++ + A + ++ AL + + + K LI V+L +G +P
Sbjct: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQ 347
Query: 277 LE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
K +L+ Y + QA+R G+L L++ +++ +TL
Sbjct: 348 FRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTL 394
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMIL-KYLIPVKLSIGILPKDWL 276
Y+YYTGR++ + A + ++ AL + + + K LI V+L +G +P
Sbjct: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQ 347
Query: 277 LE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
K +L+ Y + QA+R G+L L++ +++ +TL
Sbjct: 348 FRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTL 394
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEAN--IRMILKYLIPVKLSIGILPKDW 275
Y YY GR+ + + + L+ A I PQ+ A R + K L V+L +G +P+
Sbjct: 256 YFYYQGRIRAIQLEYAESFKFLTQA-IRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPERN 314
Query: 276 LLE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
K L Y ++ +A+R GDL ALE++ D + FTL
Sbjct: 315 TFSQKQLKIALKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTL 362
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 216 VTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM---ILKYLIPVKLSIGILP 272
+ Y YY GR+ ++ A + L A I P + ++ + K I V+L +G +P
Sbjct: 248 IRYQYYLGRIRAIQLDYTTAHEHLVSA-IRKAPNTVYAVQFLEAVYKLHIVVQLLMGEIP 306
Query: 273 KDWL-----LEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
+ + LEK LV Y I QA+R GDL AL ++E ++ +TL
Sbjct: 307 ERRIFRQKSLEK-TLVPYLRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTL 357
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 49 ADSLNVFQDANRLIKQSDNY--SPFADITVPLFRSLQHYRTGNLVD 92
AD+ N FQDA + D +PFA + VPLF +++ R G +D
Sbjct: 452 ADNYNAFQDAGKYSDFQDGSCSTPFAPLIVPLFMTIRPKRVGVFLD 497
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM-ILKYLIPVKLSIGILPKDWL 276
++YY GR++ + A ++L AL Q+ R + K +I V+L +G +P+ +
Sbjct: 251 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKV 310
Query: 277 LE----KYNLVEYSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
+ +L Y + QA+R G+L+ L +Q+ FTL
Sbjct: 311 FRQAALRRSLGPYFQLTQAVRMGNLQRFGEVLVNFGEQFRQDHTFTL 357
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 218 YMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRM-ILKYLIPVKLSIGILPKDWL 276
++YY GR++ + A + L AL + R + K +I V+L +G +P+ +
Sbjct: 249 FLYYLGRIKAAKLEYSDAHKHLVQALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVV 308
Query: 277 LEKYNLVE----YSNIVQALRRGDLRLLRHALEEHEDQYVLFIYFTL 319
+ L + Y + QA+R G+L+ + ++ ++ L FTL
Sbjct: 309 FRQAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFTL 355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,697,648
Number of Sequences: 539616
Number of extensions: 4439483
Number of successful extensions: 10040
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9971
Number of HSP's gapped (non-prelim): 40
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)